Query         gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 647
No_of_seqs    318 out of 4649
Neff          6.5 
Searched_HMMs 39220
Date          Mon May 30 00:50:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780545.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01241 FtsH_fam ATP-depende 100.0       0       0 1683.8  33.4  497   94-590     1-505 (505)
  2 PRK10733 hflB ATP-dependent me 100.0       0       0 1480.9  59.6  609    2-612     7-616 (644)
  3 CHL00176 ftsH cell division pr 100.0       0       0 1434.4  57.7  575   21-598    41-625 (631)
  4 COG0465 HflB ATP-dependent Zn  100.0       0       0 1289.9  49.6  572   20-596    19-595 (596)
  5 KOG0731 consensus              100.0       0       0 1154.8  43.3  565   23-597   163-754 (774)
  6 KOG0734 consensus              100.0       0       0 1136.4  35.1  476  101-593   260-736 (752)
  7 COG1222 RPT1 ATP-dependent 26S 100.0       0       0  634.6  20.2  257  138-394   141-398 (406)
  8 PRK03992 proteasome-activating 100.0       0       0  629.3  22.0  259  139-397   123-382 (390)
  9 TIGR01242 26Sp45 26S proteasom 100.0       0       0  627.4  14.4  253  137-389   111-364 (364)
 10 KOG0730 consensus              100.0       0       0  592.3  20.8  247  139-388   425-674 (693)
 11 KOG0733 consensus              100.0       0       0  564.1  20.1  230  139-371   181-414 (802)
 12 TIGR01243 CDC48 AAA family ATP 100.0       0       0  528.4  15.8  234  139-373   532-766 (980)
 13 KOG0736 consensus              100.0       0       0  514.7  18.3  258  139-405   663-942 (953)
 14 KOG0733 consensus              100.0       0       0  511.3  16.1  256  140-405   503-779 (802)
 15 CHL00195 ycf46 Ycf46; Provisio 100.0       0       0  482.8  19.7  240  141-388   221-463 (491)
 16 TIGR01243 CDC48 AAA family ATP 100.0       0       0  483.3  18.9  372  141-523   199-692 (980)
 17 KOG0729 consensus              100.0       0       0  481.4  12.4  260  137-396   166-426 (435)
 18 KOG0738 consensus              100.0       0       0  468.5  19.7  260  139-408   203-487 (491)
 19 KOG0726 consensus              100.0       0       0  476.7  12.9  253  140-392   177-430 (440)
 20 KOG0727 consensus              100.0       0       0  470.1  17.5  250  140-389   147-397 (408)
 21 COG0464 SpoVK ATPases of the A 100.0       0       0  467.2  18.9  246  140-388   234-483 (494)
 22 KOG0652 consensus              100.0       0       0  471.7  14.2  252  139-390   162-414 (424)
 23 KOG0728 consensus              100.0       0       0  460.8  17.9  251  140-390   139-390 (404)
 24 KOG0735 consensus              100.0       0       0  461.5  16.6  228  142-372   661-889 (952)
 25 COG1223 Predicted ATPase (AAA+ 100.0       0       0  441.8  17.3  242  139-387   112-354 (368)
 26 pfam01434 Peptidase_M41 Peptid 100.0       0       0  430.2  20.0  192  397-588     1-192 (192)
 27 KOG0737 consensus              100.0       0       0  409.0  15.9  250  136-390    80-334 (386)
 28 KOG0739 consensus              100.0       0       0  413.4   9.0  230  139-374   124-356 (439)
 29 KOG0651 consensus              100.0       0       0  409.3  10.0  246  143-388   127-373 (388)
 30 KOG0732 consensus              100.0       0       0  397.0  15.2  250  141-394   258-531 (1080)
 31 KOG0730 consensus              100.0       0       0  383.6  17.6  238  142-390   179-418 (693)
 32 KOG0741 consensus              100.0       0       0  380.0  13.4  298  131-435   200-544 (744)
 33 KOG0740 consensus              100.0 1.4E-45       0  347.8  12.6  245  139-389   144-405 (428)
 34 COG0464 SpoVK ATPases of the A 100.0 7.5E-32 1.9E-36  249.5  13.1  257  167-429     4-270 (494)
 35 pfam00004 AAA ATPase family as 100.0 5.2E-32 1.3E-36  250.6   9.3  130  184-317     1-131 (131)
 36 KOG0743 consensus               99.9 1.8E-25 4.6E-30  203.3  11.5  277   94-387   144-433 (457)
 37 KOG0742 consensus               99.9 7.7E-25   2E-29  198.7  12.8  218  142-372   349-594 (630)
 38 CHL00026 ycf2 Ycf2              99.9 3.9E-24   1E-28  193.6  13.5  309  175-497  1624-1996(2286)
 39 CHL00179 consensus              99.9 2.1E-24 5.4E-29  195.5  10.9  312  175-500  1594-1968(2262)
 40 CHL00178 consensus              99.9 7.3E-24 1.9E-28  191.7  11.0  308  175-496  1452-1829(2133)
 41 KOG0736 consensus               99.9 1.3E-22 3.4E-27  182.5  14.1  229  162-397   412-668 (953)
 42 KOG0744 consensus               99.9   1E-20 2.6E-25  168.9  13.7  236  143-385   133-411 (423)
 43 cd00009 AAA The AAA+ (ATPases   99.8 2.8E-20 7.2E-25  165.7  10.5  129  179-317    17-151 (151)
 44 CHL00181 cbbX CbbX; Provisiona  99.8 1.9E-18 4.9E-23  152.4  15.7  209  146-367    20-253 (287)
 45 KOG0735 consensus               99.8 7.1E-19 1.8E-23  155.6  13.1  238  180-420   430-683 (952)
 46 PRK04195 replication factor C   99.8 3.5E-17 8.8E-22  143.4  18.4  226  145-417    11-251 (403)
 47 PRK13342 recombination factor   99.8 1.9E-17 4.9E-22  145.2  13.7  205  145-389    10-225 (417)
 48 pfam05496 RuvB_N Holliday junc  99.7   2E-16 5.1E-21  137.8  12.3  191  145-368    21-229 (234)
 49 PRK00080 ruvB Holliday junctio  99.7   1E-15 2.6E-20  132.8  15.7  225  145-407    22-265 (328)
 50 PRK13341 recombination factor   99.7 3.1E-16 7.9E-21  136.5  10.3  201  145-387    25-246 (726)
 51 COG2256 MGS1 ATPase related to  99.6 3.2E-15 8.1E-20  129.2  10.7  202  145-388    21-238 (436)
 52 PRK00440 rfc replication facto  99.6 4.3E-14 1.1E-18  121.0  14.1  197  145-385    13-222 (318)
 53 PRK05342 clpX ATP-dependent pr  99.6 4.2E-14 1.1E-18  121.1  11.8  145  136-281    59-215 (411)
 54 PRK05201 hslU ATP-dependent pr  99.6 1.5E-13 3.8E-18  117.1  14.2   95  139-236     5-107 (442)
 55 PRK00411 cdc6 cell division co  99.6 2.6E-13 6.7E-18  115.3  14.4  219  149-390    31-284 (394)
 56 PRK12402 replication factor C   99.5 1.4E-13 3.5E-18  117.3  11.4  183  145-363    12-226 (337)
 57 COG2255 RuvB Holliday junction  99.5 4.4E-13 1.1E-17  113.7  13.9  227  142-406    21-265 (332)
 58 TIGR00763 lon ATP-dependent pr  99.5 1.1E-14 2.7E-19  125.4   5.4  207  147-371   410-668 (941)
 59 PRK10787 DNA-binding ATP-depen  99.5 2.4E-13   6E-18  115.6  12.3  218  146-385   320-579 (784)
 60 PRK05563 DNA polymerase III su  99.5 2.2E-13 5.5E-18  115.9  11.3  204  146-385    14-241 (541)
 61 TIGR02397 dnaX_nterm DNA polym  99.5 2.6E-13 6.7E-18  115.3  11.7  203  146-385    12-241 (363)
 62 KOG2028 consensus               99.5 4.1E-13 1.1E-17  113.9  12.3  207  145-388   135-368 (554)
 63 PRK07270 DNA polymerase III su  99.5   5E-13 1.3E-17  113.2  12.0  204  145-384    12-240 (557)
 64 TIGR00635 ruvB Holliday juncti  99.5 4.5E-13 1.1E-17  113.6  10.5  210  146-389     2-230 (305)
 65 COG0714 MoxR-like ATPases [Gen  99.5 9.5E-14 2.4E-18  118.5   6.8  132  179-330    41-202 (329)
 66 PRK13407 bchI magnesium chelat  99.5 9.7E-13 2.5E-17  111.2  11.7  154  146-330     6-215 (334)
 67 PRK05896 DNA polymerase III su  99.5 2.6E-12 6.7E-17  108.0  13.4  207  142-385    11-241 (613)
 68 PRK07133 DNA polymerase III su  99.5 5.5E-12 1.4E-16  105.7  14.6  204  146-385    16-240 (718)
 69 smart00382 AAA ATPases associa  99.4 5.3E-13 1.4E-17  113.1   8.8  130  181-319     2-148 (148)
 70 PRK08451 DNA polymerase III su  99.4 7.8E-12   2E-16  104.6  14.6  204  146-385    12-239 (523)
 71 COG0466 Lon ATP-dependent Lon   99.4 1.7E-12 4.4E-17  109.3  11.0  164  148-332   323-509 (782)
 72 PRK06674 DNA polymerase III su  99.4 1.4E-12 3.6E-17  110.0  10.4  205  145-385    13-241 (563)
 73 PRK06645 DNA polymerase III su  99.4 4.5E-12 1.2E-16  106.3  13.0  221  135-398    12-261 (507)
 74 TIGR03346 chaperone_ClpB ATP-d  99.4 1.3E-12 3.3E-17  110.3   9.8  159  146-329   171-347 (852)
 75 TIGR02903 spore_lon_C ATP-depe  99.4 2.3E-13 5.9E-18  115.7   5.8  284  146-465   153-501 (616)
 76 PRK06305 DNA polymerase III su  99.4 1.3E-11 3.2E-16  103.1  14.6  203  145-385    14-243 (462)
 77 KOG2004 consensus               99.4 7.8E-13   2E-17  111.9   7.7  163  148-333   411-598 (906)
 78 PRK06647 DNA polymerase III su  99.4 5.8E-12 1.5E-16  105.6  11.9  203  145-385    13-241 (560)
 79 PRK10865 protein disaggregatio  99.4 3.8E-12 9.7E-17  106.9   9.6  160  146-330   176-353 (857)
 80 TIGR02639 ClpA ATP-dependent C  99.4 2.1E-12 5.4E-17  108.7   8.0  159  146-329   206-384 (774)
 81 TIGR02928 TIGR02928 orc1/cdc6   99.4 5.2E-11 1.3E-15   98.7  14.9  225  149-391    18-292 (383)
 82 TIGR02902 spore_lonB ATP-depen  99.4 8.4E-12 2.1E-16  104.4  10.8  299  141-506    59-424 (532)
 83 COG1224 TIP49 DNA helicase TIP  99.4 1.5E-11 3.9E-16  102.5  12.0   73  147-226    38-112 (450)
 84 PRK11034 clpA ATP-dependent Cl  99.4 4.9E-12 1.3E-16  106.1   9.4  220  147-392   185-436 (758)
 85 CHL00095 clpC Clp protease ATP  99.4 7.6E-12   2E-16  104.7  10.0  159  146-329   177-352 (823)
 86 PRK10865 protein disaggregatio  99.3 7.8E-11   2E-15   97.4  14.4  159  149-332   569-780 (857)
 87 PRK05564 DNA polymerase III su  99.3 3.2E-11 8.2E-16  100.2  12.2  173  145-352     1-183 (313)
 88 CHL00081 chlI Mg-protoporyphyr  99.3 3.5E-11 8.9E-16   99.9  12.2  159  142-331     6-227 (347)
 89 pfam07728 AAA_5 AAA domain (dy  99.3 1.9E-12 4.8E-17  109.1   4.7  110  183-309     1-139 (139)
 90 PRK11034 clpA ATP-dependent Cl  99.3 2.4E-10   6E-15   93.9  15.2  124  150-296   460-608 (758)
 91 TIGR03346 chaperone_ClpB ATP-d  99.3 1.2E-10   3E-15   96.1  13.6  125  149-296   566-718 (852)
 92 COG0542 clpA ATP-binding subun  99.3 3.4E-11 8.7E-16  100.0  10.3  162  144-329   166-344 (786)
 93 PRK07764 DNA polymerase III su  99.3 1.3E-10 3.4E-15   95.7  12.5  188  145-364    12-225 (775)
 94 TIGR03345 VI_ClpV1 type VI sec  99.3 2.2E-10 5.7E-15   94.1  13.3  160  146-330   185-362 (852)
 95 CHL00095 clpC Clp protease ATP  99.3 2.7E-10   7E-15   93.4  13.4  126  148-296   509-662 (823)
 96 pfam07724 AAA_2 AAA domain (Cd  99.3 1.1E-11 2.9E-16  103.5   6.1  101  182-296     4-126 (168)
 97 PRK00149 dnaA chromosomal repl  99.2 6.6E-10 1.7E-14   90.7  14.8  221  140-390   111-348 (447)
 98 COG0542 clpA ATP-binding subun  99.2   6E-10 1.5E-14   91.0  14.2  126  148-296   491-644 (786)
 99 pfam00308 Bac_DnaA Bacterial d  99.2 2.8E-10   7E-15   93.4  12.4  194  142-363     2-211 (219)
100 TIGR03345 VI_ClpV1 type VI sec  99.2 1.3E-10 3.3E-15   95.8  10.0  126  148-296   566-719 (852)
101 TIGR03420 DnaA_homol_Hda DnaA   99.2 7.8E-10   2E-14   90.2  13.1  206  142-384     9-224 (226)
102 KOG0989 consensus               99.2 1.2E-10   3E-15   96.1   8.2  178  145-360    33-227 (346)
103 PRK13765 ATP-dependent proteas  99.2 8.5E-10 2.2E-14   89.9  12.5  101  287-387   278-399 (637)
104 TIGR02881 spore_V_K stage V sp  99.2 4.5E-10 1.1E-14   91.9  11.0  224  146-382     4-254 (261)
105 PRK08853 DNA polymerase III su  99.2 6.1E-10 1.5E-14   90.9  11.3  196  146-382    14-238 (717)
106 COG1474 CDC6 Cdc6-related prot  99.2   1E-09 2.7E-14   89.2  12.4  215  150-388    19-265 (366)
107 COG0593 DnaA ATPase involved i  99.1   6E-09 1.5E-13   83.7  15.7  225  140-390    79-315 (408)
108 PRK09111 DNA polymerase III su  99.1 9.4E-10 2.4E-14   89.6  11.3  205  135-383    14-251 (600)
109 COG1219 ClpX ATP-dependent pro  99.1 6.2E-11 1.6E-15   98.1   5.0  144  136-281    48-203 (408)
110 pfam07726 AAA_3 ATPase family   99.1 2.5E-11 6.4E-16  101.0   1.9  110  183-309     1-129 (131)
111 TIGR02639 ClpA ATP-dependent C  99.1   3E-09 7.7E-14   85.9  12.2  175  141-333   475-707 (774)
112 COG0606 Predicted ATPase with   99.1 1.3E-09 3.2E-14   88.6  10.1   47  144-204   175-221 (490)
113 TIGR00382 clpX ATP-dependent C  99.1 1.1E-10 2.9E-15   96.2   4.5  173  139-318    91-311 (452)
114 PRK07003 DNA polymerase III su  99.1 2.4E-09   6E-14   86.7  11.0  186  145-364    13-224 (816)
115 COG2812 DnaX DNA polymerase II  99.1 8.1E-09 2.1E-13   82.8  13.6  187  145-368    13-228 (515)
116 PRK07994 DNA polymerase III su  99.1 7.4E-10 1.9E-14   90.3   8.3  183  146-364    14-224 (643)
117 PRK09112 DNA polymerase III su  99.1 2.6E-09 6.5E-14   86.4  11.1  181  145-355    20-237 (352)
118 PRK08691 DNA polymerase III su  99.1 7.9E-10   2E-14   90.1   8.2  185  146-364    14-224 (704)
119 KOG0741 consensus               99.1 5.5E-09 1.4E-13   84.0  12.3  139  180-328   537-683 (744)
120 PRK11331 5-methylcytosine-spec  99.0 7.6E-10 1.9E-14   90.2   7.7  130  177-321   190-362 (459)
121 PRK07940 DNA polymerase III su  99.0 3.9E-09 9.9E-14   85.1  11.2  183  146-355     3-212 (395)
122 PRK12323 DNA polymerase III su  99.0 1.3E-09 3.3E-14   88.6   8.1  202  145-383    13-244 (721)
123 KOG1942 consensus               99.0 1.6E-08   4E-13   80.7  13.6   72  147-225    37-110 (456)
124 COG1220 HslU ATP-dependent pro  99.0 1.3E-08 3.3E-13   81.3  12.8   90  146-238    12-109 (444)
125 PRK12422 chromosomal replicati  99.0   2E-08 5.2E-13   79.9  13.8  224  141-388   104-343 (455)
126 PRK08903 hypothetical protein;  99.0 5.2E-09 1.3E-13   84.2  10.5  170  184-385    45-223 (227)
127 PRK05642 DNA replication initi  99.0 3.5E-08 8.8E-13   78.2  14.4  209  141-385    12-232 (234)
128 PRK08084 DNA replication initi  99.0 3.8E-08 9.8E-13   77.9  14.3  202  142-385    16-233 (235)
129 pfam05673 DUF815 Protein of un  99.0 2.1E-08 5.3E-13   79.8  12.5  163  143-335    23-210 (248)
130 pfam01078 Mg_chelatase Magnesi  99.0 1.9E-09 4.9E-14   87.3   7.0   44  147-204     2-45  (207)
131 PRK11388 DNA-binding transcrip  99.0 2.4E-08 6.2E-13   79.3  12.3  212  142-386   319-569 (639)
132 PRK08770 DNA polymerase III su  98.9 4.9E-09 1.2E-13   84.4   8.3  201  146-383    14-239 (663)
133 PRK08058 DNA polymerase III su  98.9 1.2E-08   3E-13   81.7   9.7  152  145-328     2-179 (329)
134 PRK05648 DNA polymerase III su  98.9 1.1E-08 2.7E-13   81.9   9.0  201  145-383    13-239 (705)
135 KOG1969 consensus               98.9 1.1E-07 2.8E-12   74.7  14.2  199  145-373   268-520 (877)
136 PRK08727 hypothetical protein;  98.9 1.6E-07   4E-12   73.5  14.9  201  142-385    13-228 (233)
137 PRK09862 putative ATP-dependen  98.9   8E-08   2E-12   75.6  13.4   49  142-204   185-233 (506)
138 PRK06872 DNA polymerase III su  98.9 1.2E-08 3.2E-13   81.4   8.8  187  146-365    14-225 (696)
139 pfam05621 TniB Bacterial TniB   98.9 7.3E-08 1.9E-12   75.9  12.6  217  150-384    36-285 (302)
140 COG0470 HolB ATPase involved i  98.9 2.1E-08 5.2E-13   79.9   9.7  146  149-325     2-175 (325)
141 PRK07471 DNA polymerase III su  98.9 7.5E-09 1.9E-13   83.0   7.4  194  145-357    14-235 (363)
142 pfam06068 TIP49 TIP49 C-termin  98.9 2.9E-09 7.5E-14   86.0   5.3   81  148-236    24-106 (395)
143 PRK06893 DNA replication initi  98.8 2.7E-07 6.9E-12   71.8  13.8  178  182-385    40-227 (229)
144 PRK11361 acetoacetate metaboli  98.8 3.1E-07 7.8E-12   71.4  14.0  211  146-386   141-391 (457)
145 TIGR03015 pepcterm_ATPase puta  98.8 2.9E-07 7.5E-12   71.5  13.4  196  177-388    38-266 (269)
146 KOG1051 consensus               98.8 5.6E-08 1.4E-12   76.7   9.0  159  148-330   186-362 (898)
147 pfam00493 MCM MCM2/3/5 family.  98.8 4.9E-08 1.2E-12   77.2   8.5  158  149-329    25-219 (327)
148 KOG0745 consensus               98.7 2.1E-08 5.4E-13   79.8   5.7  120  182-302   227-364 (564)
149 PRK08116 hypothetical protein;  98.7 4.2E-08 1.1E-12   77.6   7.0  115  163-296    94-215 (262)
150 PRK08939 primosomal protein Dn  98.7 2.6E-08 6.6E-13   79.2   5.6  138  143-301   123-268 (306)
151 PRK10820 DNA-binding transcrip  98.7 5.2E-08 1.3E-12   76.9   6.4  208  143-381   199-440 (513)
152 PRK07399 DNA polymerase III su  98.7 3.2E-07 8.2E-12   71.2  10.2  181  146-359     2-221 (314)
153 COG2607 Predicted ATPase (AAA+  98.7 1.4E-06 3.6E-11   66.5  13.3  167  141-337    53-245 (287)
154 PRK07952 DNA replication prote  98.6 1.1E-07 2.8E-12   74.6   7.4  131  144-296    65-202 (242)
155 PRK06620 hypothetical protein;  98.6 1.1E-06 2.7E-11   67.5  11.8  182  161-385    25-213 (214)
156 PRK04132 replication factor C   98.6 3.7E-08 9.4E-13   78.0   4.2   91  146-254    23-124 (863)
157 PRK09087 hypothetical protein;  98.6 1.2E-06   3E-11   67.2  11.7  199  142-387    15-221 (226)
158 COG1239 ChlI Mg-chelatase subu  98.6 3.5E-07 8.9E-12   71.0   8.9  228  142-421    11-306 (423)
159 PRK10365 transcriptional regul  98.6   2E-06 5.2E-11   65.4  12.0  206  150-385   141-386 (441)
160 KOG1514 consensus               98.6 1.7E-06 4.4E-11   65.9  11.6  195  183-390   424-657 (767)
161 PRK11608 pspF phage shock prot  98.6 4.8E-07 1.2E-11   70.0   8.5  147  148-324     6-183 (325)
162 PRK10923 glnG nitrogen regulat  98.5 1.1E-06 2.7E-11   67.5   9.8  210  146-385   136-385 (469)
163 TIGR02442 Cob-chelat-sub cobal  98.5 5.7E-07 1.4E-11   69.5   8.2  150  147-331     3-219 (688)
164 PRK05022 anaerobic nitric oxid  98.5 4.5E-07 1.1E-11   70.2   7.6  194  148-371   186-422 (510)
165 PRK06835 DNA replication prote  98.5 7.4E-07 1.9E-11   68.6   8.5  124  155-297   160-290 (330)
166 TIGR00390 hslU heat shock prot  98.5 1.1E-07 2.8E-12   74.6   4.2   89  146-237     9-105 (463)
167 COG1221 PspF Transcriptional r  98.5 8.5E-07 2.2E-11   68.2   8.4  199  141-368    71-309 (403)
168 COG3829 RocR Transcriptional r  98.5 4.2E-07 1.1E-11   70.4   6.1  210  143-385   240-495 (560)
169 KOG2680 consensus               98.4 3.8E-06 9.7E-11   63.4  10.7  185  148-352    40-253 (454)
170 PRK06871 DNA polymerase III su  98.4 2.3E-06 5.8E-11   65.1   9.5  134  178-330    20-177 (324)
171 PTZ00112 origin recognition co  98.4 2.4E-06   6E-11   65.0   9.2  227  139-389   253-514 (650)
172 COG1484 DnaC DNA replication p  98.4 4.3E-07 1.1E-11   70.3   5.4   72  180-252   104-179 (254)
173 PRK09183 transposase/IS protei  98.4 9.3E-07 2.4E-11   67.9   6.7  101  181-296   101-205 (258)
174 PRK08769 DNA polymerase III su  98.4 4.1E-06   1E-10   63.3   9.5  133  177-328    22-182 (319)
175 PRK05707 DNA polymerase III su  98.4 2.7E-06 6.9E-11   64.5   8.4  133  178-329    19-176 (328)
176 pfam03969 AFG1_ATPase AFG1-lik  98.4 2.5E-06 6.3E-11   64.8   8.1  137  179-344    59-205 (361)
177 pfam01695 IstB IstB-like ATP b  98.3 1.1E-06 2.8E-11   67.4   6.0  101  180-296    46-150 (178)
178 TIGR00368 TIGR00368 Mg chelata  98.3 1.6E-07   4E-12   73.5   1.6   48  143-204   189-236 (505)
179 PRK07132 DNA polymerase III su  98.3 4.7E-06 1.2E-10   62.8   9.1  142  162-327     5-160 (303)
180 TIGR02880 cbbX_cfxQ CbbX prote  98.3 8.5E-06 2.2E-10   60.9  10.2  210  147-367    21-252 (284)
181 PRK06526 transposase; Provisio  98.3 1.5E-06 3.9E-11   66.3   6.3  100  181-296    98-201 (254)
182 PRK06921 hypothetical protein;  98.3 6.6E-06 1.7E-10   61.7   9.1  102  181-295   116-223 (265)
183 PRK08181 transposase; Validate  98.3 1.8E-06 4.5E-11   65.9   6.1  100  181-296   106-209 (269)
184 PRK05917 DNA polymerase III su  98.3 3.7E-05 9.4E-10   56.3  12.5  116  178-309    16-149 (290)
185 KOG0991 consensus               98.3 2.6E-05 6.7E-10   57.4  11.5  235  145-435    24-280 (333)
186 smart00350 MCM minichromosome   98.2 1.3E-05 3.4E-10   59.6   9.4  165  149-334   204-407 (509)
187 KOG2383 consensus               98.2 9.4E-06 2.4E-10   60.6   8.1  175  178-392   111-318 (467)
188 KOG0990 consensus               98.2 4.1E-05   1E-09   56.0  11.4  161  139-332    32-204 (360)
189 PRK06090 DNA polymerase III su  98.2 1.5E-05 3.9E-10   59.1   9.0  134  177-329    21-178 (319)
190 PRK12377 putative replication   98.2 1.6E-06 4.2E-11   66.1   3.9  132  143-296    69-206 (248)
191 pfam03215 Rad17 Rad17 cell cyc  98.2 6.5E-05 1.6E-09   54.6  12.1  204  145-372    16-263 (490)
192 pfam01637 Arch_ATPase Archaeal  98.2 8.4E-05 2.1E-09   53.7  12.5  176  157-353     5-217 (223)
193 pfam00158 Sigma54_activat Sigm  98.2 3.5E-06 8.9E-11   63.7   5.1  120  178-315    19-160 (168)
194 PRK08699 DNA polymerase III su  98.2 8.9E-06 2.3E-10   60.8   7.2  132  178-328    18-182 (325)
195 PRK06964 DNA polymerase III su  98.1 1.9E-05 4.8E-10   58.5   8.4  136  174-328    14-201 (342)
196 PRK07993 DNA polymerase III su  98.1 2.4E-05 6.2E-10   57.7   8.7  134  178-330    21-179 (334)
197 KOG2227 consensus               98.1 0.00023 5.7E-09   50.6  13.1  180  158-355   157-364 (529)
198 PRK13531 regulatory ATPase Rav  98.0 8.4E-07 2.1E-11   68.2  -0.1  128  176-320    34-182 (498)
199 COG3604 FhlA Transcriptional r  98.0 1.7E-05 4.3E-10   58.8   6.3  197  141-368   216-456 (550)
200 COG2204 AtoC Response regulato  98.0 4.5E-05 1.1E-09   55.7   7.9  150  145-324   138-318 (464)
201 PHA02244 ATPase-like protein    97.9 4.4E-05 1.1E-09   55.8   7.2  124  178-322   118-263 (383)
202 COG3267 ExeA Type II secretory  97.9 0.00045 1.2E-08   48.4  12.0  187  181-382    50-267 (269)
203 PRK13406 bchD magnesium chelat  97.9 0.00031   8E-09   49.6  10.9  182  182-390    26-252 (584)
204 pfam06480 FtsH_ext FtsH Extrac  97.9 0.00034 8.6E-09   49.4  11.0   70   17-86     20-102 (104)
205 KOG1968 consensus               97.9 1.1E-05 2.8E-10   60.1   3.3  199  145-367   317-535 (871)
206 TIGR01818 ntrC nitrogen regula  97.8 4.5E-05 1.2E-09   55.7   5.7  205  148-385   135-382 (471)
207 COG1485 Predicted ATPase [Gene  97.7 0.00012 3.1E-09   52.6   6.6  198  133-357    10-224 (367)
208 KOG1051 consensus               97.7 0.00011 2.9E-09   52.8   6.1  127  148-296   562-711 (898)
209 cd01393 recA_like RecA is a  b  97.7 9.9E-05 2.5E-09   53.2   5.7   34  175-208    11-46  (226)
210 pfam08298 AAA_PrkA PrkA AAA do  97.7 6.6E-05 1.7E-09   54.5   4.5   84  145-235    55-141 (358)
211 KOG0732 consensus               97.7 3.7E-06 9.5E-11   63.5  -1.9  189  179-371   529-740 (1080)
212 pfam06745 KaiC KaiC. This fami  97.6 0.00056 1.4E-08   47.8   9.0   40  175-214    11-56  (231)
213 KOG1970 consensus               97.6 0.00058 1.5E-08   47.7   9.0  204  146-368    80-320 (634)
214 pfam00931 NB-ARC NB-ARC domain  97.6  0.0011 2.8E-08   45.7  10.4  246  158-443     3-281 (285)
215 COG5245 DYN1 Dynein, heavy cha  97.6 0.00013 3.3E-09   52.4   5.2  203  146-362  1453-1710(3164)
216 PRK08533 flagellar accessory p  97.5 0.00023   6E-09   50.5   6.0  132  167-309     8-175 (230)
217 cd00464 SK Shikimate kinase (S  97.5  0.0001 2.6E-09   53.1   4.2   46  184-234     2-47  (154)
218 COG2074 2-phosphoglycerate kin  97.5    0.01 2.6E-07   38.7  15.0  181  177-389    85-282 (299)
219 pfam00910 RNA_helicase RNA hel  97.5 7.8E-05   2E-09   54.0   3.5   86  184-295     1-105 (105)
220 TIGR02640 gas_vesic_GvpN gas v  97.5 4.1E-05 1.1E-09   56.0   1.9  144  168-333    12-200 (265)
221 PRK05057 aroK shikimate kinase  97.5 0.00013 3.3E-09   52.4   4.1   43  181-225     4-46  (172)
222 PRK09302 circadian clock prote  97.5  0.0011 2.8E-08   45.6   8.9   73  181-253    24-136 (501)
223 PRK09361 radB DNA repair and r  97.5 0.00093 2.4E-08   46.2   8.2   40  175-214    15-59  (224)
224 PRK00131 aroK shikimate kinase  97.5 0.00014 3.5E-09   52.2   3.9   51  180-235     3-53  (175)
225 KOG0478 consensus               97.5  0.0017 4.3E-08   44.3   9.5  119  182-321   463-616 (804)
226 COG1373 Predicted ATPase (AAA+  97.5   0.013 3.3E-07   37.9  14.5  125  176-324    33-160 (398)
227 TIGR00678 holB DNA polymerase   97.4 0.00041   1E-08   48.7   6.1  154  177-354    10-214 (216)
228 PRK13947 shikimate kinase; Pro  97.4 0.00017 4.3E-09   51.5   3.9   40  182-223     2-41  (171)
229 PRK13948 shikimate kinase; Pro  97.4 0.00022 5.6E-09   50.7   4.5   53  179-236     8-60  (182)
230 pfam02562 PhoH PhoH-like prote  97.4 0.00031   8E-09   49.6   5.2   21  184-204    22-42  (205)
231 TIGR02173 cyt_kin_arch cytidyl  97.4 8.9E-05 2.3E-09   53.6   2.3   29  184-212     3-31  (173)
232 PRK13946 shikimate kinase; Pro  97.4 0.00021 5.3E-09   50.9   4.1   49  182-235    21-69  (195)
233 PRK13949 shikimate kinase; Pro  97.4 0.00023 5.9E-09   50.5   4.3   49  182-235     2-50  (169)
234 COG1241 MCM2 Predicted ATPase   97.4 0.00054 1.4E-08   47.9   6.2  250  183-512   321-608 (682)
235 COG3284 AcoR Transcriptional a  97.4  0.0012 3.1E-08   45.3   7.8  183  183-386   338-555 (606)
236 cd01394 radB RadB. The archaea  97.3  0.0013 3.4E-08   45.1   7.8   40  175-214    11-55  (218)
237 cd01124 KaiC KaiC is a circadi  97.3 0.00045 1.2E-08   48.4   5.3   30  184-213     2-34  (187)
238 pfam05729 NACHT NACHT domain.   97.3  0.0036 9.3E-08   41.9   9.8  139  182-332     1-163 (165)
239 KOG0480 consensus               97.3  0.0011 2.7E-08   45.8   6.7  164  144-329   341-540 (764)
240 pfam00448 SRP54 SRP54-type pro  97.3   0.001 2.6E-08   46.0   6.5  114  181-306     1-137 (196)
241 TIGR00602 rad24 checkpoint pro  97.2 0.00028 7.1E-09   50.0   3.5   58  146-210    87-147 (670)
242 cd01428 ADK Adenylate kinase (  97.2 0.00093 2.4E-08   46.2   6.1  118  184-329     2-125 (194)
243 PRK03731 aroL shikimate kinase  97.2 0.00035 8.9E-09   49.2   3.8   44  180-225     1-44  (172)
244 COG2274 SunT ABC-type bacterio  97.2  0.0079   2E-07   39.5  10.3   43  452-497   539-587 (709)
245 KOG0477 consensus               97.2  0.0064 1.6E-07   40.1   9.6  138  183-335   484-654 (854)
246 cd01120 RecA-like_NTPases RecA  97.1  0.0018 4.7E-08   44.0   6.7   72  184-255     2-100 (165)
247 PRK00625 shikimate kinase; Pro  97.1 0.00053 1.4E-08   47.9   3.8   31  183-213     2-32  (173)
248 cd01123 Rad51_DMC1_radA Rad51_  97.1  0.0013 3.4E-08   45.1   5.8   32  176-207    12-45  (235)
249 TIGR02974 phageshock_pspF psp   97.1  0.0009 2.3E-08   46.3   4.9  161  171-360    13-210 (349)
250 COG0563 Adk Adenylate kinase a  97.1  0.0017 4.4E-08   44.2   6.3   30  183-212     2-31  (178)
251 smart00763 AAA_PrkA PrkA AAA d  97.1 0.00068 1.7E-08   47.2   4.2   62  146-214    48-118 (361)
252 PRK12724 flagellar biosynthesi  97.1   0.003 7.5E-08   42.6   7.4  153  169-336   211-389 (432)
253 cd03246 ABCC_Protease_Secretio  97.1  0.0029 7.3E-08   42.7   7.3  123  173-316    18-169 (173)
254 TIGR03375 type_I_sec_LssB type  97.1  0.0053 1.3E-07   40.7   8.5   50  453-505   532-589 (694)
255 PRK02496 adk adenylate kinase;  97.1  0.0027 6.8E-08   42.9   7.0  118  182-328     2-127 (185)
256 COG0703 AroK Shikimate kinase   97.1 0.00069 1.8E-08   47.1   4.0   51  182-237     3-53  (172)
257 cd03115 SRP The signal recogni  97.1  0.0013 3.3E-08   45.1   5.4  110  184-305     3-135 (173)
258 PRK06067 flagellar accessory p  97.1  0.0016 4.1E-08   44.5   5.8   51  147-203     2-54  (241)
259 TIGR01817 nifA Nif-specific re  97.0 0.00034 8.8E-09   49.3   2.3  212  141-383   205-457 (574)
260 cd01121 Sms Sms (bacterial rad  97.0  0.0058 1.5E-07   40.4   8.5  117  176-295    75-211 (372)
261 cd03223 ABCD_peroxisomal_ALDP   97.0  0.0045 1.1E-07   41.2   7.9  119  173-316    17-161 (166)
262 PRK10536 hypothetical protein;  97.0  0.0012   3E-08   45.5   4.8   23  183-205    76-98  (262)
263 pfam08423 Rad51 Rad51. Rad51 i  97.0  0.0025 6.4E-08   43.1   6.3   35  174-208    34-70  (261)
264 cd03278 ABC_SMC_barmotin Barmo  97.0  0.0047 1.2E-07   41.1   7.5   18  293-317   173-190 (197)
265 pfam00437 GSPII_E Type II/IV s  96.9  0.0018 4.7E-08   44.0   5.1  188   28-249    12-218 (283)
266 PRK08118 topology modulation p  96.9 0.00077   2E-08   46.8   3.1  101  182-332     2-102 (167)
267 PTZ00111 DNA replication licen  96.9  0.0061 1.6E-07   40.3   7.8  287  183-516   495-825 (916)
268 PRK04328 hypothetical protein;  96.9 0.00078   2E-08   46.7   3.2   29  176-204    17-47  (250)
269 PRK12723 flagellar biosynthesi  96.9   0.011 2.8E-07   38.5   9.0  169  180-361   173-379 (388)
270 PRK11823 DNA repair protein Ra  96.9  0.0076 1.9E-07   39.6   8.2  118  175-295    82-218 (454)
271 cd03227 ABC_Class2 ABC-type Cl  96.9  0.0015 3.8E-08   44.7   4.4  116  173-302    11-147 (162)
272 KOG2170 consensus               96.9   0.007 1.8E-07   39.8   7.7   94  150-252    84-190 (344)
273 TIGR02031 BchD-ChlD magnesium   96.9   0.021 5.4E-07   36.3  10.1  189  182-390    18-311 (705)
274 PRK11248 tauB taurine transpor  96.8  0.0047 1.2E-07   41.1   6.7   31  176-206    20-52  (255)
275 PRK04301 radA DNA repair and r  96.8  0.0033 8.4E-08   42.2   5.8   35  174-208    94-130 (318)
276 PRK08154 anaerobic benzoate ca  96.8  0.0032 8.1E-08   42.3   5.7   44  180-225   132-175 (304)
277 cd03228 ABCC_MRP_Like The MRP   96.8  0.0074 1.9E-07   39.7   7.6  122  172-316    17-168 (171)
278 PRK05703 flhF flagellar biosyn  96.8  0.0026 6.7E-08   42.9   5.0  113  181-308   210-344 (412)
279 pfam00406 ADK Adenylate kinase  96.8  0.0025 6.4E-08   43.0   5.0  112  186-329     1-122 (186)
280 PRK13808 adenylate kinase; Pro  96.8  0.0039   1E-07   41.6   5.9   30  183-212     2-31  (297)
281 PRK13951 bifunctional shikimat  96.8  0.0018 4.5E-08   44.2   4.1   38  184-223     3-40  (488)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE  96.8  0.0096 2.4E-07   38.8   7.8   31  176-206    23-55  (218)
283 cd03238 ABC_UvrA The excision   96.8  0.0041   1E-07   41.6   5.8   33  174-206    12-46  (176)
284 cd02021 GntK Gluconate kinase   96.7 0.00085 2.2E-08   46.4   2.3   30  184-213     2-31  (150)
285 PRK03839 putative kinase; Prov  96.7 0.00066 1.7E-08   47.3   1.5   30  184-213     3-32  (180)
286 cd03231 ABC_CcmA_heme_exporter  96.7   0.021 5.3E-07   36.4   9.1   33  174-206    17-51  (201)
287 KOG3347 consensus               96.7  0.0008   2E-08   46.7   1.8   35  182-218     8-42  (176)
288 PRK13539 cytochrome c biogenes  96.7   0.025 6.4E-07   35.8   9.4   31  176-206    21-53  (206)
289 PRK09825 idnK D-gluconate kina  96.7  0.0011 2.7E-08   45.8   2.2   36  181-218     3-38  (176)
290 cd00983 recA RecA is a  bacter  96.6  0.0047 1.2E-07   41.1   5.5   27  178-204    50-78  (325)
291 TIGR03608 L_ocin_972_ABC putat  96.6   0.015 3.9E-07   37.4   8.1   30  176-205    17-48  (206)
292 COG1067 LonB Predicted ATP-dep  96.6   0.015 3.8E-07   37.5   8.0  223  142-388    98-399 (647)
293 PRK09354 recA recombinase A; P  96.6  0.0045 1.1E-07   41.3   5.3   29  176-204    52-83  (350)
294 pfam03796 DnaB_C DnaB-like hel  96.6   0.011 2.9E-07   38.3   7.3   37  177-213    15-55  (186)
295 cd00267 ABC_ATPase ABC (ATP-bi  96.6  0.0077   2E-07   39.5   6.4  121  175-315    17-153 (157)
296 pfam10236 DAP3 Mitochondrial r  96.6    0.07 1.8E-06   32.6  12.9   42  157-203     4-46  (274)
297 PRK10247 putative ABC transpor  96.6   0.015 3.8E-07   37.5   7.8   30  176-205    26-57  (225)
298 cd03232 ABC_PDR_domain2 The pl  96.6   0.026 6.7E-07   35.7   8.9   31  174-204    24-56  (192)
299 PRK07276 DNA polymerase III su  96.5   0.067 1.7E-06   32.7  10.8  122  163-306    10-155 (290)
300 COG1102 Cmk Cytidylate kinase   96.5  0.0017 4.4E-08   44.3   2.7   36  184-220     3-38  (179)
301 COG0467 RAD55 RecA-superfamily  96.5  0.0015 3.7E-08   44.7   2.3   39  177-215    17-60  (260)
302 PRK08099 nicotinamide-nucleoti  96.5  0.0024 6.2E-08   43.2   3.3   84  168-252   213-313 (411)
303 pfam06309 Torsin Torsin. This   96.5  0.0029 7.3E-08   42.7   3.6   53  146-204    22-76  (127)
304 PRK13764 ATPase; Provisional    96.5  0.0014 3.6E-08   44.8   2.1  149  181-359   259-417 (605)
305 cd03369 ABCC_NFT1 Domain 2 of   96.5    0.02 5.1E-07   36.6   7.8   35  172-206    23-59  (207)
306 COG4650 RtcR Sigma54-dependent  96.5   0.007 1.8E-07   39.8   5.4  103  145-253   162-295 (531)
307 cd04155 Arl3 Arl3 subfamily.    96.4  0.0044 1.1E-07   41.3   4.3  103  183-299    16-128 (173)
308 PRK06995 flhF flagellar biosyn  96.4  0.0062 1.6E-07   40.2   5.0  133  184-331   179-335 (404)
309 PRK07261 topology modulation p  96.4   0.002 5.1E-08   43.8   2.3   99  184-332     3-102 (171)
310 TIGR02329 propionate_PrpR prop  96.4  0.0034 8.5E-08   42.2   3.5  175  123-332   284-499 (658)
311 TIGR01351 adk adenylate kinase  96.4  0.0034 8.8E-08   42.1   3.5  185  184-423     2-201 (232)
312 pfam00625 Guanylate_kin Guanyl  96.4    0.02 5.1E-07   36.6   7.3   25  182-206     2-26  (182)
313 PRK06731 flhF flagellar biosyn  96.4   0.032 8.3E-07   35.0   8.4   25  179-203    73-97  (270)
314 TIGR02237 recomb_radB DNA repa  96.4  0.0024 6.1E-08   43.2   2.6   52  176-235     5-63  (223)
315 pfam01580 FtsK_SpoIIIE FtsK/Sp  96.4   0.014 3.5E-07   37.7   6.4   52  240-298   151-202 (202)
316 cd03251 ABCC_MsbA MsbA is an e  96.3   0.018 4.5E-07   36.9   6.9   33  173-205    18-52  (234)
317 pfam09848 DUF2075 Uncharacteri  96.3  0.0058 1.5E-07   40.4   4.4   91  184-280     4-113 (348)
318 pfam01583 APS_kinase Adenylyls  96.3   0.018 4.7E-07   36.8   6.8  101  184-318     5-109 (157)
319 PRK12339 2-phosphoglycerate ki  96.3    0.11 2.7E-06   31.3  13.8  178  181-389     3-192 (197)
320 cd01130 VirB11-like_ATPase Typ  96.3  0.0041   1E-07   41.6   3.2   74  177-250    21-110 (186)
321 PRK09302 circadian clock prote  96.2   0.005 1.3E-07   40.9   3.6   30  175-204   258-289 (501)
322 cd03288 ABCC_SUR2 The SUR doma  96.2   0.011 2.9E-07   38.3   5.4   35  172-206    36-72  (257)
323 PTZ00088 adenylate kinase 1; P  96.2  0.0025 6.4E-08   43.1   2.0   30  183-212     2-31  (225)
324 cd03293 ABC_NrtD_SsuB_transpor  96.2   0.019 4.9E-07   36.7   6.5   32  175-206    22-55  (220)
325 PRK11545 gntK gluconate kinase  96.2  0.0031 7.8E-08   42.4   2.4   38  180-219     7-44  (177)
326 cd03247 ABCC_cytochrome_bd The  96.2   0.027 6.8E-07   35.7   7.1   34  173-206    18-53  (178)
327 cd01122 GP4d_helicase GP4d_hel  96.2  0.0089 2.3E-07   39.1   4.7   37  177-213    26-66  (271)
328 PRK11889 flhF flagellar biosyn  96.2   0.019 4.9E-07   36.6   6.4  145  180-336   240-407 (436)
329 KOG0482 consensus               96.2   0.098 2.5E-06   31.5  10.0  171  149-334   343-546 (721)
330 pfam05707 Zot Zonular occluden  96.2  0.0091 2.3E-07   39.0   4.7  129  184-325     3-143 (183)
331 PRK00279 adk adenylate kinase;  96.2  0.0028 7.2E-08   42.7   2.0  116  184-328     3-126 (215)
332 cd00984 DnaB_C DnaB helicase C  96.2    0.04   1E-06   34.4   7.9   38  177-214     9-50  (242)
333 PRK13540 cytochrome c biogenes  96.1    0.03 7.6E-07   35.3   7.2   34  173-206    17-52  (200)
334 PRK00300 gmk guanylate kinase;  96.1    0.05 1.3E-06   33.7   8.3   25  182-206     8-32  (208)
335 cd03213 ABCG_EPDR ABCG transpo  96.1    0.05 1.3E-06   33.6   8.3   32  174-205    26-59  (194)
336 cd03292 ABC_FtsE_transporter F  96.1   0.035 8.9E-07   34.8   7.5   29  176-204    20-50  (214)
337 cd03240 ABC_Rad50 The catalyti  96.1   0.047 1.2E-06   33.9   8.0   20  184-203    25-44  (204)
338 PRK13900 type IV secretion sys  96.1   0.011 2.7E-07   38.6   4.7   79  171-249   150-244 (332)
339 cd03249 ABC_MTABC3_MDL1_MDL2 M  96.1   0.032 8.3E-07   35.0   7.1   33  173-205    19-53  (238)
340 cd03253 ABCC_ATM1_transporter   96.1   0.019 4.9E-07   36.7   5.9   33  173-205    17-51  (236)
341 PRK04182 cytidylate kinase; Pr  96.1   0.034 8.7E-07   34.9   7.2   29  184-212     3-31  (178)
342 PRK10790 putative multidrug tr  96.1   0.037 9.3E-07   34.6   7.3   12  490-501   482-493 (593)
343 pfam01057 Parvo_NS1 Parvovirus  96.0  0.0034 8.6E-08   42.1   1.9   25  182-206   114-138 (271)
344 cd03229 ABC_Class3 This class   96.0   0.023 5.9E-07   36.1   6.1   31  175-205    18-50  (178)
345 COG0324 MiaA tRNA delta(2)-iso  96.0   0.088 2.2E-06   31.9   9.0   98  180-294     2-102 (308)
346 COG1936 Predicted nucleotide k  96.0  0.0044 1.1E-07   41.3   2.4   32  184-218     3-34  (180)
347 cd03254 ABCC_Glucan_exporter_l  96.0    0.02 5.1E-07   36.6   5.7   32  174-205    20-53  (229)
348 pfam06414 Zeta_toxin Zeta toxi  96.0  0.0065 1.7E-07   40.1   3.2  128  179-332    10-141 (191)
349 pfam00154 RecA recA bacterial   96.0   0.013 3.4E-07   37.9   4.7   27  176-202    44-73  (322)
350 TIGR02858 spore_III_AA stage I  96.0   0.022 5.6E-07   36.2   5.8  117  161-306   110-250 (282)
351 cd03221 ABCF_EF-3 ABCF_EF-3  E  95.9   0.025 6.4E-07   35.8   6.1  118  174-315    17-140 (144)
352 cd03250 ABCC_MRP_domain1 Domai  95.9   0.028 7.2E-07   35.5   6.3   31  175-205    23-55  (204)
353 PRK10418 nikD nickel transport  95.9    0.03 7.6E-07   35.3   6.4   40  176-215    22-63  (254)
354 cd03233 ABC_PDR_domain1 The pl  95.9   0.061 1.6E-06   33.0   7.9   38  177-215    27-66  (202)
355 PRK12337 2-phosphoglycerate ki  95.9    0.16   4E-06   30.0  14.2  228  156-406   226-481 (492)
356 COG3283 TyrR Transcriptional r  95.9  0.0082 2.1E-07   39.3   3.4  139  145-309   195-354 (511)
357 PRK10789 putative multidrug tr  95.9   0.045 1.2E-06   34.0   7.2   12  490-501   457-468 (569)
358 TIGR03167 tRNA_sel_U_synt tRNA  95.9    0.16 4.1E-06   30.0  12.0  107  182-330   128-244 (311)
359 PRK11160 cysteine/glutathione   95.8   0.034 8.7E-07   34.9   6.4   14  396-409   474-487 (575)
360 COG0468 RecA RecA/RadA recombi  95.8   0.057 1.5E-06   33.2   7.5   35  174-208    51-87  (279)
361 pfam05272 VirE Virulence-assoc  95.8   0.023 5.9E-07   36.1   5.4  143  143-316    13-168 (198)
362 cd04154 Arl2 Arl2 subfamily.    95.8   0.012 3.2E-07   38.0   4.0  105  183-300    16-129 (173)
363 PRK13700 conjugal transfer pro  95.8    0.05 1.3E-06   33.7   7.0   74  173-249   172-254 (732)
364 cd02027 APSK Adenosine 5'-phos  95.8   0.036 9.1E-07   34.7   6.3   21  184-204     2-22  (149)
365 COG1855 ATPase (PilT family) [  95.8  0.0052 1.3E-07   40.8   2.0  224  143-423   242-476 (604)
366 TIGR01842 type_I_sec_PrtD type  95.7   0.023   6E-07   36.0   5.2  143  145-301   283-531 (556)
367 COG3842 PotA ABC-type spermidi  95.7  0.0059 1.5E-07   40.4   2.1   29  176-204    24-54  (352)
368 TIGR01313 therm_gnt_kin carboh  95.7  0.0046 1.2E-07   41.1   1.5   84  184-305     1-89  (175)
369 COG5271 MDN1 AAA ATPase contai  95.7   0.037 9.4E-07   34.6   6.1  133  179-329  1541-1701(4600)
370 cd03222 ABC_RNaseL_inhibitor T  95.7   0.012 3.2E-07   38.0   3.7   68  179-249    21-98  (177)
371 COG1131 CcmA ABC-type multidru  95.6    0.11 2.8E-06   31.1   8.3   32  175-206    23-56  (293)
372 cd03252 ABCC_Hemolysin The ABC  95.6   0.066 1.7E-06   32.8   7.2   33  172-204    17-51  (237)
373 pfam09439 SRPRB Signal recogni  95.6   0.029 7.5E-07   35.3   5.4   64  182-246     4-82  (181)
374 KOG2543 consensus               95.6    0.15 3.8E-06   30.2   8.9  137  179-329    28-191 (438)
375 cd03245 ABCC_bacteriocin_expor  95.6   0.043 1.1E-06   34.1   6.1   33  173-205    20-54  (220)
376 COG3854 SpoIIIAA ncharacterize  95.6  0.0083 2.1E-07   39.3   2.4   69  182-250   138-228 (308)
377 pfam01745 IPT Isopentenyl tran  95.5   0.024 6.1E-07   36.0   4.6  121  184-322     4-130 (232)
378 PRK03846 adenylylsulfate kinas  95.5   0.074 1.9E-06   32.4   7.0  107  179-319    22-132 (198)
379 PRK13657 cyclic beta-1,2-gluca  95.5   0.073 1.9E-06   32.5   7.0   13  559-571   524-536 (585)
380 TIGR00362 DnaA chromosomal rep  95.5    0.22 5.7E-06   29.0  13.2  141  177-332   176-327 (493)
381 PRK11174 cysteine/glutathione   95.5   0.066 1.7E-06   32.8   6.7   14  396-409   483-496 (588)
382 PRK05818 DNA polymerase III su  95.4    0.11 2.9E-06   31.1   7.9  179  179-383     6-210 (262)
383 cd03230 ABC_DR_subfamily_A Thi  95.4    0.12 3.1E-06   30.8   8.0  108  176-300    19-159 (173)
384 cd03291 ABCC_CFTR1 The CFTR su  95.4   0.057 1.5E-06   33.2   6.3   33  174-206    54-88  (282)
385 cd03214 ABC_Iron-Siderophores_  95.3   0.069 1.8E-06   32.7   6.5   33  174-206    16-50  (180)
386 cd03248 ABCC_TAP TAP, the Tran  95.3   0.049 1.3E-06   33.7   5.7   28  177-204    34-63  (226)
387 TIGR01743 purR_Bsub pur operon  95.3   0.042 1.1E-06   34.2   5.3  132  143-297    65-238 (269)
388 PRK09401 reverse gyrase; Revie  95.3    0.26 6.5E-06   28.5   9.4   10  509-518   916-925 (1176)
389 COG4178 ABC-type uncharacteriz  95.3    0.01 2.6E-07   38.6   2.0   15   67-81     68-82  (604)
390 KOG3928 consensus               95.3   0.016   4E-07   37.3   3.0   36  178-213   176-212 (461)
391 cd03283 ABC_MutS-like MutS-lik  95.2   0.036 9.3E-07   34.7   4.8  107  180-300    24-152 (199)
392 cd00071 GMPK Guanosine monopho  95.2    0.03 7.7E-07   35.2   4.3   26  184-209     2-27  (137)
393 PRK09544 znuC high-affinity zi  95.2   0.092 2.4E-06   31.7   6.7   32  175-206    22-55  (251)
394 smart00072 GuKc Guanylate kina  95.2    0.12   3E-06   30.9   7.3   29  181-209     2-30  (184)
395 PTZ00035 Rad51; Provisional     95.2   0.052 1.3E-06   33.5   5.4   34  176-209   123-158 (350)
396 cd03281 ABC_MSH5_euk MutS5 hom  95.2   0.099 2.5E-06   31.5   6.8  117  177-307    25-165 (213)
397 PRK13851 type IV secretion sys  95.2   0.017 4.4E-07   37.0   2.9   79  171-249   152-245 (343)
398 COG1127 Ttg2A ABC-type transpo  95.1   0.051 1.3E-06   33.6   5.3   32  174-205    25-58  (263)
399 PRK06217 hypothetical protein;  95.1   0.015 3.8E-07   37.5   2.5   96  182-322     2-97  (185)
400 pfam00488 MutS_V MutS domain V  95.1   0.026 6.6E-07   35.7   3.7  113  179-306    40-175 (234)
401 cd00227 CPT Chloramphenicol (C  95.1   0.021 5.4E-07   36.4   3.2   40  182-221     3-42  (175)
402 KOG2228 consensus               95.1    0.01 2.6E-07   38.7   1.5  139  181-331    49-219 (408)
403 KOG0057 consensus               95.1    0.13 3.4E-06   30.6   7.3   21  452-472   520-540 (591)
404 TIGR02982 heterocyst_DevA ABC   95.1   0.009 2.3E-07   39.1   1.2   28  176-203    24-53  (220)
405 cd02020 CMPK Cytidine monophos  95.0   0.015 3.8E-07   37.5   2.3   29  184-212     2-30  (147)
406 COG1066 Sms Predicted ATP-depe  95.0    0.19 4.7E-06   29.5   7.9  115  172-291    82-217 (456)
407 COG2874 FlaH Predicted ATPases  95.0    0.11 2.9E-06   31.1   6.8   38  167-204    12-51  (235)
408 COG3839 MalK ABC-type sugar tr  95.0   0.014 3.5E-07   37.7   2.0   30  176-205    22-53  (338)
409 KOG3595 consensus               95.0   0.024 6.1E-07   36.0   3.2   34  180-213   464-497 (1395)
410 cd03244 ABCC_MRP_domain2 Domai  94.9    0.11 2.7E-06   31.3   6.4   34  173-206    20-55  (221)
411 TIGR03575 selen_PSTK_euk L-ser  94.9   0.026 6.7E-07   35.7   3.2   35  184-218     2-40  (340)
412 KOG0481 consensus               94.9   0.087 2.2E-06   31.9   5.8  168  183-363   366-580 (729)
413 PRK12727 flagellar biosynthesi  94.8   0.046 1.2E-06   33.9   4.4  134  184-332   351-507 (557)
414 PRK11432 fbpC ferric transport  94.8   0.018 4.6E-07   36.9   2.2   31  176-206    25-57  (351)
415 cd03289 ABCC_CFTR2 The CFTR su  94.8   0.088 2.2E-06   31.9   5.7   33  173-205    20-54  (275)
416 PRK05541 adenylylsulfate kinas  94.8   0.061 1.6E-06   33.0   4.9   23  182-204     8-30  (176)
417 cd03216 ABC_Carb_Monos_I This   94.8    0.13 3.4E-06   30.6   6.5  108  177-298    20-144 (163)
418 cd03217 ABC_FeS_Assembly ABC-t  94.7     0.3 7.7E-06   28.0   8.3   27  178-204    21-49  (200)
419 pfam08433 KTI12 Chromatin asso  94.7    0.11 2.8E-06   31.2   6.0   81  184-298     2-82  (266)
420 TIGR03265 PhnT2 putative 2-ami  94.7   0.018 4.5E-07   36.9   1.9   31  176-206    23-55  (353)
421 PRK05506 bifunctional sulfate   94.7     0.2   5E-06   29.4   7.2   63   25-89     55-121 (613)
422 pfam07931 CPT Chloramphenicol   94.7   0.031 7.9E-07   35.1   3.1   39  183-221     3-41  (174)
423 pfam01202 SKI Shikimate kinase  94.7    0.04   1E-06   34.3   3.7   42  190-236     1-42  (158)
424 cd04157 Arl6 Arl6 subfamily.    94.7   0.039   1E-06   34.4   3.6  105  183-300     1-118 (162)
425 smart00534 MUTSac ATPase domai  94.6    0.13 3.4E-06   30.6   6.3  101  184-299     2-125 (185)
426 PRK06696 uridine kinase; Valid  94.6   0.041   1E-06   34.3   3.7   54  159-218    10-66  (227)
427 cd03286 ABC_MSH6_euk MutS6 hom  94.6   0.047 1.2E-06   33.8   4.0  114  177-306    26-163 (218)
428 cd04161 Arl2l1_Arl13_like Arl2  94.6   0.047 1.2E-06   33.9   3.9  101  184-298     2-112 (167)
429 cd04158 ARD1 ARD1 subfamily.    94.6   0.043 1.1E-06   34.1   3.7  102  184-298     2-112 (169)
430 COG0630 VirB11 Type IV secreto  94.5   0.029 7.5E-07   35.3   2.8  199   26-250    13-227 (312)
431 cd01129 PulE-GspE PulE/GspE Th  94.5   0.056 1.4E-06   33.3   4.2  100  137-250    49-159 (264)
432 cd03287 ABC_MSH3_euk MutS3 hom  94.5   0.056 1.4E-06   33.3   4.1  115  181-310    31-168 (222)
433 cd03284 ABC_MutS1 MutS1 homolo  94.5     0.1 2.6E-06   31.5   5.4  110  182-307    31-164 (216)
434 COG0194 Gmk Guanylate kinase [  94.5    0.11 2.7E-06   31.3   5.5   32  183-215     6-37  (191)
435 pfam02367 UPF0079 Uncharacteri  94.5   0.029 7.3E-07   35.4   2.5   34  175-208     7-42  (123)
436 cd03294 ABC_Pro_Gly_Bertaine T  94.5   0.025 6.3E-07   35.9   2.2   30  176-205    43-74  (269)
437 pfam02456 Adeno_IVa2 Adenoviru  94.4   0.058 1.5E-06   33.2   4.0   82  176-258    83-215 (370)
438 COG4088 Predicted nucleotide k  94.4   0.018 4.6E-07   36.8   1.4   23  184-206     4-26  (261)
439 TIGR03348 VI_IcmF type VI secr  94.3    0.19 4.8E-06   29.5   6.5   41  153-198    83-128 (1169)
440 PRK00023 cmk cytidylate kinase  94.3   0.023 5.9E-07   36.1   1.9   29  184-212     7-35  (225)
441 TIGR03258 PhnT 2-aminoethylpho  94.3   0.028 7.1E-07   35.5   2.2   30  176-205    24-55  (362)
442 TIGR03600 phage_DnaB phage rep  94.2    0.23 5.9E-06   28.8   6.8   28  177-204   190-217 (421)
443 PRK11144 modC molybdate transp  94.2   0.027 6.8E-07   35.6   1.9   29  177-205    18-48  (352)
444 pfam06068 TIP49 TIP49 C-termin  94.1    0.22 5.6E-06   29.0   6.5   87  239-348   274-376 (395)
445 COG1116 TauB ABC-type nitrate/  94.1   0.028 7.1E-07   35.5   1.9   33  174-206    20-54  (248)
446 cd04162 Arl9_Arfrp2_like Arl9/  94.1   0.087 2.2E-06   31.9   4.4  102  184-300     2-113 (164)
447 PRK04220 2-phosphoglycerate ki  94.1    0.49 1.3E-05   26.5  14.0  187  178-389    89-285 (306)
448 pfam00519 PPV_E1_C Papillomavi  94.1   0.044 1.1E-06   34.0   2.9   79  162-248   244-326 (432)
449 cd03280 ABC_MutS2 MutS2 homolo  94.1    0.17 4.3E-06   29.8   5.8  104  181-300    28-155 (200)
450 cd03236 ABC_RNaseL_inhibitor_d  94.1   0.028 7.2E-07   35.4   1.9   34  173-206    15-51  (255)
451 cd01131 PilT Pilus retraction   94.1   0.094 2.4E-06   31.7   4.5   67  184-250     4-84  (198)
452 cd03301 ABC_MalK_N The N-termi  94.1   0.033 8.3E-07   35.0   2.2   32  175-206    18-51  (213)
453 COG1132 MdlB ABC-type multidru  94.1    0.25 6.4E-06   28.6   6.7   37  464-503   413-451 (567)
454 PRK13536 nodulation factor exp  94.1    0.41 1.1E-05   27.0   7.8   31  176-206    26-58  (306)
455 COG1124 DppF ABC-type dipeptid  94.0   0.028 7.2E-07   35.5   1.7   29  178-206    28-58  (252)
456 TIGR01187 potA polyamine ABC t  94.0   0.028 7.1E-07   35.5   1.7   21  186-206     1-21  (331)
457 TIGR03574 selen_PSTK L-seryl-t  94.0   0.067 1.7E-06   32.8   3.6   21  184-204     2-22  (249)
458 cd04105 SR_beta Signal recogni  93.9   0.063 1.6E-06   32.9   3.4   65  183-247     2-80  (203)
459 PRK11650 ugpC glycerol-3-phosp  93.9   0.032 8.3E-07   35.0   1.9   31  176-206    23-55  (358)
460 TIGR03415 ABC_choXWV_ATP choli  93.9   0.036 9.3E-07   34.7   2.2   28  178-205    45-74  (382)
461 PRK10419 nikE nickel transport  93.9   0.033 8.4E-07   35.0   2.0   27  178-204    33-61  (266)
462 KOG3354 consensus               93.9   0.029 7.5E-07   35.3   1.7   36  182-219    13-48  (191)
463 cd04159 Arl10_like Arl10-like   93.9     0.2 5.1E-06   29.3   5.9   63  184-246     2-74  (159)
464 KOG1803 consensus               93.9   0.016 4.1E-07   37.2   0.3   17  182-198   202-218 (649)
465 TIGR03263 guanyl_kin guanylate  93.9   0.041   1E-06   34.3   2.3   31  184-214     4-34  (180)
466 COG3172 NadR Predicted ATPase/  93.8   0.095 2.4E-06   31.6   4.2   68  181-248     8-86  (187)
467 PRK13894 conjugal transfer ATP  93.8    0.04   1E-06   34.4   2.2  182   30-249    26-229 (320)
468 PRK10646 putative ATPase; Prov  93.8   0.046 1.2E-06   33.9   2.5   33  177-209    22-56  (153)
469 pfam03266 DUF265 Protein of un  93.7   0.023 5.8E-07   36.1   0.9   23  184-206     2-24  (168)
470 cd04160 Arfrp1 Arfrp1 subfamil  93.7    0.15 3.8E-06   30.2   5.0   64  184-247     2-82  (167)
471 cd03299 ABC_ModC_like Archeal   93.7   0.042 1.1E-06   34.2   2.2   29  177-205    19-49  (235)
472 PRK01184 hypothetical protein;  93.7   0.045 1.1E-06   34.0   2.3   32  184-218     4-35  (183)
473 cd03296 ABC_CysA_sulfate_impor  93.7   0.043 1.1E-06   34.1   2.2   31  176-206    21-53  (239)
474 cd03290 ABCC_SUR1_N The SUR do  93.7   0.033 8.4E-07   35.0   1.6   34  173-206    17-52  (218)
475 PRK13768 GTPase; Provisional    93.6   0.043 1.1E-06   34.1   2.2   25  180-204     1-25  (253)
476 cd03295 ABC_OpuCA_Osmoprotecti  93.6   0.045 1.2E-06   34.0   2.2   32  175-206    19-52  (242)
477 smart00178 SAR Sar1p-like memb  93.6    0.14 3.6E-06   30.4   4.7  105  180-298    16-130 (184)
478 COG1643 HrpA HrpA-like helicas  93.6    0.12 2.9E-06   31.0   4.2   15  454-468   571-585 (845)
479 PRK11664 ATP-dependent RNA hel  93.6   0.052 1.3E-06   33.5   2.4   13  379-391   455-467 (812)
480 cd03300 ABC_PotA_N PotA is an   93.5   0.047 1.2E-06   33.9   2.2   30  176-205    19-50  (232)
481 PRK08694 consensus              93.5    0.24 6.1E-06   28.7   5.8   37  177-213   214-256 (468)
482 COG1136 SalX ABC-type antimicr  93.5    0.61 1.6E-05   25.8   8.7   67  230-316   150-216 (226)
483 PRK11147 ABC transporter ATPas  93.5    0.04   1E-06   34.4   1.8   24  553-576   486-509 (632)
484 TIGR00390 hslU heat shock prot  93.5   0.032 8.1E-07   35.1   1.3  134  241-389   269-423 (463)
485 cd03257 ABC_NikE_OppD_transpor  93.5   0.049 1.2E-06   33.7   2.2   32  175-206    23-56  (228)
486 cd03297 ABC_ModC_molybdenum_tr  93.5   0.044 1.1E-06   34.1   1.9   22  184-205    26-47  (214)
487 PRK13537 lipooligosaccharide t  93.4    0.42 1.1E-05   27.0   6.9   29  177-205    25-55  (304)
488 TIGR02868 CydC ABC transporter  93.4   0.049 1.3E-06   33.7   2.1   55  141-205   356-411 (566)
489 cd01882 BMS1 Bms1.  Bms1 is an  93.4   0.096 2.4E-06   31.6   3.6   70  177-247    35-112 (225)
490 PRK13648 cbiO cobalt transport  93.4   0.052 1.3E-06   33.5   2.2   31  174-204    26-58  (269)
491 PRK10851 sulfate/thiosulfate t  93.4   0.053 1.4E-06   33.5   2.2   31  176-206    21-53  (352)
492 TIGR02788 VirB11 P-type DNA tr  93.3    0.13 3.2E-06   30.7   4.1  193   35-249     2-243 (328)
493 pfam04851 ResIII Type III rest  93.3   0.094 2.4E-06   31.7   3.4   53  184-252    21-76  (103)
494 COG4619 ABC-type uncharacteriz  93.3   0.057 1.5E-06   33.2   2.3   23  182-204    30-52  (223)
495 pfam00006 ATP-synt_ab ATP synt  93.3   0.044 1.1E-06   34.1   1.7   22  184-205    18-39  (213)
496 cd00878 Arf_Arl Arf (ADP-ribos  93.3    0.21 5.3E-06   29.2   5.1   63  184-246     2-73  (158)
497 cd03237 ABC_RNaseL_inhibitor_d  93.3    0.05 1.3E-06   33.6   2.0   34  173-206    10-50  (246)
498 PRK09452 potA putrescine/sperm  93.3   0.056 1.4E-06   33.3   2.2   20  184-203    46-65  (378)
499 cd04150 Arf1_5_like Arf1-Arf5-  93.2    0.16   4E-06   30.0   4.5  104  184-300     3-115 (159)
500 COG4988 CydD ABC-type transpor  93.2    0.45 1.1E-05   26.8   6.8  118  175-316   341-528 (559)

