HHsearch alignment for GI: 254780545 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19  E-value=0.0089  Score=39.08  Aligned_cols=37  Identities=35%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHH----CCCCCCEECCC
Q ss_conf             01233311003787425888999974----24699702058
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVA----GEANVPFFTIS  213 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a----~e~~~~f~~~~  213 (647)
T Consensus        26 Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S   66 (271)
T cd01122          26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS   66 (271)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99998089999689986999999999999997699089997