HHsearch alignment for GI: 254780545 and conserved domain: cd01882
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=93.37 E-value=0.096 Score=31.62 Aligned_cols=70 Identities=26% Similarity=0.417 Sum_probs=40.1
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC-CCCCEECCCHH-------HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf 0123331100378742588899997424-69970205857-------88644420332459999999987378012063
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE-ANVPFFTISGS-------DFVELFVGVGASRVRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e-~~~~f~~~~~s-------~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiD 247 (647)
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc-~nDi~smiD~AKvADlVLl~iD 112 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIEC-PNDINAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEC-CCHHHHHHHHHHHHHEEEEEEC
T ss_conf 89999699998989977889999999998544375578887999468426899974-8609999878876433688861