No 1  
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=100.00  E-value=0  Score=1683.78  Aligned_cols=497  Identities=61%  Similarity=0.968  Sum_probs=488.9

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999-999999999999851677-887-7-7676632100001124225698898528899999999987433
Q gi|254780545|r   94 GLLSYLGSWFP-LVLVVLVWMFLMRQIQGG-GAR-G-AMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCD  169 (647)
Q Consensus        94 ~~~~iL~~~LP-liLli~i~~fl~rr~~gG-g~~-~-~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~  169 (647)
                      +|+.+|++||| +|+|+++|+||+|+|+|+ |++ + +|||||||||++.+++++|||+||||+||+|+||.||||||||
T Consensus         1 ~~~~~l~~~~P~iL~l~g~~~~f~R~~~G~lGG~~~g~f~fGKS~Ak~~~~~~~kv~F~DVAG~dEAKeEl~EiVdFLK~   80 (505)
T TIGR01241         1 SLLGFLFSLLPPILLLIGLFFLFRRQMQGGLGGKGRGAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELVEIVDFLKN   80 (505)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             95777999999999999999999997226788877652565337898730589813223444532333433313422269


Q ss_pred             HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf             56766420123331100378742588899997424699702058578864442033245999999998737801206323
Q gi|254780545|r  170 PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI  249 (647)
Q Consensus       170 ~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDei  249 (647)
                      |+||++||+|||||||||||||||||||||||||||+||||++|||||||||||||||||||||++||++||||||||||
T Consensus        81 P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDLFeqAK~nAPCIIFIDEI  160 (505)
T TIGR01241        81 PSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI  160 (505)
T ss_pred             CHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHHHHHHHHHCCCEEEEECH
T ss_conf             63798727889871473178784246788752025889624740761011120564000144579999718970564010


Q ss_pred             HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             5641445578-988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r  250 DAVGRHRGIG-LGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       250 da~~~~r~~~-~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
                      |||||+||.+ .+||||||||||||||+|||||++++||||||||||||+|||||||||||||||.|++||.+||++||+
T Consensus       161 DAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~~PD~~GR~~IL~  240 (505)
T TIGR01241       161 DAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK  240 (505)
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf             00033356436676541355433233133178589885799850488411651006878744513458887467899999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98548877732110245441203798999999999876455320242104568999750136865567666866778999
Q gi|254780545|r  329 VHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA  408 (647)
Q Consensus       329 ~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vA  408 (647)
                      +|+++++|+++|||..||++|||||||||+||||||||+|+|+|++.|++.||++|+|||++|+||||++||++||+.||
T Consensus       241 VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKsr~is~~eK~~vA  320 (505)
T TIGR01241       241 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKSRVISEKEKKIVA  320 (505)
T ss_pred             HHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEE
T ss_conf             98548899702477999701568767889999999999986179865628889878776522766788532677742220


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHCCCC-CCCCEEEEHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999999998505877323432201455-56405640024-43226899999999999878988888613687565233
Q gi|254780545|r  409 YHEAGHAVVACHVPKADPLHKATIIPRGR-ALGMVMQLPEA-DRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAM  486 (647)
Q Consensus       409 yHEAGHAlva~~l~~~~~v~kVTIipRg~-alG~t~~~p~~-d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs  486 (647)
                      |||||||||+|+++++||||||||||||+ |||||+++|++ |++++||++|+++|.++||||||||++||+++|||||+
T Consensus       321 YHEaGHAl~G~~~~~~DpV~KvTIIPRG~~AlG~t~~lP~~~D~~l~~k~~L~~~i~~~lGGRaAEe~~fG~~~vttGA~  400 (505)
T TIGR01241       321 YHEAGHALVGLLLKDADPVHKVTIIPRGQGALGYTQFLPEEGDKYLYTKKQLLAKIAVLLGGRAAEEIIFGEEEVTTGAS  400 (505)
T ss_pred             EECHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
T ss_conf             11157899997353447523256314784415516836774441003688999999987320310022307887323621


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55899999999998624888766733404-78767434565677678788999999999999999999999999999899
Q gi|254780545|r  487 SDIEYATKLARVMVTQFGFSNLLGKVSYE-EGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKND  565 (647)
Q Consensus       487 ~DL~~AT~iA~~mV~~~GMs~~lG~i~~~-~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~  565 (647)
                      |||+|||+|||+|||+||||++||||.|. +..++.|+|+++...++|||+||+.||+||++||++||++|++||++|++
T Consensus       401 nD~~~AT~iAr~MVT~~GMS~klG~v~~~~~~~~~~flg~~~~~~~~~Se~tA~~ID~EV~~i~~~~Y~~A~~iL~e~~~  480 (505)
T TIGR01241       401 NDLKQATNIARAMVTEWGMSEKLGPVAYGQSDGGEVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRD  480 (505)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15899999999731533674200451220234677679876544412218899999999999999999999999986488


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9999999998885499999999972
Q gi|254780545|r  566 NFVAIAEALLEYETLSGKEIASLIR  590 (647)
Q Consensus       566 ~l~~la~~Lle~EtL~~~ei~~il~  590 (647)
                      .|+.||+.||++|||+.+||++|++
T Consensus       481 ~L~~~a~~Ll~~ETi~~~~~~~l~~  505 (505)
T TIGR01241       481 ELELLAKELLEKETITREEIKELLA  505 (505)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999888763588689999819


No 2  
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00  E-value=0  Score=1480.89  Aligned_cols=609  Identities=54%  Similarity=0.900  Sum_probs=577.1

Q ss_pred             HHHHHH-HHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf             989999-9999972367777774021589999999709915999988979999957980699982688279999999779
Q gi|254780545|r    2 IALCLI-ASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKD   80 (647)
Q Consensus         2 I~ivli-~l~~lf~~~~~~~~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~~l~~~L~e~~   80 (647)
                      +|++++ +++.+|..+..+..+.++|+||+|++++++|+|++|.|.++.+.++.+++. .|.++.|..++++.+.|.+++
T Consensus         7 ~~~~i~~~~~~~~~~~~~~~~~~~~i~ys~f~~~~~~~~v~~v~i~~~~i~~~~~~~~-~~~~~~p~~d~~l~~~l~~~~   85 (644)
T PRK10733          7 LWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSN-RYTTYIPVNDPKLLDNLLTKN   85 (644)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCEEEEEEECCEEEEEECCCC-EEEEECCCCCHHHHHHHHHCC
T ss_conf             9999999999999983678888706539999999984991599995779999986897-699857888879999999749


Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             82899856865218999999999999999999999985167788777676632100001124225698898528899999
Q gi|254780545|r   81 IEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDL  160 (647)
Q Consensus        81 V~v~~~~~~~~s~~~~~iL~~~LPliLli~i~~fl~rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~  160 (647)
                      +++...++. ..++|..++++|+|+++|+++|+||+|+|++||++++|+|||||||++.+++++|||+||+|++++|+||
T Consensus        86 v~~~~~~~~-~~~~~~~~l~~~~p~ll~~~~~~~~~r~~~~gg~~~~~~fgkskak~~~~~~~~vtF~DVaG~~eaK~el  164 (644)
T PRK10733         86 VKVVGEPPE-EPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEV  164 (644)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             848860687-7647999999999999999999999998426788877776766561125778987710408978999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             99998743356766420123331100378742588899997424699702058578864442033245999999998737
Q gi|254780545|r  161 QEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS  240 (647)
Q Consensus       161 ~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~  240 (647)
                      +|+|+|||+|+||+++|+++||||||+|||||||||||||+||||+||||++|||+|+|||||+|++|||+||++||++|
T Consensus       165 ~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~~vGvga~rVR~lF~~Ar~~a  244 (644)
T PRK10733        165 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA  244 (644)
T ss_pred             HHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHEEEECCHHHHHHHHHHHHHCC
T ss_conf             99999812979999749979985177798998778999998645598089978477302225306899999999999669


Q ss_pred             CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHH
Q ss_conf             80120632356414455789886268898899899853032357782999962981008833316564231410001347
Q gi|254780545|r  241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDI  320 (647)
Q Consensus       241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~  320 (647)
                      |||||||||||+|++|+.+.+++||||+|||||||+|||||+.+++|||||||||||.|||||||||||||+|+|++||.
T Consensus       245 P~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~  324 (644)
T PRK10733        245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV  324 (644)
T ss_pred             CEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCH
T ss_conf             97999953220366678988898328887899999995488887876999626997554777716888655999779898


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             88999999985488777321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r  321 VGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT  400 (647)
Q Consensus       321 ~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~  400 (647)
                      ++|++||++|++++|+++|+|++.+|+.|+|||||||+|||||||++|+|++++.|++.||++|+|||++|+|+++++++
T Consensus       325 ~~R~~ILkvh~~~~~l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl~AaR~~k~~It~~d~e~A~drV~~G~ekks~~~s  404 (644)
T PRK10733        325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMT  404 (644)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             89999999996488777311589884459986703332599999999987087543076689988885115345666689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             66778999999999999985058773234322014555640564002443226899999999999878988888613687
Q gi|254780545|r  401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN  480 (647)
Q Consensus       401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~  480 (647)
                      ++||++|||||||||||+|++++++||+||||+|||+|+|||+++|++|++++||++|+++|+++||||+|||++||.++
T Consensus       405 e~ek~~vAyHEAGHAlva~~l~~~dpv~KVTIiPRG~AlG~t~~~P~ed~~~~tk~~l~~~I~vlLGGRaAEel~fG~~~  484 (644)
T PRK10733        405 EAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEH  484 (644)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf             99999999999989999997689887217996547876773111685100042599999877886341887766607988


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56523355899999999998624888766733404787674345656776787889999999999999999999999999
Q gi|254780545|r  481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSII  560 (647)
Q Consensus       481 ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL  560 (647)
                      +||||+|||++||+||+.||++||||+++||+.|++.+++.|+|+++...++||++|++.||+||++|+++||++|++||
T Consensus       485 vTTGAsnDL~~AT~iAr~MV~~~GMSd~lGpv~~~~~~~~~flGr~~~~~~~~Se~ta~~ID~EV~~ii~eay~~A~~iL  564 (644)
T PRK10733        485 VSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLL  564 (644)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77682788999999999999996888555871224677751346555556775899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9989999999999988854999999999722899998522245665556534
Q gi|254780545|r  561 QEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSEDDGVALCASVPQA  612 (647)
Q Consensus       561 ~~n~~~l~~la~~Lle~EtL~~~ei~~il~~~~~~~~~~~~~~~~~~~~~~~  612 (647)
                      ++|++.|++||++|||+|||+++||++||+++++++|..+............
T Consensus       565 ~~nr~~L~~lA~~LLEkETL~geEi~~Il~~~~~~p~~~~~~~~~~~~~~~~  616 (644)
T PRK10733        565 TDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDN  616 (644)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9979999999999998738589999999669999999898888888889988


No 3  
>CHL00176 ftsH cell division protein; Validated
Probab=100.00  E-value=0  Score=1434.42  Aligned_cols=575  Identities=48%  Similarity=0.794  Sum_probs=538.2

Q ss_pred             CCCEEECHHHHHHHHHHCCEEEEEEECCEEEEEEEC-------CCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCH
Q ss_conf             774021589999999709915999988979999957-------9806999826882799999997798289985686521
Q gi|254780545|r   21 DGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVN-------GESSFQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSP   93 (647)
Q Consensus        21 ~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~-------g~~~~~t~~p~~~~~l~~~L~e~~V~v~~~~~~~~s~   93 (647)
                      ..+++|+||+|++++++|+|++|.+.++..++++..       ....+.+..|..++++++.|.+++|++...+..+. +
T Consensus        41 ~~~~~i~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~-~  119 (631)
T CHL00176         41 QASSRMTYGRFLEYLDMGWVKRVDLYDNGRTAIVEASSPELGNRPQRIRVELPAGASELIQKLKEANVDIDAHPPVQT-S  119 (631)
T ss_pred             CCCCEECHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC-C
T ss_conf             566352499999999739846999964873899983477667763389961688988999999986982887348877-6


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999-99999999999998516--77887776766321000011242256988985288999999999874335
Q gi|254780545|r   94 GLLSYLGSWF-PLVLVVLVWMFLMRQIQ--GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDP  170 (647)
Q Consensus        94 ~~~~iL~~~L-PliLli~i~~fl~rr~~--gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~  170 (647)
                      +|..++.+|+ |+++++++|+|++|.++  +|+++++|+|||||||++.+.+++|||+||+|+|++|+||+|+|+|||+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gks~ak~~~~~~~~vtF~DVaG~~eaK~el~EivdfLk~P  199 (631)
T CHL00176        120 IFITLLSNLLFPLILIGVLWFLFRRSSNKKGGPGQALMNFGKSKARFQMEAKTGITFNDVAGVEEAKEELEEVVTFLKKP  199 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH
T ss_conf             79999999999999999999999986015899878878868676521457899977532288589999999999983595


Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             67664201233311003787425888999974246997020585788644420332459999999987378012063235
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeid  250 (647)
                      ++|+++|+++||||||+|||||||||||||+||||+||||++|||+|+|||||+||+|||+||++||++|||||||||||
T Consensus       200 ~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiD  279 (631)
T CHL00176        200 ERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEID  279 (631)
T ss_pred             HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             88764499689658988989987889999985655884699883785564215558999999999986399699987101


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             64144557898862688988998998530323577829999629810088333165642314100013478899999998
Q gi|254780545|r  251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      |+|++|+.+.+|+||||+|||||||+|||||++++||||||||||||.|||||||||||||+|+|++||.++|++||++|
T Consensus       280 aig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh  359 (631)
T CHL00176        280 AVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVH  359 (631)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             20114789888985089999999999842888788869998258855456866268877549982698989999999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             54887773211024544120379899999999987645532024210456899975013686556766686677899999
Q gi|254780545|r  331 SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYH  410 (647)
Q Consensus       331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyH  410 (647)
                      ++++|+++|+|++.+|+.|+|||||||+|||||||++|+|++++.|+++||++|+|||++|+++ ++.++++||++||||
T Consensus       360 ~k~~~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal~AaR~~~~~it~~d~~~AidrV~~G~ek-~~~~~~~ekr~vAyH  438 (631)
T CHL00176        360 ARNKKLAEDVSLELIARRTPGFSGADLANLLNEAAILAARRRKNQITMSEIDEAIDRVIAGMEG-TPLADSKIKRLIAYH  438 (631)
T ss_pred             HHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHH
T ss_conf             7078666530099998626998678887699999999998477764788999999999716566-677898999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             99999999850587732343220145556405640024432268999999999998789888886136875652335589
Q gi|254780545|r  411 EAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIE  490 (647)
Q Consensus       411 EAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~  490 (647)
                      |||||||+++|++++||+||||+|||+|+|||++.|++|++++||++|+++|+|+|||||||+++||.+++||||+|||+
T Consensus       439 EAGHAlVa~ll~~~dpV~KVTIiPRG~AlG~t~~~P~ed~~l~Tk~eL~~~I~vlLGGRaAEEivfG~~~vTTGAs~DL~  518 (631)
T CHL00176        439 EVGHAIVGTLLPEHDPVQKVTLIPRGNARGLTWFTPNEDQSLISRSQLLARIVGALGGRAAEEVVFGSTEVTTGASNDLQ  518 (631)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             99999999977898760389981278865057776643323342999999999976257765532389887777278999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999986248887667334047876743456567767878899999999999999999999999999989999999
Q gi|254780545|r  491 YATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAI  570 (647)
Q Consensus       491 ~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~l  570 (647)
                      +||+||+.||++|||| ++||+.|....++.|+|+++...++||++|+..||+||++||++||++|++||++|++.|++|
T Consensus       519 ~AT~iAr~MV~~~GMS-~lG~v~~~~~~~~~flG~~~~~~~~~Se~ta~~ID~EV~~il~~ay~~A~~iL~enr~~Le~L  597 (631)
T CHL00176        519 QVTSLARQMVTRFGMS-NIGPLALESQSGENFLGREMRSRSEYSEEIAIRIDKEVRKIVHTCYDYAYQILKDNRVVLDRL  597 (631)
T ss_pred             HHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999985888-666753257777543455555566657999999999999999999999999999969999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf             9999888549999999997228999985
Q gi|254780545|r  571 AEALLEYETLSGKEIASLIRGEKISRPS  598 (647)
Q Consensus       571 a~~Lle~EtL~~~ei~~il~~~~~~~~~  598 (647)
                      |++|||+|||+++||++|+++++..+|.
T Consensus       598 Ae~LLekETL~geEi~~Il~~~~~~ppk  625 (631)
T CHL00176        598 VELLLEKETIDGDEFREIVSEYTILPPK  625 (631)
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCC
T ss_conf             9999984825899999997249999898


No 4  
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=1289.86  Aligned_cols=572  Identities=58%  Similarity=0.913  Sum_probs=539.7

Q ss_pred             CCCCEEECHHHHHHHHHHCCEEEEEEECC--EEEEEEECCCEEEEEEECC--CCHHHHHHHHHCCCEEEEEECCCCCHHH
Q ss_conf             77740215899999997099159999889--7999995798069998268--8279999999779828998568652189
Q gi|254780545|r   20 QDGVQDISYSQFIKDVDAGRVRKISVIGT--HITGFYVNGESSFQTYMPL--VGSKLLDKLQSKDIEISSRPVNDGSPGL   95 (647)
Q Consensus        20 ~~~~~eIsYSeFlk~Le~g~V~sV~I~~~--~i~~~~~~g~~~~~t~~p~--~~~~l~~~L~e~~V~v~~~~~~~~s~~~   95 (647)
                      +.....++|++|+..+..++|+++.+.++  .+..++.++ ..+.++.|.  .++++...+..+++++....+ ...++|
T Consensus        19 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   96 (596)
T COG0465          19 NSSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG-SKNTVYLPKGVNDPNLVSFLDSNNITESGFIP-EDNSLL   96 (596)
T ss_pred             HCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEECCC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CCCCHH
T ss_conf             3246651199999997267851899827732899886488-60578705875547888888752886434678-764079


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999-8516778877767663210000112422569889852889999999998743356766
Q gi|254780545|r   96 LSYLGSWFPLVLVVLVWMFLM-RQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFK  174 (647)
Q Consensus        96 ~~iL~~~LPliLli~i~~fl~-rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~  174 (647)
                      ..++.+++|+++++++|+|++ |++++|+++++|+|||||||.+.+.+++|+|+||+|+|++|+|+.|+|+|||+|+||+
T Consensus        97 ~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~  176 (596)
T COG0465          97 ASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQ  176 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999889999999999999999862577766667775889874135667675664186799999999999863855667


Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf             42012333110037874258889999742469970205857886444203324599999999873780120632356414
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR  254 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~  254 (647)
                      ++|+++|||+||+|||||||||||||+||||+||||++|||+|+|||||+||+|||+||++|+++||||||||||||+|+
T Consensus       177 ~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr  256 (596)
T COG0465         177 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR  256 (596)
T ss_pred             HCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCC
T ss_conf             52353456526855999872789999845468983530344464431478838889999985515996698763433145


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC
Q ss_conf             45578988626889889989985303235778299996298100883331656423141000134788999999985488
Q gi|254780545|r  255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV  334 (647)
Q Consensus       255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~  334 (647)
                      +||.+.|||||||||||||||+|||||..++||+|||||||||.|||||||||||||+|.|++||..+|++||++|++++
T Consensus       257 ~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~  336 (596)
T COG0465         257 QRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK  336 (596)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             45778899806999999888852015788875488526787433317652887766255447851565788878864157


