HHsearch alignment for GI: 254780545 and conserved domain: cd00464

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.54  E-value=0.0001  Score=53.08  Aligned_cols=46  Identities=28%  Similarity=0.650  Sum_probs=36.5

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             100378742588899997424699702058578864442033245999999
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE  234 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~  234 (647)
T Consensus         2 I~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~~~g~s---i~eif~   47 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGMS---IPEIFA   47 (154)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC---HHHHHH
T ss_conf             899889999889999999999798979685--9999994999---999998