HHsearch alignment for GI: 254780545 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.37 E-value=8.4e-12 Score=104.39 Aligned_cols=299 Identities=24% Similarity=0.315 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEE
Q ss_conf 242256988985288999999999874335676642012333110037874258889999742469----------9702
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFF 210 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~ 210 (647)
T Consensus 59 ~RP~-SF~EIiGQe~GI~ALK------------AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV 125 (532)
T TIGR02902 59 TRPK-SFDEIIGQEEGIKALK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV 125 (532)
T ss_pred CCCC-CCCCCCCCHHHHHHHH------------HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 6777-6332567355689999------------86068689638987886961789999999986508753789886689
Q ss_pred CCCHHH--HHH--------------HHHHCCHHHHHHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 058578--864--------------4420332459999-----9999873780120632356414455789886268898
Q gi|254780545|r 211 TISGSD--FVE--------------LFVGVGASRVRDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ 269 (647)
Q Consensus 211 ~~~~s~--~~~--------------~~~g~g~~~vr~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~ 269 (647)
T Consensus 126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP--------------~ 190 (532)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHP--------------V 190 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCH--------------H
T ss_conf 85051036021466665677615853337654578855758777632025-86551212466582--------------4
Q ss_pred HHHHHHHHHCC---------C-CCCCC----------------EEEEEEC-CCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf 89989985303---------2-35778----------------2999962-98100883331656423141000134788
Q gi|254780545|r 270 TLNQLLVEMDG---------F-ESSEG----------------VILIAAT-NRPDVLDAALLRPGRFDRQITVPNPDIVG 322 (647)
Q Consensus 270 ~ln~ll~~mdg---------~-~~~~~----------------v~vi~aT-n~~~~lD~al~RpgRfd~~i~~~~P~~~~ 322 (647)
T Consensus 191 ~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRS--R-C~EIFFR~L~~EE 267 (532)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRS--R-CVEIFFRPLLKEE 267 (532)
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHC--C-CEEEEECCCCHHH
T ss_conf 353141133022200001235877786542789972067873401213336987767834650--5-2267716888789
Q ss_pred HHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999854887--77321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r 323 REHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT 400 (647)
Q Consensus 323 r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~ 400 (647)
T Consensus 268 i~~iAk~AaeKIg~~l~~~-Al~~I~~Ya--~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~------------- 331 (532)
T TIGR02902 268 IKEIAKNAAEKIGLNLEKE-ALDLIAKYA--SNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES------------- 331 (532)
T ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHH--CCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH-------------
T ss_conf 9999876565304654754-799999874--054067789999731401288761205464455530-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCEEEEHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66778999999999999985058773234322014-55564056400244322-----6899999999999878988888
Q gi|254780545|r 401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPR-GRALGMVMQLPEADRHS-----TTYVWMTSRLTILMGGRVAEEF 474 (647)
Q Consensus 401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipR-g~alG~t~~~p~~d~~~-----~tk~~l~~~i~v~LgGRaAEei 474 (647)
T Consensus 332 -----------------G~y~Pk~~--~k~~~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~ 392 (532)
T TIGR02902 332 -----------------GNYHPKPE--IKLSSEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEE 392 (532)
T ss_pred -----------------CCCCCCCC--EEECCCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECE
T ss_conf -----------------47877434--02078885356655446067755130234377660114884289988871000
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf 61368756523355899999999998624-888
Q gi|254780545|r 475 TFGEDNVTSGAMSDIEYATKLARVMVTQF-GFS 506 (647)
Q Consensus 475 ~fG~~~ittGAs~DL~~AT~iA~~mV~~~-GMs 506 (647)
T Consensus 393 ~-gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i~ 424 (532)
T TIGR02902 393 I-GGSGKSVRRKSSAKGSVENVLAVLKSVFNIN 424 (532)
T ss_pred E-CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1-7989615200224430889999999884788