HHsearch alignment for GI: 254780545 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.10 E-value=0.087 Score=31.91 Aligned_cols=102 Identities=26% Similarity=0.419 Sum_probs=60.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf 1003787425888999974246997-0205857886---------44420332459999999987378012063235641
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~~~gIIfV--VDssD 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV--VDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE--EECCC
T ss_conf 9999679998999999981699876535632774699998999999985375288865699871177589999--95688
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 44557898862688988998998530323577829999629810088
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
T Consensus 80 ~~r-------l~eak~~L~~ll~~~----~~~PlLIla--NKqDl~~ 113 (164)
T cd04162 80 SER-------LPLARQELHQLLQHP----PDLPLVVLA--NKQDLPA 113 (164)
T ss_pred HHH-------HHHHHHHHHHHHHCC----CCCEEEEEE--ECCCCCC
T ss_conf 889-------999999999997087----998699998--6324336