>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.82 E-value=0.0074 Score=39.68 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=66.3 Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC----------CEECCCHHHHHHH----------H-------- Q ss_conf 766420123331--100378742588899997424699----------7020585788644----------4-------- Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV----------PFFTISGSDFVEL----------F-------- 221 (647) Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~----------~f~~~~~s~~~~~----------~-------- 221 (647) T Consensus 17 iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi 96 (171) T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96 (171) T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC T ss_conf 16771899859989999999998399999999767758974899999998859989986318999666843757799977 Q ss_pred HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH Q ss_conf 20332459999999987378012063235641445578988626889889989985303235778299996298100883 Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA 301 (647) Q Consensus 222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~ 301 (647) T Consensus 97 LSgGq-~Qri~lARal~~~p~illlDEpts-------~L---D~~~~~~i~~~l~~~~---~--~~Tvi~vtH~~~~~-- 158 (171) T cd03228 97 LSGGQ-RQRIAIARALLRDPPILILDEATS-------AL---DPETEALILEALRALA---K--GKTVIVIAHRLSTI-- 158 (171) T ss_pred CCHHH-HHHHHHHHHHHHCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHHC---C--CCEEEEEECCHHHH-- T ss_conf 44889-999999999974899899957766-------79---9899999999999980---9--99899995799999-- Q ss_pred HHCCCCCCCCEEEEC Q ss_conf 331656423141000 Q gi|254780545|r 302 ALLRPGRFDRQITVP 316 (647) Q Consensus 302 al~RpgRfd~~i~~~ 316 (647) T Consensus 159 ---~--~~D~v~~l~ 168 (171) T cd03228 159 ---R--DADRIIVLD 168 (171) T ss_pred ---H--HCCEEEEEE T ss_conf ---7--099999981

HHsearch alignment for GI: 254780545 and conserved domain: cd03228