HHsearch alignment for GI: 254780545 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.95 E-value=0.025 Score=35.81 Aligned_cols=118 Identities=24% Similarity=0.342 Sum_probs=62.0
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf 6420123331--1003787425888999974246997--020585788644420--332459999999987378012063
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiD 247 (647)
T Consensus 17 ~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i-~y~~QLSgGqkqr~~la~al~~~p~iliLD 95 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEE-EEEHHCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6348998799999999899984999999984898898509999996089-987007999999999999972599899995
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf 23564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r 248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~ 315 (647)
T Consensus 96 EPt~-------~L---D~~~~~~i~~~l~~~~------~tii-~vsHd~~~~~~------~~drii~l 140 (144)
T cd03221 96 EPTN-------HL---DLESIEALEEALKEYP------GTVI-LVSHDRYFLDQ------VATKIIEL 140 (144)
T ss_pred CCCC-------CC---CHHHHHHHHHHHHHCC------CEEE-EEECCHHHHHH------HCCEEEEE
T ss_conf 7755-------58---9999999999999709------9999-99679899998------79999999