Q ss_pred             CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             77732110245441203798999999999876455320242104568999750136865567666866778999999999
Q gi|254780545|r  335 PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGH  414 (647)
Q Consensus       335 ~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGH  414 (647)
                      +++++||+..+|+.|+|||||||+|++||||++|+|+++..|++.||++|+|||++|+||+++++++.+|+.||||||||
T Consensus       337 ~l~~~V~l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagh  416 (596)
T COG0465         337 PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGH  416 (596)
T ss_pred             CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf             77766788898643778563067655668899998836846753453889999965877688646745403257889999


Q ss_pred             HHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             99998505877323432201455564056400244322689999999999987898888861368756523355899999
Q gi|254780545|r  415 AVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATK  494 (647)
Q Consensus       415 Alva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~  494 (647)
                      |+++++++++||||||||+|||+|||||+++|++|++++|+++++++|+++||||+|||++||. ++||||+|||++||+
T Consensus       417 alv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~  495 (596)
T COG0465         417 ALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATD  495 (596)
T ss_pred             HHHHHHCCCCCCCCEEEECCCCHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCHHHHHHHHH
T ss_conf             9999727887620035522672220110038854532012778887999986671766646244-501352131899999


Q ss_pred             HHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999862488876673340478767434565677678788999999999999999999999999999899999999999
Q gi|254780545|r  495 LARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEAL  574 (647)
Q Consensus       495 iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~la~~L  574 (647)
                      +|+.||++||||+++|++.|+..++ +|+|+.+ ..++||++|++.||.||++++++||+++++||.+|++.++.+++.|
T Consensus       496 ~ar~mVt~~Gms~~lG~v~~~~~~~-~flg~~~-~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~L  573 (596)
T COG0465         496 LARAMVTEYGMSAKLGPVAYEQVEG-VFLGRYQ-KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEML  573 (596)
T ss_pred             HHHHHHHHCCCCHHHCCEEHHHCCC-CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998533518526536512322034-1004665-5567657789999999999889999999999998478999999999


Q ss_pred             HHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             8885499999999972289999
Q gi|254780545|r  575 LEYETLSGKEIASLIRGEKISR  596 (647)
Q Consensus       575 le~EtL~~~ei~~il~~~~~~~  596 (647)
                      +++|||+++++..|++.++.+.
T Consensus       574 le~Eti~~~~i~~i~~~~~~~~  595 (596)
T COG0465         574 LEKETIDAEEIKDILAGRKLPS  595 (596)
T ss_pred             HHHHCCCHHHHHHHHHCCCCCC
T ss_conf             8764168888999982356789


No 5  
>KOG0731 consensus
Probab=100.00  E-value=0  Score=1154.79  Aligned_cols=565  Identities=50%  Similarity=0.778  Sum_probs=499.4

Q ss_pred             CEEECHHHHH-HHHHHCCEEEEEEEC-CEE-EEEEECC--------CEEEEEEECCCCHHHHHHHHHC----CCE-EEEE
Q ss_conf             4021589999-999709915999988-979-9999579--------8069998268827999999977----982-8998
Q gi|254780545|r   23 VQDISYSQFI-KDVDAGRVRKISVIG-THI-TGFYVNG--------ESSFQTYMPLVGSKLLDKLQSK----DIE-ISSR   86 (647)
Q Consensus        23 ~~eIsYSeFl-k~Le~g~V~sV~I~~-~~i-~~~~~~g--------~~~~~t~~p~~~~~l~~~L~e~----~V~-v~~~   86 (647)
                      .++++|++|+ +++++|.|.++++.+ ... ..++..+        ...+..+.+  -+.|.+.+...    ++. +...
T Consensus       163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~--v~~F~~kl~~a~~~l~~~~~~~~  240 (774)
T KOG0731         163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS--VDNFERKLDEAQRNLGIDTVVRV  240 (774)
T ss_pred             CEEEEHHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEEEE--CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             4043199999987604622567863230268999731554665400378888300--43077777888887477743676


Q ss_pred             ECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5686-5218999999999999999999999985167------78877767663210--0001124225698898528899
Q gi|254780545|r   87 PVND-GSPGLLSYLGSWFPLVLVVLVWMFLMRQIQG------GGARGAMGFGKSKA--KLLSGNVGSVTFKDVAGVDEAK  157 (647)
Q Consensus        87 ~~~~-~s~~~~~iL~~~LPliLli~i~~fl~rr~~g------Gg~~~~msfGKSkA--k~~~~~~~~v~f~dv~g~~~~k  157 (647)
                      |... ....+..++..++|.+++++..++++|++++      |++.+++.|+.+++  |+..+.+++|+|+||||+|++|
T Consensus       241 pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK  320 (774)
T KOG0731         241 PVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK  320 (774)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             47997232156676655689999876751453025555668766667632400355032115789887601026708999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999998743356766420123331100378742588899997424699702058578864442033245999999998
Q gi|254780545|r  158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~  237 (647)
                      +||+|+|.|||||++|+++|+++|||+||+|||||||||||||+|||||||||++|||+|+|||||+|++|||+||..||
T Consensus       321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar  400 (774)
T KOG0731         321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR  400 (774)
T ss_pred             HHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999843989998747767675178789998678999988530589646413378888760343488899998743


Q ss_pred             HHCCHHEEHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf             7378012063235641445-578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHR-GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP  316 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r-~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~  316 (647)
                      ++||||||||||||+|++| |.+.+++|+||||||||||+|||||.++.+|||+|||||||.||+||+|||||||+|+|+
T Consensus       401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~  480 (774)
T KOG0731         401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID  480 (774)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf             26980797145420031255666678880788899988787527767784799811688664288764987555523246


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             134788999999985488777-3211024544120379899999999987645532024210456899975013686556
Q gi|254780545|r  317 NPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERR  395 (647)
Q Consensus       317 ~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~  395 (647)
                      +||..+|.+||++|+++++++ +++|+..+|..|+|||||||+|||||||+.|+|++...|+..||++|++|+++|.+++
T Consensus       481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~  560 (774)
T KOG0731         481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK  560 (774)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             98514168999998621577631567999986089996789986424999999873367301564999999986122345


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76668667789999999999999850587732343220145556405640024432268999999999998789888886
Q gi|254780545|r  396 STAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFT  475 (647)
Q Consensus       396 ~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~  475 (647)
                      ++.++.+|++.+||||||||+++|+|+++||+.||||+| |+++||++|.|.++ +++|+.+|+++||++||||||||++
T Consensus       561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~  638 (774)
T KOG0731         561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV  638 (774)
T ss_pred             CHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEECC-CCCCCEEEECCCCC-CCCCHHHHHHHHHHHHCCCHHHHEE
T ss_conf             011077765342212125232201345667401687336-77465378777645-3233899998899885762033203


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13687565233558999999999986248887667334047876743456567767878899999999999999999999
Q gi|254780545|r  476 FGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQK  555 (647)
Q Consensus       476 fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~  555 (647)
                      || +++||||++||++||++||.||++||||+++|++++..     ....++...++||+.+++.||.||++|++.||++
T Consensus       639 fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~-----~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~  712 (774)
T KOG0731         639 FG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQM-----LLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYER  712 (774)
T ss_pred             CC-CCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEECCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27-75671110408899999999998717544457312257-----6665542237531457888889999987647788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             999999989999999999988854999999999722899998
Q gi|254780545|r  556 AKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRP  597 (647)
Q Consensus       556 a~~iL~~n~~~l~~la~~Lle~EtL~~~ei~~il~~~~~~~~  597 (647)
                      |.++|+.|++.++.|++.||++|+|+++|+.+++...+...+
T Consensus       713 ~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~  754 (774)
T KOG0731         713 TKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP  754 (774)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf             999998619999999999876620446889998635888632


No 6  
>KOG0734 consensus
Probab=100.00  E-value=0  Score=1136.39  Aligned_cols=476  Identities=55%  Similarity=0.851  Sum_probs=440.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999985167788777676632-1000011242256988985288999999999874335676642012
Q gi|254780545|r  101 SWFPLVLVVLVWMFLMRQIQGGGARGAMGFGKS-KAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGR  179 (647)
Q Consensus       101 ~~LPliLli~i~~fl~rr~~gGg~~~~msfGKS-kAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~  179 (647)
                      .++.++++.|++.++.....+    +.|.-+-. ..+...+...+|||+||-|+||+|+||+|||+|||+|+||+++|++
T Consensus       260 ~i~~~~~~~G~~~~~~~~~l~----~i~~~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK  335 (752)
T KOG0734         260 TIVGYLLLLGIYALLENTGLS----GIFRSTTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK  335 (752)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             999999998888986454544----3000133654446846641655002147278999999999986090876431475


Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCC
Q ss_conf             33311003787425888999974246997020585788644420332459999999987378012063235641445578
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG  259 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~  259 (647)
                      .||||||.|||||||||||||+||||+||||+.+||+|-|||||+||+|||+||+.||+.||||||||||||+|.+|...
T Consensus       336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~  415 (752)
T KOG0734         336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS  415 (752)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCC
T ss_conf             88853876899975569999860556897474166204454220148999999999873498599972002205667862


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             98862688988998998530323577829999629810088333165642314100013478899999998548877732
Q gi|254780545|r  260 LGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPN  339 (647)
Q Consensus       260 ~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~  339 (647)
                      ..  | ...|||||||+|||||..|+|||||||||+||.||+||+||||||++|.|++||..||.+||+.|++++++++|
T Consensus       416 ~~--~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~  492 (752)
T KOG0734         416 DQ--H-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDED  492 (752)
T ss_pred             HH--H-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             77--8-99989999999842867688669995168745556873488755336746897733289999999834876567


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             11024544120379899999999987645532024210456899975013686556766686677899999999999998
Q gi|254780545|r  340 VILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVAC  419 (647)
Q Consensus       340 ~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~  419 (647)
                      ||+..||+-|+|||||||+|+||.||+.|+.++...|+|.||+.|.|||+||+|||++.++++-|+++||||+|||+||+
T Consensus       493 VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~  572 (752)
T KOG0734         493 VDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVAL  572 (752)
T ss_pred             CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             78767226889876578998888999999863740110887765443321152113344681454434433267258875


Q ss_pred             HCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             50587732343220145556405640024432268999999999998789888886136875652335589999999999
Q gi|254780545|r  420 HVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVM  499 (647)
Q Consensus       420 ~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~m  499 (647)
                      +++++.|+||+||+|||.+||.|.++|+.|++..||.+|++++.|+||||+|||++||.++|||||++||++||++|++|
T Consensus       573 yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~M  652 (752)
T KOG0734         573 YTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRM  652 (752)
T ss_pred             ECCCCCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             12788664302532577666631346865404577999999877762305778886067755566530278899999999


Q ss_pred             HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86248887667334047876743456567767878899999999999999999999999999989999999999988854
Q gi|254780545|r  500 VTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYET  579 (647)
Q Consensus       500 V~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~la~~Lle~Et  579 (647)
                      |++||||+++||+++....+          ..+++.+|...||.||+++|.++|+||+.||+.|...++.||++||++||
T Consensus       653 Vt~fGMSd~vG~v~~~~~~~----------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYET  722 (752)
T KOG0734         653 VTKFGMSDKVGPVTLSAEDN----------SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYET  722 (752)
T ss_pred             HHHCCCCCCCCCEEEECCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99708655436434223578----------88878005888999999999999999999999878999999999877524


Q ss_pred             CCHHHHHHHHHCCC
Q ss_conf             99999999972289
Q gi|254780545|r  580 LSGKEIASLIRGEK  593 (647)
Q Consensus       580 L~~~ei~~il~~~~  593 (647)
                      |+++||+.+++|..
T Consensus       723 L~A~eik~vl~g~~  736 (752)
T KOG0734         723 LDAKEIKRVLKGKS  736 (752)
T ss_pred             CCHHHHHHHHHCCC
T ss_conf             78999999972563


No 7  
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=634.63  Aligned_cols=257  Identities=46%  Similarity=0.773  Sum_probs=248.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf             01124225698898528899999999987-43356766420123331100378742588899997424699702058578
Q gi|254780545|r  138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSD  216 (647)
Q Consensus       138 ~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~  216 (647)
                      -..++|++||+||+|+++..+|++|+|+. |++|+.|.++|+.|||||||||||||||||||||+|+++++.|+.+.||+
T Consensus       141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE  220 (406)
T COG1222         141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE  220 (406)
T ss_pred             EECCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHH
T ss_conf             11258987865335889999999998403366888999749999971276689997588999998720586699942199


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             86444203324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      ||.+|+|+|++-||++|+.||.+||||||||||||||.+|.....||..|-.+|+-|||.|||||+...+|=||+|||||
T Consensus       221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~  300 (406)
T COG1222         221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP  300 (406)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf             99998341169999999987414984999831122311113688885099999999999860588978876899855885


Q ss_pred             CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             00883331656423141000134788999999985488777321102454412037989999999998764553202421
Q gi|254780545|r  297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLV  376 (647)
Q Consensus       297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i  376 (647)
                      |.|||||||||||||+|+||+||.++|.+||++|++++.++++||++.||+.|.|||||||.++|.||.++|+|+++..|
T Consensus       301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V  380 (406)
T COG1222         301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEV  380 (406)
T ss_pred             CCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             55576650887545301168989789999999876214676676999998753899567799999987599998604733


Q ss_pred             CHHHHHHHHHHCCCCCCC
Q ss_conf             045689997501368655
Q gi|254780545|r  377 TMQEFEDAKDKILMGAER  394 (647)
Q Consensus       377 ~~~dl~~A~~rv~~G~ek  394 (647)
                      +++||.+|++||+.+..+
T Consensus       381 t~~DF~~Av~KV~~~~~~  398 (406)
T COG1222         381 TMEDFLKAVEKVVKKKKK  398 (406)
T ss_pred             CHHHHHHHHHHHHHCCCC
T ss_conf             399999999999721454


No 8  
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00  E-value=0  Score=629.30  Aligned_cols=259  Identities=47%  Similarity=0.757  Sum_probs=247.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      ..++|+|+|+||+|++++|++++|+|.+ |++|+.|.++|++|||||||||||||||||||||+|+|+++|||.+++|++
T Consensus       123 v~e~P~v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l  202 (390)
T PRK03992        123 VIESPDVTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL  202 (390)
T ss_pred             CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf             14799998466149899999999999998659899997699999727868989997899999999874888799667997


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD  297 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~  297 (647)
                      +++|+|+|+++||++|+.||+++||||||||||++|++|..+..+++.+-.++++|||+|||||+...+|+|||||||||
T Consensus       203 ~sk~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd  282 (390)
T PRK03992        203 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPD  282 (390)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
T ss_conf             52454179999999999999709908971432566335677888620889999999999744877778827996069810


Q ss_pred             CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             08833316564231410001347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r  298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
                      .|||||+||||||++|+|++||.++|.+||++|++++++++++|++.+|+.|+|||||||+++|+||++.|+|+++..|+
T Consensus       283 ~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~  362 (390)
T PRK03992        283 ILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVT  362 (390)
T ss_pred             HCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             05977754776523887089499999999999847999998889999997687998999999999999999985898608


Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             45689997501368655676
Q gi|254780545|r  378 MQEFEDAKDKILMGAERRST  397 (647)
Q Consensus       378 ~~dl~~A~~rv~~G~ek~~~  397 (647)
                      ++||++|+.+|+.+.+++..
T Consensus       363 ~~Df~~Ai~kv~~~~~~~~~  382 (390)
T PRK03992        363 MEDFLKAIEKVMGKEEKEEY  382 (390)
T ss_pred             HHHHHHHHHHHHCCCCCCHH
T ss_conf             99999999999678650110


No 9  
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=627.37  Aligned_cols=253  Identities=47%  Similarity=0.775  Sum_probs=246.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r  137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
                      +-..++|+|+|+||+|+++--+|++|.|.. ||+|+.|.++|+.|||||||||||||||||||||+|+|....|+.+-||
T Consensus       111 ~EV~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgS  190 (364)
T TIGR01242       111 MEVEERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS  190 (364)
T ss_pred             EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHH
T ss_conf             77621782334026787899999988873468883167762889898657007579768899998631455126886044


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      +||.+|+|+||+-||++|+.||+.|||||||||||||+.+|-....+|.-|-.+||-|||.|||||+...+|-|||||||
T Consensus       191 ElV~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR  270 (364)
T TIGR01242       191 ELVRKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR  270 (364)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             44444413316899999998530698168610133354321146778731578899999975248887676168872076


Q ss_pred             CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r  296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL  375 (647)
Q Consensus       296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~  375 (647)
                      +|+||||+||||||||.|+||+|+.+||.+||++|++++++++|||++.||+.|.|+|||||..+|.||.++|+|+.+..
T Consensus       271 ~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~  350 (364)
T TIGR01242       271 PDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDY  350 (364)
T ss_pred             CHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             20204321488861325731697832205665552100001235687999987478866304234346204777744567


Q ss_pred             CCHHHHHHHHHHCC
Q ss_conf             10456899975013
Q gi|254780545|r  376 VTMQEFEDAKDKIL  389 (647)
Q Consensus       376 i~~~dl~~A~~rv~  389 (647)
                      |||.||..|++||+
T Consensus       351 vT~~Df~kAv~Kv~  364 (364)
T TIGR01242       351 VTMDDFLKAVEKVL  364 (364)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             66999999987319


No 10 
>KOG0730 consensus
Probab=100.00  E-value=0  Score=592.35  Aligned_cols=247  Identities=43%  Similarity=0.758  Sum_probs=235.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      .-+.++|+|+||+|++++|.+|++.|.| +++|++|.++|..||||||||||||||||++|||+|+||+++|++++|+++
T Consensus       425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL  504 (693)
T KOG0730         425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL  504 (693)
T ss_pred             ECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHH
T ss_conf             02478878220457899999999998616656599987257887547777899862478999986463587264157899


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD  297 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~  297 (647)
                      .+||||++++.||++|++||+.+|||||+||||+++..|+++.+   .-.+++|||||+||||++..++|+|||||||||
T Consensus       505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd  581 (693)
T KOG0730         505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD  581 (693)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf             87751825899999999986269837744666666630478755---148999999998700410147089995058810


Q ss_pred             CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CCC
Q ss_conf             088333165642314100013478899999998548877732110245441203798999999999876455320--242
Q gi|254780545|r  298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN--RRL  375 (647)
Q Consensus       298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~--~~~  375 (647)
                      .||+||+||||||+.|||++||.++|.+||+.|++++|++++||++.||..|.|||||||.+||+||++.|+|++  ...
T Consensus       582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~  661 (693)
T KOG0730         582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE  661 (693)
T ss_pred             HCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             12697759865330575158347889999999973399986556999999854677389999999999999987526543


Q ss_pred             CCHHHHHHHHHHC
Q ss_conf             1045689997501
Q gi|254780545|r  376 VTMQEFEDAKDKI  388 (647)
Q Consensus       376 i~~~dl~~A~~rv  388 (647)
                      |++.||++|+..+
T Consensus       662 i~~~hf~~al~~~  674 (693)
T KOG0730         662 ITWQHFEEALKAV  674 (693)
T ss_pred             CCHHHHHHHHHHC
T ss_conf             4489999999850


No 11 
>KOG0733 consensus
Probab=100.00  E-value=0  Score=564.07  Aligned_cols=230  Identities=44%  Similarity=0.721  Sum_probs=217.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      ....+++.|+|++|+|..-.+|++++.++++|+-|..+|.+||||+|||||||||||+||+|+|||++||||++++++++
T Consensus       181 ~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv  260 (802)
T KOG0733         181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV  260 (802)
T ss_pred             CCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             78988863654167389999999999885281168662877997516448998647899999752128854851414653


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCEEEEEECC
Q ss_conf             444203324599999999873780120632356414455789886268898899899853032357----7829999629
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS----EGVILIAATN  294 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~----~~v~vi~aTn  294 (647)
                      +-+-|+++.+||+||++|+.+||||+||||||||+++|...   +.+...+++.|||++||++...    .+|+||||||
T Consensus       261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a---qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn  337 (802)
T KOG0733         261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA---QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN  337 (802)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf             15575228999999998736697599851100136440457---889999999999985100256666899769982478


Q ss_pred             CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81008833316564231410001347889999999854887773211024544120379899999999987645532
Q gi|254780545|r  295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
                      |||.|||||.|+|||||.|.++.||..+|.+||++.++++.++.++|+++||+.||||.||||..||.+||..|+++
T Consensus       338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR  414 (802)
T KOG0733         338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR  414 (802)
T ss_pred             CCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             97655877732565532353068966889999999986277787768999975188752141999999999999999


No 12 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00  E-value=0  Score=528.37  Aligned_cols=234  Identities=46%  Similarity=0.792  Sum_probs=223.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      --+-|+|+|+||+|++++|++|+|.|+| ||.|+-|.++|++||||+||||||||||||||||+|.|.+.+|+++.|+++
T Consensus       532 ~~evP~v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~  611 (980)
T TIGR01243       532 LVEVPNVKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI  611 (980)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf             02337511001466789999998775234440589986078899734874689861688888774014564677407312


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD  297 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~  297 (647)
                      +++|||++++++|++|++||+.||||||+|||||+++.||...... .-.++++||||+||||+....+|+|||||||||
T Consensus       612 lskWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPd  690 (980)
T TIGR01243       612 LSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPD  690 (980)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             2344032479999999986412873787302111054124421001-026899999998640443436658986158874


Q ss_pred             CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0883331656423141000134788999999985488777321102454412037989999999998764553202
Q gi|254780545|r  298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR  373 (647)
Q Consensus       298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~  373 (647)
                      +|||||||||||||.|+||.||.++|.+||++|++.+++++|+|++.||+.|+||+||||+.+|+||++.++|+.-
T Consensus       691 i~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~  766 (980)
T TIGR01243       691 ILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV  766 (980)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             2361004887412168605985567676765531113530134389998651687632299999999999999973


No 13 
>KOG0736 consensus
Probab=100.00  E-value=0  Score=514.72  Aligned_cols=258  Identities=38%  Similarity=0.689  Sum_probs=232.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      .|..|+|+|+||+|++++|.++.+.++. ||+|+.|.. |.+.-.||||||||||||||+|||+|.||...|+++.|+|+
T Consensus       663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL  741 (953)
T KOG0736         663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL  741 (953)
T ss_pred             CCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHH
T ss_conf             98889646001557899999999875475437566512-54313505887799985579999987543036785058899


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323--5778299996298
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE--SSEGVILIAATNR  295 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~--~~~~v~vi~aTn~  295 (647)
                      +.||||+++.+||++|++||..+|||||+||||+++++||...-+|+ .-++++.|||.||||++  ++++|+|||||||
T Consensus       742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNR  820 (953)
T KOG0736         742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNR  820 (953)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf             88774301888999999854469749983121232756788788654-08999999999862666788886599825888


Q ss_pred             CCCCCHHHCCCCCCCCEEEECHHHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1008833316564231410001347-889999999854887773211024544120-37989999999998764553202
Q gi|254780545|r  296 PDVLDAALLRPGRFDRQITVPNPDI-VGREHILMVHSRNVPLAPNVILKTIARGTP-GFSGADLRNLVNEAALMAARRNR  373 (647)
Q Consensus       296 ~~~lD~al~RpgRfd~~i~~~~P~~-~~r~~i~~~~~~~~~~~~~~d~~~la~~t~-g~sgAdi~~~~~eAa~~a~r~~~  373 (647)
                      ||.||||||||||||+.+||+.++- +.+..||+-.+++.++++|||+..+|+.++ .|||||+-.||..|.+.|+++.-
T Consensus       821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i  900 (953)
T KOG0736         821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI  900 (953)
T ss_pred             CCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             55457655388765524885588567889999999887702878767999996389677524799998899999999997


Q ss_pred             -----------------CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             -----------------42104568999750136865567666866778
Q gi|254780545|r  374 -----------------RLVTMQEFEDAKDKILMGAERRSTAMTEEEKK  405 (647)
Q Consensus       374 -----------------~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~  405 (647)
                                       -.|+++||.+|.+|.       ...+++.|.+
T Consensus       901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l-------~PSvS~~EL~  942 (953)
T KOG0736         901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRL-------QPSVSEQELL  942 (953)
T ss_pred             HHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHC-------CCCCCHHHHH
T ss_conf             77650553300148851788789999999860-------9752199999


No 14 
>KOG0733 consensus
Probab=100.00  E-value=0  Score=511.30  Aligned_cols=256  Identities=42%  Similarity=0.711  Sum_probs=234.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             12422569889852889999999-99874335676642012333110037874258889999742469970205857886
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      ...|+|+|+||+|+++++.+|+. |+...|+|+.|+++|..+|.||||+|||||||||||||+|+|+|.+|+++.|++++
T Consensus       503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl  582 (802)
T KOG0733         503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL  582 (802)
T ss_pred             EECCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             32699876641249999999999986002388899982888987238757998618899999850304754762388999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .||||+++..||.+|.+||.++|||||||||||+.++|+.+..+   -..+++|||||||||.+.+.||+|||||||||+
T Consensus       583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi  659 (802)
T KOG0733         583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVIAATNRPDI  659 (802)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCH---HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             87742378999999998623898389851112027655777750---589999999987316211142599950689765


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             8833316564231410001347889999999854--887773211024544120--37989999999998764553202-
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTP--GFSGADLRNLVNEAALMAARRNR-  373 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~--g~sgAdi~~~~~eAa~~a~r~~~-  373 (647)
                      +|||+|||||||+..||++|+..+|.+||+.+++  +.|+++|||++.||+.+.  |||||||+.||+||++.|.|+.- 
T Consensus       660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~  739 (802)
T KOG0733         660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF  739 (802)
T ss_pred             CCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55655187755742450699878899999998535799887545899985123226875365999999999999999986


Q ss_pred             ---------------CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             ---------------42104568999750136865567666866778
Q gi|254780545|r  374 ---------------RLVTMQEFEDAKDKILMGAERRSTAMTEEEKK  405 (647)
Q Consensus       374 ---------------~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~  405 (647)
                                     -.+++.||++|+.+|.       ...++.+++
T Consensus       740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~-------pSv~~~dr~  779 (802)
T KOG0733         740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR-------PSVSERDRK  779 (802)
T ss_pred             HCCCCCCCCCEEEEEEEECHHHHHHHHHHCC-------CCCCHHHHH
T ss_conf             1112576630232002430899999998638-------885378899


No 15 
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00  E-value=0  Score=482.83  Aligned_cols=240  Identities=30%  Similarity=0.435  Sum_probs=210.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             2422569889852889999999-998743356766420123331100378742588899997424699702058578864
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      ..++.+|+||+|++..|+.|.. -..|....   ..+|.++||||||+|||||||||+|||+|+|+++||+.++++++++
T Consensus       221 ~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a---~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~  297 (491)
T CHL00195        221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQA---ENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG  297 (491)
T ss_pred             EECCCCCHHCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf             7489980414688999999999889862336---6459999987999799998789999999866389469966799756


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                      +|||++++++|++|+.|++.+||||||||||+....|++...+  ....++++|||++|+  +...+|+||||||+|+.|
T Consensus       298 ~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~~d~--g~s~rv~~~~Lt~m~--e~~~~VfViattN~~~~L  373 (491)
T CHL00195        298 GIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDSKGDS--GTSNRVLATFITWLS--EKKSPVFVVATANNIDSL  373 (491)
T ss_pred             HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCC
T ss_conf             0067049999999999986198589974654542588888887--232899999999864--689976999958997558


Q ss_pred             CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             83331656423141000134788999999985488-777-3211024544120379899999999987645532024210
Q gi|254780545|r  300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
                      ||||+||||||++|+|++||.++|++||++|+++. +.. .++|++.||+.|+|||||||+++|++|+..|..++ +.++
T Consensus       374 ~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~-r~~~  452 (491)
T CHL00195        374 PLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEK-REFT  452 (491)
T ss_pred             CHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf             987708987770476489598999999999985447887554699999976859888999999999999998758-8665


Q ss_pred             HHHHHHHHHHC
Q ss_conf             45689997501
Q gi|254780545|r  378 MQEFEDAKDKI  388 (647)
Q Consensus       378 ~~dl~~A~~rv  388 (647)
                      .+||..|+..+
T Consensus       453 ~~dl~~a~~~~  463 (491)
T CHL00195        453 TEDICLALKQL  463 (491)
T ss_pred             HHHHHHHHHHC
T ss_conf             89999999817


No 16 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00  E-value=0  Score=483.30  Aligned_cols=372  Identities=37%  Similarity=0.575  Sum_probs=286.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             24225698898528899999999987-43356766420123331100378742588899997424699702058578864
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      .-|+|||.||+|+++.++.++|+|+. |++|+.|.++|+.||||+||||||||||||||||+|+|++..|+++.|+++++
T Consensus       199 ~~P~vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeims  278 (980)
T TIGR01243       199 KVPEVTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMS  278 (980)
T ss_pred             CCCCCCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             17742033203358999999998843575647898618899873587558986178999998753055178850603443


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                      +|+|+++.++|++|+.|.++||+|||||||||++++|..-.|  .-| .+++.|||+.|||+..+..|+||||||||+.|
T Consensus       279 ky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~G--eve-~r~v~qlltlmdGlk~rG~v~viGatnrP~a~  355 (980)
T TIGR01243       279 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVE-KRVVAQLLTLMDGLKGRGKVIVIGATNRPDAL  355 (980)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             313630789999998653058707874121100764100001--688-99999999997400248728998146885002


Q ss_pred             CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
Q ss_conf             833316564231410001347889999999854887773211--------------------------------------
Q gi|254780545|r  300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVI--------------------------------------  341 (647)
Q Consensus       300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d--------------------------------------  341 (647)
                      ||||.|||||||.|.|+.||.++|.+||++|++++|+.+|+|                                      
T Consensus       356 dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (980)
T TIGR01243       356 DPALRRPGRFDREIEIGVPDKEGRKEILQIHTRNMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEI  435 (980)
T ss_pred             CHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             62242788644335741885456788887641478750110057899999876665566788999999988631026789


Q ss_pred             ----------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------------------CCCCCHHH
Q ss_conf             ----------------------0245441203798999999999876455320-------------------24210456
Q gi|254780545|r  342 ----------------------LKTIARGTPGFSGADLRNLVNEAALMAARRN-------------------RRLVTMQE  380 (647)
Q Consensus       342 ----------------------~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~-------------------~~~i~~~d  380 (647)
                                            ++.||..|+||+||||+.+|+|||+.+.|+-                   .-.+|+.|
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG~~Gadlaal~~eaam~~lrr~~~eg~i~~ea~~iP~~vl~~lkvt~~d  515 (980)
T TIGR01243       436 KEILKEDGNVYVEVRNRLIDKLLDKLAEVTHGFVGADLAALAKEAAMAALRRLIREGKINLEAEEIPKEVLEELKVTMKD  515 (980)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99975012124678999999999988654236203559999899999999987402774502677579999873222899


Q ss_pred             HHHHHHHCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHH-H
Q ss_conf             899975013686556766---------686677899999999999998505877323432201455564056400244-3
Q gi|254780545|r  381 FEDAKDKILMGAERRSTA---------MTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEAD-R  450 (647)
Q Consensus       381 l~~A~~rv~~G~ek~~~~---------~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d-~  450 (647)
                      |.+|+..|.-..=|.-.+         +.--|--.-+..||    |-|-|+......|+-|-|-   -|+.+|-|... +
T Consensus       516 f~ealk~~~P~~~re~~~evP~v~W~diGGlee~kq~lrea----veWPlk~~~~f~k~G~~PP---~Gvll~GPPGtGk  588 (980)
T TIGR01243       516 FKEALKMVEPSALREVLVEVPNVKWEDIGGLEEVKQELREA----VEWPLKAPEVFEKLGIRPP---KGVLLFGPPGTGK  588 (980)
T ss_pred             HHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHHHCCCCCC---CCEEEECCCCCCH
T ss_conf             99998510623411000233751100146678999999877----5234440589986078899---7348746898616


Q ss_pred             HC-----------------------CCHHHHHHHH--HHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHH-HHHHHH
Q ss_conf             22-----------------------6899999999--99987898888861368756-----52335589999-999999
Q gi|254780545|r  451 HS-----------------------TTYVWMTSRL--TILMGGRVAEEFTFGEDNVT-----SGAMSDIEYAT-KLARVM  499 (647)
Q Consensus       451 ~~-----------------------~tk~~l~~~i--~v~LgGRaAEei~fG~~~it-----tGAs~DL~~AT-~iA~~m  499 (647)
                      .+                       .+-.+-+..|  ..--+-.+|--++|= +++.     -|...+-...| ++..+|
T Consensus       589 tllakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~aP~~~f~-deidaiaP~rG~~~~~~~vtd~~~nql  667 (980)
T TIGR01243       589 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFF-DEIDAIAPARGASLDEKGVTDRIVNQL  667 (980)
T ss_pred             HHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             8888877401456467740731223440324799999999864128737873-021110541244210010268999999


Q ss_pred             HHHC-CCCCCCCCEEECCCCCCCCC
Q ss_conf             8624-88876673340478767434
Q gi|254780545|r  500 VTQF-GFSNLLGKVSYEEGQQEALL  523 (647)
Q Consensus       500 V~~~-GMs~~lG~i~~~~~~~~~~l  523 (647)
                      .++. ||.+.-+.+.....+....+
T Consensus       668 l~e~dG~~~~~~vvvi~atnrPdi~  692 (980)
T TIGR01243       668 LTELDGLEELSDVVVIAATNRPDIL  692 (980)
T ss_pred             HHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             9864044343665898615887423


No 17 
>KOG0729 consensus
Probab=100.00  E-value=0  Score=481.39  Aligned_cols=260  Identities=41%  Similarity=0.729  Sum_probs=248.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r  137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
                      +..+++|+||+.||+|+.+..+.++|+|+. |-+|++|.++|+-|||||||||||||||||+|+|+|+..+.-|+.+-||
T Consensus       166 M~VEekPDvTY~DvGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGS  245 (435)
T KOG0729         166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS  245 (435)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHH
T ss_conf             87512798630345366999999999884325588888752789987337868999861089998745667458763118


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      +++.+|||+||..||+||+.||....||||+|||||+|..|=....||..|-.+|+-+|+.++|||+.+.++-|+.||||
T Consensus       246 ELVQKYvGEGARMVRElFeMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNR  325 (435)
T KOG0729         246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR  325 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf             99999862468999999998523652799841010226720357888727999999999986037788887589863489


Q ss_pred             CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r  296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL  375 (647)
Q Consensus       296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~  375 (647)
                      ||.|||||+||||+||++++++||.++|..||++|.+.+....|+-++.||+.|+.-+||+|.++|.||.+.|+|..++.
T Consensus       326 PdtLDpALlRPGRlDRKVEF~LPDlegR~~I~kIHaksMsverdIR~eLlarLCpnsTGAeiRSVCtEAGMfAIraRRkv  405 (435)
T KOG0729         326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV  405 (435)
T ss_pred             CCCCCHHHCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88768766287642311210587623551257774111442322169999865889742578888877437888877622


Q ss_pred             CCHHHHHHHHHHCCCCCCCCC
Q ss_conf             104568999750136865567
Q gi|254780545|r  376 VTMQEFEDAKDKILMGAERRS  396 (647)
Q Consensus       376 i~~~dl~~A~~rv~~G~ek~~  396 (647)
                      .|..||.+|+++|+-|-.|-|
T Consensus       406 aTEKDFL~Av~KVvkgy~KFS  426 (435)
T KOG0729         406 ATEKDFLDAVNKVVKGYAKFS  426 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             008889999999987777416


No 18 
>KOG0738 consensus
Probab=100.00  E-value=0  Score=468.52  Aligned_cols=260  Identities=39%  Similarity=0.583  Sum_probs=230.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             112422569889852889999999-9987433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      ....++++|+||+|+.+||+-|+| +|-.+.-|+-|+- +-+|.|||||+|||||||||||||||.||+..||.||.|.+
T Consensus       203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl  281 (491)
T KOG0738         203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL  281 (491)
T ss_pred             HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf             60599867676316499999999887544424888742-44653000556799974789999998861672787402456


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCC---EEEEEEC
Q ss_conf             644420332459999999987378012063235641445578988626889889989985303235-778---2999962
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES-SEG---VILIAAT  293 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~-~~~---v~vi~aT  293 (647)
                      +++|-|++++-||-||+.||..||++|||||||+|+.+||..  +-|.-..++-++||++|||... .++   |+|+|||
T Consensus       282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT  359 (491)
T KOG0738         282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT  359 (491)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf             555325269999999999987488535335677887257986--503678888889999863344444565169998436


Q ss_pred             CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98100883331656423141000134788999999985488777321102454412037989999999998764553202
Q gi|254780545|r  294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR  373 (647)
Q Consensus       294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~  373 (647)
                      |.|+.||.||+|  ||+++|+|+|||.++|.+.|++.++..+++++++++.||..+.|||||||.|+|++|++++.|+.-
T Consensus       360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i  437 (491)
T KOG0738         360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI  437 (491)
T ss_pred             CCCCCHHHHHHH--HHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             898205799999--876303312878789999999762356688875699999985688737799999999999999997


Q ss_pred             -----------------CCCCHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHH
Q ss_conf             -----------------4210456899975013686556766---6866778999
Q gi|254780545|r  374 -----------------RLVTMQEFEDAKDKILMGAERRSTA---MTEEEKKITA  408 (647)
Q Consensus       374 -----------------~~i~~~dl~~A~~rv~~G~ek~~~~---~~~~ek~~vA  408 (647)
                                       ..|++.||++|+.+|     +++..   +..+|||+.-
T Consensus       438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v-----~pSvs~~d~~k~ekW~~e  487 (491)
T KOG0738         438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKV-----RPSVSAADLEKYEKWMDE  487 (491)
T ss_pred             HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHH
T ss_conf             24791776443231434565156599999970-----867788899999999987


No 19 
>KOG0726 consensus
Probab=100.00  E-value=0  Score=476.66  Aligned_cols=253  Identities=39%  Similarity=0.699  Sum_probs=243.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      +..|.-||+||+|++.-.+|++|.|+. |.+|+.|..||++|||||+|||+|||||||||||+|+.....|+-+.||+++
T Consensus       177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi  256 (440)
T KOG0726         177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI  256 (440)
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             34850111344257899999998633888987899972889997058867999753688887724552124556508999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .+|.|.|++-||++|+.|..+||||+|||||||||.+|-....||..|-.+|+-+||-++|||+++..|-||.|||+.+.
T Consensus       257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~  336 (440)
T KOG0726         257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET  336 (440)
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf             98736551999999988875298269864001104521347885078999999999874268665677589974165344


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM  378 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~  378 (647)
                      |||||+||||.||+|++++||.+.++.||.+|+.++.+++||+++.+...-..+|||||..+|.||.++|.|+.|..+++
T Consensus       337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~  416 (440)
T KOG0726         337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTM  416 (440)
T ss_pred             CCHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             67755278754311125797556323156875024300124669997520133563108889877768999998762153


Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             56899975013686
Q gi|254780545|r  379 QEFEDAKDKILMGA  392 (647)
Q Consensus       379 ~dl~~A~~rv~~G~  392 (647)
                      +||..|.++|++-.
T Consensus       417 ~DF~ka~e~V~~~K  430 (440)
T KOG0726         417 EDFKKAKEKVLYKK  430 (440)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             87999999987740


No 20 
>KOG0727 consensus
Probab=100.00  E-value=0  Score=470.08  Aligned_cols=250  Identities=40%  Similarity=0.684  Sum_probs=240.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      .++|+|++.||+|+|--|+|++|.|+. |.+.+.|...|+-||+||||||||||||||||||+|+.....|+.+.||+|+
T Consensus       147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv  226 (408)
T KOG0727         147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV  226 (408)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHH
T ss_conf             77898641345662112899998883653078899970889986227757999757899999861261114463018999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .+|.|+|+..||++|..||++||+||||||||||+.+|=....|...|-.++|-+||.+||||+.+.+|-||.||||.|.
T Consensus       227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt  306 (408)
T KOG0727         227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT  306 (408)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf             99855483899999998761698379862245676641244446318999999999975147676665589983275556


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM  378 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~  378 (647)
                      ||||||||||+||+|++++||...++-+|...+.++.+++++|++.+..+-.-.|||||..+|.||.++|+|.++-.|..
T Consensus       307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~  386 (408)
T KOG0727         307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ  386 (408)
T ss_pred             CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEH
T ss_conf             68766287643444357798546652227754310267854488987418543434669999999768998762546527


Q ss_pred             HHHHHHHHHCC
Q ss_conf             56899975013
Q gi|254780545|r  379 QEFEDAKDKIL  389 (647)
Q Consensus       379 ~dl~~A~~rv~  389 (647)
                      .||++|+.+++
T Consensus       387 kd~e~ay~~~v  397 (408)
T KOG0727         387 KDFEKAYKTVV  397 (408)
T ss_pred             HHHHHHHHHHC
T ss_conf             77999998650


No 21 
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=467.24  Aligned_cols=246  Identities=50%  Similarity=0.797  Sum_probs=231.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      ...+.++|+|++|++++|+++++.|.+ ++.|+.|.+.|.++|+|+||||||||||||||||+|.+++.+|+++.+++++
T Consensus       234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~  313 (494)
T COG0464         234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL  313 (494)
T ss_pred             ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             03688514532363779999999999999708876325898883699988999758999999875449824884335554


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      ++|+|+.+++||++|..|++.+||||||||||+++..|+.+..++.   ++++||||++|||.+..++|+||||||+|+.
T Consensus       314 sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~---~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~  390 (494)
T COG0464         314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDD  390 (494)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHH---HHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             0776599999999999999669988974886667412899876379---9999999999747544376489964798332


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf             883331656423141000134788999999985488--77732110245441203798999999999876455320-242
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV--PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN-RRL  375 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~-~~~  375 (647)
                      +|||++||||||+.|+|++||..+|.+||++|+++.  ++..++|+..+|+.|.|||||||+++|.||++.+.++. ...
T Consensus       391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~  470 (494)
T COG0464         391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE  470 (494)
T ss_pred             CCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             68756243663037871798989999999998541565115564199999875277899999999999998998545776


Q ss_pred             CCHHHHHHHHHHC
Q ss_conf             1045689997501
Q gi|254780545|r  376 VTMQEFEDAKDKI  388 (647)
Q Consensus       376 i~~~dl~~A~~rv  388 (647)
                      |+++||.+|+.++
T Consensus       471 ~~~~~~~~a~~~~  483 (494)
T COG0464         471 VTLDDFLDALKKI  483 (494)
T ss_pred             CCHHHHHHHHHHC
T ss_conf             3499999998624


No 22 
>KOG0652 consensus
Probab=100.00  E-value=0  Score=471.72  Aligned_cols=252  Identities=41%  Similarity=0.686  Sum_probs=242.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             112422569889852889999999-9987433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      ..++|.-+++||+|+|.-.+||-| ||-.+.++++|.++|++||||+|+||||||||||+|+|+|...+..|+...|+++
T Consensus       162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL  241 (424)
T KOG0652         162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL  241 (424)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHH
T ss_conf             04687432000325789999999886145656878874688899722765799975779999998740106887326477


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD  297 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~  297 (647)
                      +.||.|.||+-||+.|..|++.+||||||||+||||.+|-.+-..|..|-.+|+-+||-++|||++++.|-|||||||.|
T Consensus       242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD  321 (424)
T KOG0652         242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD  321 (424)
T ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf             76653341889999998753349838997300232334365312343899999999998604899756267885216434


Q ss_pred             CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             08833316564231410001347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r  298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
                      +|||||||+||+||+|++|+|+.++|..|+++|.+++..++||+++.||+.|.+|.||+...+|-||.+.|.|++...|+
T Consensus       322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~  401 (424)
T KOG0652         322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVT  401 (424)
T ss_pred             CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCC
T ss_conf             34888864466444434889977898899988640057788879899853335667232133005540899864653012


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4568999750136
Q gi|254780545|r  378 MQEFEDAKDKILM  390 (647)
Q Consensus       378 ~~dl~~A~~rv~~  390 (647)
                      .+||.+++..|.+
T Consensus       402 heDfmegI~eVqa  414 (424)
T KOG0652         402 HEDFMEGILEVQA  414 (424)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             7889999999998


