HHsearch alignment for GI: 254780545 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.07 E-value=0.033 Score=35.01 Aligned_cols=32 Identities=44% Similarity=0.678 Sum_probs=24.8
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
T Consensus 18 ~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~ 51 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6177986998999999998809999999976999