HHsearch alignment for GI: 254780545 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.03 E-value=0.0045 Score=41.23 Aligned_cols=119 Identities=34% Similarity=0.535 Sum_probs=68.6
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-------------CEECC-----CHHHHHHH----HHH--CCH
Q ss_conf 66420123331--100378742588899997424699-------------70205-----85788644----420--332
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-------------PFFTI-----SGSDFVEL----FVG--VGA 226 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-------------~f~~~-----~~s~~~~~----~~g--~g~ 226 (647)
T Consensus 17 l~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~t-l~e~l~~p~~~~LSGG 95 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT-LREQLIYPWDDVLSGG 95 (166)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCC-HHHHHHCCCCCCCCHH
T ss_conf 944588988999999995899988999999869876998679976998799985646658875-9999636154678999
Q ss_pred HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf 45999999998737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r 227 SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 227 ~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp 306 (647)
T Consensus 96 qkQRvalARal~~~p~iliLDEpTs~-------L---D~~~~~~l~~~l~~~-------~~Tvi~VtH~~~~-----~~- 152 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSA-------L---DEESEDRLYQLLKEL-------GITVISVGHRPSL-----WK- 152 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC-------C---CHHHHHHHHHHHHHC-------CCEEEEEECCHHH-----HH-
T ss_conf 99999999999649999997585332-------8---999999999999977-------9989999434699-----97-
Q ss_pred CCCCCEEEEC
Q ss_conf 6423141000
Q gi|254780545|r 307 GRFDRQITVP 316 (647)
Q Consensus 307 gRfd~~i~~~ 316 (647)
T Consensus 153 -~aDrvl~Ld 161 (166)
T cd03223 153 -FHDRVLDLD 161 (166)
T ss_pred -CCCEEEEEE
T ss_conf -299999991