HHsearch alignment for GI: 254780545 and conserved domain: TIGR02442

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=98.52  E-value=5.7e-07  Score=69.45  Aligned_cols=150  Identities=31%  Similarity=0.468  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC-----
Q ss_conf             988985288999999-99987433567664201233311003787425888999974246-------99702058-----
Q gi|254780545|r  147 FKDVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS-----  213 (647)
Q Consensus       147 f~dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~-----  213 (647)
T Consensus         3 F~AiVGQe~LK~ALLL~Av~P--------~-----iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~   69 (688)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVNP--------R-----IGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEE   69 (688)
T ss_pred             CCCCCCHHHHHHHHHHEEECC--------C-----CCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf             742214279865321002526--------6-----370788778886278988848761602366404788877788704


Q ss_pred             --------------------HHHHHHHHHHCCHHHHH-------------HHHH---HHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf             --------------------57886444203324599-------------9999---99873780120632356414455
Q gi|254780545|r  214 --------------------GSDFVELFVGVGASRVR-------------DMFE---QAKNNSPCIVFVDEIDAVGRHRG  257 (647)
Q Consensus       214 --------------------~s~~~~~~~g~g~~~vr-------------~lf~---~a~~~~p~iifiDeida~~~~r~  257 (647)
T Consensus        70 ~C~~C~~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~Ahr-GiLYiDEVNLLd----  144 (688)
T TIGR02442        70 WCEECRRKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHR-GILYIDEVNLLD----  144 (688)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCC-CEEEEEEECCCC----
T ss_conf             006767555204775313587358865877523322130548999871856607886175468-716785200144----


Q ss_pred             CCCCCCCHHHHHHHHHHHH---------HHCCCCCC--CCEEEEEECC------CCCCCCHHHCCCCCCCCEEEECHHH-
Q ss_conf             7898862688988998998---------53032357--7829999629------8100883331656423141000134-
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLV---------EMDGFESS--EGVILIAATN------RPDVLDAALLRPGRFDRQITVPNPD-  319 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~---------~mdg~~~~--~~v~vi~aTn------~~~~lD~al~RpgRfd~~i~~~~P~-  319 (647)
T Consensus       145 -------D---hlVD~lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG~LRPQLLD-------RFGL~V~v~~~~d  207 (688)
T TIGR02442       145 -------D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD-------RFGLCVDVAASRD  207 (688)
T ss_pred             -------C---HHHHHHHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHHHHCHHHHH-------HHHCEEEECCCCC
T ss_conf             -------1---4778999987648006763574300114553220378522110223242-------4401155024358


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             788999999985
Q gi|254780545|r  320 IVGREHILMVHS  331 (647)
Q Consensus       320 ~~~r~~i~~~~~  331 (647)
T Consensus       208 ~~~R~Ev~~Rrl  219 (688)
T TIGR02442       208 PEERVEVIRRRL  219 (688)
T ss_pred             HHHHHHHHHHHH
T ss_conf             668999999997