HHsearch alignment for GI: 254780545 and conserved domain: TIGR02974

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.11  E-value=0.0009  Score=46.29  Aligned_cols=161  Identities=29%  Similarity=0.443  Sum_probs=89.3

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHH---HCCCCCCEECCCHHHHHH------HHHH-----CCHHHH-HHHHHH
Q ss_conf             6766420123331100378742588899997---424699702058578864------4420-----332459-999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAV---AGEANVPFFTISGSDFVE------LFVG-----VGASRV-RDMFEQ  235 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~---a~e~~~~f~~~~~s~~~~------~~~g-----~g~~~v-r~lf~~  235 (647)
T Consensus        13 eqvS~l-A~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTGA~~rh~GRFER   91 (349)
T TIGR02974        13 EQVSRL-APLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTGAKKRHEGRFER   91 (349)
T ss_pred             HHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCEE
T ss_conf             987510-4678866886146746899998853324655488626610127825555665310010013030468898544


Q ss_pred             HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--H---HCCCCCC----CCEEEEEECCCCCCCCHHHCCC
Q ss_conf             98737801206323564144557898862688988998998--5---3032357----7829999629810088333165
Q gi|254780545|r  236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV--E---MDGFESS----EGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~--~---mdg~~~~----~~v~vi~aTn~~~~lD~al~Rp  306 (647)
T Consensus        92 AdG---GTLFLDElAta-s~-------~VQE------KLLRViEYG~fERVGG~~~l~vDVRlvaATN~-DL--P~lA~~  151 (349)
T TIGR02974        92 ADG---GTLFLDELATA-SL-------AVQE------KLLRVIEYGEFERVGGSQTLKVDVRLVAATNA-DL--PALAAE  151 (349)
T ss_pred             CCC---CCCHHHHHHCC-CH-------HHHH------HHHHHHCCCCEEECCCCCEEEECCEEEECCCC-CH--HHHHHC
T ss_conf             368---87388887142-16-------7678------66120101303301786047735136762141-36--989865


Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-------------HHCCCHHHHHHH
Q ss_conf             642314100013478899999998548877732110245441-------------203798999999
Q gi|254780545|r  307 GRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARG-------------TPGFSGADLRNL  360 (647)
Q Consensus       307 gRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~-------------t~g~sgAdi~~~  360 (647)
T Consensus       152 G~FR-------aDLLDRLAFDVi~LPPLR~R~~-DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L  210 (349)
T TIGR02974       152 GRFR-------ADLLDRLAFDVITLPPLRERQE-DIMLLAEHFAIRMARELGLPLFPGFTPQAREQL  210 (349)
T ss_pred             CCCC-------CHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             8984-------0145544565507978888723-278999999999999707865511438999999