No 23 
>KOG0728 consensus
Probab=100.00  E-value=0  Score=460.79  Aligned_cols=251  Identities=42%  Similarity=0.733  Sum_probs=244.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      +..|+.|++=|+|+|....|++|+++. .|+|+.|..+|+--|||+||||||||||||||+|+|....+.|+.+|||+++
T Consensus       139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv  218 (404)
T KOG0728         139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV  218 (404)
T ss_pred             HHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHH
T ss_conf             30783088875038889999999982656687899851878876048846999756299999875414079996449999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .+|.|+|+.-||+||-.||++||+|||.||||+||..|..+.+||..|-.+|+-+||-++|||+..+++-||.||||.|+
T Consensus       219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi  298 (404)
T KOG0728         219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI  298 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf             99850138999999999875088267500001212343457898638999999999974024000366269984164222


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM  378 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~  378 (647)
                      ||||||||||.||+|++|.|+.++|.+||++|.+++.+...+|++.+|...+|-|||++..+|.||.++|.|+.+-.+|+
T Consensus       299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq  378 (404)
T KOG0728         299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ  378 (404)
T ss_pred             CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             46866387754555648998778887899885553013306678999986789863025434335457888765200238


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             568999750136
Q gi|254780545|r  379 QEFEDAKDKILM  390 (647)
Q Consensus       379 ~dl~~A~~rv~~  390 (647)
                      +||+-|+.+|+.
T Consensus       379 edfemav~kvm~  390 (404)
T KOG0728         379 EDFEMAVAKVMQ  390 (404)
T ss_pred             HHHHHHHHHHHH
T ss_conf             889999999972


No 24 
>KOG0735 consensus
Probab=100.00  E-value=0  Score=461.48  Aligned_cols=228  Identities=41%  Similarity=0.712  Sum_probs=218.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             4225698898528899999999987-433567664201233311003787425888999974246997020585788644
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      ..+++|.||+|+.++|+-|+|++.+ -|.|.-|...+.+.+.|||||||||||||+||-|+|.++++.|+++.|+++.++
T Consensus       661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K  740 (952)
T KOG0735         661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK  740 (952)
T ss_pred             CCCCCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHH
T ss_conf             67877100335899999999998554103678860886665545887799985788888888537805998258899998


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             42033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      |.|.++..||++|.+|+..+|||+|+||+|+++++||....|-.|   +++|||||||||.++-.||+|+|||.|||.+|
T Consensus       741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTD---RVVNQlLTelDG~Egl~GV~i~aaTsRpdliD  817 (952)
T KOG0735         741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD---RVVNQLLTELDGAEGLDGVYILAATSRPDLID  817 (952)
T ss_pred             HHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH---HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf             745007889999998651497489712102437666877777429---99999987603633445389997337834367


Q ss_pred             HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             333165642314100013478899999998548877732110245441203798999999999876455320
Q gi|254780545|r  301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN  372 (647)
Q Consensus       301 ~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~  372 (647)
                      ||||||||||+.+++++||..+|.+||++....+.++.++|++.+|..|.|||||||..++..|-+.|+++-
T Consensus       818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~  889 (952)
T KOG0735         818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEI  889 (952)
T ss_pred             HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             766288765401567998928999999998534577521016887652178736659989877799999999


No 25 
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00  E-value=0  Score=441.78  Aligned_cols=242  Identities=37%  Similarity=0.649  Sum_probs=225.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      .+..+++||+||.|++++|...+-|+.||+||++|.+   ..||.|||||||||||||+|||+|+|+.+||+.+.+++++
T Consensus       112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li  188 (368)
T COG1223         112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI  188 (368)
T ss_pred             HHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf             5661366176641639888887999999649687634---5754168778999648799998725457854871168888


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      ..|||.|+.+||+||+.|++.||||+||||+||||-.|.-....| |.. -++|.|||||||...++||+.|||||+|+.
T Consensus       189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG-DVs-EiVNALLTelDgi~eneGVvtIaaTN~p~~  266 (368)
T COG1223         189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG-DVS-EIVNALLTELDGIKENEGVVTIAATNRPEL  266 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCC-CHH-HHHHHHHHHCCCCCCCCCEEEEEECCCHHH
T ss_conf             877435989999999988751984998400245553045788645-499-999999985017445775699950598465


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf             883331656423141000134788999999985488777321102454412037989999-9999987645532024210
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR-NLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~-~~~~eAa~~a~r~~~~~i~  377 (647)
                      ||||+.-  ||+..|++-||+.++|.+|++.|++++|+.-+.+++.+|+.|.||||.||. .+++.|...|+++++..|+
T Consensus       267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~  344 (368)
T COG1223         267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE  344 (368)
T ss_pred             CCHHHHH--HHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             0788886--55650656488858999999998985897655689999998478772068999999999999871344433


Q ss_pred             HHHHHHHHHH
Q ss_conf             4568999750
Q gi|254780545|r  378 MQEFEDAKDK  387 (647)
Q Consensus       378 ~~dl~~A~~r  387 (647)
                      .+||+.|+.+
T Consensus       345 ~edie~al~k  354 (368)
T COG1223         345 REDIEKALKK  354 (368)
T ss_pred             HHHHHHHHHH
T ss_conf             8899999986


No 26 
>pfam01434 Peptidase_M41 Peptidase family M41.
Probab=100.00  E-value=0  Score=430.16  Aligned_cols=192  Identities=51%  Similarity=0.769  Sum_probs=188.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66686677899999999999998505877323432201455564056400244322689999999999987898888861
Q gi|254780545|r  397 TAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF  476 (647)
Q Consensus       397 ~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f  476 (647)
                      ++||++||++|||||||||||+|++++++||+||||+|||++||||++.|.+|++++||.+|+++|+|+|||||||+++|
T Consensus         1 r~ls~~ek~~vA~HEaGHAlva~~l~~~~~v~kvtI~prg~alG~t~~~p~ed~~~~tk~~l~~~I~v~LgGraAEei~f   80 (192)
T pfam01434         1 RVISEEEKRLVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIF   80 (192)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99998999999999999999999846999821799862788763578657301121589999999999863899999981


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             36875652335589999999999862488876673340478767434565677678788999999999999999999999
Q gi|254780545|r  477 GEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKA  556 (647)
Q Consensus       477 G~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a  556 (647)
                      |.+++||||++||++||+||+.||++||||+++||++|....+..|+++.+...+++|++++..||.||++||++||++|
T Consensus        81 G~~~vttGa~~DL~~At~lA~~mV~~~GMs~~lG~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~~~~~a  160 (192)
T pfam01434        81 GDDEVTTGASNDLEQATKIARQMVTEFGMSDKLGPVSLEDSDGGVFLGRGMGSRKEYSEETADIIDEEVRRLLEEAYERA  160 (192)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89987767152299999999999998288776787210367775435556555552239999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999989999999999988854999999999
Q gi|254780545|r  557 KSIIQEKNDNFVAIAEALLEYETLSGKEIASL  588 (647)
Q Consensus       557 ~~iL~~n~~~l~~la~~Lle~EtL~~~ei~~i  588 (647)
                      ++||++|++.|++||++|+++|||+++||++|
T Consensus       161 ~~iL~~n~~~l~~la~~Lle~etL~g~ei~~I  192 (192)
T pfam01434       161 KEILTENRDELDALAEALLEKETLDAEEFREL  192 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHC
T ss_conf             99999949999999999998251679999559


No 27 
>KOG0737 consensus
Probab=100.00  E-value=0  Score=408.96  Aligned_cols=250  Identities=34%  Similarity=0.520  Sum_probs=217.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             000112422569889852889999999998-743356766420-123331100378742588899997424699702058
Q gi|254780545|r  136 KLLSGNVGSVTFKDVAGVDEAKEDLQEIVD-FLCDPQKFKRLG-GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS  213 (647)
Q Consensus       136 k~~~~~~~~v~f~dv~g~~~~k~~~~~~v~-~l~~~~~~~~~g-~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~  213 (647)
                      ..+.+.+.+|+|+||+|+|++|++|+|.|- .|+.|+.|..-+ .+||+||||||||||||||||||+|.|+|.+|+.++
T Consensus        80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~  159 (386)
T KOG0737          80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS  159 (386)
T ss_pred             CCCCHHHCEEEHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             20142232020241335289999999877520124666414531468643051189982188999999987279710001


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--EEEEE
Q ss_conf             5788644420332459999999987378012063235641445578988626889889989985303235778--29999
Q gi|254780545|r  214 GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG--VILIA  291 (647)
Q Consensus       214 ~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~--v~vi~  291 (647)
                      +|.+.++|.|++.+-++.+|-.|.+.+||||||||+|+.-+.|++   +.|.-....-|||....||+.++.+  |+|+|
T Consensus       160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg  236 (386)
T KOG0737         160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSSKDSERVLVLG  236 (386)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             365532667778889999982065348615656658889864046---42799999999999986164678871599970


Q ss_pred             ECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             62981008833316564231410001347889999999854887773211024544120379899999999987645532
Q gi|254780545|r  292 ATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       292 aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
                      |||||..||.|++|  |+-++++|++|+.+.|.+||++.+++-++++++|+..+|+.|.||||.||.++|..|++..+|.
T Consensus       237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire  314 (386)
T KOG0737         237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE  314 (386)
T ss_pred             CCCCCCCHHHHHHH--HCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             79998437899998--4764365379844449999999942434687769888887608986778999999876768999


Q ss_pred             HCCC-CCHHHHHHHHHHCCC
Q ss_conf             0242-104568999750136
Q gi|254780545|r  372 NRRL-VTMQEFEDAKDKILM  390 (647)
Q Consensus       372 ~~~~-i~~~dl~~A~~rv~~  390 (647)
                      =-.. ....|.+.++.....
T Consensus       315 ~~~~~~~~~d~d~~~~d~~~  334 (386)
T KOG0737         315 LLVSETGLLDLDKAIADLKP  334 (386)
T ss_pred             HHHHCCCCCHHHHHHHHCCC
T ss_conf             99851351016666530357


No 28 
>KOG0739 consensus
Probab=100.00  E-value=0  Score=413.42  Aligned_cols=230  Identities=37%  Similarity=0.619  Sum_probs=206.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             11242256988985288999999999-87433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIV-DFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v-~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      .-++|+|+|+||||++.+|+.|+|.| -.+|.|..|+- +-+|.+|+||||||||||+.||||+|.||+..||++|.|++
T Consensus       124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL  202 (439)
T KOG0739         124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL  202 (439)
T ss_pred             HCCCCCCCHHHHCCCHHHHHHHHHHEEECCCCHHHHCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             00389976233014056899987543500025354158-87754257886799975779999987414770687301788


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCC
Q ss_conf             64442033245999999998737801206323564144557898862688988998998530323-57782999962981
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRP  296 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~  296 (647)
                      +++|.|++++-|++||+.||+++|+||||||||++|..|+.+-.   +-..++-.+||++|.|.. .++||+|+||||-|
T Consensus       203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEfLVQMqGVG~d~~gvLVLgATNiP  279 (439)
T KOG0739         203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP  279 (439)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             99873217999999999987349947986344443268877711---777777778887640666588864897237884


Q ss_pred             CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             00883331656423141000134788999999985488777-3211024544120379899999999987645532024
Q gi|254780545|r  297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR  374 (647)
Q Consensus       297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~  374 (647)
                      +.||.|+.|  ||+++|||+||+..+|..+|++|+-+.|+. .+-|+..|++.|.||||+||.-+|+.|.+.-+|+-..
T Consensus       280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs  356 (439)
T KOG0739         280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS  356 (439)
T ss_pred             HHHHHHHHH--HHHCCEECCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             367799998--76502301087378765550320478864133566999976437877675477866644235887510


No 29 
>KOG0651 consensus
Probab=100.00  E-value=0  Score=409.33  Aligned_cols=246  Identities=41%  Similarity=0.679  Sum_probs=233.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             225698898528899999999987-4335676642012333110037874258889999742469970205857886444
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      -+++|+.|+|.-+.-.+++|+|.. |++|+.|.++|++||+|+||||||||||||+|+|+|...|++|+.++.|++++.|
T Consensus       127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky  206 (388)
T KOG0651         127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY  206 (388)
T ss_pred             CCCCHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf             54678771783888899886557402481002345777882568767999864599999998659854774476663300


Q ss_pred             HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf             20332459999999987378012063235641445578988626889889989985303235778299996298100883
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA  301 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~  301 (647)
                      .|+.+.-||+.|..|+...|||||+|||||+|.+|-+.....+.|-.+||..||.+||||+....|-+|.|||+||.|||
T Consensus       207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp  286 (388)
T KOG0651         207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP  286 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCH
T ss_conf             26578899999977865275577510123114577335552059999999999874214012066317985388665665


Q ss_pred             HHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             33165642314100013478899999998548877732110245441203798999999999876455320242104568
Q gi|254780545|r  302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEF  381 (647)
Q Consensus       302 al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl  381 (647)
                      ||+||||+||.|++|+|+..+|..|+++|...+..-..+|.+.+.+.+.||.|||+.|+|.||.+.|++..+..+-++|+
T Consensus       287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~  366 (388)
T KOG0651         287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF  366 (388)
T ss_pred             HHCCCCCCCCEECCCCCCHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             54287521110026885544240267623541133455458999988741570877621234651103034677768889


Q ss_pred             HHHHHHC
Q ss_conf             9997501
Q gi|254780545|r  382 EDAKDKI  388 (647)
Q Consensus       382 ~~A~~rv  388 (647)
                      ..++.++
T Consensus       367 ~k~vrk~  373 (388)
T KOG0651         367 MKLVRKQ  373 (388)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 30 
>KOG0732 consensus
Probab=100.00  E-value=0  Score=396.99  Aligned_cols=250  Identities=40%  Similarity=0.646  Sum_probs=224.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCH
Q ss_conf             24225698898528899999999987-433567664201233311003787425888999974246-----997020585
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISG  214 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~  214 (647)
                      .+..+.|+||||+++++..|+|+|.+ |-.|+.|..+++.||||+||+|||||||||.|+|+|..|     .+.||.-.|
T Consensus       258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg  337 (1080)
T KOG0732         258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG  337 (1080)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf             21036863334578889999998876764056764126689863230289987256888866654054110202443148


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                      ++..++|||+.+...|.||+.|++..|+|||+||||.+++.|++...   ..+.+++..||.-|||+++...|+||||||
T Consensus       338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE---qih~SIvSTLLaLmdGldsRgqVvvigATn  414 (1080)
T KOG0732         338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE---QIHASIVSTLLALMDGLDSRGQVVVIGATN  414 (1080)
T ss_pred             CHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf             44332544757788998898874448517730555664656536677---744567777887604777778658971567


Q ss_pred             CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             81008833316564231410001347889999999854887--7732110245441203798999999999876455320
Q gi|254780545|r  295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN  372 (647)
Q Consensus       295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~  372 (647)
                      ||+.+||||.|||||||.+++++||.++|.+|+.+|.++-.  +.. .-+..+|..|.||.||||..+|.|||+.++|+.
T Consensus       415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~-~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~  493 (1080)
T KOG0732         415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR-ELLLWLAEETSGYGGADLKALCTEAALIALRRS  493 (1080)
T ss_pred             CCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             8332465442886665257503786678889998751577788777-899999886234005789988888755430456


Q ss_pred             C----------------CCCCHHHHHHHHHHCCCCCCC
Q ss_conf             2----------------421045689997501368655
Q gi|254780545|r  373 R----------------RLVTMQEFEDAKDKILMGAER  394 (647)
Q Consensus       373 ~----------------~~i~~~dl~~A~~rv~~G~ek  394 (647)
                      -                ..|...||..|+.|+.--..+
T Consensus       494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R  531 (1080)
T KOG0732         494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR  531 (1080)
T ss_pred             CCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             58142224321345011100267666543003777775


No 31 
>KOG0730 consensus
Probab=100.00  E-value=0  Score=383.57  Aligned_cols=238  Identities=41%  Similarity=0.638  Sum_probs=223.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             4225698898528899999999987-433567664201233311003787425888999974246997020585788644
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      .+.++ +|++|+...-.-+++.|.+ |++|..|...|.++|+|+|||||||||||++++|+|+|+++-||.++|+++++.
T Consensus       179 ~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k  257 (693)
T KOG0730         179 LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK  257 (693)
T ss_pred             CCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf             14445-55413667788889988743016011443189999874443899998189999999973722574062899985


Q ss_pred             HHHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             42033245999999998737-80120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                      |.|++++++|..|++|.+++ |+||||||||+++++|.....   -| .++..|||+.|||......||||+|||||+.|
T Consensus       258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e-~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl  333 (693)
T KOG0730         258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VE-SRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL  333 (693)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCH---HH-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf             246317789999999866599807758767623776433324---88-89999999998527676746999715885556


Q ss_pred             CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             83331656423141000134788999999985488777321102454412037989999999998764553202421045
Q gi|254780545|r  300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQ  379 (647)
Q Consensus       300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~  379 (647)
                      |||+.| ||||+.++|+.|+..+|.+|+++|++++++.+++++..+|..|+||+||||+.+|++|++.+.|+     +++
T Consensus       334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~  407 (693)
T KOG0730         334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLE  407 (693)
T ss_pred             CHHHHC-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_conf             856524-78853157448983358899999986168872556899998734614787999999987776655-----577


Q ss_pred             HHHHHHHHCCC
Q ss_conf             68999750136
Q gi|254780545|r  380 EFEDAKDKILM  390 (647)
Q Consensus       380 dl~~A~~rv~~  390 (647)
                      +|..|...+.-
T Consensus       408 ~~~~A~~~i~p  418 (693)
T KOG0730         408 IFQEALMGIRP  418 (693)
T ss_pred             HHHHHHHCCCC
T ss_conf             78998706870


No 32 
>KOG0741 consensus
Probab=100.00  E-value=0  Score=379.99  Aligned_cols=298  Identities=33%  Similarity=0.528  Sum_probs=228.6

Q ss_pred             CCCCCCCCC--CCCCHHHHHH--HHHHHHHHHHH-HH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             632100001--1242256988--98528899999-99-998743356766420123331100378742588899997424
Q gi|254780545|r  131 GKSKAKLLS--GNVGSVTFKD--VAGVDEAKEDL-QE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       131 GKSkAk~~~--~~~~~v~f~d--v~g~~~~k~~~-~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      |||+.|...  --.|+-.|.+  |+|+|..-..+ +. ...-+=.|+-..++|.+--||+||||||||||||+||-+..=
T Consensus       200 ~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkM  279 (744)
T KOG0741         200 GKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKM  279 (744)
T ss_pred             CCCCCCCHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             36667722112318998714326665117899999998776329988998719511235788779998701899998787


Q ss_pred             CCC-CEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             699-70205857886444203324599999999873--------780120632356414455789886268898899899
Q gi|254780545|r  205 ANV-PFFTISGSDFVELFVGVGASRVRDMFEQAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLL  275 (647)
Q Consensus       205 ~~~-~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll  275 (647)
                      .+. +=--+.|+++.++|||+++++||+||+.|.+-        .--||.+||||||+++||+..+ +...+++++||||
T Consensus       280 LNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLL  358 (744)
T KOG0741         280 LNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLL  358 (744)
T ss_pred             HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCC-CCCCCHHHHHHHH
T ss_conf             457998634757889876063078899998757999984376677259996346799974488789-8863189999999


Q ss_pred             HHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHC
Q ss_conf             853032357782999962981008833316564231410001347889999999854887----7732110245441203
Q gi|254780545|r  276 VEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPG  351 (647)
Q Consensus       276 ~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g  351 (647)
                      +-|||.+.-.+|+|||-|||.|++|+||||||||+-+.+|.|||.++|.+||++|++++.    +++|||+++||.+|..
T Consensus       359 sKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN  438 (744)
T KOG0741         359 SKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN  438 (744)
T ss_pred             HHCCCHHHHHCEEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf             85322876616789940473666788755887169999984688767278887144556651787777698999998557


Q ss_pred             CCHHHHHHHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH------------
Q ss_conf             798999999999876455320---------------24210456899975013686556766686677------------
Q gi|254780545|r  352 FSGADLRNLVNEAALMAARRN---------------RRLVTMQEFEDAKDKILMGAERRSTAMTEEEK------------  404 (647)
Q Consensus       352 ~sgAdi~~~~~eAa~~a~r~~---------------~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek------------  404 (647)
                      ||||+|+.||+-|.-.|..+.               .-.|++.||..|++.|.     ..--.++++.            
T Consensus       439 fSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk-----PAFG~see~l~~~~~~Gmi~~g  513 (744)
T KOG0741         439 FSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK-----PAFGISEEDLERFVMNGMINWG  513 (744)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHEEECHHHHHHHHHHCC-----CCCCCCHHHHHHHHHCCCEEEC
T ss_conf             86267899999888898886613686311271114320202887898987357-----5448788999999857854516


Q ss_pred             -HHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf             -8999999999999985058773234322014
Q gi|254780545|r  405 -KITAYHEAGHAVVACHVPKADPLHKATIIPR  435 (647)
Q Consensus       405 -~~vAyHEAGHAlva~~l~~~~~v~kVTIipR  435 (647)
                       +.+-+.+-|.-+|... +..+.-.-||.+-.
T Consensus       514 ~~v~~il~~G~llv~qv-k~s~~s~lvSvLl~  544 (744)
T KOG0741         514 PPVTRILDDGKLLVQQV-KNSERSPLVSVLLE  544 (744)
T ss_pred             CCHHHHHHHHHHHHHHH-HCCCCCCCEEEEEE
T ss_conf             30778876688999986-33466763589986


No 33 
>KOG0740 consensus
Probab=100.00  E-value=1.4e-45  Score=347.78  Aligned_cols=245  Identities=34%  Similarity=0.564  Sum_probs=211.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf             1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF  217 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~  217 (647)
                      ......|.|+|++|++.+|+-+.|.|-| +..|+.|..+ ..+++|+||.||||||||||++|||.|+++.||++|+|++
T Consensus       144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL  222 (428)
T KOG0740         144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL  222 (428)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC-CCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf             602775413577405668998654232204553765235-4453111200589884479999998620665763068886


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECCC
Q ss_conf             644420332459999999987378012063235641445578988626889889989985303235--778299996298
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--SEGVILIAATNR  295 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--~~~v~vi~aTn~  295 (647)
                      .++|+|.+++-||.||.-||...|+||||||||.+-.+|..+   .|+-..+...++|.++||...  ++.|+||||||+
T Consensus       223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~  299 (428)
T KOG0740         223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR  299 (428)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf             532467077899999999871397089840256788636875---45445556557776540445788870799815888


Q ss_pred             CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             100883331656423141000134788999999985488777-3211024544120379899999999987645532024
Q gi|254780545|r  296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR  374 (647)
Q Consensus       296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~  374 (647)
                      |+.+|.|++|  ||-++++|++||.++|..||+..+++-+.. .+.|++.+|+.|.||||.||.++|.||++--.|....
T Consensus       300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~  377 (428)
T KOG0740         300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG  377 (428)
T ss_pred             CHHHHHHHHH--HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCC
T ss_conf             3677888888--71031553598878999999999976878741778999998861756221889987762384544012


Q ss_pred             -------------CCCHHHHHHHHHHCC
Q ss_conf             -------------210456899975013
Q gi|254780545|r  375 -------------LVTMQEFEDAKDKIL  389 (647)
Q Consensus       375 -------------~i~~~dl~~A~~rv~  389 (647)
                                   .|+..||..|...+.
T Consensus       378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~  405 (428)
T KOG0740         378 TTDLEFIDADKIRPITYPDFKNAFKNIK  405 (428)
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             0114422300258988626899887403


No 34 
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98  E-value=7.5e-32  Score=249.50  Aligned_cols=257  Identities=43%  Similarity=0.640  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf             43356766420123331100378742588899997424699702058578864442033245999999998737801206
Q gi|254780545|r  167 LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFV  246 (647)
Q Consensus       167 l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifi  246 (647)
                      ++.|+.|+.+|..+|+|++++||||||||++|+++|.+ +..++.+++++..++|+|....+.|.+|+.|+..+|||+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~   82 (494)
T COG0464           4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI   82 (494)
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             52479998706676421000368876503665676512-54101356522432220510899999989998639763640


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHH
Q ss_conf             32356414455789886268898899899853032357782999962981008833316564231410001347889999
Q gi|254780545|r  247 DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHI  326 (647)
Q Consensus       247 Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i  326 (647)
                      ||+|++.++|.... +  ....+.+++|+..||++.... |+++++||+++.+|+|+.||||||+.+++..|+...|.+|
T Consensus        83 d~~~~~~~~~~~~~-~--~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i  158 (494)
T COG0464          83 DEIDALAPKRSSDQ-G--EVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI  158 (494)
T ss_pred             CCCCCCCCCCCCCC-C--HHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCHHHHHHCCHHHHHHHHHCCCCHHCCHHH
T ss_conf             44332123444442-1--045789998998764246563-4674134453211277753137678876336541014246


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHHHCCC----CCCCCC
Q ss_conf             9998548877732110245441203798999999999876455320------242104568999750136----865567
Q gi|254780545|r  327 LMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN------RRLVTMQEFEDAKDKILM----GAERRS  396 (647)
Q Consensus       327 ~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~------~~~i~~~dl~~A~~rv~~----G~ek~~  396 (647)
                      ++.|.+.+++.++.+++.+|..+.|++|||+..+|.++++.++++.      ...++..++.+++.++.-    ..+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (494)
T COG0464         159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED  238 (494)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEECCCC
T ss_conf             51011101257864278899873232132488774178888875002333033202199999999861245563003688


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             666866778999999999999985058773234
Q gi|254780545|r  397 TAMTEEEKKITAYHEAGHAVVACHVPKADPLHK  429 (647)
Q Consensus       397 ~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~k  429 (647)
                      ....+. --.--..+.++-.+.+.+...+-..+
T Consensus       239 v~~~di-ggl~~~k~~l~e~v~~~~~~~e~~~~  270 (494)
T COG0464         239 VTLDDI-GGLEEAKEELKEAIETPLKRPELFRK  270 (494)
T ss_pred             CEEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             514532-36377999999999999970887632


No 35 
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.97  E-value=5.2e-32  Score=250.62  Aligned_cols=130  Identities=58%  Similarity=0.931  Sum_probs=118.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      +|||||||||||++|+|+|.+++.||+.++++++...|+|.++.+++++|+.|++.+||||||||+|+++++|.....+ 
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~~~~~-   79 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDS-   79 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCCC-
T ss_conf             9878999999999999999997898533242012223345068889999999997499189831167775167888887-


Q ss_pred             CHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf             26889889989985303235-7782999962981008833316564231410001
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFES-SEGVILIAATNRPDVLDAALLRPGRFDRQITVPN  317 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~-~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~  317 (647)
                        ....++++||.+||++.. ..+|++||+||+|+.||||++| ||||++|++++
T Consensus        80 --~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r-~Rfd~~i~~pl  131 (131)
T pfam00004        80 --ESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLR-GRFDRIIEFPL  131 (131)
T ss_pred             --CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHC-CCCEEEEEECC
T ss_conf             --51326878999985022468876999975990449977962-83328998069


No 36 
>KOG0743 consensus
Probab=99.93  E-value=1.8e-25  Score=203.32  Aligned_cols=277  Identities=22%  Similarity=0.258  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf             89999999999999999999999851---677887776766-321000011242256988985288999999-9998743
Q gi|254780545|r   94 GLLSYLGSWFPLVLVVLVWMFLMRQI---QGGGARGAMGFG-KSKAKLLSGNVGSVTFKDVAGVDEAKEDLQ-EIVDFLC  168 (647)
Q Consensus        94 ~~~~iL~~~LPliLli~i~~fl~rr~---~gGg~~~~msfG-KSkAk~~~~~~~~v~f~dv~g~~~~k~~~~-~~v~~l~  168 (647)
                      .+-.++.++|+.+.-.+-=+--.++.   ....++..+.-. .++=+-+.-+.| -||+-+|=-.+.|+++. ++.+|++
T Consensus       144 ~~e~V~~syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k  222 (457)
T KOG0743         144 PRELVTLSYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHP-STFETLAMDPDLKERIIDDLDDFIK  222 (457)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             277767867888999999999988987776158875112435776125689999-8744201486678999999999972


Q ss_pred             HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf             35676642012333110037874258889999742469970205857886444203324599999999873780120632
Q gi|254780545|r  169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       169 ~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe  248 (647)
                      ..+-|.+.|.-.-||-|||||||||||-+--|+|++.+-..+-..-++.     +.. +-+|.|.-.+..  -|||.|.+
T Consensus       223 ~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~~n-~dLr~LL~~t~~--kSIivIED  294 (457)
T KOG0743         223 GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----KLD-SDLRHLLLATPN--KSILLIED  294 (457)
T ss_pred             CCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCC-----CCC-HHHHHHHHHCCC--CCEEEEEE
T ss_conf             2357886484500041204799998889999997205873677440023-----683-899999972899--71899961


Q ss_pred             HHHHHC--CCCCC-CCCCC-HHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf             356414--45578-98862-688988998998530323577--8299996298100883331656423141000134788
Q gi|254780545|r  249 IDAVGR--HRGIG-LGGGN-DEREQTLNQLLVEMDGFESSE--GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVG  322 (647)
Q Consensus       249 ida~~~--~r~~~-~~~~~-~e~~~~ln~ll~~mdg~~~~~--~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~  322 (647)
                      ||+=..  .|... ..+.+ +...-||..||-.+||.-++.  --|+|-+||++|.|||||+||||.|.||+++.-+..+
T Consensus       295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~  374 (457)
T KOG0743         295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA  374 (457)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCHHHCCCCCCEEEEECCCCCHHH
T ss_conf             24323044345556645467766066477566413430048873499994687100688662887522566726698799


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999998548877732110245441203--798999999999876455320242104568999750
Q gi|254780545|r  323 REHILMVHSRNVPLAPNVILKTIARGTPG--FSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDK  387 (647)
Q Consensus       323 r~~i~~~~~~~~~~~~~~d~~~la~~t~g--~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~r  387 (647)
                      -+..++-|+.-.-  +..-++++.+.-.+  .|+||++...     ..-++ ...+..+.+.+++..
T Consensus       375 fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l-----m~~~~-dad~~lk~Lv~~l~~  433 (457)
T KOG0743         375 FKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL-----MKNKN-DADVALKGLVEALES  433 (457)
T ss_pred             HHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHH-----HHCCC-CHHHHHHHHHHHHHH
T ss_conf             9999998338988--73067999987633746899999998-----63565-388999999999876


No 37 
>KOG0742 consensus
Probab=99.93  E-value=7.7e-25  Score=198.73  Aligned_cols=218  Identities=28%  Similarity=0.428  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             42256988985288999999999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      .++--|.||.=....+..+..+-.--.|.++    .--|-|.|||||||||||||+||-+|...|..+--+.|-|+--+ 
T Consensus       349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-  423 (630)
T KOG0742         349 RGKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-  423 (630)
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHHHHCCCCC----CCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCC-
T ss_conf             5777767841277799999999887404300----24304400324799986049999998852874100137875552-


Q ss_pred             HHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             2033245999999998737-801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      .-.+-.+|+.||+-|++.. .-++||||.||+-..|+...++ .+ ...+||.||--- | +.+..++++-|||+|..||
T Consensus       424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymS-Ea-qRsaLNAlLfRT-G-dqSrdivLvlAtNrpgdlD  499 (630)
T KOG0742         424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS-EA-QRSALNALLFRT-G-DQSRDIVLVLATNRPGDLD  499 (630)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHC-C-CCCCCEEEEEECCCCCCHH
T ss_conf             178899999987887515664499861167899875201025-88-999998898762-5-6554268996058832101


Q ss_pred             HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC---C---------------------CCCC---CCHHHHHHHHHCCC
Q ss_conf             3331656423141000134788999999985488---7---------------------7732---11024544120379
Q gi|254780545|r  301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNV---P---------------------LAPN---VILKTIARGTPGFS  353 (647)
Q Consensus       301 ~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~---~---------------------~~~~---~d~~~la~~t~g~s  353 (647)
                      .|+--  |||..|+++||..++|..+|..|+.+-   |                     +..+   --+...|+.|.|||
T Consensus       500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS  577 (630)
T KOG0742         500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS  577 (630)
T ss_pred             HHHHH--HHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             67876--5554130689977899999999999981477777897215577764401554434318889999998606875


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999876455320
Q gi|254780545|r  354 GADLRNLVNEAALMAARRN  372 (647)
Q Consensus       354 gAdi~~~~~eAa~~a~r~~  372 (647)
                      |.+|+.|+  |...|+-.+
T Consensus       578 GREiakLv--a~vQAavYg  594 (630)
T KOG0742         578 GREIAKLV--ASVQAAVYG  594 (630)
T ss_pred             HHHHHHHH--HHHHHHHHC
T ss_conf             78999999--998898850


No 38 
>CHL00026 ycf2 Ycf2
Probab=99.92  E-value=3.9e-24  Score=193.62  Aligned_cols=309  Identities=22%  Similarity=0.297  Sum_probs=219.9

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH---------------------------------
Q ss_conf             42012333110037874258889999742469970205857886444---------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF---------------------------------  221 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~---------------------------------  221 (647)
                      ++|..||||+||.||.|||...|.|-+|...-|||+.++-..|..-.                                 
T Consensus      1624 ~LglspSkGILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~nkp~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 1703 (2286)
T CHL00026       1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELEL 1703 (2286)
T ss_pred             ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             11678767527978876666899998774263740896389984138643455543332233322210010000001120


Q ss_pred             ----------HHCCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CC--CCCC
Q ss_conf             ----------2033245--9999999987378012063235641445578988626889889989985303-23--5778
Q gi|254780545|r  222 ----------VGVGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-FE--SSEG  286 (647)
Q Consensus       222 ----------~g~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~~--~~~~  286 (647)
                                ....-.+  +--.|+.|++.+||||+|..|..+-.....      .   -.|.-|+..|.+ ++  ...+
T Consensus      1704 ~t~~~~~~~~~~~~i~~~~i~LqFELAk~MSPCIIWIpnIHeLnvnd~~------~---l~LglL~n~ls~d~e~~strN 1774 (2286)
T CHL00026       1704 LTMMNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESN------Y---LSLGLLVNYLSRDCERCSTRN 1774 (2286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCC------H---HHHHHHHHHHCCCCCCCCCCC
T ss_conf             0000034443233334444578899987549807961767660567762------1---469999998425643345245


Q ss_pred             EEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             299996298100883331656423141000134788999999985--48877732-110245441203798999999999
Q gi|254780545|r  287 VILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPN-VILKTIARGTPGFSGADLRNLVNE  363 (647)
Q Consensus       287 v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~-~d~~~la~~t~g~sgAdi~~~~~e  363 (647)
                      ++|||.|.-|..+||||.-|-|||+.|.+.....--|++=|-+.+  ++..+..+ ..+......|.|++..||+.|.||
T Consensus      1775 ilVIASTHiPqKVDPALIaPNRLdt~IniR~l~ipQr~K~F~iLl~tkGF~lek~~f~~n~FGS~T~GynaRDL~aL~NE 1854 (2286)
T CHL00026       1775 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1854 (2286)
T ss_pred             EEEEECCCCCCCCCHHHCCCCCHHHHEEEHCCCCHHHHHHHHHEEECCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf             18997067877668110585302031120004666654144430003551112555554665640058877889998654


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH------HCCCC
Q ss_conf             876455320242104568999750136865567666866778999999999999985058773234322------01455
Q gi|254780545|r  364 AALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI------IPRGR  437 (647)
Q Consensus       364 Aa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI------ipRg~  437 (647)
                      |.+..+-+++..|+...+.-|+-|..+|.....+...+   +-+-.+..|.||+...|-...|+.-+||      ..+|.
T Consensus      1855 aL~ISItq~KSiIdtnTIr~AlhRQtw~l~~~v~~~~~---~giLfYkIGkAviQN~Ll~n~~idPiSiy~~k~~~kk~~ 1931 (2286)
T CHL00026       1855 ALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQD---HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCNEGD 1931 (2286)
T ss_pred             HHEEEEECCCCEEECCHHHHHHHHHHHHHCCCCCCCCC---CCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             63133304763540212889998887601334551355---655540464999999998438997068875143442465


Q ss_pred             CCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHHH
Q ss_conf             564056400244322689999999999987898888861--36---87565--23355899999999
Q gi|254780545|r  438 ALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLAR  497 (647)
Q Consensus       438 alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA~  497 (647)
                      .-=+-||+...  ..+-+=.++-.|-.|+||-||-...|  |.   +.++.  =+.||..-|-.+-.
T Consensus      1932 ~YLskWYlE~~--TtmKelTIL~yiL~ClAGsaArDsWsl~~~~~eN~I~~d~lvEND~dLa~glLE 1996 (2286)
T CHL00026       1932 SYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGFVENDSDLVHGLLE 1996 (2286)
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             05777663356--329999999999874421566652257898655674034320143798999998


No 39 
>CHL00179 consensus
Probab=99.92  E-value=2.1e-24  Score=195.55  Aligned_cols=312  Identities=20%  Similarity=0.259  Sum_probs=221.1

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH------------------------------------
Q ss_conf             42012333110037874258889999742469970205857886------------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV------------------------------------  218 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~------------------------------------  218 (647)
                      ++|..|+||+||.||.|||...|.|-+|...=|||+.++-..|.                                    
T Consensus      1594 ~L~lspSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ 1673 (2262)
T CHL00179       1594 RLALPPSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKFLDDNKGYLIDDIDIDDRDDIDIDDRDDIDDDLDTELL 1673 (2262)
T ss_pred             ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             02778767627978776666899988764253751895177763358654456444443322344431111100344441


Q ss_pred             ------HHHHHCCHH--HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCE
Q ss_conf             ------444203324--599999999873780120632356414455789886268898899899853032---357782
Q gi|254780545|r  219 ------ELFVGVGAS--RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF---ESSEGV  287 (647)
Q Consensus       219 ------~~~~g~g~~--~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~---~~~~~v  287 (647)
                            .|+......  ++--.|+.|++.+||||+|-.|.-+-.++....         .|.-||-.+.+-   ....++
T Consensus      1674 t~~n~l~~~~~~~~~~f~itLqfELAk~MSPCIIWIPNIHdL~vNes~~l---------~LGlLln~ls~d~er~strNi 1744 (2262)
T CHL00179       1674 TMPNVLTMYMTPKIDQFEITLPLELAKAMSPCIIWIPNIHDLYVNESNYL---------SLGLLVNHLPRDCERCSTRNI 1744 (2262)
T ss_pred             CCCCCHHHHHHHHHHHEEHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCH---------HHHHHHHHHCCCCCCCCCCCE
T ss_conf             26530025654222440017989999864983797075332256754403---------589999873244200243454


Q ss_pred             EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99996298100883331656423141000134788999999985--48877732-1102454412037989999999998
Q gi|254780545|r  288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPN-VILKTIARGTPGFSGADLRNLVNEA  364 (647)
Q Consensus       288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~-~d~~~la~~t~g~sgAdi~~~~~eA  364 (647)
                      +|||.|.-|..+||||+-|-|+|+.|.+.....-.|++=|-+.+  ++.-+..+ ..+......|.|++..||+.|.|||
T Consensus      1745 lVIASTHIPqKVDPaLIaPNRLdt~InIRrLlipQrrK~F~iLl~tkGF~lekk~~~~n~FGSiTmG~naRDL~aL~NEa 1824 (2262)
T CHL00179       1745 LVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRKHFFILSYTRGFRLEKKMSHTNGFGSITMGSNARDLVALTNEV 1824 (2262)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHEEECCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf             89962788876780004865334236642036666530333123035522214455657766510588688899986546


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--H----CCCCC
Q ss_conf             76455320242104568999750136865567666866778999999999999985058773234322--0----14555
Q gi|254780545|r  365 ALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--I----PRGRA  438 (647)
Q Consensus       365 a~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--i----pRg~a  438 (647)
                      ....+-+++..|+...+.-|+-|..+|..  +.+-+-.. +-+-.+..|.||+...|-...|+.-+||  -    .+|..
T Consensus      1825 LsISItqkKSiIdtnTIR~ALhRQtw~l~--sqv~~~q~-~giLfYqIGkAV~QN~Ll~n~~idPiSiymkkk~~k~~~s 1901 (2262)
T CHL00179       1825 LSISITQKKSIIDTNTIRSALHRQTWDLR--SQVRSVQD-HEILFYQIGRAVAQNVLLSNCSIDPISIYMKKKSCKEGDS 1901 (2262)
T ss_pred             HEEEEECCCCEEECCHHHHHHHHHHHHHC--CCCCCCCC-CCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf             21333136524401038899888775101--33551356-7666401519999999985389971888864421355660


Q ss_pred             CCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf             64056400244322689999999999987898888861--36---87565--23355899999999998
Q gi|254780545|r  439 LGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLARVMV  500 (647)
Q Consensus       439 lG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA~~mV  500 (647)
                      -=+-||....  ..+-+=.++-.|..|+||-||-...+  |.   +.++.  =+.||..-|..+--...
T Consensus      1902 YLskWYlElg--TsmKelTIL~yiL~ClAGsaAqDsWsi~gp~~eN~I~~d~~vEnDsdLa~gLLE~~L 1968 (2262)
T CHL00179       1902 YLSKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSPPGPDEKNWITSYGFVENDSDLVHGLLESAL 1968 (2262)
T ss_pred             HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             4676664166--238999999999860000567652368898655674334310032688999888776


No 40 
>CHL00178 consensus
Probab=99.91  E-value=7.3e-24  Score=191.66  Aligned_cols=308  Identities=21%  Similarity=0.284  Sum_probs=216.1

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH---------------------------------
Q ss_conf             42012333110037874258889999742469970205857886444---------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF---------------------------------  221 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~---------------------------------  221 (647)
                      ++|..|+||+||.||.|||...|.|-+|...=|||+.++-..|....                                 
T Consensus      1452 rL~lspSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~L~nkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1531 (2133)
T CHL00178       1452 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPEGFLIDDIDIDASDDIDASDDIDASDDIDASD 1531 (2133)
T ss_pred             ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02777667637978776666899988764253751895078873458766645534432100123211123332322222


Q ss_pred             ----------------HHCCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf             ----------------2033245--99999999873780120632356414455789886268898899899853032--
Q gi|254780545|r  222 ----------------VGVGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF--  281 (647)
Q Consensus       222 ----------------~g~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~--  281 (647)
                                      ....-.|  +--.|+.|++.+||||+|..|..+-.++...         -.|.-||-.+.+-  
T Consensus      1532 d~~~~~~t~~~~~~~d~~~~i~rf~itLqFELAK~MSPCIIWIPNIHeLnvnes~~---------~~LglLln~Ls~d~e 1602 (2133)
T CHL00178       1532 DIDRDLHTELELLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNY---------FSLGLLVNHLSRDCE 1602 (2133)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCH---------HHHHHHHHHHCCCCC
T ss_conf             10000000013456544444455656888999875498279717654335675531---------579999987424320


Q ss_pred             -CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH--HCCCCCCCC-CCHHHHHHHHHCCCHHHH
Q ss_conf             -3577829999629810088333165642314100013478899999998--548877732-110245441203798999
Q gi|254780545|r  282 -ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH--SRNVPLAPN-VILKTIARGTPGFSGADL  357 (647)
Q Consensus       282 -~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~--~~~~~~~~~-~d~~~la~~t~g~sgAdi  357 (647)
                       ....+++|||.|.-|..+||||+-|-|||+.|.+.....--|++=|-+.  .++.-+..+ ..+......|.|++..||
T Consensus      1603 r~StrNilVIASTHIPqKVDPALIaPNRLdt~InIRrLlIpQrrK~F~iLl~tkGF~leKkmf~~n~FGSiTmGynaRDL 1682 (2133)
T CHL00178       1603 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFRLEKKMFHTNGFGSITMGSNARDL 1682 (2133)
T ss_pred             CCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEEEECCCHHHHHHHHEEEECCCCEECCCCCCCCCCCCEECCCCHHHH
T ss_conf             02424548996278887678100586422302554203666653023303303552012445565776651058868889


