HHsearch alignment for GI: 254780545 and conserved domain: TIGR03420

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.19  E-value=7.8e-10  Score=90.16  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf             4225698898528899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV  218 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~  218 (647)
T Consensus         9 ~~~~tfdnFi~~~-N~~~~~~l~~~~~~~------~---~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~   78 (226)
T TIGR03420         9 PDDPTFDNFYAGG-NAELLAALRQLAAGK------G---DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCCHHCCCCCC-HHHHHHHHHHHHHCC------C---CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf             9987631236586-799999999876466------8---88699989999988999999999986269957995299987


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
T Consensus        79 ~~~~--------~~l~~l-~~-~d~l~iDDi~~i~~~~~~e-----~~lF~l~N~~-------~~~~~~ilits~~~p~~  136 (226)
T TIGR03420        79 QADP--------EVLEGL-EQ-ADLVCLDDVEAIAGQPEWQ-----EALFHLYNRV-------REAGGRLLIAGRAAPAQ  136 (226)
T ss_pred             HHHH--------HHHHHC-CC-CCEEEEECHHHHCCCHHHH-----HHHHHHHHHH-------HHHCCEEEEECCCCHHH
T ss_conf             7539--------999727-44-8999996633343783789-----9999999999-------86528289867888232


Q ss_pred             CC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88---333165642--31410001347889999999854--887773211024544120379899999999987645532
Q gi|254780545|r  299 LD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       299 lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
T Consensus       137 l~~~l~dL~--SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~v-i~yl~~r~~-R~~~~l~~~l~~Ld~~sl-~  211 (226)
T TIGR03420       137 LPLRLPDLR--TRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL-A  211 (226)
T ss_pred             CCCCHHHHH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHHH-H
T ss_conf             032017799--99968856852799999999999999998599889999-999998637-989999999999999999-8


Q ss_pred             HCCCCCHHHHHHH
Q ss_conf             0242104568999
Q gi|254780545|r  372 NRRLVTMQEFEDA  384 (647)
Q Consensus       372 ~~~~i~~~dl~~A  384 (647)
T Consensus       212 ~kr~ITi~l~kev  224 (226)
T TIGR03420       212 AKRKITIPFVKEV  224 (226)
T ss_pred             HCCCCCHHHHHHH
T ss_conf             0899999999998