HHsearch alignment for GI: 254780545 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53 E-value=0.056 Score=33.29 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC
Q ss_conf 00112422569889852889999999998743356766420123331-10037874258889999742469---970205
Q gi|254780545|r 137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI 212 (647)
Q Consensus 137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~ 212 (647)
T Consensus 49 ll~~~~~~~~L~~LG~~~~~~~~l~~~~--------------~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~ti 114 (264)
T cd01129 49 ILDKKNQILDLEKLGLKPENLEIFRKLL--------------EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred EECCCCCCCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7577666579879579999999999997--------------08998899978999977999999998643688508998
Q ss_pred CHH-HHH-----HHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 857-886-----44420332-459999999987378012063235
Q gi|254780545|r 213 SGS-DFV-----ELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 213 ~~s-~~~-----~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeid 250 (647)
T Consensus 115 EdPvE~~~~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~igEiR 159 (264)
T cd01129 115 EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 676314568873576166668789999999855699988746889