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HC-
Q ss_conf             999999876455320242104568999750136865567666866778999999999999985058773234322--01-
Q gi|254780545|r  358 RNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--IP-  434 (647)
Q Consensus       358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--ip-  434 (647)
                      +.|.|||....+-+++..|+...+.-|+-|..+|.+  +++-+-.. +-+-.+..|.||+...|-...|+.-+||  -. 
T Consensus      1683 ~aL~NEaLsISItqkKSiIDTnTIR~ALhRQtw~l~--sqv~~~q~-hgiLfYkIGkAViQN~Ll~n~~idPiSiY~kKk 1759 (2133)
T CHL00178       1683 VALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLR--SQVRSVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYIKKK 1759 (2133)
T ss_pred             HHHHHHHHEEEEECCCCEEECCHHHHHHHHHHHCCC--CCCCCCCC-CCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             998654611343136524401038899888765200--11461456-766764140999999998539997178886430


Q ss_pred             ---CCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHH
Q ss_conf             ---455564056400244322689999999999987898888861--36---87565--2335589999999
Q gi|254780545|r  435 ---RGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLA  496 (647)
Q Consensus       435 ---Rg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA  496 (647)
                         .|..-=+-||+...  ..+-+=.++-.|-.|+||-||-...+  |.   +.|+.  =+.||..-|-.+-
T Consensus      1760 ~~k~~~~YLskWYlElg--TsmKelTIL~yIL~ClAGSaAqDsWsl~epn~eN~I~~d~lvENDsdLv~glL 1829 (2133)
T CHL00178       1760 SCNEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLL 1829 (2133)
T ss_pred             CCCCCCCHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             15556724666554166--24899999999975012256765236889865567313442126458888898


No 41 
>KOG0736 consensus
Probab=99.90  E-value=1.3e-22  Score=182.51  Aligned_cols=229  Identities=30%  Similarity=0.454  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf             99987433567664201233311003787425888999974246997020585788644420332459999999987378
Q gi|254780545|r  162 EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSP  241 (647)
Q Consensus       162 ~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p  241 (647)
                      +.+++|.-+..-...+.+.---+||+||||||||.+.+++|.+.|.++|.+++.+++.---+-.+.+....|.+||...|
T Consensus       412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p  491 (953)
T KOG0736         412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP  491 (953)
T ss_pred             HHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99998486558530013355379986799987579999999983872570138988643633137899999998752686


Q ss_pred             HHEEHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHH
Q ss_conf             012063235641445578988626889-88998998530323-5778299996298100883331656423141000134
Q gi|254780545|r  242 CIVFVDEIDAVGRHRGIGLGGGNDERE-QTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD  319 (647)
Q Consensus       242 ~iifiDeida~~~~r~~~~~~~~~e~~-~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~  319 (647)
                      ||||+-.+|.++..+..    +.|-|- +.++++|. .|-|. ...+++|+|+|+..+.+.+-+.+  -|=..|.++.|+
T Consensus       492 avifl~~~dvl~id~dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls  564 (953)
T KOG0736         492 AVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS  564 (953)
T ss_pred             EEEEEECCCEEEECCCC----CHHHHHHHHHHHHHH-CCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHHHHCCCCCCC
T ss_conf             28987224245533777----442779999999972-02356779965999962530239878987--526521377888


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHHHC-----------------CCCCHH
Q ss_conf             7889999999854887773211024544120379899999999987645---53202-----------------421045
Q gi|254780545|r  320 IVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA---ARRNR-----------------RLVTMQ  379 (647)
Q Consensus       320 ~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a---~r~~~-----------------~~i~~~  379 (647)
                      .+.|.+||+.|+...+++.++.+..+|++|.|||-+|++.++..+.+.+   +.+..                 ..++++
T Consensus       565 e~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~e  644 (953)
T KOG0736         565 EEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEE  644 (953)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEECHH
T ss_conf             78899999999830652357787899986589877779977147518889999752014431110245401246410198


Q ss_pred             HHHHHHHHC------CCCCCCCCC
Q ss_conf             689997501------368655676
Q gi|254780545|r  380 EFEDAKDKI------LMGAERRST  397 (647)
Q Consensus       380 dl~~A~~rv------~~G~ek~~~  397 (647)
                      ||..|++|.      -.|.+|-..
T Consensus       645 df~kals~~~~~fs~aiGAPKIPn  668 (953)
T KOG0736         645 DFDKALSRLQKEFSDAIGAPKIPN  668 (953)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             888898898886555307988896


No 42 
>KOG0744 consensus
Probab=99.86  E-value=1e-20  Score=168.87  Aligned_cols=236  Identities=23%  Similarity=0.287  Sum_probs=165.8

Q ss_pred             CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCC-------
Q ss_conf             2256988985----288999999999874335676642012-----333110037874258889999742469-------
Q gi|254780545|r  143 GSVTFKDVAG----VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEAN-------  206 (647)
Q Consensus       143 ~~v~f~dv~g----~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~-------  206 (647)
                      |.+.|+-.+-    --+.|++|...+.   ..-+|.+.+..     .-|=+||+||||||||-|.||+|....       
T Consensus       133 Pa~eF~glWEsLiyds~lK~~ll~Ya~---s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y  209 (423)
T KOG0744         133 PAAEFDGLWESLIYDSNLKERLLSYAA---SALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY  209 (423)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
T ss_conf             511543057887641328999999999---99888761788744664148998579998822799999875146523764


Q ss_pred             --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC---CHH--EEHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf             --9702058578864442033245999999998737---801--20632356414455789886-268898899899853
Q gi|254780545|r  207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS---PCI--VFVDEIDAVGRHRGIGLGGG-NDEREQTLNQLLVEM  278 (647)
Q Consensus       207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~---p~i--ifiDeida~~~~r~~~~~~~-~~e~~~~ln~ll~~m  278 (647)
                        .-.+.++.-++.++|.+++.+.|-.+|++..+..   .|.  +.|||..+++..|.+...+. -...-+++|.|||+|
T Consensus       210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl  289 (423)
T KOG0744         210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL  289 (423)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             44069997046788988712113899999999999717896899980787888999875413799821899999999989


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC--------CCC-----
Q ss_conf             032357782999962981008833316564231410001347889999999854887-----77--------321-----
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA--------PNV-----  340 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~--------~~~-----  340 (647)
                      |.+....+|+++++.|-.+.||-|+.-  |-|-+.+|+.|...+|.+|++..+..+-     +.        ..+     
T Consensus       290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~  367 (423)
T KOG0744         290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA  367 (423)
T ss_pred             HHHCCCCCEEEEECCCHHHHHHHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
T ss_conf             986047977999626267777888611--754211038963999999999999999863843210000005677676676


Q ss_pred             CHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             10245441-2037989999999998764553202421045689997
Q gi|254780545|r  341 ILKTIARG-TPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       341 d~~~la~~-t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      ....++.. +.|.||.-|..+---|  +|.--....|+.++|..|+
T Consensus       368 ~~~~~~~~~~~gLSGRtlrkLP~La--ha~y~~~~~v~~~~fl~al  411 (423)
T KOG0744         368 LRNILIELSTVGLSGRTLRKLPLLA--HAEYFRTFTVDLSNFLLAL  411 (423)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCCCCCCHHHHHHHH
T ss_conf             7899998864477620576515888--8740677864868999999


No 43 
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.83  E-value=2.8e-20  Score=165.72  Aligned_cols=129  Identities=39%  Similarity=0.516  Sum_probs=100.7

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHH---HHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             233311003787425888999974246---997020585788644420332459---99999998737801206323564
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRV---RDMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~v---r~lf~~a~~~~p~iifiDeida~  252 (647)
                      .+|+++||+||||||||++|+++|.++   +.+|+.++.+++.+.+.+.+..+.   +..+..+....|||+||||||.+
T Consensus        17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l   96 (151)
T cd00009          17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL   96 (151)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf             79980899899998865999999997121379827854777046777757605778898999999769986982016655


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf             14455789886268898899899853032357782999962981008833316564231410001
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPN  317 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~  317 (647)
                      .+.          .....++.|...++.-....++.+|++||+++..|+..-+++|||.+|.+++
T Consensus        97 ~~~----------~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~~~~~~~~~~R~~~~i~~~~  151 (151)
T cd00009          97 SRG----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL  151 (151)
T ss_pred             CHH----------HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEECCC
T ss_conf             999----------9999999998715754067888999952899886837764255986986389


No 44 
>CHL00181 cbbX CbbX; Provisional
Probab=99.81  E-value=1.9e-18  Score=152.43  Aligned_cols=209  Identities=23%  Similarity=0.346  Sum_probs=156.8

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEECCCCCHHHHHHHHHHHCC---CC----CCEECCCH
Q ss_conf             698-898528899999999987433567664201233---31100378742588899997424---69----97020585
Q gi|254780545|r  146 TFK-DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HGVLLVGPPGTGKTLLARAVAGE---AN----VPFFTISG  214 (647)
Q Consensus       146 ~f~-dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g~ll~GppGtGKTlla~a~a~e---~~----~~f~~~~~  214 (647)
                      -.+ +..|++.+|+++.+++.+++--..-...|..++   ..++|.||||||||..||.+|.=   .|    -.|+.++.
T Consensus        20 eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r   99 (287)
T CHL00181         20 ELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTR   99 (287)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECH
T ss_conf             99886469699999999999999999999987999888765388878998679999999999999869955895899535


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                      ++|+..|+|.++.+.+++++.|+   ..|+||||.-++....+     .+|-....++.|+..|+.  ..+.++||.|--
T Consensus       100 ~dLvg~yvG~Ta~kt~~~i~~a~---GGVLfIDEAY~L~~~~~-----~~dfg~eaidtLl~~me~--~~~~lvvI~AGY  169 (287)
T CHL00181        100 DDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGAEAIEILLQVMEN--QRDDLVVIFAGY  169 (287)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHCC---CCEEEEECHHHHCCCCC-----CCCCHHHHHHHHHHHHHH--CCCCEEEEEECC
T ss_conf             88416353521699999999645---98799824465357889-----998379999999999870--799889998467


Q ss_pred             CCCCCC------HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCCC---HHHHHH--HHHCC-CHHHHHHH
Q ss_conf             810088------3331656423141000134788999999985488--7773211---024544--12037-98999999
Q gi|254780545|r  295 RPDVLD------AALLRPGRFDRQITVPNPDIVGREHILMVHSRNV--PLAPNVI---LKTIAR--GTPGF-SGADLRNL  360 (647)
Q Consensus       295 ~~~~lD------~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~d---~~~la~--~t~g~-sgAdi~~~  360 (647)
                       ++.++      |.|.+  ||.+.|.++-=+.++-.+|++.++++.  .++++..   .+.+.+  ..++| -|.++.|+
T Consensus       170 -~~eM~~fl~~NpGL~s--Rf~~~i~F~dYt~~EL~~I~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl  246 (287)
T CHL00181        170 -KDRMDKFYESNPGLSS--RVANHVDFPDYTPEELLQIAKMMLEEQQYQLTPEAEKVLLDYIKRRMEQPLFANARSVRNA  246 (287)
T ss_pred             -HHHHHHHHHHCCCHHH--HCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             -8999999985904787--6887237798599999999999999869825879999999999985089998748999999


Q ss_pred             HHHHHHH
Q ss_conf             9998764
Q gi|254780545|r  361 VNEAALM  367 (647)
Q Consensus       361 ~~eAa~~  367 (647)
                      +..|...
T Consensus       247 ~e~a~~~  253 (287)
T CHL00181        247 IDRARMR  253 (287)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 45 
>KOG0735 consensus
Probab=99.81  E-value=7.1e-19  Score=155.59  Aligned_cols=238  Identities=21%  Similarity=0.238  Sum_probs=163.4

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCC----EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf             33311003787425888999974246997----02058578864442033245999999998737801206323564144
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVP----FFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~----f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~  255 (647)
                      -+..+||+||+|||||-||||++.+..-+    +..+++|.+-..-+----+-++..|..|-.++|+||.+|.+|+++. 
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-  508 (952)
T KOG0735         430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-  508 (952)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHC-
T ss_conf             4661898679987776999999987515650699997522104204899999999999998863780899705035405-


Q ss_pred             CCCCCCCC-CHHHHHHHHHHHHHH-CCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             55789886-268898899899853-0323-57782999962981008833316564231410001347889999999854
Q gi|254780545|r  256 RGIGLGGG-NDEREQTLNQLLVEM-DGFE-SSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       256 r~~~~~~~-~~e~~~~ln~ll~~m-dg~~-~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                       +++..+| .++..+-++.+|.+| +-|. .+.-|.+||.-+-...|.|-|--|++|+.++.++.|+...|++||+...+
T Consensus       509 -~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s  587 (952)
T KOG0735         509 -ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS  587 (952)
T ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             -6844477302899999999999999987068579999851434203853347631478881589235679999999997


Q ss_pred             CCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHCCC----CCCCCCCCCCHHH
Q ss_conf             887773-21102454412037989999999998764553----20242104568999750136----8655676668667
Q gi|254780545|r  333 NVPLAP-NVILKTIARGTPGFSGADLRNLVNEAALMAAR----RNRRLVTMQEFEDAKDKILM----GAERRSTAMTEEE  403 (647)
Q Consensus       333 ~~~~~~-~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r----~~~~~i~~~dl~~A~~rv~~----G~ek~~~~~~~~e  403 (647)
                      +.-.+. .-|++-++..|+||..-|+.-++..|-..|.+    .+.+.++.++|.+++.--.-    |. +....-.=.-
T Consensus       588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~i-k~~k~tgi~w  666 (952)
T KOG0735         588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGI-KLVKSTGIRW  666 (952)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHC-CCCCCCCCCC
T ss_conf             553454567899888760784404479999999999998875167631018899999874076776403-0156678771


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             78999999999999985
Q gi|254780545|r  404 KKITAYHEAGHAVVACH  420 (647)
Q Consensus       404 k~~vAyHEAGHAlva~~  420 (647)
                      -.+-..||+-.++.-.+
T Consensus       667 ~digg~~~~k~~l~~~i  683 (952)
T KOG0735         667 EDIGGLFEAKKVLEEVI  683 (952)
T ss_pred             EECCCHHHHHHHHHHHH
T ss_conf             00335899999999998


No 46 
>PRK04195 replication factor C large subunit; Provisional
Probab=99.79  E-value=3.5e-17  Score=143.36  Aligned_cols=226  Identities=24%  Similarity=0.359  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf             56988985288999999999-87433567664201233-31100378742588899997424699702058578864442
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIV-DFLCDPQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV  222 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v-~~l~~~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~  222 (647)
                      .+|+||.|++++++.|.+.+ .|++        | ++| |.+||+||||||||.+|+++|.+.|..++.+.+||...   
T Consensus        11 k~~~divg~~~~v~~l~~Wl~~w~~--------g-~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~---   78 (403)
T PRK04195         11 KSLSDVVGNEKAKKQLREWIESWLK--------G-KPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---   78 (403)
T ss_pred             CCHHHHHCCHHHHHHHHHHHHHHHC--------C-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCC---
T ss_conf             9899985889999999999999873--------9-965746998893998799999999998499859977101147---


Q ss_pred             HCCHHHHHHHHHHHHHH------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             03324599999999873------780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  223 GVGASRVRDMFEQAKNN------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       223 g~g~~~vr~lf~~a~~~------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                         ...||.....+-.+      ..-||++||+|.+-..-.  . ||    .+.|.+++      ..... -+|..+|.+
T Consensus        79 ---~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d--~-gg----~~al~~~i------k~s~~-PiIli~Nd~  141 (403)
T PRK04195         79 ---KDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNAD--R-GG----VRAILEII------KKAKN-PIILTANDP  141 (403)
T ss_pred             ---HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHH--H-HH----HHHHHHHH------HCCCC-EEEEEECCC
T ss_conf             ---89999999987606887788734999634344572444--7-99----99999998------54887-089982684


Q ss_pred             CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             008833316564231410001347889999999854--887773211024544120379899999999987645532024
Q gi|254780545|r  297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR  374 (647)
Q Consensus       297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~  374 (647)
                      ...-+.-+|+ | =..|.+..|+...-...|+.-++  +++++++ .++.||+.+    +.||...+|.  |.+...+..
T Consensus       142 ~~~~~~~lrs-~-c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~-aL~~Ia~~s----~GDlR~aIN~--LQ~~~~~~~  212 (403)
T PRK04195        142 YDPSLRPLRN-A-CLMIEFKRLSKRSIVPVLKRICRKEGIECEEE-ALREIAERS----GGDLRSAIND--LQAIAEGGG  212 (403)
T ss_pred             CCCCHHHHHH-H-HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHC----CCHHHHHHHH--HHHHHCCCC
T ss_conf             5567177997-6-61221799499999999999999769999999-999999987----9739999999--999974899


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHH
Q ss_conf             210456899975013686556766686677899-----9999999999
Q gi|254780545|r  375 LVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT-----AYHEAGHAVV  417 (647)
Q Consensus       375 ~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v-----AyHEAGHAlv  417 (647)
                      .++..|+..+         .|+..++..+--.-     .++||.+++.
T Consensus       213 ~~~~~~~~~~---------~rd~~~~if~~~~~if~~~~~~~a~~~~~  251 (403)
T PRK04195        213 RITLDDVKTG---------ERDREESIFEALDAVFKSRNYDQALEASY  251 (403)
T ss_pred             CCCHHHHHHH---------CCCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             7756666641---------35231438999999975698999999885


No 47 
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.76  E-value=1.9e-17  Score=145.21  Aligned_cols=205  Identities=28%  Similarity=0.425  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             569889852889999---99999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r  145 VTFKDVAGVDEAKED---LQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       145 v~f~dv~g~~~~k~~---~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      .+|+||.|++++..+   |+.+++   .        .++| -++||||||||||-||+.+|.+.+.+|+.++++.     
T Consensus        10 ~~lde~vGQ~hllg~~~~L~~~i~---~--------~~~~-s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~-----   72 (417)
T PRK13342         10 KTLDEVVGQEHLLGPGKPLRRMIE---A--------GRLS-SMILWGPPGTGKTTLARIIAGATDAEFEALSAVT-----   72 (417)
T ss_pred             CCHHHHCCCHHHHCCCHHHHHHHH---C--------CCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-----
T ss_conf             988885798776089719999997---6--------9997-5998896999899999999998689889961410-----


Q ss_pred             HHCCHHHHHHHHHHHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCC
Q ss_conf             203324599999999873---780120632356414455789886268898899899853032357782999962--981
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRP  296 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~  296 (647)
                        .|-+.+|++++.|+..   ..+|+|||||+-+-+.              --+.||-.+.    +..|++||||  |-.
T Consensus        73 --~gv~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE----~g~iiLIgATTENP~  132 (417)
T PRK13342         73 --SGVKDLREVIEEAKQSRLGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTENPS  132 (417)
T ss_pred             --CCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHH----CCCEEEEEECCCCCH
T ss_conf             --38899999999988631489659999782005889--------------9999987511----265699974157922


Q ss_pred             CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHH-HHHHCCCHHHHHHHHHHHHHH-HHHHHC
Q ss_conf             00883331656423141000134788999999985488-777321102454-412037989999999998764-553202
Q gi|254780545|r  297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLAPNVILKTIA-RGTPGFSGADLRNLVNEAALM-AARRNR  373 (647)
Q Consensus       297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~~~~d~~~la-~~t~g~sgAdi~~~~~eAa~~-a~r~~~  373 (647)
                      -.|-|||+=  |- +.+.+...+.++-..||+.-+... .+..++.++.=| .....+|+-|....+|---+. ....+.
T Consensus       133 f~in~aLlS--Rc-~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~  209 (417)
T PRK13342        133 FEVNPALLS--RA-QVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGG  209 (417)
T ss_pred             HHCCHHHHH--HH-HHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             534898985--65-700205899999999999999877433788776999999999814985999999999998525899


Q ss_pred             CCCCHHHHHHHHHHCC
Q ss_conf             4210456899975013
Q gi|254780545|r  374 RLVTMQEFEDAKDKIL  389 (647)
Q Consensus       374 ~~i~~~dl~~A~~rv~  389 (647)
                      ..|+.+++.+.+.+-.
T Consensus       210 ~~i~~~~~~~~~~~~~  225 (417)
T PRK13342        210 EVITLELLEEALQRRA  225 (417)
T ss_pred             CCCCHHHHHHHHHHCC
T ss_conf             7348999999984410


No 48 
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.71  E-value=2e-16  Score=137.84  Aligned_cols=191  Identities=25%  Similarity=0.350  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
                      .+|+|+.|+++++..++-.++-.+..      +..+ --+|||||||||||.||+.+|.+.+++|..+||+.+-      
T Consensus        21 ~~l~e~vGQehl~~~l~~~i~a~~~~------~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~------   87 (234)
T pfam05496        21 RRLDEYIGQEKVKENLKIFIEAAKKR------GEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------   87 (234)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHHHHHC------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH------
T ss_conf             97666069499999999999988742------7776-6278878999988899999998408753761426664------


Q ss_pred             CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----------------CCCCEE
Q ss_conf             3245999999998737801206323564144557898862688988998998530323----------------577829
Q gi|254780545|r  225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE----------------SSEGVI  288 (647)
Q Consensus       225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~----------------~~~~v~  288 (647)
                      .+.-++.++...+  ...|+|||||..+-+..              -+.||--|..+.                .+....
T Consensus        88 ~~~di~~~l~~~~--~~~ILFIDEIHr~nK~q--------------qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~Ft  151 (234)
T pfam05496        88 KPGDLAAILTNLE--PGDVLFIDEIHRLNRAV--------------EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFT  151 (234)
T ss_pred             HHHHHHHHHHHCC--CCCEEEEECHHHCCHHH--------------HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEE
T ss_conf             3899999998458--99889996654358768--------------8744553346169999636766324652689759


Q ss_pred             EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             999629810088333165642314100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r  289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL  366 (647)
Q Consensus       289 vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~  366 (647)
                      +||||..+..|-++|+=  ||--...+..-+.++-..|++.-++.  ..++++ -++.||+...| .+.+--|++..+.-
T Consensus       152 LIgATTe~~~l~~pl~s--R~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~e-al~~IA~~s~G-d~R~ALnlLe~v~d  227 (234)
T pfam05496       152 LVGATTRAGLLTSPLRD--RFGIVLRLEFYSVEELEEIVKRSARILGVEIDEE-GAAEIARRSRG-TPRIANRLLRRVRD  227 (234)
T ss_pred             EEEECCCCCCCCHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf             98521566647777997--6211244246899999999999999839995999-99999997799-89999899999999


Q ss_pred             HH
Q ss_conf             45
Q gi|254780545|r  367 MA  368 (647)
Q Consensus       367 ~a  368 (647)
                      +|
T Consensus       228 ~a  229 (234)
T pfam05496       228 FA  229 (234)
T ss_pred             HH
T ss_conf             99


No 49 
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71  E-value=1e-15  Score=132.79  Aligned_cols=225  Identities=24%  Similarity=0.333  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
                      .+|+|..|++++|+.|+-.++-=|       .-..+.--+|||||||+|||-||.-+|+|.+++|-.+||+.+..     
T Consensus        22 ~~l~efiGQ~~i~~~L~v~i~Aak-------~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek-----   89 (328)
T PRK00080         22 KSLDEFIGQEKVKENLKIFIEAAK-------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-----   89 (328)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-----
T ss_conf             857663595999999999999999-------64999880576588998899999999998688815624500167-----


Q ss_pred             CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCC----------------CCE
Q ss_conf             3245999999998737801206323564144557898862688988998-99853032357----------------782
Q gi|254780545|r  225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFESS----------------EGV  287 (647)
Q Consensus       225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~~----------------~~v  287 (647)
                       +.-+..++...+.  .-|+|||||..+-+               ++.+ |..-|+-|.-+                ...
T Consensus        90 -~~DL~~iLt~l~~--~dvLFIDEIHRl~~---------------~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF  151 (328)
T PRK00080         90 -AGDLAALLTNLEE--GDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF  151 (328)
T ss_pred             -HHHHHHHHHHCCC--CCEEEEHHHHHCCH---------------HHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf             -4789999960887--87676506532488---------------89988579877523457864786532455589983


Q ss_pred             EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999962981008833316564231410001347889999999854--887773211024544120379899999999987
Q gi|254780545|r  288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAA  365 (647)
Q Consensus       288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa  365 (647)
                      -+||||-|...|-..|.-  ||-.+..++.=+.++-.+|++...+  +.+++++ -...+|+++-| ++.--.++++...
T Consensus       152 TLIGATTr~g~Ls~PLrd--RFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~-~~~eIA~rSRG-TPRiAnrLLrRvr  227 (328)
T PRK00080        152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGIEIDEE-GALEIARRSRG-TPRIANRLLRRVR  227 (328)
T ss_pred             EEEECCCCCCCCCHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf             474013676657767897--5793366345899999999999999839887899-99999986389-8399999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             645532024210456899975013686556766686677899
Q gi|254780545|r  366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT  407 (647)
Q Consensus       366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v  407 (647)
                      -.|.-++...|+.+....|++..-.    ...-+++.+++..
T Consensus       228 Dfa~v~~~~~I~~~~~~~aL~~l~I----D~~GLd~~Dr~~L  265 (328)
T PRK00080        228 DFAQVKGDGIITREIADKALDMLGV----DELGLDEMDRKYL  265 (328)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHCCC----CCCCCCHHHHHHH
T ss_conf             9999837996599999999995698----6348998899999


No 50 
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68  E-value=3.1e-16  Score=136.46  Aligned_cols=201  Identities=23%  Similarity=0.322  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
                      .+++||.|+++...+=.-+-..++.         .-..-++||||||||||-||+.||+..+.+|+.+|+..       .
T Consensus        25 ~~Lde~vGQ~hllg~g~~Lrr~i~~---------~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~-------s   88 (726)
T PRK13341         25 RTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------A   88 (726)
T ss_pred             CCHHHHCCCHHHCCCCCHHHHHHHC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-------C
T ss_conf             9877735957542898289999976---------99982788897999999999999887488679985620-------3


Q ss_pred             CHHHHHHHHHHHHHH-----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCC
Q ss_conf             324599999999873-----780120632356414455789886268898899899853032357782999962--9810
Q gi|254780545|r  225 GASRVRDMFEQAKNN-----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPD  297 (647)
Q Consensus       225 g~~~vr~lf~~a~~~-----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~  297 (647)
                      |-+.||++++.|+..     ...|+|||||.-+-+..              -..||-.+    .+..|++||||  |=--
T Consensus        89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~Q--------------QD~LLp~v----E~G~i~LIGATTENP~F  150 (726)
T PRK13341         89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQ--------------QDALLPWV----ENGTVTLIGATTENPYF  150 (726)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHH--------------HHHHHHHH----CCCEEEEEEECCCCCCE
T ss_conf             7799999999999998745996599986254258878--------------99878886----06838999704789743


Q ss_pred             CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC---------CCCCCCCHHHHHHHHHCCCHHHHHHHHH--HHHH
Q ss_conf             0883331656423141000134788999999985488---------7773211024544120379899999999--9876
Q gi|254780545|r  298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV---------PLAPNVILKTIARGTPGFSGADLRNLVN--EAAL  366 (647)
Q Consensus       298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~---------~~~~~~d~~~la~~t~g~sgAdi~~~~~--eAa~  366 (647)
                      .+-+||+-  |- +.+.+...+.++-..|++.-+.+.         .++++ -++.|++    +|+-|....+|  |.+.
T Consensus       151 ~vn~ALlS--R~-~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~-al~~l~~----~s~GDaR~aLN~LElav  222 (726)
T PRK13341        151 EVNKALVS--RS-RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPE-AEKHLVD----VANGDARSLLNALELAV  222 (726)
T ss_pred             EECHHHHH--HC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHH----HCCCCHHHHHHHHHHHH
T ss_conf             64298883--23-46674389999999999999876743256678775989-9999999----75973999999999999


Q ss_pred             HHHHHH---CCCCCHHHHHHHHHH
Q ss_conf             455320---242104568999750
Q gi|254780545|r  367 MAARRN---RRLVTMQEFEDAKDK  387 (647)
Q Consensus       367 ~a~r~~---~~~i~~~dl~~A~~r  387 (647)
                      .+...+   ...|+...+++++.+
T Consensus       223 ~~~~~~~~~~~~i~~~~~~~~~~~  246 (726)
T PRK13341        223 ESTPPDEDGVIHINLAIAEESIQQ  246 (726)
T ss_pred             HHCCCCCCCCEEECHHHHHHHHHH
T ss_conf             707457688344359999999856


No 51 
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63  E-value=3.2e-15  Score=129.16  Aligned_cols=202  Identities=27%  Similarity=0.400  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
                      .+++||.|+++...+-.-+-..++         ..-.--++||||||||||-||+.+|++.+.+|..+|+..       -
T Consensus        21 ~~lde~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~   84 (436)
T COG2256          21 KSLDEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------S   84 (436)
T ss_pred             CCHHHHCCHHHHHCCCCHHHHHHH---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCC-------C
T ss_conf             778785571866189943899996---------499860577789998888999999876177669951523-------4


Q ss_pred             CHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCC
Q ss_conf             32459999999987378----0120632356414455789886268898899899853032357782999962--98100
Q gi|254780545|r  225 GASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPDV  298 (647)
Q Consensus       225 g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~~  298 (647)
                      |-+.+|++|++|++..-    .|+|||||.-+-+..       .       ..||-.|    .+..|++||||  |-.-.
T Consensus        85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------Q-------D~lLp~v----E~G~iilIGATTENPsF~  146 (436)
T COG2256          85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------Q-------DALLPHV----ENGTIILIGATTENPSFE  146 (436)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH-------H-------HHHHHHH----CCCEEEEEECCCCCCCEE
T ss_conf             679999999999998725883499872253337445-------6-------5510332----488689996267898714


Q ss_pred             CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCC-CCC-----CHHHHHHHHHCCCHHHHHHHHHH--HHHHH
Q ss_conf             883331656423141000134788999999985--488777-321-----10245441203798999999999--87645
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLA-PNV-----ILKTIARGTPGFSGADLRNLVNE--AALMA  368 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~-~~~-----d~~~la~~t~g~sgAdi~~~~~e--Aa~~a  368 (647)
                      |-|||+-  | -+.+++..-+.++-+.+++.-+  ....+. ..+     -++.+++.    |..|....+|-  -+..+
T Consensus       147 ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~----s~GD~R~aLN~LE~~~~~  219 (436)
T COG2256         147 LNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL----SNGDARRALNLLELAALS  219 (436)
T ss_pred             ECHHHHH--H-HHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
T ss_conf             0388861--1-04156516998999999999986541377765566888999999986----286199998899999986


Q ss_pred             HHHHCCCCCHHHHHHHHHHC
Q ss_conf             53202421045689997501
Q gi|254780545|r  369 ARRNRRLVTMQEFEDAKDKI  388 (647)
Q Consensus       369 ~r~~~~~i~~~dl~~A~~rv  388 (647)
                      ++.+. .+..+++.+.+.+.
T Consensus       220 ~~~~~-~~~~~~l~~~l~~~  238 (436)
T COG2256         220 AEPDE-VLILELLEEILQRR  238 (436)
T ss_pred             CCCCC-CCCHHHHHHHHHHH
T ss_conf             27775-24799999998655


No 52 
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60  E-value=4.3e-14  Score=120.96  Aligned_cols=197  Identities=24%  Similarity=0.342  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHH
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469-----9702058578864
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVE  219 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~  219 (647)
                      .+|+||.|++++++.|+..+.   +        .++|. +|||||||||||-+|+++|.+..     -.++.+++|+-. 
T Consensus        13 ~~l~di~g~~~~~~~L~~~i~---~--------~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r-   79 (318)
T PRK00440         13 RSLDEVVGQEEIVERLKSFVK---E--------KNMPH-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER-   79 (318)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC-
T ss_conf             989994196999999999998---7--------99866-9888959988999999999997698643476895164566-


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             4420332459999999987378------0120632356414455789886268898899899853032357782999962
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
                           |..-||+.....-+..|      -|++|||+|.+..              ..-|.|+--|+-+..+  +.+|-+|
T Consensus        80 -----~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~--------------~aq~aL~~~mE~~~~~--~~fil~~  138 (318)
T PRK00440         80 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQT--TRFILSC  138 (318)
T ss_pred             -----CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH--------------HHHHHHHHHHHCCCCC--CEEEEEC
T ss_conf             -----717899999999972677899738999868553225--------------5678887643105666--2588634


Q ss_pred             CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             98100883331656423141000134788999999985--4887773211024544120379899999999987645532
Q gi|254780545|r  294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
                      |.++.+-++|.=  |. ..|.+..|+.+.-...|+.-+  .+++++++ .+..++..+.    .|+...+|--  .++..
T Consensus       139 n~~~kii~~i~S--Rc-~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~-~l~~i~~~s~----gdlR~ain~L--q~~~~  208 (318)
T PRK00440        139 NYSSKIIDPIQS--RC-AVFRFSPLPKEAVIERLRYIAKNEGLEITDD-ALEAIYYVSE----GDMRKAINAL--QAAAA  208 (318)
T ss_pred             CCCCCCCCCHHH--HH-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC----CCHHHHHHHH--HHHHH
T ss_conf             883337615565--51-0111578999999999999999859998999-9999998649----9899999999--99997


Q ss_pred             HCCCCCHHHHHHHH
Q ss_conf             02421045689997
Q gi|254780545|r  372 NRRLVTMQEFEDAK  385 (647)
Q Consensus       372 ~~~~i~~~dl~~A~  385 (647)
                      ....|+.+++.+..
T Consensus       209 ~~~~it~~~v~~~~  222 (318)
T PRK00440        209 TGKEVTEEAVYKIT  222 (318)
T ss_pred             CCCCCCHHHHHHHH
T ss_conf             48987899999997


No 53 
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58  E-value=4.2e-14  Score=121.06  Aligned_cols=145  Identities=28%  Similarity=0.357  Sum_probs=97.5

Q ss_pred             CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHH--HHHHHCCC-CCCEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             00011242256988-9852889999999998-7433567--66420123-331100378742588899997424699702
Q gi|254780545|r  136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIVD-FLCDPQK--FKRLGGRI-PHGVLLVGPPGTGKTLLARAVAGEANVPFF  210 (647)
Q Consensus       136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v~-~l~~~~~--~~~~g~~~-p~g~ll~GppGtGKTlla~a~a~e~~~~f~  210 (647)
                      +.-.|.+..-..|. |.|+++||.-|.-.|. ..|.-..  -..-...+ +..|||.||.|||||+||+.+|.-.+|||.
T Consensus        59 ~lp~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~  138 (411)
T PRK05342         59 ELPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFA  138 (411)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             69997999998621402848888999999999999986021335665213453899899997788999999998699989


Q ss_pred             CCCHHHHHH-HHHHCC-HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf             058578864-442033-2459999999987----3780120632356414455789886268-898899899853032
Q gi|254780545|r  211 TISGSDFVE-LFVGVG-ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF  281 (647)
Q Consensus       211 ~~~~s~~~~-~~~g~g-~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~  281 (647)
                      -+.++.|-| -|||.- ++-+++|.+.|.-    ..--||||||||-|+++.+..+ .+.|- .|-+-..||--|.|-
T Consensus       139 iaDAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s-~trDVSgEGVQqaLLkiiEGt  215 (411)
T PRK05342        139 IADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGT  215 (411)
T ss_pred             EEEECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHCCC
T ss_conf             98612001267456079999999999828889988368288850234542478888-877765124899999987587


No 54 
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.57  E-value=1.5e-13  Score=117.08  Aligned_cols=95  Identities=31%  Similarity=0.474  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             11242256988-9852889999999998743356766420-----12333110037874258889999742469970205
Q gi|254780545|r  139 SGNVGSVTFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLG-----GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g-----~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      +|.+..-..|. |.|+++||..+.=.+   .|..+-+.+-     --.|+.|||.||.|||||++||-+|.=+++||+.+
T Consensus         5 tP~eIv~~LD~yIIGQ~~AKkavAVAl---rNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv   81 (442)
T PRK05201          5 TPREIVSELDKYIIGQDDAKRAVAIAL---RNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (442)
T ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             989999985360108277667877788---77787531662212334643168878888667899999999848985875


Q ss_pred             CHHHHHH-HHHHC-CHHHHHHHHHHH
Q ss_conf             8578864-44203-324599999999
Q gi|254780545|r  213 SGSDFVE-LFVGV-GASRVRDMFEQA  236 (647)
Q Consensus       213 ~~s~~~~-~~~g~-g~~~vr~lf~~a  236 (647)
                      .++.|-| -|||. =++-||+|.+.|
T Consensus        82 eATk~TEvGYvGrDVEsiIrdLv~~a  107 (442)
T PRK05201         82 EATKFTEVGYVGRDVESIIRDLVEIA  107 (442)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             21310003435643788999999999


No 55 
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55  E-value=2.6e-13  Score=115.27  Aligned_cols=219  Identities=25%  Similarity=0.317  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHH-------
Q ss_conf             898528899999999987433567664201233311003787425888999974246-----99702058578-------
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSD-------  216 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~-------  216 (647)
                      .+.|=|+   |++++..+|+..-     -...|..+++|||||||||..+|.+..+.     ++.|+++.+..       
T Consensus        31 ~l~~Re~---Ei~~l~~~l~~~l-----~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i  102 (394)
T PRK00411         31 NLPHREE---QIEELAFALRPAL-----RGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAI  102 (394)
T ss_pred             CCCCHHH---HHHHHHHHHHHHH-----CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf             8988599---9999999999997-----5999984799889999899999999999997468965999969668989999


Q ss_pred             HHHHH---HHCCH-H---HHHHHHHHHH-----HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             86444---20332-4---5999999998-----73780120632356414455789886268898899899853032357
Q gi|254780545|r  217 FVELF---VGVGA-S---RVRDMFEQAK-----NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS  284 (647)
Q Consensus       217 ~~~~~---~g~g~-~---~vr~lf~~a~-----~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~  284 (647)
                      |.+.+   .|... .   ...++|+...     ...++||.+||||.+..+.+.          .+|-+|+-.-+. ..+
T Consensus       103 ~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~----------~vLY~L~r~~~~-~~~  171 (394)
T PRK00411        103 LSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGN----------DVLYSLLRAHEE-YPG  171 (394)
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC----------HHHHHHHHCCCC-CCC
T ss_conf             999999956998987787899999999998616697589999655402036650----------899999854022-688


Q ss_pred             CCEEEEEECCCC---CCCCHHHCCCCCC-CCEEEECHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             782999962981---0088333165642-3141000134788999999985488----7773211024544120379899
Q gi|254780545|r  285 EGVILIAATNRP---DVLDAALLRPGRF-DRQITVPNPDIVGREHILMVHSRNV----PLAPNVILKTIARGTPGFSGAD  356 (647)
Q Consensus       285 ~~v~vi~aTn~~---~~lD~al~RpgRf-d~~i~~~~P~~~~r~~i~~~~~~~~----~~~~~~d~~~la~~t~g~sgAd  356 (647)
                      ..+.+||-+|..   +.|||.+.-  || ...|.+++=+...-.+||+..++.-    -++++ -++.+|+.+.--+| |
T Consensus       172 ~~~~vI~IsN~~~~~~~Ldprv~S--~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~-~i~~~A~~~a~~~G-D  247 (394)
T PRK00411        172 ARIGVIGISSDLTFLYILDPRVKS--VFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDE-VLELIADLTGREHG-D  247 (394)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHCCC-C
T ss_conf             738999997687177664077750--2786289858999899999999999841455678978-99999999855047-5


Q ss_pred             HH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             99---99999876455320242104568999750136
Q gi|254780545|r  357 LR---NLVNEAALMAARRNRRLVTMQEFEDAKDKILM  390 (647)
Q Consensus       357 i~---~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~  390 (647)
                      ..   .+|+.|+.+|-+++++.|+.+|+..|.+++..
T Consensus       248 aR~Aldllr~A~e~Ae~~g~~~Vt~~hV~~A~~~~~~  284 (394)
T PRK00411        248 ARVAIDLLRRAGEIAEREGSRKVTEEDVRKAYEKSEP  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             8999999999999999718996589999999998600


No 56 
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.53  E-value=1.4e-13  Score=117.29  Aligned_cols=183  Identities=25%  Similarity=0.345  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE  219 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~  219 (647)
                      .+|+||.|++++++.|+..+.   .        .++|. +|||||||||||.+|+|+|.+...     ++....+|++.+
T Consensus        12 ~~~~dvvGq~~i~~~L~~~~~---~--------~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~   79 (337)
T PRK12402         12 SLFEDILGQESVVDHLSALAA---S--------GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFD   79 (337)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf             979980397999999999997---7--------99876-98889298489999999999967997567833311653113


Q ss_pred             --------------HHHHCCH--HHHHHHHHH----HHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             --------------4420332--459999999----987378-----012063235641445578988626889889989
Q gi|254780545|r  220 --------------LFVGVGA--SRVRDMFEQ----AKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL  274 (647)
Q Consensus       220 --------------~~~g~g~--~~vr~lf~~----a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l  274 (647)
                                    .+.+.+.  ..+++.++.    .-...|     .|++|||.|.+-+              ..-|.|
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~--------------~Aq~aL  145 (337)
T PRK12402         80 QGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE--------------DAQQAL  145 (337)
T ss_pred             CCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--------------HHHHHH
T ss_conf             564001016642344201533277378999999999861488778804999707131799--------------999999


Q ss_pred             HHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCC
Q ss_conf             9853032357782999962981008833316564231410001347889999999854--88777321102454412037
Q gi|254780545|r  275 LVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGF  352 (647)
Q Consensus       275 l~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~  352 (647)
                      |--|.  +....+.+|-+||+++.+=|+|+=  |- ..+.+..|+.+.-...|+.-++  +..++++ .++.||+.+.| 
T Consensus       146 lk~lE--e~~~~~~fIl~t~~~~~ii~tI~S--RC-~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~-~l~~ia~~s~G-  218 (337)
T PRK12402        146 RRIME--RYSETCRFIFSTTQPSKLIPPIRS--RC-LPLFFRPVPDDEIRSVLESIAAAEGVEISDD-GLDLIAYYAEG-  218 (337)
T ss_pred             HHHHH--CCCCCEEEEEECCCCCCCCHHHHH--HC-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-
T ss_conf             98874--088766998723864447524776--24-4543589899999999999999849998999-99999998699-


Q ss_pred             CHHHHHHHHHH
Q ss_conf             98999999999
Q gi|254780545|r  353 SGADLRNLVNE  363 (647)
Q Consensus       353 sgAdi~~~~~e  363 (647)
                         |+...+|-
T Consensus       219 ---dlR~ain~  226 (337)
T PRK12402        219 ---DLRKAILT  226 (337)
T ss_pred             ---CHHHHHHH
T ss_conf             ---89999999


No 57 
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53  E-value=4.4e-13  Score=113.66  Aligned_cols=227  Identities=22%  Similarity=0.286  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             42256988985288999999999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      .|+ +|+|..|++++|+.|+-.+.-       .+.-...+-.+|||||||.|||-||.-+|+|.|+++-.+||+-+.-  
T Consensus        21 RP~-~l~efiGQ~~vk~~L~ifI~A-------Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--   90 (332)
T COG2255          21 RPK-TLDEFIGQEKVKEQLQIFIKA-------AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--   90 (332)
T ss_pred             CCC-CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC--
T ss_conf             865-488851839999999999999-------9844987674786479987688899999998567737636620157--


Q ss_pred             HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------CC--------
Q ss_conf             20332459999999987378012063235641445578988626889889989985303235--------77--------
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--------SE--------  285 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--------~~--------  285 (647)
                          +.-+-.++..-+  .--|+|||||..+++.=              ---|.--|+-|.-        +.        
T Consensus        91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v--------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp  150 (332)
T COG2255          91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV--------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP  150 (332)
T ss_pred             ----HHHHHHHHHCCC--CCCEEEEEHHHHCCHHH--------------HHHHHHHHHHEEEEEEECCCCCCCEEECCCC
T ss_conf             ----265999986398--67767772553147428--------------9896467531057789724875534763799


