HHsearch alignment for GI: 254780545 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.54 E-value=0.0001 Score=53.08 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=36.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 100378742588899997424699702058578864442033245999999
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE 234 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~ 234 (647)
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~~~g~s---i~eif~ 47 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGMS---IPEIFA 47 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC---HHHHHH
T ss_conf 899889999889999999999798979685--9999994999---999998