HHsearch alignment for GI: 254780545 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19 E-value=0.0089 Score=39.08 Aligned_cols=37 Identities=35% Similarity=0.351 Sum_probs=25.2
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHH----CCCCCCEECCC
Q ss_conf 01233311003787425888999974----24699702058
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVA----GEANVPFFTIS 213 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a----~e~~~~f~~~~ 213 (647)
T Consensus 26 Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S 66 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99998089999689986999999999999997699089997