Q ss_pred             CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             82999962981008833316564231410001347889999999854887--7732110245441203798999999999
Q gi|254780545|r  286 GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNE  363 (647)
Q Consensus       286 ~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~e  363 (647)
                      ..-.||||-|.-+|-.-|.-  ||--...+..=+.++-.+|++...+.+.  ++++ -...+|+++-|- +.=-.+|++.
T Consensus       151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRGT-PRIAnRLLrR  226 (332)
T COG2255         151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRGT-PRIANRLLRR  226 (332)
T ss_pred             CEEEEEECCCCCCCCCHHHH--HCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCCC-CHHHHHHHHH
T ss_conf             81375101346645633688--6286045405888999999998888738776857-999999863699-3899999999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             8764553202421045689997501368655676668667789
Q gi|254780545|r  364 AALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKI  406 (647)
Q Consensus       364 Aa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~  406 (647)
                      -.=.|.-++...|+..--.+|+.....-    ..-+++.+++.
T Consensus       227 VRDfa~V~~~~~I~~~ia~~aL~~L~Vd----~~GLd~~D~k~  265 (332)
T COG2255         227 VRDFAQVKGDGDIDRDIADKALKMLDVD----ELGLDEIDRKY  265 (332)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCC----CCCCCHHHHHH
T ss_conf             9999998168820489999999872964----02556899999


No 58 
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.53  E-value=1.1e-14  Score=125.39  Aligned_cols=207  Identities=26%  Similarity=0.410  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCC-CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH---
Q ss_conf             988985288999999999874--------335676642012-33311003787425888999974246997020585---
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFL--------CDPQKFKRLGGR-IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG---  214 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l--------~~~~~~~~~g~~-~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~---  214 (647)
                      =.|=-|+++||+.+.|.+.-.        |.|++-..+.++ +   +.||||||.|||-||+.||.-.+-.||-+|-   
T Consensus       410 D~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqI---lClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~  486 (941)
T TIGR00763       410 DEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQI---LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGV  486 (941)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE---EEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             1678888773034135888989998764036444778888767---8720726954222789999996880499952672


Q ss_pred             ---HHHH---HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH--C-CCCCCCCCCCHHHHHHHHHHHHHHCC-----
Q ss_conf             ---7886---44420332459999999987378012063235641--4-45578988626889889989985303-----
Q gi|254780545|r  215 ---SDFV---ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG--R-HRGIGLGGGNDEREQTLNQLLVEMDG-----  280 (647)
Q Consensus       215 ---s~~~---~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~--~-~r~~~~~~~~~e~~~~ln~ll~~mdg-----  280 (647)
                         +|+.   .-|||-=+-|+=+-..+|+..-| ++.|||||=+|  + .||.-           =..||.-+|=     
T Consensus       487 ~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NP-l~LlDEIDK~~~~~~~~GDP-----------aSALLEvLDPEQN~~  554 (941)
T TIGR00763       487 RDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LILLDEIDKIGLKSSFRGDP-----------ASALLEVLDPEQNNA  554 (941)
T ss_pred             EEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEEEEEECCCCCCCCCH-----------HHHHHHHCCHHHCCC
T ss_conf             203112786432034672578999876041588-06862022001678865563-----------788864128643604


Q ss_pred             CCCC--------CCEE--EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CCC-CCCH--
Q ss_conf             2357--------7829--99962981008833316564231410001347889999999854887-----773-2110--
Q gi|254780545|r  281 FESS--------EGVI--LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LAP-NVIL--  342 (647)
Q Consensus       281 ~~~~--------~~v~--vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~~-~~d~--  342 (647)
                      |..+        +.|+  .||+-|+.|.+.+.||=  |.+ .|.+.==..++-..|-+.||=.+-     +++ ++++  
T Consensus       555 F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~PLLD--RME-vI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d  631 (941)
T TIGR00763       555 FSDHYLDVPFDLSKVLCYFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISD  631 (941)
T ss_pred             CCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCC--CEE-EEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECH
T ss_conf             25530023400420021000244757677722137--402-452388876789999985471367987088813221268


Q ss_pred             HHHHHHHHCCC---H-----HHHHHHHHHHHHHHHHH
Q ss_conf             24544120379---8-----99999999987645532
Q gi|254780545|r  343 KTIARGTPGFS---G-----ADLRNLVNEAALMAARR  371 (647)
Q Consensus       343 ~~la~~t~g~s---g-----Adi~~~~~eAa~~a~r~  371 (647)
                      +.|-.....|+   |     -.|+.||+-+|+.-++.
T Consensus       632 ~al~~lI~~YtREaGVRNL~r~I~~i~RK~A~~~~~~  668 (941)
T TIGR00763       632 EALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQ  668 (941)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999875132021338999999999999999871


No 59 
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53  E-value=2.4e-13  Score=115.61  Aligned_cols=218  Identities=20%  Similarity=0.326  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV-  218 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~-  218 (647)
                      -=+|--|++++|+.+.|.+...+-..   ..   -..=++|+||||+|||-|||+||...|-+|+.+|-      +++. 
T Consensus       320 Ld~dHyGL~~vKeRile~lAv~~~~~---~~---kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirG  393 (784)
T PRK10787        320 LDTDHYGLERVKDRILEYLAVQSRVN---KI---KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG  393 (784)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCC---CC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf             76543065779999999999998624---67---7877996469987724699999998589869980688788888256


Q ss_pred             --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC------
Q ss_conf             --4442033245999999998737801206323564144-5578988626889889989985303-----2357------
Q gi|254780545|r  219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS------  284 (647)
Q Consensus       219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~------  284 (647)
                        .-|+|.-+-|+=+-..+|..+-| |+.+||||-+|.. ||       |    --..||.-+|-     |..+      
T Consensus       394 HrrTYvgampGrii~~l~~a~~~nP-v~llDEiDK~~~~~~G-------d----p~salLEvLDpeQN~~F~Dhyl~~~~  461 (784)
T PRK10787        394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------D----PASALLEVLDPEQNVAFSDHYLEVDY  461 (784)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCC-------C----HHHHHHHHCCHHHCCCCCCCEEECCC
T ss_conf             4334344368389999997489885-6650035552245589-------9----88999984597655640003220464


Q ss_pred             --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC-CCCCH--HHHHHHHHCCC-
Q ss_conf             --782999962981008833316564231410001347889999999854887-----77-32110--24544120379-
Q gi|254780545|r  285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA-PNVIL--KTIARGTPGFS-  353 (647)
Q Consensus       285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~-~~~d~--~~la~~t~g~s-  353 (647)
                        +.|++||+.|..+ +.++|+-  |++ .|+++-=+.++..+|-+.|+-.+-     +. ..+++  +.+-....+|| 
T Consensus       462 DlS~v~Fi~TaN~~~-ip~pLlD--RmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr  537 (784)
T PRK10787        462 DLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR  537 (784)
T ss_pred             CHHHEEEEEECCCCC-CCHHHHH--HEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             522258997327677-8767763--121-554116767889999997453999998289965674399999998753365


Q ss_pred             --H-----HHHHHHHHHHHHHHHHHHC-C--CCCHHHHHHHH
Q ss_conf             --8-----9999999998764553202-4--21045689997
Q gi|254780545|r  354 --G-----ADLRNLVNEAALMAARRNR-R--LVTMQEFEDAK  385 (647)
Q Consensus       354 --g-----Adi~~~~~eAa~~a~r~~~-~--~i~~~dl~~A~  385 (647)
                        |     -.|+.+|+.+|..-+.... +  .|+.+++.+-+
T Consensus       538 EaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~l  579 (784)
T PRK10787        538 EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL  579 (784)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHH
T ss_conf             444251688999999999999970788785588899999982


No 60 
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52  E-value=2.2e-13  Score=115.90  Aligned_cols=204  Identities=27%  Similarity=0.393  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC-------------
Q ss_conf             6988985288999999999874335676642012333110037874258889999742469970205-------------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI-------------  212 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-------------  212 (647)
                      +|+||.|++++...|+..+.-           .++|...||+||+|||||..||++|...+|.=-..             
T Consensus        14 ~f~dvvgQ~~v~~~L~n~i~~-----------~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i   82 (541)
T PRK05563         14 TFEDVVGQEHITTTLKNQIIN-----------NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKI   82 (541)
T ss_pred             CHHHHCCCHHHHHHHHHHHHC-----------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             776624849999999999984-----------993204530387995899999999999579998889857514889998


Q ss_pred             -CHH--HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             -857--8864442--0332459999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r  213 -SGS--DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE  282 (647)
Q Consensus       213 -~~s--~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~  282 (647)
                       .|+  |.+|+=.  --|-..||++-+.. +.+|     -|+.|||.|.+-              ....|.||--+.  +
T Consensus        83 ~~g~~~Dv~Eidaas~~gvd~iR~~~~~~-~~~p~~~~~Kv~IiDEvhmls--------------~~a~nallKtlE--e  145 (541)
T PRK05563         83 NEGLLMDVIEIDAASNNGVDDIREIIENV-KYPPQEGKYKVYIMDEVHMLS--------------QGAVNAFLKTLE--E  145 (541)
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHC-EECCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHH--C
T ss_conf             56898873662444447889999999761-048767870599997723389--------------999999999985--4


Q ss_pred             CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf             5778299996298100883331-656423141000134788999999985488777321102454412037989999999
Q gi|254780545|r  283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV  361 (647)
Q Consensus       283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~  361 (647)
                      ....|+.|-||+.|+.+-+.++ |--|||.+ .++..+...|..-.- ...+...+++ -+..+|+...| |=.|--+++
T Consensus       146 Pp~~~~Filatte~~ki~~tI~SRcq~f~f~-~i~~~~i~~~L~~I~-~~E~i~~~~~-al~lIa~~s~G-smRDAlslL  221 (541)
T PRK05563        146 PPSNVIFILATTDPQKLPITILSRCQRFDFK-RIKVKDIFKRLRKIV-EEQGIFADDK-SLNLIARMSDG-AMRDALSIL  221 (541)
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHEEEEEEE-ECCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHH
T ss_conf             8777569997698442745567421357754-389999999999999-9849998789-99999974599-778899999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             998764553202421045689997
Q gi|254780545|r  362 NEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       362 ~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      .++...    +...|+.+++.+.+
T Consensus       222 dQ~is~----~~~~it~~~v~~~l  241 (541)
T PRK05563        222 DQAISM----GDGKVDYDDVVSML  241 (541)
T ss_pred             HHHHHH----CCCCCCHHHHHHHH
T ss_conf             999983----59986699999996


No 61 
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.52  E-value=2.6e-13  Score=115.27  Aligned_cols=203  Identities=31%  Similarity=0.479  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC------------
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702058------------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS------------  213 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~------------  213 (647)
                      ||+||.|++.+.+.|+-.+..           .|++..-||+||-|||||-.||-+|.-.+|+ -...            
T Consensus        12 ~F~d~~GQ~~iv~tL~NAi~~-----------~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i   79 (363)
T TIGR02397        12 TFEDVIGQEHIVKTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEI   79 (363)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH
T ss_conf             611023517999999999971-----------8966234502859976355899999986588-7877877775022776


Q ss_pred             ----HHHHHHHHHHCCHHH-----HHHHHHHHHHHCCHH-----EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             ----578864442033245-----999999998737801-----206323564144557898862688988998998530
Q gi|254780545|r  214 ----GSDFVELFVGVGASR-----VRDMFEQAKNNSPCI-----VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       214 ----~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p~i-----ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                          ..|++|+   .|||+     ||+|=+.. +.+|+.     --|||..-+=              .+.-|.||--+.
T Consensus        80 ~~g~~~DviEi---DAASN~gVD~IR~l~e~v-~y~P~~~kYKvYIIDEVHMLS--------------~~AFNALLKTLE  141 (363)
T TIGR02397        80 NSGSSLDVIEI---DAASNNGVDDIRELRENV-KYAPSKGKYKVYIIDEVHMLS--------------KSAFNALLKTLE  141 (363)
T ss_pred             HCCCCCCEEEE---CCCCCCCHHHHHHHHHHH-CCCCCCCCCCEEEEECCCCCC--------------HHHHHHHHHHHC
T ss_conf             52898666886---486568788999998730-368755443358873230286--------------568999876522


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
                        ++...|+.|=||--|+.+.+-++ |--|||.+ .|+..+...|.+=. .+-.+.+.++. -|+.||+...| |-.|=.
T Consensus       142 --EPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk-~i~~~~i~~~L~~I-~~~E~I~~e~~-AL~~IA~~a~G-S~RDAl  215 (363)
T TIGR02397       142 --EPPEHVVFILATTEPHKIPATILSRCQRFDFK-RIPLEDIVERLKKI-LDKEGIKIEDE-ALELIARAADG-SMRDAL  215 (363)
T ss_pred             --CCCCCEEEEEECCCHHHCCCCCEEECEEECCC-CCCHHHHHHHHHHH-HHHHCCCCCHH-HHHHHHHHCCC-CCCHHH
T ss_conf             --79876288873487112055402100031267-89989999999999-98708831778-99999996289-610688


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999998764553202421045689997
Q gi|254780545|r  359 NLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      +|..++....-.. ...|+.+++.+-+
T Consensus       216 sllDQ~~~~~~~~-DG~i~~~~v~~~l  241 (363)
T TIGR02397       216 SLLDQAISFGNGS-DGKITYEDVNEML  241 (363)
T ss_pred             HHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf             9999999826887-8865789999983


No 62 
>KOG2028 consensus
Probab=99.51  E-value=4.1e-13  Score=113.86  Aligned_cols=207  Identities=29%  Similarity=0.440  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---EECCCHHHHHHHH
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997---0205857886444
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP---FFTISGSDFVELF  221 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~---f~~~~~s~~~~~~  221 (647)
                      -+.+|+.|++++...---+-.+++.        .++| -++|+||||||||-||+-+|..+.-+   |+.+|+..     
T Consensus       135 ktL~dyvGQ~hlv~q~gllrs~ieq--------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-----  200 (554)
T KOG2028         135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-----  200 (554)
T ss_pred             CHHHHHCCHHHHCCCCHHHHHHHHC--------CCCC-CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC-----
T ss_conf             3687750534414832689999870--------8887-0588669987658899999860577742799974145-----


Q ss_pred             HHCCHHHHHHHHHHHHHH-----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--C
Q ss_conf             203324599999999873-----780120632356414455789886268898899899853032357782999962--9
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNN-----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--N  294 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~-----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n  294 (647)
                        .+-.-||++|++|++.     ...|+|||||.-+-+...       |       .||-.    -.+..|++||||  |
T Consensus       201 --a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-------D-------~fLP~----VE~G~I~lIGATTEN  260 (554)
T KOG2028         201 --AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-------D-------TFLPH----VENGDITLIGATTEN  260 (554)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHH-------H-------CCCCE----ECCCCEEEEECCCCC
T ss_conf             --661889999999887876524406987377655323211-------0-------03421----306706998536689


Q ss_pred             CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC----------CCCCC----CCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             81008833316564231410001347889999999854----------88777----32110245441203798999999
Q gi|254780545|r  295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR----------NVPLA----PNVILKTIARGTPGFSGADLRNL  360 (647)
Q Consensus       295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~----------~~~~~----~~~d~~~la~~t~g~sgAdi~~~  360 (647)
                      -.-.|-.||+-  |- +.+....-..+.-+.||..-..          ++|..    ++--++.+|..+.|=.-+-|..|
T Consensus       261 PSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L  337 (554)
T KOG2028         261 PSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL  337 (554)
T ss_pred             CCCCHHHHHHH--CC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             76011277873--16-0667336888999999999987632102568899983124568899999870473188887789


Q ss_pred             HHHHHHHHHHHH---CCCCCHHHHHHHHHHC
Q ss_conf             999876455320---2421045689997501
Q gi|254780545|r  361 VNEAALMAARRN---RRLVTMQEFEDAKDKI  388 (647)
Q Consensus       361 ~~eAa~~a~r~~---~~~i~~~dl~~A~~rv  388 (647)
                      ---+.+.+.|.+   +..++.+|+.+++.+-
T Consensus       338 ems~~m~~tr~g~~~~~~lSidDvke~lq~s  368 (554)
T KOG2028         338 EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS  368 (554)
T ss_pred             HHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
T ss_conf             9999988752477656400288899998531


No 63 
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50  E-value=5e-13  Score=113.25  Aligned_cols=204  Identities=27%  Similarity=0.437  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------CC-----
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699702-------05-----
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------TI-----  212 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------~~-----  212 (647)
                      .+|+||.|+++++..|+..+.           ..++|...||+||+|||||.+|+++|....++=-       ..     
T Consensus        12 ~~F~dvvGQe~i~~~L~nal~-----------~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~   80 (557)
T PRK07270         12 QTFDEMVGQEVVATTLKQAVE-----------SGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRD   80 (557)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             987671481999999999998-----------599540442108998689999999999957999899998887779999


Q ss_pred             ----CHHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             ----8578864442--0332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r  213 ----SGSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       213 ----~~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                          +.++++++-.  .-|-..||++-+.+ ..+|     -|+.|||.|.+-              ...-|.||--|.  
T Consensus        81 i~~g~~~DviEidaas~~gVd~IRei~~~~-~~~P~~~~yKV~IIDEah~Ls--------------~~A~NALLKtLE--  143 (557)
T PRK07270         81 ITNGSLEDVIEIDAASNNGVDEIRDIRDKS-TYAPSRATYKVYIIDEVHMLS--------------TGAFNALLKTLE--  143 (557)
T ss_pred             HHCCCCCCEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHH--
T ss_conf             875899974873477767889999999984-238777883899971445349--------------999998999852--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             35778299996298100883331-656423141000134788999-9999854887773211024544120379899999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREH-ILMVHSRNVPLAPNVILKTIARGTPGFSGADLRN  359 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~-i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~  359 (647)
                      +....++.|-+||.|+.|-|.++ |--|||.+ .++..|...|.. |.+  -.+...+++ -|..+|+...| +=.|--+
T Consensus       144 EPP~~~vFIL~Ttep~kIl~TI~SRCQrf~F~-~i~~~~i~~~L~~I~~--~E~i~~~~~-aL~~Ia~~a~G-~mRdAls  218 (557)
T PRK07270        144 EPTENVVFILATTELHKIPATILSRVQRFEFK-SIKTKAIREHLAWILD--KEGISFEVE-ALNLIARRAEG-GMRDALS  218 (557)
T ss_pred             CCCCCEEEEEEECCHHHCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHHHH
T ss_conf             89987699998499475928887430001088-8999999999999999--839986999-99999997799-6878999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             9999876455320242104568999
Q gi|254780545|r  360 LVNEAALMAARRNRRLVTMQEFEDA  384 (647)
Q Consensus       360 ~~~eAa~~a~r~~~~~i~~~dl~~A  384 (647)
                      ++..+.-.   .+...|+.++..+.
T Consensus       219 iLdQ~~s~---~~~~~it~~~v~~~  240 (557)
T PRK07270        219 ILDQALSL---SQDNQVTIAIAEEI  240 (557)
T ss_pred             HHHHHHHC---CCCCCCCHHHHHHH
T ss_conf             99999971---79997679999999


No 64 
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.48  E-value=4.5e-13  Score=113.61  Aligned_cols=210  Identities=23%  Similarity=0.295  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702058578864442033
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g  225 (647)
                      +|+|..|++++|+.|+=.+.-=|       .=-..+=.+|||||||-|||-||.-||+|.|+..=.+||+-+.       
T Consensus         2 ~L~eFiGQ~~vk~~L~l~I~AAk-------~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~-------   67 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAK-------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-------   67 (305)
T ss_pred             CCHHCCCCHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCC-------
T ss_conf             80110582889999999999998-------2489734166317568746789999999838932674067554-------


Q ss_pred             HHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCC--------CC--------CE
Q ss_conf             2459999999987-37801206323564144557898862688988998-9985303235--------77--------82
Q gi|254780545|r  226 ASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFES--------SE--------GV  287 (647)
Q Consensus       226 ~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~--------~~--------~v  287 (647)
                        |=.||-.---. ..-.|+|||||..+.+.               +-+ |---|+-|.=        +.        .-
T Consensus        68 --kPgDlaaiLt~L~~gDVLFIDEIHRL~p~---------------~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPF  130 (305)
T TIGR00635        68 --KPGDLAAILTNLEEGDVLFIDEIHRLSPA---------------IEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF  130 (305)
T ss_pred             --CHHHHHHHHHHCCCCCEEECCHHHHCCHH---------------HHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCC
T ss_conf             --75789999970568963101256504833---------------4531053001217877871289852576068694


Q ss_pred             EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99996298100883331656423141000134788999999985488777-32110245441203798999999999876
Q gi|254780545|r  288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAAL  366 (647)
Q Consensus       288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~  366 (647)
                      -.||||-|+-+|=.-|.=  ||--.-.+++=+.++-.+|++.+..-+.+. +.-....||+++-| |+-==.+|++.=.=
T Consensus       131 TLvGATTR~G~lt~PLrd--RFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRG-TPRIAnRLLRRVRD  207 (305)
T TIGR00635       131 TLVGATTRAGMLTSPLRD--RFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRG-TPRIANRLLRRVRD  207 (305)
T ss_pred             CCCCCCCCCCCCCCCHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf             420000347741031334--544745402689878999987533441430077899999875478-63788877676644


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf             45532024210456899975013
Q gi|254780545|r  367 MAARRNRRLVTMQEFEDAKDKIL  389 (647)
Q Consensus       367 ~a~r~~~~~i~~~dl~~A~~rv~  389 (647)
                      .|--.+...|+.+--.+|++.-.
T Consensus       208 fA~V~~~~~I~~~i~~~AL~~L~  230 (305)
T TIGR00635       208 FAQVRGQGVITRDIALKALEMLD  230 (305)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             88872678738899999988625


No 65 
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.48  E-value=9.5e-14  Score=118.49  Aligned_cols=132  Identities=33%  Similarity=0.403  Sum_probs=90.8

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHH--------------HHHHHHHHCCHHE
Q ss_conf             23331100378742588899997424699702058578864442033245999--------------9999987378012
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD--------------MFEQAKNNSPCIV  244 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~--------------lf~~a~~~~p~ii  244 (647)
                      ..-+.+||.||||||||+||+++|...+.||+.+.+.+...---..|..-+..              +|...+    +|+
T Consensus        41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il  116 (329)
T COG0714          41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL  116 (329)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCC----EEE
T ss_conf             8599778779898777999999999838981899568998888820568887664257718984687334513----389


Q ss_pred             EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC----------CCCCCCEEEEEECC-----CCCCCCHHHCCCCCC
Q ss_conf             063235641445578988626889889989985303----------23577829999629-----810088333165642
Q gi|254780545|r  245 FVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG----------FESSEGVILIAATN-----RPDVLDAALLRPGRF  309 (647)
Q Consensus       245 fiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg----------~~~~~~v~vi~aTn-----~~~~lD~al~RpgRf  309 (647)
                      |+|||+-..              ..+.|.||..|+.          +.-..+.+|||+.|     .-.-|.+|+++  ||
T Consensus       117 l~DEInra~--------------p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf  180 (329)
T COG0714         117 LLDEINRAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF  180 (329)
T ss_pred             EEECCCCCC--------------HHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHC--CC
T ss_conf             987034589--------------88999999999726897079665337998789982686765788789988881--03


Q ss_pred             CCEEEECHHHHHH-HHHHHHHH
Q ss_conf             3141000134788-99999998
Q gi|254780545|r  310 DRQITVPNPDIVG-REHILMVH  330 (647)
Q Consensus       310 d~~i~~~~P~~~~-r~~i~~~~  330 (647)
                      -..++++.|+.+. ...++...
T Consensus       181 ~~~~~v~yp~~~~e~~~i~~~~  202 (329)
T COG0714         181 LLRIYVDYPDSEEEERIILARV  202 (329)
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8877648997388999998736


No 66 
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47  E-value=9.7e-13  Score=111.18  Aligned_cols=154  Identities=26%  Similarity=0.437  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC---
Q ss_conf             698898528899999999987433567664201233--311003787425888999974246-------99702058---
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS---  213 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~---  213 (647)
                      -|.+|.|++++|.-|.=              .+--|  .|+|+.||||||||++||++++=.       ++||-+..   
T Consensus         6 Pfs~IvGQe~~K~AL~l--------------aav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~   71 (334)
T PRK13407          6 PFSAIVGQEEMKQAMVL--------------TAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED   71 (334)
T ss_pred             CHHHHCCCHHHHHHHHH--------------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCC
T ss_conf             92376493999999999--------------7727898608997899865999999999728995110367556677421


Q ss_pred             ---------------HHHHHHHHHHCCHHHHH------H-------HH---HHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf             ---------------57886444203324599------9-------99---99987378012063235641445578988
Q gi|254780545|r  214 ---------------GSDFVELFVGVGASRVR------D-------MF---EQAKNNSPCIVFVDEIDAVGRHRGIGLGG  262 (647)
Q Consensus       214 ---------------~s~~~~~~~g~g~~~vr------~-------lf---~~a~~~~p~iifiDeida~~~~r~~~~~~  262 (647)
                                     ..-|+++=.|.++.|+-      .       .|   ..|+++ --|+|+|||--+-         
T Consensus        72 ~~~~~~~~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah-~GVLylDEinll~---------  141 (334)
T PRK13407         72 CPEWAEVSSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARAN-RGYLYIDEVNLLE---------  141 (334)
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCC-CCEEEEECHHHCC---------
T ss_conf             133431145553448998767899999866447421888862698778860543402-8867872053333---------


Q ss_pred             CCHHHHHHHHHHHHHHC---------CCCC--CCCEEEEEECCCCC-CCCHHHCCCCCCCCEEEECHH-HHHHHHHHHHH
Q ss_conf             62688988998998530---------3235--77829999629810-088333165642314100013-47889999999
Q gi|254780545|r  263 GNDEREQTLNQLLVEMD---------GFES--SEGVILIAATNRPD-VLDAALLRPGRFDRQITVPNP-DIVGREHILMV  329 (647)
Q Consensus       263 ~~~e~~~~ln~ll~~md---------g~~~--~~~v~vi~aTn~~~-~lD~al~RpgRfd~~i~~~~P-~~~~r~~i~~~  329 (647)
                           +.+++.||.-|.         |.+-  ....++|||-|=.+ .|-|.|+-  ||+-++.++.| |.+.|.+|++.
T Consensus       142 -----~~vld~Ll~~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg~Lrp~lLD--Rf~l~v~v~~~~~~~~r~eiv~r  214 (334)
T PRK13407        142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVITR  214 (334)
T ss_pred             -----HHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCCCCCCCHHHHH--HHCEEEEECCCCCHHHHHHHHHH
T ss_conf             -----88999999887169579997763460366265898208887775989983--61006871487887776688999


Q ss_pred             H
Q ss_conf             8
Q gi|254780545|r  330 H  330 (647)
Q Consensus       330 ~  330 (647)
                      -
T Consensus       215 ~  215 (334)
T PRK13407        215 R  215 (334)
T ss_pred             H
T ss_conf             9


No 67 
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46  E-value=2.6e-12  Score=108.04  Aligned_cols=207  Identities=21%  Similarity=0.342  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E-----
Q ss_conf             4225698898528899999999987433567664201233311003787425888999974246997-------0-----
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F-----  209 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f-----  209 (647)
                      +|+ +|+||.|++.+++.|+..+.           -.++|.+.||+||+|+|||.+|+++|....+-       .     
T Consensus        11 RPk-~F~eIIGQe~iv~~L~nAI~-----------~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~s   78 (613)
T PRK05896         11 RPH-NFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV   78 (613)
T ss_pred             CCC-CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf             799-76552382999999999998-----------499762277558998488999999999966999999998888878


Q ss_pred             ----ECCCHHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             ----2058578864442--0332459999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r  210 ----FTISGSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM  278 (647)
Q Consensus       210 ----~~~~~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m  278 (647)
                          ..-+..+++++=.  .-|-..||++-+.+ ...|     =|+.|||.|-+-              .+.-|.||--+
T Consensus        79 C~~I~~g~h~DviEIdaasn~gIDeIReLie~~-~~~P~~gkyKV~IIDEah~Ln--------------~~AaNALLKtL  143 (613)
T PRK05896         79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNI-NYLPTTFKYKVYIIDEAHMLS--------------TSAWNALLKTL  143 (613)
T ss_pred             HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHC
T ss_conf             999856999986884065557889999999970-858757994599981622179--------------99999999853


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             03235778299996298100883331-65642314100013478899999998548877732110245441203798999
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADL  357 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi  357 (647)
                      .  ++...++.|-+|+.|+.|-|-++ |--|||.+ .++..+...|..-.- .-.++..+++ -+..+|+...| |-.|-
T Consensus       144 E--EPP~~viFIL~Ttep~KLLpTIlSRCQrf~Fk-ri~~~~I~~~L~~I~-~kE~i~ie~~-AL~~Ia~~adG-s~RDA  217 (613)
T PRK05896        144 E--EPPKHVVFIFATTEFQKIPLTIISRCQRYNFK-KLNNSELQELLKSIA-KKEKIKIEDN-AIDKIADLADG-SLRDG  217 (613)
T ss_pred             C--CCCCCCEEEEEECCHHHCCHHHHHCCCCEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf             4--89878379998288154937664035500178-899899999999999-9739987899-99999997688-48789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9999998764553202421045689997
Q gi|254780545|r  358 RNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      -+++.+....    ....|+.+|+.+-+
T Consensus       218 lslLdQ~~~~----~~~~it~~~v~~~~  241 (613)
T PRK05896        218 LSILDQLSTF----KNKKIDIEDINKTF  241 (613)
T ss_pred             HHHHHHHHHH----CCCCCCHHHHHHHH
T ss_conf             8899999983----56886299999996


No 68 
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45  E-value=5.5e-12  Score=105.70  Aligned_cols=204  Identities=27%  Similarity=0.437  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----------CCC-
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702-----------058-
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----------TIS-  213 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----------~~~-  213 (647)
                      +|+||.|++.++..|+..+.           -.|+|...||+||.|||||-+||++|....|.-=           ... 
T Consensus        16 ~F~EVIGQe~Vv~tL~nAI~-----------~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~   84 (718)
T PRK07133         16 KFDEIKGQDHIIETLKNIIK-----------SGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFN   84 (718)
T ss_pred             CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCC
T ss_conf             75442285999999999997-----------4997505862389986889999999999679999999997702143047


Q ss_pred             -HHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             -578864442--0332459999999987378-----01206323564144557898862688988998998530323577
Q gi|254780545|r  214 -GSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE  285 (647)
Q Consensus       214 -~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~  285 (647)
                       ..+++|+=.  .-|...||+|-+.++ .+|     =|..|||.+-+-              .+.-|.||--+.  ++..
T Consensus        85 ~s~DViEIDAASn~gVDdIReLie~v~-y~P~~gkYKVyIIDEvHMLS--------------~~AfNALLKtLE--EPP~  147 (718)
T PRK07133         85 NNLDIIEMDAASNNGVDEIRELRENVK-NLPQISKYKIYIIDEVHMLS--------------KSAFNALLKTLE--EPPK  147 (718)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHC--CCCC
T ss_conf             898737754556688899999999825-58877872499996620079--------------999999998502--7987


Q ss_pred             CEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             8299996298100883331-656423141000134788999999985488777321102454412037989999999998
Q gi|254780545|r  286 GVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEA  364 (647)
Q Consensus       286 ~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eA  364 (647)
                      .|+.|-||..|+.|.+.++ |.-|||.+ .++..+...|..-+- .-.++..+++ -+..+|+...| |-.|--.++.++
T Consensus       148 hvvFILaTTep~KIP~TIlSRCQrFdFk-rI~~~~I~~~L~~I~-~kE~I~~e~e-AL~lIA~~a~G-SmRDAlSlLDQv  223 (718)
T PRK07133        148 HVIFILATTDVQKIPLTILSRVQRFNFR-RISEDVIVHQLENIL-EKEKIKYEKN-ALKLIASLASG-SLRDALSIADQV  223 (718)
T ss_pred             CCEEEEEECCHHHCCHHHHHCCEEEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf             8279997088254848774122033588-899999999999999-9859977899-99999997688-488898799999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHH
Q ss_conf             764553202421045689997
Q gi|254780545|r  365 ALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       365 a~~a~r~~~~~i~~~dl~~A~  385 (647)
                      ...+    ...||..++.+.+
T Consensus       224 ~~f~----ng~it~k~v~~~~  240 (718)
T PRK07133        224 SIFG----NGNITLKNVNELF  240 (718)
T ss_pred             HHHC----CCCCCHHHHHHHH
T ss_conf             9854----8987299999996


No 69 
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.44  E-value=5.3e-13  Score=113.06  Aligned_cols=130  Identities=35%  Similarity=0.458  Sum_probs=95.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCC---EECCCHHHHHHHH--------------HHCCHHHHHHHHHHHHHHCCHH
Q ss_conf             3311003787425888999974246997---0205857886444--------------2033245999999998737801
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVP---FFTISGSDFVELF--------------VGVGASRVRDMFEQAKNNSPCI  243 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~---f~~~~~s~~~~~~--------------~g~g~~~vr~lf~~a~~~~p~i  243 (647)
                      +..++++||||||||.+++++|.....+   ++.++++...+.+              ...+...++.+++.|++..|+|
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV   81 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             97899999997029999999998726689968998759989888987653000112210519999999999998449989


Q ss_pred             EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHH
Q ss_conf             2063235641445578988626889889989985303235778299996298100883331656423141000134
Q gi|254780545|r  244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD  319 (647)
Q Consensus       244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~  319 (647)
                      |||||++.+........        ....................+|+++|.....+++++|+ |||.++.+..++
T Consensus        82 iiiDei~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~-~~~~~~~~~~~~  148 (148)
T smart00382       82 LILDEITSLLDAEQEAL--------LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL  148 (148)
T ss_pred             EEEECCHHHCCCCCHHH--------HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCC-CCCEEEEEECCC
T ss_conf             99827502147620799--------99999999851765789989999569952249877074-478799982879


No 70 
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44  E-value=7.8e-12  Score=104.63  Aligned_cols=204  Identities=26%  Similarity=0.426  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE----------------
Q ss_conf             6988985288999999999874335676642012333110037874258889999742469970----------------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF----------------  209 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f----------------  209 (647)
                      +|+||.|++.++..|+..+.           ..++|...||+||+|||||.+|+++|....+.=                
T Consensus        12 ~F~evIGQe~iv~~L~nAi~-----------~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i   80 (523)
T PRK08451         12 HFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAA   80 (523)
T ss_pred             CHHHCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             65440494999999999998-----------5996715875789986889999999999759999998988878889998


Q ss_pred             ECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             20585788644420--332459999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r  210 FTISGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE  282 (647)
Q Consensus       210 ~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~  282 (647)
                      ..-+.+|++|+=.+  -|-..||++-+.+. .+|     =|+.|||.|.+-              .+.-|.||--+.  +
T Consensus        81 ~~g~hpDViEiDaasn~gID~IReLie~~~-~~P~~gryKV~IIDEah~Lt--------------~~A~NALLKTLE--E  143 (523)
T PRK08451         81 LEGRHIDIIEMDAASNRGIDDIRNLIEQTK-YKPSMARFKIFIIDEVHMLT--------------KEAFNALLKTLE--E  143 (523)
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHCC--C
T ss_conf             648999855105533368999999999723-58867972799982603048--------------999999999703--8


Q ss_pred             CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf             5778299996298100883331-656423141000134788999999985488777321102454412037989999999
Q gi|254780545|r  283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV  361 (647)
Q Consensus       283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~  361 (647)
                      ....|+.|-+|+.|+.|-+-++ |--||+.+ .++..+...|..-+- .-.++..+++ -+..+|+...| |-.|-..++
T Consensus       144 PP~~vvFILaTTep~KLp~TIlSRCQ~f~Fk-~I~~~~I~~~L~~I~-~~E~i~~e~~-AL~~IA~~a~G-slRDalslL  219 (523)
T PRK08451        144 PPSYVKFILATTDPLKLPATILSRTQHFRFK-QIPQNSIISHLKTIL-NKEGVSYEPE-ALEILARSGSG-SLRDTLTLL  219 (523)
T ss_pred             CCCCCEEEEECCCHHHCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHH
T ss_conf             9878379997599476848887420311033-799999999999999-9839987999-99999997789-486898799


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             998764553202421045689997
Q gi|254780545|r  362 NEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       362 ~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      .+|..+.    ...|+.+++.+-+
T Consensus       220 dQ~i~~~----~~~i~~~~v~~~l  239 (523)
T PRK08451        220 DQAIIFC----KNAITESKVADML  239 (523)
T ss_pred             HHHHHHC----CCCCCHHHHHHHH
T ss_conf             9999847----9987799999985


No 71 
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.44  E-value=1.7e-12  Score=109.35  Aligned_cols=164  Identities=30%  Similarity=0.449  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH---
Q ss_conf             8898528899999999987433567664201233311003787425888999974246997020585------7886---
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV---  218 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~---  218 (647)
                      +|--|++++|+.+.|...-.   .+-.++.+.   =+.|+||||+|||-|++.||...+-+|+-+|-      +++.   
T Consensus       323 ~dHYGLekVKeRIlEyLAV~---~l~~~~kGp---ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR  396 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQ---KLTKKLKGP---ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR  396 (782)
T ss_pred             CCCCCCHHHHHHHHHHHHHH---HHHCCCCCC---EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
T ss_conf             35567116899999999999---861467885---799978998870118999999958977999547654277753553


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC--------
Q ss_conf             4442033245999999998737801206323564144-5578988626889889989985303-----2357--------
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS--------  284 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~--------  284 (647)
                      .-|+|.=+-||=+-..+|+..-| ++.+||||-++.. ||.           --..||.-+|-     |..+        
T Consensus       397 RTYIGaMPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-----------PaSALLEVLDPEQN~~F~DhYLev~yDL  464 (782)
T COG0466         397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-----------PASALLEVLDPEQNNTFSDHYLEVPYDL  464 (782)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCC-EEEEECHHHCCCCCCCC-----------HHHHHHHHCCHHHCCCHHHCCCCCCCCH
T ss_conf             12335687289999998677687-47864033316777788-----------6888886269765676122201676644


Q ss_pred             CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             782999962981008833316564231410001347889999999854
Q gi|254780545|r  285 EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       285 ~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                      +.|++||+.|..+.+..+||-  |.+ .|.+.==...+..+|-+.||=
T Consensus       465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li  509 (782)
T COG0466         465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI  509 (782)
T ss_pred             HHEEEEEECCCCCCCCHHHHC--CEE-EEEECCCCHHHHHHHHHHHCC
T ss_conf             325888603751329867843--030-564268886999999998445


No 72 
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43  E-value=1.4e-12  Score=110.00  Aligned_cols=205  Identities=28%  Similarity=0.424  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE--------------
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699702--------------
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF--------------  210 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~--------------  210 (647)
                      .+|+||.|+++++..|+..+.           ..++|...||+||+|||||.+|+++|...+|.--              
T Consensus        13 ~~F~dvvGQ~~v~~~L~nai~-----------~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~   81 (563)
T PRK06674         13 QKFEDVVGQEHVTKTLQNALL-----------QEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLG   81 (563)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             976552480999999999998-----------499650343128998689999999999857999999887766878999


Q ss_pred             --CCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             --0585788644420--332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r  211 --TISGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       211 --~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                        .-+.+|++|+=..  -|-..||++-+.++ .+|     -|+.|||.|-+-              .+.-|.||--+.  
T Consensus        82 i~~g~~~DviEiDaasn~gVd~IR~i~~~v~-~~P~~~~yKV~IIDeah~Lt--------------~~A~NALLKtLE--  144 (563)
T PRK06674         82 ITNGSISDVLEIDAASNNGVDEIRDIRDKVK-FAPSAVEYKVYIIDEVHMLS--------------IGAFNALLKTLE--  144 (563)
T ss_pred             HHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHH--
T ss_conf             8558998779852555578799999999826-48867873799985456379--------------999999999863--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             35778299996298100883331-65642314100013478899999998548877732110245441203798999999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL  360 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~  360 (647)
                      +....|+.|-+|+.|+.|-|.++ |--|||.+ .++.-+...|..-+- .-.++..+++ -+..+|+...| |=.|--++
T Consensus       145 EPP~~viFILaTtep~ki~~TI~SRCQrf~F~-ri~~~~i~~rL~~I~-~~E~i~~~~~-aL~~Ia~~a~G-smRDAlsi  220 (563)
T PRK06674        145 EPPGHVIFILATTEPHKIPPTIISRCQRFDFR-RISVNDIVERLSTVV-TNEGTQVEDE-ALQIIARAADG-GMRDALSL  220 (563)
T ss_pred             CCCCCEEEEEECCCHHHCCHHHHHHHEEEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
T ss_conf             88756499996599475847887331031278-899999999999999-9849998788-99999997699-78899999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9998764553202421045689997
Q gi|254780545|r  361 VNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       361 ~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      +.++.-.    +...|+.+|..+.+
T Consensus       221 LdQ~~s~----~~~~i~~~~v~~~l  241 (563)
T PRK06674        221 LDQAISF----SDERVTTEDVLAVT  241 (563)
T ss_pred             HHHHHHH----CCCCCCHHHHHHHH
T ss_conf             9999971----59976899999986


No 73 
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43  E-value=4.5e-12  Score=106.34  Aligned_cols=221  Identities=24%  Similarity=0.369  Sum_probs=141.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC--
Q ss_conf             000011242256988985288999999999874335676642012333110037874258889999742469970205--
Q gi|254780545|r  135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI--  212 (647)
Q Consensus       135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~--  212 (647)
                      |+.|.|.    +|+|+.|++.+...|+..+.           ..++|...||+||+|||||-.||.+|...+|.-...  
T Consensus        12 a~KyRP~----~f~~liGQ~~~~~~l~n~i~-----------~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~   76 (507)
T PRK06645         12 ARKYRPS----NFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN   76 (507)
T ss_pred             EECCCCC----CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             3200799----76562393999999999997-----------39966347745879978899999999996799988889


Q ss_pred             -------CHH-----------HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             -------857-----------8864442--0332459999999987378-----01206323564144557898862688
Q gi|254780545|r  213 -------SGS-----------DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDER  267 (647)
Q Consensus       213 -------~~s-----------~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~  267 (647)
                             .+.           +++|+=.  --|-..||++-+.++ .+|     =|..|||.+-+-              
T Consensus        77 ~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~-~~p~~~~~kv~iidE~hmls--------------  141 (507)
T PRK06645         77 TTIKTCEKCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAE-YKPLQGKHKIFIIDEVHMLS--------------  141 (507)
T ss_pred             CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCEEEEEECCHHHCC--------------
T ss_conf             988888887678998658999859963788888899999986355-17876743589952142248--------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHH-HHHHHHCCCCCCCCCCHHHH
Q ss_conf             9889989985303235778299996298100883331-656423141000134788999-99998548877732110245
Q gi|254780545|r  268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREH-ILMVHSRNVPLAPNVILKTI  345 (647)
Q Consensus       268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~-i~~~~~~~~~~~~~~d~~~l  345 (647)
                      .+.-|.||--|+  +....|+.|-||+.|+.+.+.++ |--|||.+ .++..+...|.. |.+  -.+...+++ -+..+
T Consensus       142 ~~a~nallktlE--epp~~~~Fi~atte~~kip~ti~srcq~f~~~-~i~~~~i~~~l~~i~~--~E~~~~~~~-al~~i  215 (507)
T PRK06645        142 KGAFNALLKTLE--EPPPHIIFIFATTEVQKIPATIISRCQRYDLR-RLSFEEIFKLLEYITK--QENLKADIE-ALRII  215 (507)
T ss_pred             HHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHCEEEEEE-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHH
T ss_conf             999999999742--78644389997485364837888543278754-5997999999999999--768777789-99999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             44120379899999999987645532024210456899975013686556766
Q gi|254780545|r  346 ARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTA  398 (647)
Q Consensus       346 a~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~  398 (647)
                      |+...| |=.|--+++.+|..+.. .+...|+.+++.+     |.|..-++..
T Consensus       216 a~~a~G-s~RDalslldqai~~~~-~~~~~I~~~~V~~-----MLGl~Drs~l  261 (507)
T PRK06645        216 AYKSEG-SARDAVSILDQAASMSA-KSDNIISPQVINQ-----MLGLVDLSVI  261 (507)
T ss_pred             HHHCCC-CHHHHHHHHHHHHHHHC-CCCCCCCHHHHHH-----HHCCCCHHHH
T ss_conf             985599-86789999999999754-8987026999999-----8389985679


