HHsearch alignment for GI: 254780545 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.37  E-value=8.4e-12  Score=104.39  Aligned_cols=299  Identities=24%  Similarity=0.315  Sum_probs=179.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEE
Q ss_conf             242256988985288999999999874335676642012333110037874258889999742469----------9702
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFF  210 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~  210 (647)
T Consensus        59 ~RP~-SF~EIiGQe~GI~ALK------------AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV  125 (532)
T TIGR02902        59 TRPK-SFDEIIGQEEGIKALK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV  125 (532)
T ss_pred             CCCC-CCCCCCCCHHHHHHHH------------HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             6777-6332567355689999------------86068689638987886961789999999986508753789886689


Q ss_pred             CCCHHH--HHH--------------HHHHCCHHHHHHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             058578--864--------------4420332459999-----9999873780120632356414455789886268898
Q gi|254780545|r  211 TISGSD--FVE--------------LFVGVGASRVRDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ  269 (647)
Q Consensus       211 ~~~~s~--~~~--------------~~~g~g~~~vr~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~  269 (647)
T Consensus       126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP--------------~  190 (532)
T TIGR02902       126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHP--------------V  190 (532)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCH--------------H
T ss_conf             85051036021466665677615853337654578855758777632025-86551212466582--------------4


Q ss_pred             HHHHHHHHHCC---------C-CCCCC----------------EEEEEEC-CCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf             89989985303---------2-35778----------------2999962-98100883331656423141000134788
Q gi|254780545|r  270 TLNQLLVEMDG---------F-ESSEG----------------VILIAAT-NRPDVLDAALLRPGRFDRQITVPNPDIVG  322 (647)
Q Consensus       270 ~ln~ll~~mdg---------~-~~~~~----------------v~vi~aT-n~~~~lD~al~RpgRfd~~i~~~~P~~~~  322 (647)
T Consensus       191 ~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRS--R-C~EIFFR~L~~EE  267 (532)
T TIGR02902       191 QMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRS--R-CVEIFFRPLLKEE  267 (532)
T ss_pred             HHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHC--C-CEEEEECCCCHHH
T ss_conf             353141133022200001235877786542789972067873401213336987767834650--5-2267716888789


Q ss_pred             HHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9999999854887--77321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r  323 REHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT  400 (647)
Q Consensus       323 r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~  400 (647)
T Consensus       268 i~~iAk~AaeKIg~~l~~~-Al~~I~~Ya--~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~-------------  331 (532)
T TIGR02902       268 IKEIAKNAAEKIGLNLEKE-ALDLIAKYA--SNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES-------------  331 (532)
T ss_pred             HHHHHHHHHHHCCCCCCHH-HHHHHHHHH--CCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH-------------
T ss_conf             9999876565304654754-799999874--054067789999731401288761205464455530-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCEEEEHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66778999999999999985058773234322014-55564056400244322-----6899999999999878988888
Q gi|254780545|r  401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPR-GRALGMVMQLPEADRHS-----TTYVWMTSRLTILMGGRVAEEF  474 (647)
Q Consensus       401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipR-g~alG~t~~~p~~d~~~-----~tk~~l~~~i~v~LgGRaAEei  474 (647)
T Consensus       332 -----------------G~y~Pk~~--~k~~~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~  392 (532)
T TIGR02902       332 -----------------GNYHPKPE--IKLSSEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEE  392 (532)
T ss_pred             -----------------CCCCCCCC--EEECCCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECE
T ss_conf             -----------------47877434--02078885356655446067755130234377660114884289988871000


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf             61368756523355899999999998624-888
Q gi|254780545|r  475 TFGEDNVTSGAMSDIEYATKLARVMVTQF-GFS  506 (647)
Q Consensus       475 ~fG~~~ittGAs~DL~~AT~iA~~mV~~~-GMs  506 (647)
T Consensus       393 ~-gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i~  424 (532)
T TIGR02902       393 I-GGSGKSVRRKSSAKGSVENVLAVLKSVFNIN  424 (532)
T ss_pred             E-CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             1-7989615200224430889999999884788