HHsearch alignment for GI: 254780545 and conserved domain: cd01129

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53  E-value=0.056  Score=33.29  Aligned_cols=100  Identities=23%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC
Q ss_conf             00112422569889852889999999998743356766420123331-10037874258889999742469---970205
Q gi|254780545|r  137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI  212 (647)
Q Consensus       137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~  212 (647)
T Consensus        49 ll~~~~~~~~L~~LG~~~~~~~~l~~~~--------------~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~ti  114 (264)
T cd01129          49 ILDKKNQILDLEKLGLKPENLEIFRKLL--------------EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV  114 (264)
T ss_pred             EECCCCCCCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             7577666579879579999999999997--------------08998899978999977999999998643688508998


Q ss_pred             CHH-HHH-----HHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             857-886-----44420332-459999999987378012063235
Q gi|254780545|r  213 SGS-DFV-----ELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       213 ~~s-~~~-----~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeid  250 (647)
T Consensus       115 EdPvE~~~~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~igEiR  159 (264)
T cd01129         115 EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             ECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf             676314568873576166668789999999855699988746889