No 74 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43  E-value=1.3e-12  Score=110.28  Aligned_cols=159  Identities=24%  Similarity=0.390  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC----------CCCCEECCCHH
Q ss_conf             69889852889999999998743356766420123331100378742588899997424----------69970205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE----------ANVPFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e----------~~~~f~~~~~s  215 (647)
                      +.+-|.|-+   +|++.+++.|-..         --...+|.|.||+|||-++..+|-.          .++-.++.+-+
T Consensus       171 klDpviGRd---~Ei~r~i~IL~Rr---------~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg  238 (852)
T TIGR03346       171 KLDPVIGRD---EEIRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG  238 (852)
T ss_pred             CCCCCCCCH---HHHHHHHHHHHHH---------CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHH
T ss_conf             999773836---9999999999873---------2489721279998799999999999866999978851851275288


Q ss_pred             HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r  216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                      .++  ..|.|+=+.|++.+.+..++. .|.|+|||||..+-+.-+  ..|+.|-. ..|-..|       .+..+=+|||
T Consensus       239 ~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~--~~G~~DAa-NlLKPaL-------arGelr~IgA  308 (852)
T TIGR03346       239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK--AEGAMDAG-NMLKPAL-------ARGELHCIGA  308 (852)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf             775215300789999999999998589987999612555326887--66641067-7743787-------4798559982


Q ss_pred             CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             29810-----08833316564231410001347889999999
Q gi|254780545|r  293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      |-.-+     .=|+||-|  ||. .|.|.-|+.+.-..||+-
T Consensus       309 TT~~EYrk~iEkD~AL~R--RFq-~I~V~EPs~e~t~~IL~g  347 (852)
T TIGR03346       309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRG  347 (852)
T ss_pred             CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHH
T ss_conf             789999988322688997--377-120479986899999997


No 75 
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.42  E-value=2.3e-13  Score=115.69  Aligned_cols=284  Identities=23%  Similarity=0.334  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s  215 (647)
                      +|..|.|+|-|-+.|.            +++--.-|..||||||||.|||.-||-+--|+          +.||+.+.|+
T Consensus       153 ~f~EiVGQerAI~aLl------------aK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGt  220 (616)
T TIGR02903       153 AFSEIVGQERAIKALL------------AKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGT  220 (616)
T ss_pred             CCCCCCCHHHHHHHHH------------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC
T ss_conf             6764333468999999------------7631888660785573388478999998762136874476113785751576


Q ss_pred             HHH-------HHHHH-------CCHHHHHHHHHHHHHH------------CCHHEEHHHHH---HHH---------CCCC
Q ss_conf             886-------44420-------3324599999999873------------78012063235---641---------4455
Q gi|254780545|r  216 DFV-------ELFVG-------VGASRVRDMFEQAKNN------------SPCIVFVDEID---AVG---------RHRG  257 (647)
Q Consensus       216 ~~~-------~~~~g-------~g~~~vr~lf~~a~~~------------~p~iifiDeid---a~~---------~~r~  257 (647)
                      .+.       .-..|       +|++|  |   .|..-            ---|+|||||=   .+-         .||-
T Consensus       221 TLRWDPREvTNPLLGSVHDPIYQGa~R--D---LAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV  295 (616)
T TIGR02903       221 TLRWDPREVTNPLLGSVHDPIYQGARR--D---LAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV  295 (616)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCH--H---HCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEE
T ss_conf             266774101477677625765567640--1---10478798989871004775676502112227876324443226436


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECC-CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC-
Q ss_conf             78988626889889989985303235--77829999629-810088333165642314100013478899999998548-
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLVEMDGFES--SEGVILIAATN-RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN-  333 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~~mdg~~~--~~~v~vi~aTn-~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~-  333 (647)
                      .-.++-.|+-+.-+-+-.-.+  |+.  ....|+||||- .|+.+-|||+=  |-- .|||.+-+-.+-.+|...-..+ 
T Consensus       296 ~F~SsYYDpdD~NvPkYIK~l--Fe~GAPADFvLIGATTr~P~eINpALRS--RCa-EvfFePL~p~dI~~Iv~~AA~kl  370 (616)
T TIGR02903       296 EFSSSYYDPDDENVPKYIKKL--FEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIKEIVLNAAEKL  370 (616)
T ss_pred             EEEECCCCCCCCCCCHHHHHH--HCCCCCCCEEEECCCCCCHHHCCHHHHC--CCC-EEECCCCCHHHHHHHHHHHHHHC
T ss_conf             653212487537865588885--2268882568726615882440512330--143-13217988789999999988861


Q ss_pred             -CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             -87773211024544120379899999999987645--------532024210456899975013686556766686677
Q gi|254780545|r  334 -VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA--------ARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEK  404 (647)
Q Consensus       334 -~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a--------~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek  404 (647)
                       ..|+++| -+.+|++|.  -|.---|++-.+--++        ...+.-.|+++|+.+-+.        -||..+.+..
T Consensus       371 nv~L~~gV-~e~Ia~YTi--eGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~--------~sRl~Py~~~  439 (616)
T TIGR02903       371 NVKLAEGV-EELIARYTI--EGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQ--------ISRLSPYEKV  439 (616)
T ss_pred             CCCCCCCH-HHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH--------HCCCCCHHHC
T ss_conf             77000364-878721471--311222346546767653045556777742661867776775--------3045750112


Q ss_pred             HHHHHHHHHHHH----HHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHH
Q ss_conf             899999999999----9985058773234322014555640564002443226899999999999
Q gi|254780545|r  405 KITAYHEAGHAV----VACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTIL  465 (647)
Q Consensus       405 ~~vAyHEAGHAl----va~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~  465 (647)
                      +.-+-.|.||-.    .+| +.-.-.|+-+.--.|...-|...|.  +.-.+|+|+-+++-..|.
T Consensus       440 ~~~~~~EvG~vFGLGV~gy-~GS~lEIEa~aF~A~~~GkG~~RfN--dTAGSMaKDSvFNAasvi  501 (616)
T TIGR02903       440 KASDTYEVGHVFGLGVSGY-LGSVLEIEAVAFEAKEKGKGTVRFN--DTAGSMAKDSVFNAASVI  501 (616)
T ss_pred             CCCCCCCEEEEEECCCCCC-CCCEEEEEEEEECCCCCCCEEEEEE--CCCCCCHHHHHHHHHHHH
T ss_conf             4688863046870421210-0233355504423778995058861--565530357789889998


No 76 
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42  E-value=1.3e-11  Score=103.09  Aligned_cols=203  Identities=25%  Similarity=0.320  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC-----------
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699702058-----------
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS-----------  213 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~-----------  213 (647)
                      .+|+||.|++.++..|+..+.           ..++|...||+||+|||||.+|+++|....+.--.-.           
T Consensus        14 ~~F~dvVGQ~~vv~~L~nai~-----------~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~   82 (462)
T PRK06305         14 QTFSEILGQDAVVTVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICK   82 (462)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             987660490999999999998-----------499762343038998599999999999967999988889887668889


Q ss_pred             ------HHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             ------578864442--0332459999999987378-----012063235641445578988626889889989985303
Q gi|254780545|r  214 ------GSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG  280 (647)
Q Consensus       214 ------~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg  280 (647)
                            ..|++|+-.  .-|-..||+|-+.++ .+|     -|+.|||.|.+-              .+.-|.||--|. 
T Consensus        83 ~I~~g~~~DViEiDaAs~~gVddIRel~e~v~-~~P~~~~yKVyIIDEvhmLs--------------~~AfNALLKtLE-  146 (462)
T PRK06305         83 EISSGTSLDVIEIDGASHRGIEDIRQINETVL-FTPSKSQYKIYIIDEVHMLT--------------KEAFNSLLKTLE-  146 (462)
T ss_pred             HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHH-
T ss_conf             98638999868643553446689999997710-08867750599981521179--------------999999999861-


Q ss_pred             CCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             235778299996298100883331-656423141000134788999999985--48877732110245441203798999
Q gi|254780545|r  281 FESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADL  357 (647)
Q Consensus       281 ~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi  357 (647)
                       +....|+.|-||+.|+.|-+.++ |--|||.+ .++.-+...|   |+.-+  .++..+++ -+..||+...| |=.|-
T Consensus       147 -EPP~~v~FILaTTe~~KIp~TIlSRCQrf~F~-~i~~~~I~~~---L~~I~~~E~i~~e~~-AL~lIA~~a~G-smRDA  219 (462)
T PRK06305        147 -EPPQHVKFFLATTEIHKIPGTILSRCQKMHLK-RIPEETIIDK---LALIAQQDGIETSRE-ALLPIARAAQG-SLRDA  219 (462)
T ss_pred             -CCCCCEEEEEEECCHHHCCHHHHHHHHEEECC-CCCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf             -89877499998188142854787654023325-7999999999---999999839985999-99999998589-58789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9999998764553202421045689997
Q gi|254780545|r  358 RNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      .++...+.-    -+...|+.+++.+.+
T Consensus       220 lslLDQ~i~----~~~~~it~~~V~~~l  243 (462)
T PRK06305        220 ESLYDYVVG----LFPKSLSPDTVAKAL  243 (462)
T ss_pred             HHHHHHHHH----HCCCCCCHHHHHHHH
T ss_conf             999999998----479986899999986


No 77 
>KOG2004 consensus
Probab=99.41  E-value=7.8e-13  Score=111.85  Aligned_cols=163  Identities=28%  Similarity=0.474  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf             8898528899999999987--433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDF--LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV-  218 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~--l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~-  218 (647)
                      .|--|++++|+.+.|.+.-  |++.     ..+   +=+-|+||||.|||-+||.||...+--||-.|-      +++- 
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs-----~qG---kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG  482 (906)
T KOG2004         411 EDHYGMEDVKERILEFIAVGKLRGS-----VQG---KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG  482 (906)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCC-----CCC---CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf             6530168899999999998751466-----788---37998689987732189999998487469985366342776425


Q ss_pred             --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC------------
Q ss_conf             --444203324599999999873780120632356414455789886268898899899853032357------------
Q gi|254780545|r  219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS------------  284 (647)
Q Consensus       219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~------------  284 (647)
                        .-|||.=+-|+=+...+.+-.-| ++.|||||-+|  ||.  .|  |    --..||.-||- +.|            
T Consensus       483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~--qG--D----PasALLElLDP-EQNanFlDHYLdVp~  550 (906)
T KOG2004         483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGH--QG--D----PASALLELLDP-EQNANFLDHYLDVPV  550 (906)
T ss_pred             CCEEEECCCCHHHHHHHHHHCCCCC-EEEEEHHHHHC--CCC--CC--C----HHHHHHHHCCH-HHCCCHHHHCCCCCC
T ss_conf             4211001488489999986177886-58853223417--887--79--8----68999874396-535534542026642


Q ss_pred             --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf             --7829999629810088333165642314100013478899999998548
Q gi|254780545|r  285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN  333 (647)
Q Consensus       285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~  333 (647)
                        +.|+.||+.|..|.+.|+||-  |.+ .|+++==..++..+|-+-||-.
T Consensus       551 DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip  598 (906)
T KOG2004         551 DLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP  598 (906)
T ss_pred             CHHHEEEEEECCCCCCCCHHHHH--HHH-EEECCCCCHHHHHHHHHHHHHH
T ss_conf             11106889853644569856641--223-2203672279899999984125


No 78 
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40  E-value=5.8e-12  Score=105.58  Aligned_cols=203  Identities=24%  Similarity=0.302  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------CC-----
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699702-------05-----
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------TI-----  212 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------~~-----  212 (647)
                      .+|+||.|++.++..|+..+.           -.++|...||+||+|||||-+|+++|....+..-       ..     
T Consensus        13 ~~F~dvvGQe~vv~~L~nai~-----------~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~   81 (560)
T PRK06647         13 RDFNSLEGQDFVVETLKHSIE-----------KNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKS   81 (560)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             865440394999999999997-----------499774366328998789999999999965999999888878878888


Q ss_pred             ----CHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             ----85788644420--332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r  213 ----SGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       213 ----~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                          +..+++|+-..  -|-..||++-+.++ .+|     -|+.|||.|.+-              .+.-|.||--|.  
T Consensus        82 i~~g~~~DviEidaasn~~VddIR~l~e~v~-~~P~~~~yKV~IIDEahmLt--------------~~A~NALLKtLE--  144 (560)
T PRK06647         82 IDNDSSLDVIEIDGASNTSVQDVRQIKEEIM-FPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIE--  144 (560)
T ss_pred             HHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHH--
T ss_conf             7459998757643645488899999999863-28766870699964656559--------------999999999863--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
                      +....++.|-|||.|+.|-|.++ |--||+.+ .++.-+...|   |+.-+  .+...+++ -+..+|+...| |=.|--
T Consensus       145 EPP~~~~FILaTte~~KI~~TI~SRCQ~f~Fk-~i~~~~I~~~---L~~I~~~E~i~~e~~-AL~lIa~~a~G-s~RDal  218 (560)
T PRK06647        145 EPPPYIVFIFATTEVHKLPATIKSRCQHFNFR-LLSLEKIYEM---LKKVCLEDDIKYEDE-ALKWIAYKSGG-SVRDAY  218 (560)
T ss_pred             CCCCCEEEEEECCCHHHCHHHHHHHHEEEECC-CCCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHH
T ss_conf             48875599997799476848999651041055-5999999999---999998679887999-99999997789-588899


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             999998764553202421045689997
Q gi|254780545|r  359 NLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      ++..++...    +...|+.+++.+-+
T Consensus       219 slldq~i~~----~~~~i~~~~v~~~l  241 (560)
T PRK06647        219 TLFDQIVSF----SNSDITLEQIRSKM  241 (560)
T ss_pred             HHHHHHHHC----CCCCCCHHHHHHHH
T ss_conf             999999960----79977899999986


No 79 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.38  E-value=3.8e-12  Score=106.90  Aligned_cols=160  Identities=24%  Similarity=0.392  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CC-------CEECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246---99-------70205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NV-------PFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~-------~f~~~~~s  215 (647)
                      +++-|.|-++   |++.+++.|-.         |--...+|.|+||+|||-++..+|...   .|       -.++.+-+
T Consensus       176 kldpvIGRd~---EI~r~i~IL~R---------R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg  243 (857)
T PRK10865        176 KLDPVIGRDE---EIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG  243 (857)
T ss_pred             CCCCCCCCHH---HHHHHHHHHHC---------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf             9998858299---99999999702---------57899758789998899999999999983899978816902473388


Q ss_pred             HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r  216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                      .++  ..|.|+=+.|++.+.+...+. .++|+|||||..+-..-+  ..|+.|-. ..|-..|       .+..+=+|||
T Consensus       244 ~L~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~--~~G~~Daa-NlLKPaL-------aRGelr~IGA  313 (857)
T PRK10865        244 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK--ADGAMDAG-NMLKPAL-------ARGELHCVGA  313 (857)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf             786147652117999999999998478986999734354336887--77753478-8867887-------3798549994


Q ss_pred             CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             29810-----088333165642314100013478899999998
Q gi|254780545|r  293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      |-.-+     .=|+||-|  ||. .|.|.-|+.+.-..||+-.
T Consensus       314 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~e~ti~ILrgl  353 (857)
T PRK10865        314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGL  353 (857)
T ss_pred             CCHHHHHHHCCCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             589999987134588998--537-1006899879999999988


No 80 
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.37  E-value=2.1e-12  Score=108.70  Aligned_cols=159  Identities=28%  Similarity=0.471  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH----HHHHHHCCCCCC-------EECCCH
Q ss_conf             698898528899999999987433567664201233311003787425888----999974246997-------020585
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL----LARAVAGEANVP-------FFTISG  214 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl----la~a~a~e~~~~-------f~~~~~  214 (647)
                      +.|=+.|-++.-   +..+..|-...|=         .=||+|-||.|||=    ||+.|+--..||       .|+.+-
T Consensus       206 kiDPLIGRE~El---eRtiQvLCRR~KN---------NPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm  273 (774)
T TIGR02639       206 KIDPLIGREDEL---ERTIQVLCRRKKN---------NPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM  273 (774)
T ss_pred             CCCCCCCCHHHH---HHHHHHHCCCCCC---------CCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH
T ss_conf             878734566887---4233320345678---------8720448886448999999998641564670024783454043


Q ss_pred             HHHH--HHHHHCCHHHHHHHHHHHHHHCCH-HEEHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             7886--444203324599999999873780-1206323564144557898862-68898899899853032357782999
Q gi|254780545|r  215 SDFV--ELFVGVGASRVRDMFEQAKNNSPC-IVFVDEIDAVGRHRGIGLGGGN-DEREQTLNQLLVEMDGFESSEGVILI  290 (647)
Q Consensus       215 s~~~--~~~~g~g~~~vr~lf~~a~~~~p~-iifiDeida~~~~r~~~~~~~~-~e~~~~ln~ll~~mdg~~~~~~v~vi  290 (647)
                      ..++  .+|-|.=+.|++.+-++-.+..-+ |+|||||..|=..=+  .+||+ |-. ..|=.-|       .+..+=+|
T Consensus       274 G~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGA--TSGGsmDAS-NLLKPaL-------~~G~iRCI  343 (774)
T TIGR02639       274 GTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGA--TSGGSMDAS-NLLKPAL-------ASGKIRCI  343 (774)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCC--CCCHHHHHH-HHHHHHH-------HCCCEEEE
T ss_conf             4564102454247899999999985289995466411010331787--875155244-3211253-------07877862


Q ss_pred             EECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             96298100-----8833316564231410001347889999999
Q gi|254780545|r  291 AATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       291 ~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      |||-+-+-     =|.||-|  ||- +|.|+=|+.++-.+||+-
T Consensus       344 GsTTy~EY~~~FeKDrALsR--RFQ-KIDv~EPs~eet~~ILkG  384 (774)
T TIGR02639       344 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKG  384 (774)
T ss_pred             CCCCHHHHHCHHHCCCCCCC--CCC-EECCCCCCHHHHHHHHHH
T ss_conf             26524864111010202165--423-311795788899999986


No 81 
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.37  E-value=5.2e-11  Score=98.66  Aligned_cols=225  Identities=24%  Similarity=0.322  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHCC-------CCCC-EE--CCCH---
Q ss_conf             89852889999999998743356766420-123331100378742588899997424-------6997-02--0585---
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLG-GRIPHGVLLVGPPGTGKTLLARAVAGE-------ANVP-FF--TISG---  214 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g-~~~p~g~ll~GppGtGKTlla~a~a~e-------~~~~-f~--~~~~---  214 (647)
                      .+.|=|+--++|.   ..|+.     -+. +..|.-|++|||+|||||+-++.+..+       .++. |-  ++.+   
T Consensus        18 ~i~hRdeqI~~l~---~~L~~-----~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~   89 (383)
T TIGR02928        18 RIVHRDEQIEELA---KALRP-----ILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQIL   89 (383)
T ss_pred             CCCCCHHHHHHHH---HHHHH-----HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             4668678999999---99887-----506748987258878889878899999999999986226997158999778546


Q ss_pred             -------HHHHHHH----H-------HCCHH-HHHHHHHHHH-HHCCHHEEH-HHHHHHHCCCCCCCCCCCHH--HHHHH
Q ss_conf             -------7886444----2-------03324-5999999998-737801206-32356414455789886268--89889
Q gi|254780545|r  215 -------SDFVELF----V-------GVGAS-RVRDMFEQAK-NNSPCIVFV-DEIDAVGRHRGIGLGGGNDE--REQTL  271 (647)
Q Consensus       215 -------s~~~~~~----~-------g~g~~-~vr~lf~~a~-~~~p~iifi-Deida~~~~r~~~~~~~~~e--~~~~l  271 (647)
                             +++++.+    .       |...+ --+.||+.-. +....+||| ||||.+. ++..      |+  -.++|
T Consensus        90 ~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~------d~PAyS~~L  162 (383)
T TIGR02928        90 DTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDD------DDPAYSKLL  162 (383)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCC------CCHHHHHHH
T ss_conf             846999999999851577888898877878999999999983201887999862310221-5888------880787885


Q ss_pred             HHHHHHH-CCCCCCCCEEEEEECCCC---CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH-CCCCCCCCCCH----
Q ss_conf             9899853-032357782999962981---00883331656423141000134788999999985-48877732110----
Q gi|254780545|r  272 NQLLVEM-DGFESSEGVILIAATNRP---DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS-RNVPLAPNVIL----  342 (647)
Q Consensus       272 n~ll~~m-dg~~~~~~v~vi~aTn~~---~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~-~~~~~~~~~d~----  342 (647)
                      =+|+--- .|=-.+..|-|||=||..   +.|||=..= -=-.+.|.|++=|.++-.+||+-=. + +.+.+++=-    
T Consensus       163 Y~L~Ra~~~~~~~~~~vgvIgISND~~f~~~Ld~RVkS-sL~~eei~FpPYdA~eL~~IL~~R~v~-~AF~dGvl~d~VI  240 (383)
T TIGR02928       163 YQLSRARENGDLENAKVGVIGISNDLKFRENLDPRVKS-SLCEEEIVFPPYDAEELRDILENRAVE-KAFYDGVLDDGVI  240 (383)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEECCCHHHHHCCCCEEC-CCCCCCCEECCCCHHHHHHHHHHHHHH-HCCCCCCCCHHHH
T ss_conf             34331000357788534899986571436445753013-248740040798869999999720312-0336885462279


Q ss_pred             ---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCC
Q ss_conf             ---2454412037989999999998764553202421045689997501-368
Q gi|254780545|r  343 ---KTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKI-LMG  391 (647)
Q Consensus       343 ---~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv-~~G  391 (647)
                         ..+|.+.+| +.-.==.|++.|.-.|-++|+..|+.+|+.+|.+++ -..
T Consensus       241 ~lcAA~aAq~hG-DAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~e~~PE~~  292 (383)
T TIGR02928       241 PLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEEAQEKIPEVD  292 (383)
T ss_pred             HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             999998620678-7899999999876875315763100888999998322288


No 82 
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.37  E-value=8.4e-12  Score=104.39  Aligned_cols=299  Identities=24%  Similarity=0.315  Sum_probs=179.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEE
Q ss_conf             242256988985288999999999874335676642012333110037874258889999742469----------9702
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFF  210 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~  210 (647)
                      .+|+ .|+||.|+|+=-+.|+            ..|-+.=|..|.+|||||.|||=-||=+-.||.          ..|+
T Consensus        59 ~RP~-SF~EIiGQe~GI~ALK------------AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV  125 (532)
T TIGR02902        59 TRPK-SFDEIIGQEEGIKALK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV  125 (532)
T ss_pred             CCCC-CCCCCCCCHHHHHHHH------------HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             6777-6332567355689999------------86068689638987886961789999999986508753789886689


Q ss_pred             CCCHHH--HHH--------------HHHHCCHHHHHHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             058578--864--------------4420332459999-----9999873780120632356414455789886268898
Q gi|254780545|r  211 TISGSD--FVE--------------LFVGVGASRVRDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ  269 (647)
Q Consensus       211 ~~~~s~--~~~--------------~~~g~g~~~vr~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~  269 (647)
                      -++++.  |=|              .|-|.|+-=+--+     =+-.|++ -=|+|||||=-|-+              =
T Consensus       126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP--------------~  190 (532)
T TIGR02902       126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHP--------------V  190 (532)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCH--------------H
T ss_conf             85051036021466665677615853337654578855758777632025-86551212466582--------------4


Q ss_pred             HHHHHHHHHCC---------C-CCCCC----------------EEEEEEC-CCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf             89989985303---------2-35778----------------2999962-98100883331656423141000134788
Q gi|254780545|r  270 TLNQLLVEMDG---------F-ESSEG----------------VILIAAT-NRPDVLDAALLRPGRFDRQITVPNPDIVG  322 (647)
Q Consensus       270 ~ln~ll~~mdg---------~-~~~~~----------------v~vi~aT-n~~~~lD~al~RpgRfd~~i~~~~P~~~~  322 (647)
                      -+|-||--|.-         | +++.+                -=+|||| -.|+-|.|||+=  | =-.|+|..-+.++
T Consensus       191 ~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRS--R-C~EIFFR~L~~EE  267 (532)
T TIGR02902       191 QMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRS--R-CVEIFFRPLLKEE  267 (532)
T ss_pred             HHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHC--C-CEEEEECCCCHHH
T ss_conf             353141133022200001235877786542789972067873401213336987767834650--5-2267716888789


Q ss_pred             HHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9999999854887--77321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r  323 REHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT  400 (647)
Q Consensus       323 r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~  400 (647)
                      -++|-|.-.+|.-  ++++ -++.|++++  -||.|--||+.=||=.++-+||+.|..+|++.-++-             
T Consensus       268 i~~iAk~AaeKIg~~l~~~-Al~~I~~Ya--~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~-------------  331 (532)
T TIGR02902       268 IKEIAKNAAEKIGLNLEKE-ALDLIAKYA--SNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES-------------  331 (532)
T ss_pred             HHHHHHHHHHHCCCCCCHH-HHHHHHHHH--CCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH-------------
T ss_conf             9999876565304654754-799999874--054067789999731401288761205464455530-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCEEEEHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66778999999999999985058773234322014-55564056400244322-----6899999999999878988888
Q gi|254780545|r  401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPR-GRALGMVMQLPEADRHS-----TTYVWMTSRLTILMGGRVAEEF  474 (647)
Q Consensus       401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipR-g~alG~t~~~p~~d~~~-----~tk~~l~~~i~v~LgGRaAEei  474 (647)
                                       +-|.|..+  .|++-.|+ |...|...+=|+.-..+     .++.+...+=.|-..|=+=||-
T Consensus       332 -----------------G~y~Pk~~--~k~~~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~  392 (532)
T TIGR02902       332 -----------------GNYHPKPE--IKLSSEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEE  392 (532)
T ss_pred             -----------------CCCCCCCC--EEECCCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECE
T ss_conf             -----------------47877434--02078885356655446067755130234377660114884289988871000


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf             61368756523355899999999998624-888
Q gi|254780545|r  475 TFGEDNVTSGAMSDIEYATKLARVMVTQF-GFS  506 (647)
Q Consensus       475 ~fG~~~ittGAs~DL~~AT~iA~~mV~~~-GMs  506 (647)
                      + |..+-+--..|-.+-+-+=+..|..++ ||.
T Consensus       393 ~-gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i~  424 (532)
T TIGR02902       393 I-GGSGKSVRRKSSAKGSVENVLAVLKSVFNIN  424 (532)
T ss_pred             E-CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             1-7989615200224430889999999884788


No 83 
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37  E-value=1.5e-11  Score=102.53  Aligned_cols=73  Identities=42%  Similarity=0.621  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHC
Q ss_conf             988985288999999999874335676642012333110037874258889999742469--970205857886444203
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGV  224 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~  224 (647)
                      =+-..|+.+|.+..--||+..|.       |-.--||||+.||||||||-||-++|.|.|  +||.++|||++.+.-+.-
T Consensus        38 ~dG~VGQ~~AReAaGvIv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK  110 (450)
T COG1224          38 GDGLVGQEEAREAAGVIVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK  110 (450)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCH
T ss_conf             88611249888762599999971-------76666179997899976889999999985899982150133223310008


Q ss_pred             CH
Q ss_conf             32
Q gi|254780545|r  225 GA  226 (647)
Q Consensus       225 g~  226 (647)
                      ++
T Consensus       111 TE  112 (450)
T COG1224         111 TE  112 (450)
T ss_pred             HH
T ss_conf             89


No 84 
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36  E-value=4.9e-12  Score=106.08  Aligned_cols=220  Identities=23%  Similarity=0.398  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCC-------EECCCHHH
Q ss_conf             9889852889999999998743356766420123331100378742588899997424---6997-------02058578
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP-------FFTISGSD  216 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~-------f~~~~~s~  216 (647)
                      .|-|.|-++   |++.+++.|-.         |--...+|.|+||+|||-++..+|..   -.||       .++.+-+.
T Consensus       185 lDPviGR~~---Ei~r~i~iL~R---------r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~  252 (758)
T PRK11034        185 IDPLIGREK---ELERAIQVLCR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS  252 (758)
T ss_pred             CCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
T ss_conf             998738489---99999999976---------325896021699986999999999999738997655898899845877


Q ss_pred             HH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             86--4442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  217 FV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       217 ~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                      ++  .+|-|.=+.|++.+.+..++..++|+|||||..+-..- ++.+|+-|-. ..|-..|       .+..+-+||||-
T Consensus       253 LiAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG-~~~gg~~Daa-NlLKP~L-------arG~l~~IgaTT  323 (758)
T PRK11034        253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-AASGGQVDAA-NLIKPLL-------SSGKIRVIGSTT  323 (758)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCC-CCCCCCCCHH-HHHHHHH-------HCCCCEEEEECC
T ss_conf             861686415499999999999985798599980434422688-7677764678-8745787-------469723999437


Q ss_pred             CCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHH----C-CCHHHHH
Q ss_conf             810-----08833316564231410001347889999999854------887773211024544120----3-7989999
Q gi|254780545|r  295 RPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR------NVPLAPNVILKTIARGTP----G-FSGADLR  358 (647)
Q Consensus       295 ~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~------~~~~~~~~d~~~la~~t~----g-~sgAdi~  358 (647)
                      .-+     .=|+||.|  ||. .|.|.-|+.+.-..||+-.-.      +..+.++ .+...++.+.    + |=+.---
T Consensus       324 ~~EYrk~iekD~AL~R--RFq-~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~-al~~av~Ls~rYi~dr~lPDKAI  399 (758)
T PRK11034        324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDKAI  399 (758)
T ss_pred             HHHHHHCCCCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCH-HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             7998750321478884--282-6531899989999999989998732369577438-99999999976502688961999


Q ss_pred             HHHHHHHHHH----HHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf             9999987645----532024210456899975013686
Q gi|254780545|r  359 NLVNEAALMA----ARRNRRLVTMQEFEDAKDKILMGA  392 (647)
Q Consensus       359 ~~~~eAa~~a----~r~~~~~i~~~dl~~A~~rv~~G~  392 (647)
                      .|+.||+-.+    ..+.++.|+..|+...+.+. .|.
T Consensus       400 dllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~-t~i  436 (758)
T PRK11034        400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI-ARI  436 (758)
T ss_pred             HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH-HCC
T ss_conf             9999998887513456631658999999999875-036


No 85 
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36  E-value=7.6e-12  Score=104.69  Aligned_cols=159  Identities=26%  Similarity=0.427  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCC-------EECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246---997-------0205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVP-------FFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~-------f~~~~~s  215 (647)
                      +++-|.|-++   |++.+++.|-.         |.-...+|.|.||+|||-++..+|...   .||       +++.+-.
T Consensus       177 klDpvIGRd~---EI~r~i~IL~R---------R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~  244 (823)
T CHL00095        177 NLDPVIGRDK---EIERVIQILGR---------RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIG  244 (823)
T ss_pred             CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf             9998759569---99999999977---------32488502379998799999999997608899868759936884288


Q ss_pred             HHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             886--444203324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r  216 DFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       216 ~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
                      .++  .+|.|+=+.|++.+++..++...+|+|||||..+-..-++  .|+-|-. ..|-..|       .+..+=+||||
T Consensus       245 ~L~AGtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~--~g~~Daa-NlLKPaL-------arGel~~IGAT  314 (823)
T CHL00095        245 LLLAGTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAA--EGAIDAA-NILKPAL-------ARGKLQCIGAT  314 (823)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCC--CCCHHHH-HHHHHHH-------HCCCCEEEEEC
T ss_conf             775334222679999999999998579869997351653288976--6643178-8765786-------48986699707


Q ss_pred             CCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             9810-----08833316564231410001347889999999
Q gi|254780545|r  294 NRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       294 n~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      ..-+     .-|+||-|  ||. .|.|.-|+.++-..||+-
T Consensus       315 T~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~e~t~~IL~g  352 (823)
T CHL00095        315 TLEEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILLG  352 (823)
T ss_pred             CHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHH
T ss_conf             88999998530588996--268-410289987999999999


No 86 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34  E-value=7.8e-11  Score=97.37  Aligned_cols=159  Identities=23%  Similarity=0.362  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH-
Q ss_conf             898528899999999987433567664201233----311003787425888999974246---997020585788644-
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP----HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL-  220 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p----~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~-  220 (647)
                      -|.|+++|...+.+.|.-       .+.|.+-|    --.||.||+|+|||-|||++|...   .-.++.+..|+|.|. 
T Consensus       569 rViGQd~AI~~v~~aI~~-------sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~h  641 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH  641 (857)
T ss_pred             HHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCH
T ss_conf             852809999999999999-------8638999999738999868987888999999999983893342562533211301


Q ss_pred             -----------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC---
Q ss_conf             -----------420332459999999987378012063235641445578988626889889989985303-2-357---
Q gi|254780545|r  221 -----------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS---  284 (647)
Q Consensus       221 -----------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~---  284 (647)
                                 |||-++.-  .|.+.-|++--|||++|||+--           |   -.++|-||.-||- . ..+   
T Consensus       642 sVSrLiGaPPGYVGy~eGG--~LTeaVRr~PySVvLfDEIEKA-----------H---pdV~nilLQvlD~G~LtD~~Gr  705 (857)
T PRK10865        642 SVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKA-----------H---PDVFNILLQVLDDGRLTDGQGR  705 (857)
T ss_pred             HHHHHCCCCCCCCCCCCCC--CHHHHHHHCCCEEEEEHHHHHH-----------C---HHHHHHHHHHHCCCEEECCCCC
T ss_conf             2767558998766757788--1109998198778863257663-----------8---5899999987036832079998


Q ss_pred             ----CCEEEEEECCCCC-C------------------------CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             ----7829999629810-0------------------------8833316564231410001347889999999854
Q gi|254780545|r  285 ----EGVILIAATNRPD-V------------------------LDAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       285 ----~~v~vi~aTn~~~-~------------------------lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                          .+.|+|.++|--. .                        .-|.++  +|+|..|.+.+-+.+.-..|+.++++
T Consensus       706 ~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFl--nRiD~iv~F~pL~~~~l~~Iv~~~l~  780 (857)
T PRK10865        706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQLQ  780 (857)
T ss_pred             EEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH--HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             8851334899646233699986506556688999999999864798888--23784898278999999999999999


No 87 
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34  E-value=3.2e-11  Score=100.16  Aligned_cols=173  Identities=18%  Similarity=0.308  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH-
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997020585788644420-
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG-  223 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g-  223 (647)
                      .+|+||.|++++++.|+..+.           ..++|...||+||+|+|||.+|+++|...-+.--.-+.+|+++.-.. 
T Consensus         1 M~f~~iiGq~~i~~~L~~~i~-----------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~   69 (313)
T PRK05564          1 MSFRTIIGHENIKNRIDNSII-----------KGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN   69 (313)
T ss_pred             CCHHHCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf             983232682999999999998-----------799875043279998509999999999982899778898658863322


Q ss_pred             ---CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             ---332459999999987378-----012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  224 ---VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       224 ---~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                         .+-..||+|-+.+.. +|     =|++|||.|.+-              .+.-|.||--+.  ++.++++.|-+|+.
T Consensus        70 ~~~I~vd~IR~l~~~~~~-~p~~g~~KV~II~~ae~m~--------------~~AaNALLKtLE--EPP~~t~fIL~t~~  132 (313)
T PRK05564         70 KKSIGVDDIRNIIEEVNK-KPYEGDKKVIIIYKSEKMT--------------EQAQNAFLKTIE--EPPKGVFIILLCEN  132 (313)
T ss_pred             CCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHC--------------HHHHHHHHHCCC--CCCCCEEEEEEECC
T ss_conf             569998999999999840-8625895699980777758--------------999999845503--68998589986498


Q ss_pred             CCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             100883331-656423141000134788999999985488777321102454412037
Q gi|254780545|r  296 PDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGF  352 (647)
Q Consensus       296 ~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~  352 (647)
                      |+.|-|-++ |.-+    +.+.+|+.+.-...|.....+  ++++ ....+++.+.|.
T Consensus       133 ~~~lLpTI~SRCQ~----~~f~~l~~~~i~~~L~~~~~~--~~~~-~~~~~~~~s~G~  183 (313)
T PRK05564        133 LEQILDTIKSRCQI----YKLNRLSKEDIEKFISYKYND--IDEE-NKNSAIAFSDGI  183 (313)
T ss_pred             HHHCCCHHHCCCEE----EECCCCCHHHHHHHHHHHCCC--CCHH-HHHHHHHHCCCC
T ss_conf             35475778706535----668998999999999986258--9999-999999982998


No 88 
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33  E-value=3.5e-11  Score=99.90  Aligned_cols=159  Identities=30%  Similarity=0.416  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECC
Q ss_conf             4225698898528899999999987433567664201233--311003787425888999974246-------9970205
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTI  212 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~  212 (647)
                      ++---|..|.|++++|..|.-              .+--|  .|||+.||||||||.+|||+|.=.       ++||=..
T Consensus         6 ~~~fPf~aIvGQe~~k~aLll--------------~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~   71 (347)
T CHL00081          6 RPVFPFTAIVGQEEMKLALLL--------------NVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSD   71 (347)
T ss_pred             CCCCCHHHHCCHHHHHHHHHH--------------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             788984065384999999999--------------825788786998789987499999999985787422068876789


Q ss_pred             C------HH-------------------HHHHHHHHCCHHHHH---HH----------HH---HHHHHCCHHEEHHHHHH
Q ss_conf             8------57-------------------886444203324599---99----------99---99873780120632356
Q gi|254780545|r  213 S------GS-------------------DFVELFVGVGASRVR---DM----------FE---QAKNNSPCIVFVDEIDA  251 (647)
Q Consensus       213 ~------~s-------------------~~~~~~~g~g~~~vr---~l----------f~---~a~~~~p~iifiDeida  251 (647)
                      .      ++                   -|+++=+|.++-||-   |+          |+   .|+.+ --|+|||||.=
T Consensus        72 p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~-rGiLyvDEINl  150 (347)
T CHL00081         72 PRDPDLMSDEVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN-RGILYVDEVNL  150 (347)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCC-CCEEEEEHHHH
T ss_conf             89810024266654314666752114686253688885230114000998984587115653122203-88588614543


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHH---------CCCCCC--CCEEEEEECCCCC-CCCHHHCCCCCCCCEEEEC-HH
Q ss_conf             414455789886268898899899853---------032357--7829999629810-0883331656423141000-13
Q gi|254780545|r  252 VGRHRGIGLGGGNDEREQTLNQLLVEM---------DGFESS--EGVILIAATNRPD-VLDAALLRPGRFDRQITVP-NP  318 (647)
Q Consensus       252 ~~~~r~~~~~~~~~e~~~~ln~ll~~m---------dg~~~~--~~v~vi~aTn~~~-~lD~al~RpgRfd~~i~~~-~P  318 (647)
                      +-              +.++|.||.-|         ||++-.  ...++||+-|=.+ .|-|+++=  ||.-++.++ .+
T Consensus       151 l~--------------d~~v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llD--RF~l~v~v~~~~  214 (347)
T CHL00081        151 LD--------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLIGSGNPEEGELRPQLLD--RFGMHAEIRTVK  214 (347)
T ss_pred             HH--------------HHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCCCCCCHHHHH--HEEEEEECCCCC
T ss_conf             23--------------79999999998558089804642330575006885578655674888882--632267458878


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4788999999985
Q gi|254780545|r  319 DIVGREHILMVHS  331 (647)
Q Consensus       319 ~~~~r~~i~~~~~  331 (647)
                      |.+.|.+|++..+
T Consensus       215 ~~e~R~eiv~~r~  227 (347)
T CHL00081        215 DPELRVKIVEQRS  227 (347)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9899999999999


No 89 
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.31  E-value=1.9e-12  Score=109.09  Aligned_cols=110  Identities=37%  Similarity=0.456  Sum_probs=72.9

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH--HHHH------CCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf             11003787425888999974246-99702058578864--4420------332459999999987378012063235641
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE--LFVG------VGASRVRDMFEQAKNNSPCIVFVDEIDAVG  253 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~--~~~g------~g~~~vr~lf~~a~~~~p~iifiDeida~~  253 (647)
                      ||||+||||||||.+|+.+|... +.|++.+.++...+  -++|      -+.......|-.|-+ .++|+||||||..-
T Consensus         1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~-~g~vl~lDEin~a~   79 (139)
T pfam07728         1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAR-EGEIAVLDEINRAN   79 (139)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCC-CCCEEEECCHHHCC
T ss_conf             98999899756999999999980798311121465565222057342379935781551410101-28689963434489


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCCEEEEEECCCCC----CCCHHHCCCCCC
Q ss_conf             4455789886268898899899853032----------------3577829999629810----088333165642
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDGF----------------ESSEGVILIAATNRPD----VLDAALLRPGRF  309 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~----------------~~~~~v~vi~aTn~~~----~lD~al~RpgRf  309 (647)
                                 .   .+++.|+.-||.-                ...+++.|||+.|-.+    .||+||+|  ||
T Consensus        80 -----------~---~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~--RF  139 (139)
T pfam07728        80 -----------P---DVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRS--RF  139 (139)
T ss_pred             -----------H---HHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHC--CC
T ss_conf             -----------9---999999999748969836897273366667899969999758965478009989975--09


No 90 
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.31  E-value=2.4e-10  Score=93.91  Aligned_cols=124  Identities=26%  Similarity=0.422  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH-----
Q ss_conf             985288999999999874335676642012----33311003787425888999974246997020585788644-----
Q gi|254780545|r  150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-----  220 (647)
Q Consensus       150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~-----  220 (647)
                      |.|++++.+.+.+.|.-       .+.|.+    |.--.||.||+|+|||-|||++|...+.+++.+..|+|.|.     
T Consensus       460 viGQ~~Ai~~v~~ai~~-------~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsr  532 (758)
T PRK11034        460 VFGQDKAIEALTEAIKM-------SRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR  532 (758)
T ss_pred             HHCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
T ss_conf             74549999999999999-------86388899997058999789987779999999999866772142665312014777


Q ss_pred             -------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC-------
Q ss_conf             -------420332459999999987378012063235641445578988626889889989985303-2-357-------
Q gi|254780545|r  221 -------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS-------  284 (647)
Q Consensus       221 -------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~-------  284 (647)
                             |||-++.  -.|.+.-|++--|||++|||+--           |   ..++|-||.-||- . ..+       
T Consensus       533 LiGaPPGYVGy~eG--G~Lte~Vr~~PysVvL~DEIEKA-----------h---pdV~nilLQvlD~G~LtD~~Gr~vdF  596 (758)
T PRK11034        533 LIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------H---PDVFNLLLQVMDNGTLTDNNGRKADF  596 (758)
T ss_pred             HCCCCCCCCCCCCC--CCCCHHHHHCCCEEEEEHHHHHH-----------C---HHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf             44899866676777--70128787398779973367563-----------9---89999887323778301799998844


Q ss_pred             CCEEEEEECCCC
Q ss_conf             782999962981
Q gi|254780545|r  285 EGVILIAATNRP  296 (647)
Q Consensus       285 ~~v~vi~aTn~~  296 (647)
                      .+.++|.++|--
T Consensus       597 ~NtiIImTSN~G  608 (758)
T PRK11034        597 RNVVLVMTTNAG  608 (758)
T ss_pred             EEEEEEEECCCC
T ss_conf             001999825617


No 91 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30  E-value=1.2e-10  Score=96.08  Aligned_cols=125  Identities=28%  Similarity=0.455  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH-
Q ss_conf             89852889999999998743356766420123---3-311003787425888999974246---997020585788644-
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---P-HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL-  220 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p-~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~-  220 (647)
                      -|.|+++|.+.+.+.|.-       .+.|.+-   | --.||.||+|+|||.||||+|...   .-.++.+..|+|.|. 
T Consensus       566 rViGQd~AI~~I~~aI~~-------sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~h  638 (852)
T TIGR03346       566 RVVGQDEAVEAVSDAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH  638 (852)
T ss_pred             HHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHH
T ss_conf             971709999999999999-------9718888999745899867887768999999999985585206984304430122


