HHsearch alignment for GI: 254780545 and conserved domain: cd03216
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.75 E-value=0.13 Score=30.57 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHHH-----CCHHHHHHHHHHHHHH
Q ss_conf 0123331--10037874258889999742469----------97020585788644420-----3324599999999873
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFVG-----VGASRVRDMFEQAKNN 239 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a~~~ 239 (647)
T Consensus 20 sl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qLSgG~~Qrv~iaral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 88987998999998899899999999957768985789999999999999999987994894699899999999999972
Q ss_pred CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 78012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 240 ~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
T Consensus 100 ~p~llilDEPt-----~gLD~----~~~-~~i~~~l~~l---~~-~G~til~vtH~l~~ 144 (163)
T cd03216 100 NARLLILDEPT-----AALTP----AEV-ERLFKVIRRL---RA-QGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEEECCHHH
T ss_conf 99999990975-----57999----999-9999999999---87-89899999384999