HHsearch alignment for GI: 254780545 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.19 E-value=7.8e-10 Score=90.16 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 4225698898528899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
T Consensus 9 ~~~~tfdnFi~~~-N~~~~~~l~~~~~~~------~---~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~ 78 (226)
T TIGR03420 9 PDDPTFDNFYAGG-NAELLAALRQLAAGK------G---DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCCHHCCCCCC-HHHHHHHHHHHHHCC------C---CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 9987631236586-799999999876466------8---88699989999988999999999986269957995299987
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
T Consensus 79 ~~~~--------~~l~~l-~~-~d~l~iDDi~~i~~~~~~e-----~~lF~l~N~~-------~~~~~~ilits~~~p~~ 136 (226)
T TIGR03420 79 QADP--------EVLEGL-EQ-ADLVCLDDVEAIAGQPEWQ-----EALFHLYNRV-------REAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HHHH--------HHHHHC-CC-CCEEEEECHHHHCCCHHHH-----HHHHHHHHHH-------HHHCCEEEEECCCCHHH
T ss_conf 7539--------999727-44-8999996633343783789-----9999999999-------86528289867888232
Q ss_pred CC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88---333165642--31410001347889999999854--887773211024544120379899999999987645532
Q gi|254780545|r 299 LD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 299 lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
T Consensus 137 l~~~l~dL~--SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~v-i~yl~~r~~-R~~~~l~~~l~~Ld~~sl-~ 211 (226)
T TIGR03420 137 LPLRLPDLR--TRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL-A 211 (226)
T ss_pred CCCCHHHHH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHHH-H
T ss_conf 032017799--99968856852799999999999999998599889999-999998637-989999999999999999-8
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 0242104568999
Q gi|254780545|r 372 NRRLVTMQEFEDA 384 (647)
Q Consensus 372 ~~~~i~~~dl~~A 384 (647)
T Consensus 212 ~kr~ITi~l~kev 224 (226)
T TIGR03420 212 AKRKITIPFVKEV 224 (226)
T ss_pred HCCCCCHHHHHHH
T ss_conf 0899999999998