HHsearch alignment for GI: 254780545 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.73 E-value=0.15 Score=30.22 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=36.6
Q ss_pred EEECCCCCHHHHHHHHHHHCC-CCCCEE------CCCHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCHHEEH-
Q ss_conf 100378742588899997424-699702------0585788---------64442033245999999998737801206-
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE-ANVPFF------TISGSDF---------VELFVGVGASRVRDMFEQAKNNSPCIVFV- 246 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e-~~~~f~------~~~~s~~---------~~~~~g~g~~~vr~lf~~a~~~~p~iifi- 246 (647)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~Vv 81 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999888899998875036767776554035313268999989999999968987888789987428987899998
Q ss_pred H
Q ss_conf 3
Q gi|254780545|r 247 D 247 (647)
Q Consensus 247 D 247 (647)
T Consensus 82 D 82 (167)
T cd04160 82 D 82 (167)
T ss_pred E
T ss_conf 6