HHsearch alignment for GI: 254780545 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.11 E-value=0.047 Score=33.88 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=11.8
Q ss_pred EEECCCCCHHHHHHHHHHHC
Q ss_conf 10037874258889999742
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~ 203 (647)
T Consensus 25 taivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99998999999999999863