Q ss_pred             -----------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC--
Q ss_conf             -----------420332459999999987378012063235641445578988626889889989985303--23577--
Q gi|254780545|r  221 -----------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE--  285 (647)
Q Consensus       221 -----------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~--  285 (647)
                                 |||-++.  -.|.+..|++--|||++|||+-           .|   ..++|-||.-||-  +..+.  
T Consensus       639 svsrLiGaPPGYVGy~eg--G~Lte~vr~~PysVvL~DEIEK-----------Ah---~~V~~~lLQilD~G~ltD~~Gr  702 (852)
T TIGR03346       639 SVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEK-----------AH---PDVFNVLLQVLDDGRLTDGQGR  702 (852)
T ss_pred             HHHHHCCCCCCCCCCCCC--CEECHHHHHCCCEEEEECCHHH-----------HC---HHHHHHHHHHHCCCEEECCCCC
T ss_conf             477855899976776878--7423989819887998530543-----------07---6899999988236743079998


Q ss_pred             -----CEEEEEECCCC
Q ss_conf             -----82999962981
Q gi|254780545|r  286 -----GVILIAATNRP  296 (647)
Q Consensus       286 -----~v~vi~aTn~~  296 (647)
                           +.|+|.+||.-
T Consensus       703 ~vdF~NtiiimTSN~G  718 (852)
T TIGR03346       703 TVDFRNTVIIMTSNLG  718 (852)
T ss_pred             EEEEEEEEEEEECCCC
T ss_conf             8853556898615406


No 92 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29  E-value=3.4e-11  Score=99.97  Aligned_cols=162  Identities=26%  Similarity=0.386  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCC
Q ss_conf             25698898528899999999987433567664201233311003787425888999974246----------99702058
Q gi|254780545|r  144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTIS  213 (647)
Q Consensus       144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~  213 (647)
                      .-+.|-|.|=|+..   +.+++.|-.         |....-+|.|+||.|||-++..+|..-          +.-.++..
T Consensus       166 ~gklDPvIGRd~EI---~r~iqIL~R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD  233 (786)
T COG0542         166 EGKLDPVIGRDEEI---RRTIQILSR---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD  233 (786)
T ss_pred             CCCCCCCCCHHHHH---HHHHHHHHC---------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEC
T ss_conf             58988773747999---999999835---------688998476689888999998999997469999787588799714


Q ss_pred             HHHHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             57886--4442033245999999998737801206323564144557898862688988998998530323577829999
Q gi|254780545|r  214 GSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIA  291 (647)
Q Consensus       214 ~s~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~  291 (647)
                      -+.++  .+|.|+=+.|++.+-+..++..+.|+|||||..|-..-++..+ +-|    .-| +|--+   -.+..+-+||
T Consensus       234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~-a~D----AaN-iLKPa---LARGeL~~IG  304 (786)
T COG0542         234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD----AAN-LLKPA---LARGELRCIG  304 (786)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCC-CCC----HHH-HHHHH---HHCCCEEEEE
T ss_conf             87674646535738999999999985179849998235540577766666-512----566-46778---7458737997


Q ss_pred             ECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             6298100-----8833316564231410001347889999999
Q gi|254780545|r  292 ATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       292 aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      ||..-+.     -|+||-|  ||- .|.|+-|+.+.-..||+-
T Consensus       305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrG  344 (786)
T COG0542         305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRG  344 (786)
T ss_pred             ECCHHHHHHHHHHCHHHHH--CCC-EEECCCCCHHHHHHHHHH
T ss_conf             3558999887330667784--675-102799898999999987


No 93 
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27  E-value=1.3e-10  Score=95.72  Aligned_cols=188  Identities=29%  Similarity=0.413  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------------C
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699702-------------0
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------------T  211 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------------~  211 (647)
                      .+|+||.|++.+++.|+..+.           -.|++...||+||-|||||.+||.+|...+|.--             .
T Consensus        12 ~~F~eviGQe~v~~~L~~Ai~-----------~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~   80 (775)
T PRK07764         12 ATFAEVVGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVA   80 (775)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             876662285999999999998-----------199763376237888788899999999966899999898888763788


Q ss_pred             CC-HH----HHHHHHH--HCCHHHHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             58-57----8864442--03324599999999873780-----1206323564144557898862688988998998530
Q gi|254780545|r  212 IS-GS----DFVELFV--GVGASRVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       212 ~~-~s----~~~~~~~--g~g~~~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                      +. |+    +++|+=-  .-|-..||+|-+.+ ..+|.     |..|||.+-+-              .+..|.||.-+.
T Consensus        81 i~~g~~~~~DviEiDAAS~~gVddiReL~e~~-~y~P~~~ryKVyIIDEaHmls--------------~~afNALLKtLE  145 (775)
T PRK07764         81 LAPGGPGSLDVVEIDAASHGGVDDARELRERA-FFAPAQSRYRIFIIDEAHMVT--------------TAGFNALLKIVE  145 (775)
T ss_pred             HHCCCCCCCCEEEECCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHHC--------------HHHHHHHHHHHC
T ss_conf             86389888866873156556889999999854-768767863599985354407--------------999999988622


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
                        +....|++|-||-.|+.|-+-++ |.-|||.+- |+..++..+.+-+ ..-.++.++++ -|..+++.. +-|-.|--
T Consensus       146 --EPP~hvvFIlaTTep~kip~TI~SRcq~f~Fr~-i~~~~~~~~l~~i-~~~E~i~~~~~-al~li~r~~-~Gs~RDal  219 (775)
T PRK07764        146 --EPPEHLIFIFATTEPEKVIGTIRSRTHHYPFRL-VPPGTMRPYLERI-CAQEGVVVDDA-VLPLVIRAG-GGSPRDTL  219 (775)
T ss_pred             --CCCCCEEEEEECCCHHHCCHHHHHHCCCCCCCC-CCHHHHHHHHHHH-HHHCCCCCCHH-HHHHHHHHC-CCCHHHHH
T ss_conf             --786462799954873547167764102345266-9999999999999-99839987989-999999982-89667689


Q ss_pred             HHHHHH
Q ss_conf             999998
Q gi|254780545|r  359 NLVNEA  364 (647)
Q Consensus       359 ~~~~eA  364 (647)
                      +|+.+.
T Consensus       220 S~ldQl  225 (775)
T PRK07764        220 SVLDQL  225 (775)
T ss_pred             HHHHHH
T ss_conf             999999


No 94 
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27  E-value=2.2e-10  Score=94.08  Aligned_cols=160  Identities=26%  Similarity=0.393  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s  215 (647)
                      .+|-|.|-++   |++.+++.|-.         |--...+|.|.||+|||-++..+|...          +.-.++.+-+
T Consensus       185 klDPvIGRd~---EI~r~iqIL~R---------r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg  252 (852)
T TIGR03345       185 KIDPVLGRDD---EIRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG  252 (852)
T ss_pred             CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH
T ss_conf             9998869499---99999999986---------24799746579998799999999999976999867743856786788


Q ss_pred             HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r  216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                      .++  .+|-|+=+.|++.+.+..++. .|+|+|||||..+-..-+  ..|+.|-. ..|-..|       .+..+-+|||
T Consensus       253 ~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~--~~G~~Daa-NiLKPaL-------arGelr~IGA  322 (852)
T TIGR03345       253 LLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG--QAGQGDAA-NLLKPAL-------ARGELRTIAA  322 (852)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf             886403576359999999999998489976999634877528998--88862278-8751787-------3787349983


Q ss_pred             CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             29810-----088333165642314100013478899999998
Q gi|254780545|r  293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      |-.-+     .=|+||-|  ||. .|.|.-|+.++-..||+-.
T Consensus       323 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~eeti~IL~gl  362 (852)
T TIGR03345       323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             578999888642688996--247-5527999879999999987


No 95 
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26  E-value=2.7e-10  Score=93.44  Aligned_cols=126  Identities=26%  Similarity=0.437  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf             889852889999999998743356766420123---331-1003787425888999974246---997020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~  220 (647)
                      +-|.|+++|...+.+.|.-       .+.|.+-   |-| .||.||+|+|||-|||++|...   .-.++.+..|+|.|.
T Consensus       509 ~~ViGQd~AI~~vs~ai~r-------sraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~  581 (823)
T CHL00095        509 KRIIGQDEAVVAVSKAIRR-------ARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK  581 (823)
T ss_pred             HHHCCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             7840769999999999999-------970899899974689987899887799999999997478202588535101554


Q ss_pred             ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf             ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r  221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS--  284 (647)
Q Consensus       221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~--  284 (647)
                                  |||-++.  -.|-+.-|++--|||++|||+-           .|   ..++|-||.-||- . ..+  
T Consensus       582 hsvsrLIGaPPGYVGy~eG--G~LTeaVrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlDdG~LtD~~G  645 (823)
T CHL00095        582 HTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEK-----------AH---PDIFNLLLQILDDGRLTDSKG  645 (823)
T ss_pred             CCHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHCCCCCCCCCCC
T ss_conf             2076745899876677878--8201988719986998621311-----------38---899998876516884348999


Q ss_pred             -----CCEEEEEECCCC
Q ss_conf             -----782999962981
Q gi|254780545|r  285 -----EGVILIAATNRP  296 (647)
Q Consensus       285 -----~~v~vi~aTn~~  296 (647)
                           .+.|+|.++|--
T Consensus       646 r~vdF~NtIIImTSNlG  662 (823)
T CHL00095        646 RTIDFKNTLIIMTSNLG  662 (823)
T ss_pred             CEEECEEEEEEECCCCC
T ss_conf             98843103999716505


No 96 
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.25  E-value=1.1e-11  Score=103.47  Aligned_cols=101  Identities=28%  Similarity=0.431  Sum_probs=74.1

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCC---CEECCCHHHHHH-----HHHHC-----CHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf             31100378742588899997424699---702058578864-----44203-----324599999999873780120632
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANV---PFFTISGSDFVE-----LFVGV-----GASRVRDMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~---~f~~~~~s~~~~-----~~~g~-----g~~~vr~lf~~a~~~~p~iifiDe  248 (647)
                      --+||.||||||||.|||++|.....   ||+.+.+++|.+     +.+|.     |...-..|++..+++.+|||||||
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE   83 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE   83 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf             79998898998999999999999679853448855756542569998705899872624265078999838984898657


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC-------CCEEEEEECCCC
Q ss_conf             35641445578988626889889989985303--2357-------782999962981
Q gi|254780545|r  249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS-------EGVILIAATNRP  296 (647)
Q Consensus       249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~-------~~v~vi~aTn~~  296 (647)
                      ||-..+              .+.|-||.-+|+  +..+       .+.++|+++|.-
T Consensus        84 IeKa~~--------------~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g  126 (168)
T pfam07724        84 IEKAHP--------------GVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG  126 (168)
T ss_pred             HHHHCH--------------HHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf             766589--------------9999999870587063699967844647999768737


No 97 
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25  E-value=6.6e-10  Score=90.69  Aligned_cols=221  Identities=21%  Similarity=0.342  Sum_probs=140.1

Q ss_pred             CCCCHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEE
Q ss_conf             1242256988-9852--8899999999987433567-664201233311003787425888999974246-----99702
Q gi|254780545|r  140 GNVGSVTFKD-VAGV--DEAKEDLQEIVDFLCDPQK-FKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFF  210 (647)
Q Consensus       140 ~~~~~v~f~d-v~g~--~~~k~~~~~~v~~l~~~~~-~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~  210 (647)
                      +-.++-||+. |.|-  .-|....+.+.   .+|.. |        .=+.+||++|.|||.|..|++++.     +...+
T Consensus       111 ~Ln~~yTFdnFVvG~sN~lA~aAA~~Va---~~pg~~y--------NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~  179 (447)
T PRK00149        111 NLNPKYTFDNFVVGKSNRLAHAAALAVA---ENPGKAY--------NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV  179 (447)
T ss_pred             CCCCCCCCCCCEECCCCHHHHHHHHHHH---HCCCCCC--------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             8885560326222698599999999998---3767677--------8558977998878899999999999858997289


Q ss_pred             CCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             05857886444203-32459999999987378012063235641445578988626889889989985303235778299
Q gi|254780545|r  211 TISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVIL  289 (647)
Q Consensus       211 ~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~v  289 (647)
                      ++++.+|..-|+.. ....+ +-|..--++. -++.||+|.-++++.            +|..+|+.-.+-+..+..-||
T Consensus       180 Y~tae~F~~~~v~al~~~~~-~~Fr~~yr~~-DvLliDDiqfl~gk~------------~tqeeff~~fn~l~~~~kqiv  245 (447)
T PRK00149        180 YVSSEKFTNDFVKALRNNAM-EEFKEKYRSV-DVLLIDDIQFLAGKE------------KTQEEFFHTFNALHENNKQIV  245 (447)
T ss_pred             EEEHHHHHHHHHHHHHCCCH-HHHHHHHHCC-CEEEECHHHHHHCCH------------HHHHHHHHHHHHHHHCCCEEE
T ss_conf             95499999999999851869-9999999728-854321488860557------------799999999999998499689


Q ss_pred             EEECCCCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             996298100---8833316564231--4100013478899999998548--87773211024544120379899999999
Q gi|254780545|r  290 IAATNRPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVN  362 (647)
Q Consensus       290 i~aTn~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~  362 (647)
                      +++--.|..   ||+-|.-  ||..  .+.+..||.+.|.+||+..++.  ..++++ -++.||.... -+-.+|+..+|
T Consensus       246 ~tsd~~P~~l~~l~~rL~S--Rf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~-v~~~iA~~~~-~nvR~LeGal~  321 (447)
T PRK00149        246 ITSDRPPKELEGLEDRLRS--RFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNE-VLEFIAKRIR-SNIRELEGALN  321 (447)
T ss_pred             EECCCCHHHCCCCCHHHHH--HHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC-CCHHHHHHHHH
T ss_conf             9578896765651177886--763762651059999999999999999728999989-9999997126-88999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             9876455320242104568999750136
Q gi|254780545|r  363 EAALMAARRNRRLVTMQEFEDAKDKILM  390 (647)
Q Consensus       363 eAa~~a~r~~~~~i~~~dl~~A~~rv~~  390 (647)
                      .-...+.-.+ ..|+.+...+++..+..
T Consensus       322 ~l~a~~~~~~-~~i~~~~~~~~l~~~~~  348 (447)
T PRK00149        322 RLVAYASLTG-RPITLELAKEALKDLLR  348 (447)
T ss_pred             HHHHHHHHHC-CCCCHHHHHHHHHHHHH
T ss_conf             9999999868-99999999999998740


No 98 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24  E-value=6e-10  Score=90.96  Aligned_cols=126  Identities=29%  Similarity=0.457  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHHH
Q ss_conf             8898528899999999987433567664201233----3110037874258889999742469---97020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP----HGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p----~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~~  220 (647)
                      +-|.|+|+|...+...|.       -.+.|.+-|    .-.||.||.|+|||-||||+|....   -+++.+..|+|.|.
T Consensus       491 ~rViGQd~AV~~v~~aIr-------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek  563 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIR-------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK  563 (786)
T ss_pred             CCEECHHHHHHHHHHHHH-------HHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf             650173999999999999-------9856999999873578866788656999999999996599744455456877778


Q ss_pred             ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf             ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r  221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS--  284 (647)
Q Consensus       221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~--  284 (647)
                                  |||-.+.  -.|=+.-|++-.|||++|||+-           .|   -.++|-||.-||- . ..+  
T Consensus       564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK-----------AH---pdV~nilLQVlDdGrLTD~~G  627 (786)
T COG0542         564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK-----------AH---PDVFNLLLQVLDDGRLTDGQG  627 (786)
T ss_pred             HHHHHHHCCCCCCCEECCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCCEECCCC
T ss_conf             7799872799987200655--4003766069986888412644-----------08---899999999846780554899


Q ss_pred             -----CCEEEEEECCCC
Q ss_conf             -----782999962981
Q gi|254780545|r  285 -----EGVILIAATNRP  296 (647)
Q Consensus       285 -----~~v~vi~aTn~~  296 (647)
                           .+.++|.++|--
T Consensus       628 r~VdFrNtiIImTSN~G  644 (786)
T COG0542         628 RTVDFRNTIIIMTSNAG  644 (786)
T ss_pred             CEEECCEEEEEEECCCC
T ss_conf             88843002899845026


No 99 
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=99.24  E-value=2.8e-10  Score=93.42  Aligned_cols=194  Identities=22%  Similarity=0.361  Sum_probs=117.6

Q ss_pred             CCHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCC
Q ss_conf             42256988-985--28899999999987433567664201233311003787425888999974246-----99702058
Q gi|254780545|r  142 VGSVTFKD-VAG--VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTIS  213 (647)
Q Consensus       142 ~~~v~f~d-v~g--~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~  213 (647)
                      .++-||++ |.|  ...+..-.+.++   ++|       +.+-..+.+|||+|+|||.|.+|++.++     +...++++
T Consensus         2 ~~~~TFdnF~vg~~N~~a~~~~~~i~---~~~-------~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~   71 (219)
T pfam00308         2 NKRYTFENFVIGSSNRFAHAAALAVA---EAP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLT   71 (219)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHH---HCC-------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99987102023683899999999999---675-------87678269988999988899999999999849998288843


Q ss_pred             HHHHHHHHHHCCHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             57886444203324-59999999987378012063235641445578988626889889989985303235778299996
Q gi|254780545|r  214 GSDFVELFVGVGAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       214 ~s~~~~~~~g~g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                      ..+|...++..-.. .+ .-|..--... -++.||+||.+..+..            +-.+|..-++.+..+.+-+++++
T Consensus        72 ~~~~~~~~~~~l~~~~~-~~f~~~l~~~-d~l~iDDi~~l~~~~~------------~ee~lf~l~N~~~~~~~~lllts  137 (219)
T pfam00308        72 SEEFLNDFVDALRDNKI-EAFKKSYRNV-DLLLIDDIQFLAGKEK------------TQEEFFHTFNALHENNKQIVLTS  137 (219)
T ss_pred             HHHHHHHHHHHHHCCCH-HHHHHHHHHC-CHHHHCCHHHHCCCHH------------HHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999988999981888-8999997632-3365223676568647------------89999999999997298699977


Q ss_pred             CCCCCCCC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             29810088---333165642--314100013478899999998548--877732110245441203798999999999
Q gi|254780545|r  293 TNRPDVLD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNE  363 (647)
Q Consensus       293 Tn~~~~lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~e  363 (647)
                      ..-|..+.   +-|.-  ||  --.+.+..||.+.|.+||+.+.+.  ..++++| ++.|+++.+ -+-.+|..+++.
T Consensus       138 ~~~p~~l~~~~~dL~S--RL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v-~~yl~~r~~-R~~r~L~~~L~~  211 (219)
T pfam00308       138 DRPPKELEGFEDRLRS--RFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEV-LNFIAQRIT-DNVRELEGALNR  211 (219)
T ss_pred             CCCCCCCCCCCHHHHH--HHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHH
T ss_conf             9981002453277999--9868756611699999999999999998499999999-999998427-989999999999


No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22  E-value=1.3e-10  Score=95.83  Aligned_cols=126  Identities=30%  Similarity=0.455  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf             8898528899999999987433567664201233---31-1003787425888999974246---997020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~  220 (647)
                      +-|.|+++|...+.+.|.-       .+.|.+-|   -| .||.||+|+|||-|||++|...   .-.++.+..|+|.|.
T Consensus       566 ~~ViGQ~~Av~~v~~ai~~-------sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~  638 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA  638 (852)
T ss_pred             HHHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCH
T ss_conf             9972849999999999999-------871799999985689987899877899999999997198611478422432104


Q ss_pred             ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC--
Q ss_conf             ------------420332459999999987378012063235641445578988626889889989985303--2357--
Q gi|254780545|r  221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS--  284 (647)
Q Consensus       221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~--  284 (647)
                                  |||-++.  -.|.+.-|++--|||++|||+-           .|   ..++|-||.-||-  +..+  
T Consensus       639 hsvsrLiGaPPGYVGy~eG--G~LTe~Vrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlD~G~LtD~~G  702 (852)
T TIGR03345       639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK-----------AH---PDVLELFYQVFDKGVMEDGEG  702 (852)
T ss_pred             HHHHHHCCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCEEECCCC
T ss_conf             3687863899976674877--7210988809986888611300-----------28---899999998724677757999


Q ss_pred             -----CCEEEEEECCCC
Q ss_conf             -----782999962981
Q gi|254780545|r  285 -----EGVILIAATNRP  296 (647)
Q Consensus       285 -----~~v~vi~aTn~~  296 (647)
                           .+.|+|.++|--
T Consensus       703 r~vdF~NtIIImTSN~G  719 (852)
T TIGR03345       703 REIDFKNTVILLTSNAG  719 (852)
T ss_pred             CEEECEEEEEEECCCHH
T ss_conf             98845212999757244


No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.19  E-value=7.8e-10  Score=90.16  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf             4225698898528899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV  218 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~  218 (647)
                      .+..||+|...-+ -...+..+..+..+|      +   ++-+.+|||+|+|||.|++|+++++   +...++++..+|.
T Consensus         9 ~~~~tfdnFi~~~-N~~~~~~l~~~~~~~------~---~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~   78 (226)
T TIGR03420         9 PDDPTFDNFYAGG-NAELLAALRQLAAGK------G---DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCCHHCCCCCC-HHHHHHHHHHHHHCC------C---CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf             9987631236586-799999999876466------8---88699989999988999999999986269957995299987


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      ....        +.++.- ++ -.+++||+||.+..++...     .+=-.++|.+       ..+.+-++++++..|..
T Consensus        79 ~~~~--------~~l~~l-~~-~d~l~iDDi~~i~~~~~~e-----~~lF~l~N~~-------~~~~~~ilits~~~p~~  136 (226)
T TIGR03420        79 QADP--------EVLEGL-EQ-ADLVCLDDVEAIAGQPEWQ-----EALFHLYNRV-------REAGGRLLIAGRAAPAQ  136 (226)
T ss_pred             HHHH--------HHHHHC-CC-CCEEEEECHHHHCCCHHHH-----HHHHHHHHHH-------HHHCCEEEEECCCCHHH
T ss_conf             7539--------999727-44-8999996633343783789-----9999999999-------86528289867888232


Q ss_pred             CC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88---333165642--31410001347889999999854--887773211024544120379899999999987645532
Q gi|254780545|r  299 LD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       299 lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
                      ++   |-|.  -||  -..+.+..||.+.|..|++.++.  +..+++++ ++.++++.+ -+-..|..+++.-...+. .
T Consensus       137 l~~~l~dL~--SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~v-i~yl~~r~~-R~~~~l~~~l~~Ld~~sl-~  211 (226)
T TIGR03420       137 LPLRLPDLR--TRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL-A  211 (226)
T ss_pred             CCCCHHHHH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHHH-H
T ss_conf             032017799--99968856852799999999999999998599889999-999998637-989999999999999999-8


Q ss_pred             HCCCCCHHHHHHH
Q ss_conf             0242104568999
Q gi|254780545|r  372 NRRLVTMQEFEDA  384 (647)
Q Consensus       372 ~~~~i~~~dl~~A  384 (647)
                      .++.||..-+.++
T Consensus       212 ~kr~ITi~l~kev  224 (226)
T TIGR03420       212 AKRKITIPFVKEV  224 (226)
T ss_pred             HCCCCCHHHHHHH
T ss_conf             0899999999998


No 102
>KOG0989 consensus
Probab=99.18  E-value=1.2e-10  Score=96.07  Aligned_cols=178  Identities=27%  Similarity=0.308  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE------ECCCHHHHH
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970------205857886
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF------FTISGSDFV  218 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f------~~~~~s~~~  218 (647)
                      -+|+|++|++++++-|+-.+.           + +.---.|||||||||||-.|+|+|.+...|=      ....+|+..
T Consensus        33 kt~de~~gQe~vV~~L~~a~~-----------~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder  100 (346)
T KOG0989          33 KTFDELAGQEHVVQVLKNALL-----------R-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER  100 (346)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-----------H-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
T ss_conf             737765015999999999986-----------0-6886078668999867689999999855742355542431366001


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHC---------C-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             4442033245999999998737---------8-01206323564144557898862688988998998530323577829
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNS---------P-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVI  288 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~---------p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~  288 (647)
                      ..-  ++..++. -|++-....         | -||.+||-|++-          +|    +-+.|.--||.|....  .
T Consensus       101 Gis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----------sd----aq~aLrr~mE~~s~~t--r  161 (346)
T KOG0989         101 GIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT----------SD----AQAALRRTMEDFSRTT--R  161 (346)
T ss_pred             CCC--CHHHHHC-CHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH----------HH----HHHHHHHHHHCCCCCE--E
T ss_conf             431--0066523-79987502556567889863289974164530----------99----9999999986254665--9


Q ss_pred             EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             9996298100883331656423141000134788999999985-48877732110245441203798999999
Q gi|254780545|r  289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS-RNVPLAPNVILKTIARGTPGFSGADLRNL  360 (647)
Q Consensus       289 vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~-~~~~~~~~~d~~~la~~t~g~sgAdi~~~  360 (647)
                      .|--||.++.|-+-|.-  |--+--+=+++|..--...-.+.. .+.+++++ -++.+|+.    |+.||...
T Consensus       162 FiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~-al~~I~~~----S~GdLR~A  227 (346)
T KOG0989         162 FILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDD-ALKLIAKI----SDGDLRRA  227 (346)
T ss_pred             EEEECCCHHHCCHHHHH--HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHH----CCCCHHHH
T ss_conf             99973885647728774--677712887644789999999988858997878-99999997----38728999


No 103
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.18  E-value=8.5e-10  Score=89.89  Aligned_cols=101  Identities=25%  Similarity=0.311  Sum_probs=66.7

Q ss_pred             EEEEEECCCC--CCCCHHHCC-CCCCCCEEEEC--HHH-HHHHHHHHHHHH---C---CCC-CCCC-C-CHHHHHHHHHC
Q ss_conf             2999962981--008833316-56423141000--134-788999999985---4---887-7732-1-10245441203
Q gi|254780545|r  287 VILIAATNRP--DVLDAALLR-PGRFDRQITVP--NPD-IVGREHILMVHS---R---NVP-LAPN-V-ILKTIARGTPG  351 (647)
Q Consensus       287 v~vi~aTn~~--~~lD~al~R-pgRfd~~i~~~--~P~-~~~r~~i~~~~~---~---~~~-~~~~-~-d~~~la~~t~g  351 (647)
                      .++|+|+|.-  +.|.|||+- ---|...+++.  +|| .+-|..+.+.-.   +   +.| ++.+ | -+-..|++..|
T Consensus       278 f~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII~eA~R~AG  357 (637)
T PRK13765        278 FIMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEIIREARRRAG  357 (637)
T ss_pred             EEEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             69999537276664399888651047749982356778788999999999999974388899998999999999997405


Q ss_pred             CCH------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             798------999999999876455320242104568999750
Q gi|254780545|r  352 FSG------ADLRNLVNEAALMAARRNRRLVTMQEFEDAKDK  387 (647)
Q Consensus       352 ~sg------Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~r  387 (647)
                      -.+      .+|.+|++||.-.|..++++.|+.+|+.+|++.
T Consensus       358 ~k~kLTLrLReL~~LIReAgdiA~~eg~~~Vta~hV~~A~~~  399 (637)
T PRK13765        358 RKGHLTLKLRDLGGLVRVAGDIARSEGADLVTAEHVLEAKKI  399 (637)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             456630528988749999889999759996649999999998


No 104
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232   Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.17  E-value=4.5e-10  Score=91.88  Aligned_cols=224  Identities=25%  Similarity=0.403  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCC---CCC----CEECCCHH
Q ss_conf             69889852889999999998743356766420123331---100378742588899997424---699----70205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGE---ANV----PFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e---~~~----~f~~~~~s  215 (647)
                      .++...|++++|.-++||..|..=.++=.+-|.+..+.   ++|-|-||||||.-||-+|.=   .||    .++-+-=.
T Consensus         4 EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERA   83 (261)
T TIGR02881         4 ELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERA   83 (261)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             35640488899999999999999988887510114884478774278668438999999999853375678867887622


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEEEECC
Q ss_conf             88644420332459999999987378012063235641445578988626889889989985303235778-29999629
Q gi|254780545|r  216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG-VILIAATN  294 (647)
Q Consensus       216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~-v~vi~aTn  294 (647)
                      |+|--|.|-+|.|.|++-++|   ..-|+||||.=|++  ||..---|   +| .+-.|.-.|.  +.+.. |+++|  =
T Consensus        84 DLVGEYIGHTAqkTRe~~kkA---~GGvLFiDEAYSLa--RGGEKDFG---KE-AIDtLVK~mE--d~~~~lvlILA--G  150 (261)
T TIGR02881        84 DLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLA--RGGEKDFG---KE-AIDTLVKAME--DQRNELVLILA--G  150 (261)
T ss_pred             CCCCCCCCCHHHHHHHHHHHH---CCCCHHHHHHHHHH--CCCCCCCC---CH-HHHHHHHHHH--HCCCCEEEEEE--C
T ss_conf             212232030048999999986---38800557777761--48888766---20-8889999876--15698689970--8


Q ss_pred             CCCCCCHHHC-CCC---CCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCC--CH----HHHHHHHH-CCC-HHHHHHH
Q ss_conf             8100883331-656---423141000134788999999985488--777321--10----24544120-379-8999999
Q gi|254780545|r  295 RPDVLDAALL-RPG---RFDRQITVPNPDIVGREHILMVHSRNV--PLAPNV--IL----KTIARGTP-GFS-GADLRNL  360 (647)
Q Consensus       295 ~~~~lD~al~-Rpg---Rfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~--d~----~~la~~t~-g~s-gAdi~~~  360 (647)
                      +++-+|-=|- -||   ||--.|.||-=+.++-.+|.+.-++..  .++++-  .+    ......+. -|| |--|.|+
T Consensus       151 Y~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~  230 (261)
T TIGR02881       151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNI  230 (261)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             76899998620779777665054188998889999999998646422578899999999741244421005762012428


Q ss_pred             HHHHHHH-HHHH-HCCCCCHHHHH
Q ss_conf             9998764-5532-02421045689
Q gi|254780545|r  361 VNEAALM-AARR-NRRLVTMQEFE  382 (647)
Q Consensus       361 ~~eAa~~-a~r~-~~~~i~~~dl~  382 (647)
                      +-+|-.. |+|= ++..++.+||.
T Consensus       231 iE~AIR~QAvRlL~~~~~~k~dL~  254 (261)
T TIGR02881       231 IEKAIRRQAVRLLKKSDYSKEDLM  254 (261)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             899999999876434643589999


No 105
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16  E-value=6.1e-10  Score=90.95  Aligned_cols=196  Identities=26%  Similarity=0.367  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E------ECC
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997-------0------205
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F------FTI  212 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f------~~~  212 (647)
                      +|+||.|++++...|...+.           -.|+....||.||.|||||.+||-+|...+|.       +      ..+
T Consensus        14 ~f~e~vGQ~~v~~~L~nal~-----------~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i   82 (717)
T PRK08853         14 QFKEVVGQSHVLTALENALA-----------HNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEI   82 (717)
T ss_pred             CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             56551385999999999997-----------0997405761088988898999999998678999999978887026767


Q ss_pred             CH---HHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             85---7886444203324-----59999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r  213 SG---SDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       213 ~~---s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                      ..   -|++|+   .+|+     .+|+|.+.+ ..+|     -|.+|||..-+-              .+..|.||.-+.
T Consensus        83 ~~g~~~d~~Ei---DaAs~~~vdd~rel~~~~-~y~p~~~~yKvyiiDEvHmls--------------~~afnAlLKtlE  144 (717)
T PRK08853         83 DEGRFVDLLEI---DAASRTKVEDTRELLDNV-QYKPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE  144 (717)
T ss_pred             HCCCCCCEEEE---CCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC
T ss_conf             44787752454---056567889999999855-548877854799983054438--------------999999987603


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             3235778299996298100883331-656423141000134788999999985--4887773211024544120379899
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGAD  356 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAd  356 (647)
                        +..+.|++|-||-.|+.|...+| |.-||+.+- ++..+..++   |..-+  .++..+++ -+..||+...| |-.|
T Consensus       145 --EPP~hv~FilaTT~~~kip~TilSRc~~f~l~~-~~~~~i~~~---l~~i~~~E~i~~~~~-al~~ia~~a~G-s~Rd  216 (717)
T PRK08853        145 --EPPEYVKFLLATTDPQKLPVTILSRCLQFHLKP-ISVDQIHQQ---LDFVLDKEQVSAEAR-ALGLIAHAADG-SMRD  216 (717)
T ss_pred             --CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHH
T ss_conf             --787564899843873437388987654423268-999999999---999999759876999-99999997688-3778


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             99999998764553202421045689
Q gi|254780545|r  357 LRNLVNEAALMAARRNRRLVTMQEFE  382 (647)
Q Consensus       357 i~~~~~eAa~~a~r~~~~~i~~~dl~  382 (647)
                      --.|...|--    .+...|+.+++.
T Consensus       217 alsl~dqaia----~~~g~~~~~~v~  238 (717)
T PRK08853        217 ALSLTDQAIA----LGNGQVTTDIVS  238 (717)
T ss_pred             HHHHHHHHHH----HCCCCCCHHHHH
T ss_conf             8889999999----658971699999


No 106
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16  E-value=1e-09  Score=89.25  Aligned_cols=215  Identities=26%  Similarity=0.356  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-----EECCCHH---------
Q ss_conf             98528899999999987433567664201233311003787425888999974246997-----0205857---------
Q gi|254780545|r  150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-----FFTISGS---------  215 (647)
Q Consensus       150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-----f~~~~~s---------  215 (647)
                      +-+-|+-.+.+.   .+|...     +-...|..+++|||||||||..++-++.+..-+     ++++.+-         
T Consensus        19 l~~Re~ei~~l~---~~l~~~-----~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~   90 (366)
T COG1474          19 LPHREEEINQLA---SFLAPA-----LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL   90 (366)
T ss_pred             CCCHHHHHHHHH---HHHHHH-----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
T ss_conf             103488999999---999998-----558998607998899987328999999999733156757999513078787999


Q ss_pred             -HHHHHH-----HHCCHHH-HHHHHHHHH-HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             -886444-----2033245-999999998-73780120632356414455789886268898899899853032357782
Q gi|254780545|r  216 -DFVELF-----VGVGASR-VRDMFEQAK-NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGV  287 (647)
Q Consensus       216 -~~~~~~-----~g~g~~~-vr~lf~~a~-~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v  287 (647)
                       .+..++     .|..... ...+++.-. ...+.||-+||+|.+..+.+           .+|-+|+-..+-+  ...|
T Consensus        91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v  157 (366)
T COG1474          91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKV  157 (366)
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC-----------CHHHHEECCCCCC--CEEE
T ss_conf             99999826899767632689999999777418759999764765415464-----------1455111247767--5379


Q ss_pred             EEEEECCCC---CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHCCCHHHHH--
Q ss_conf             999962981---0088333165642314100013478899999998548----8777321102454412037989999--
Q gi|254780545|r  288 ILIAATNRP---DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN----VPLAPNVILKTIARGTPGFSGADLR--  358 (647)
Q Consensus       288 ~vi~aTn~~---~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~----~~~~~~~d~~~la~~t~g~sgAdi~--  358 (647)
                      .+|+.+|-.   +.+||-+...=. .++|.|++=+.++-..|++--.+.    ..+++++ ++.+|....--+| |..  
T Consensus       158 ~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DAR~a  234 (366)
T COG1474         158 SIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DARKA  234 (366)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHCCC-CHHHH
T ss_conf             999973548899987566765068-76355289898999999999998540468748039-9999998876186-47760


Q ss_pred             -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             -999998764553202421045689997501
Q gi|254780545|r  359 -NLVNEAALMAARRNRRLVTMQEFEDAKDKI  388 (647)
Q Consensus       359 -~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv  388 (647)
                       .+|+.|+-.|-+++...++.+|...|.+.+
T Consensus       235 idilr~A~eiAe~~~~~~v~~~~v~~a~~~~  265 (366)
T COG1474         235 IDILRRAGEIAEREGSRKVSEDHVREAQEEI  265 (366)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             8999999998654078853700478899875


No 107
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14  E-value=6e-09  Score=83.73  Aligned_cols=225  Identities=20%  Similarity=0.264  Sum_probs=138.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCH
Q ss_conf             1242256988985288999999999874335676642012333110037874258889999742469-----97020585
Q gi|254780545|r  140 GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISG  214 (647)
Q Consensus       140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~  214 (647)
                      .-.++-||++...-+.-.....-...+-.+|.+       +-.=++||||.|.|||.|++|+++++.     .-+++++.
T Consensus        79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s  151 (408)
T COG0593          79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS  151 (408)
T ss_pred             CCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCC-------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf             689888554220477449999999998756688-------6895799879999789999999999986299864885048


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                      ++|...||-..-..=-+-|+.--  +--.+.||+|+.++.+...     ..|--.|.|.|.       .+.+-+|+.+-.
T Consensus       152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~-------~~~kqIvltsdr  217 (408)
T COG0593         152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALL-------ENGKQIVLTSDR  217 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--CCCEEEECHHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCC
T ss_conf             99899999998850488888764--2673555138675677157-----999999999888-------508879997078


Q ss_pred             CCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             8100---8833316564231--410001347889999999854--88777321102454412037989999999998764
Q gi|254780545|r  295 RPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALM  367 (647)
Q Consensus       295 ~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~  367 (647)
                      -|..   ++|-|.-  ||+.  .+.+..||.+.|.+||+....  +..+.+++ +..+|.+.. -+..+|+..++.-...
T Consensus       218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~-~nvReLegaL~~l~~~  293 (408)
T COG0593         218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD-RNVRELEGALNRLDAF  293 (408)
T ss_pred             CCHHHCCCCHHHHH--HHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf             83221103588998--9863057752798889999999999986588888799-999999700-3099999999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             55320242104568999750136
Q gi|254780545|r  368 AARRNRRLVTMQEFEDAKDKILM  390 (647)
Q Consensus       368 a~r~~~~~i~~~dl~~A~~rv~~  390 (647)
                      +.-.+ ..||.....+++.-+..
T Consensus       294 a~~~~-~~iTi~~v~e~L~~~~~  315 (408)
T COG0593         294 ALFTK-RAITIDLVKEILKDLLR  315 (408)
T ss_pred             HHHCC-CCCCHHHHHHHHHHHHH
T ss_conf             98538-75769999999998640


No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14  E-value=9.4e-10  Score=89.57  Aligned_cols=205  Identities=28%  Similarity=0.393  Sum_probs=131.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-----
Q ss_conf             000011242256988985288999999999874335676642012333110037874258889999742469970-----
Q gi|254780545|r  135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF-----  209 (647)
Q Consensus       135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f-----  209 (647)
                      |+.|.|    .+|+||.|++.+...|+-.+.           ..|++...||.||-|||||-.||-+|...+|--     
T Consensus        14 ~~k~rp----~~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~   78 (600)
T PRK09111         14 ARKYRP----QTFDDLIGQEAMVRTLRNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVG   78 (600)
T ss_pred             EECCCC----CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             210179----877663385999999999997-----------29842047645789878999999999996698876668


Q ss_pred             ---EC--CCH-----------HHHHHHHHHCCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCC
Q ss_conf             ---20--585-----------7886444203324-----599999999873780-----120632356414455789886
Q gi|254780545|r  210 ---FT--ISG-----------SDFVELFVGVGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       210 ---~~--~~~-----------s~~~~~~~g~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~  263 (647)
                         ..  -.+           .|++|+   .+|+     -||+|-+.+ ..+|.     |..|||..-+           
T Consensus        79 ~~~~~~c~~c~~c~~i~~~~~~d~~e~---daas~~~v~~~r~~~~~~-~~~p~~~~~kv~iidevhml-----------  143 (600)
T PRK09111         79 GPTIDPCGVGEHCQAIMEGRHVDVIEM---DAASHTGVDDIREIIESV-RYRPVSARYKVYIIDEVHML-----------  143 (600)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCEEEE---ECCCCCCHHHHHHHHHHH-CCCCCCCCEEEEEEECCCCC-----------
T ss_conf             998898998865898866899875885---155457888999999860-53887775469996001105-----------


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf             26889889989985303235778299996298100883331-65642314100013478899-99999854887773211
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVI  341 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d  341 (647)
                         ..+..|.||--+.  +....|..|-||--|..+..-++ |--|||.+- ++..+...+. .|++  ..+...+++ -
T Consensus       144 ---s~~afnallktle--epp~~~~fi~att~~~k~p~ti~src~~f~~~~-~~~~~~~~~l~~i~~--~e~~~~~~~-a  214 (600)
T PRK09111        144 ---STAAFNALLKTLE--EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRR-IEAEVLAAHLARIAE--KEGVEVEPD-A  214 (600)
T ss_pred             ---CHHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHHHEECCCC-CCHHHHHHHHHHHHH--HCCCCCCHH-H
T ss_conf             ---7999999998762--598654999962853437589985441201057-999999999999998--607686677-9


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             024544120379899999999987645532024210456899
Q gi|254780545|r  342 LKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       342 ~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      +..||+...| |=.|--.|+.+|..    .+...|+.+++.+
T Consensus       215 l~~ia~~a~G-S~RDaLSlLDQai~----~~~~~i~~~~v~~  251 (600)
T PRK09111        215 LALIARAAEG-SVRDGLSLLDQAIA----HGAGEVTAEQVRD  251 (600)
T ss_pred             HHHHHHHCCC-CCCHHHHHHHHHHH----CCCCCCCHHHHHH
T ss_conf             9999997489-84218999999997----2798756999999


No 109
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13  E-value=6.2e-11  Score=98.10  Aligned_cols=144  Identities=26%  Similarity=0.388  Sum_probs=93.0

Q ss_pred             CCCCCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHH-HHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEEC
Q ss_conf             00011242256988-985288999999999-874335676-64201233-311003787425888999974246997020
Q gi|254780545|r  136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCDPQKF-KRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFT  211 (647)
Q Consensus       136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~~~~~-~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~  211 (647)
                      ..-.|.+.+--.++ |.|+|.+|.-|.-.| ...|.-... .+-....- ..|||.||.|+||||||+.+|.-.+|||--
T Consensus        48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai  127 (408)
T COG1219          48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI  127 (408)
T ss_pred             CCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             59986999998652432625431034664106889986048877635320317998889975779999999984898475


Q ss_pred             CCHHHHHH-HHHHCCHHHH-HHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf             58578864-4420332459-999-----9999873780120632356414455789886268-898899899853032
Q gi|254780545|r  212 ISGSDFVE-LFVGVGASRV-RDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF  281 (647)
Q Consensus       212 ~~~s~~~~-~~~g~g~~~v-r~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~  281 (647)
                      ..++.+-| -|||+--.+| -.|     |+-+|+. .-||||||||-|+++...-+. ..|- .|-+-..||--|.|-
T Consensus       128 ADATtLTEAGYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSen~SI-TRDVSGEGVQQALLKiiEGT  203 (408)
T COG1219         128 ADATTLTEAGYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT  203 (408)
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-CCEEEEECHHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHCCC
T ss_conf             14441210663550089999999987645888882-885998510254205789872-34367358999999997075


No 110
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.10  E-value=2.5e-11  Score=100.96  Aligned_cols=110  Identities=29%  Similarity=0.330  Sum_probs=69.6

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH--HHHHHCC---HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf             110037874258889999742469970205857886--4442033---24599999999873780120632356414455
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV--ELFVGVG---ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG  257 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~--~~~~g~g---~~~vr~lf~~a~~~~p~iifiDeida~~~~r~  257 (647)
                      .|||+||||||||.+|+++|...+.+|+.+++++-.  +-.+|..   ...-.-.|.... ....|+|+|||+-.-    
T Consensus         1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~-l~~~vl~lDEin~a~----   75 (131)
T pfam07726         1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGP-IFANVLLADEINRAP----   75 (131)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCC-CCCCCEEEEHHHCCC----
T ss_conf             987898998769999999999959981688833776700036845423787408984573-103705640120399----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEECCCCCC-----CCHHHCCCCCC
Q ss_conf             78988626889889989985303---------235778299996298100-----88333165642
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLVEMDG---------FESSEGVILIAATNRPDV-----LDAALLRPGRF  309 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~~mdg---------~~~~~~v~vi~aTn~~~~-----lD~al~RpgRf  309 (647)
                                ..++|.||.-|+-         +.-..+..||||.|..+.     |++|++-  ||
T Consensus        76 ----------~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~NP~e~~G~~~L~~al~d--RF  129 (131)
T pfam07726        76 ----------PKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLD--RF  129 (131)
T ss_pred             ----------HHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCHHHHC--CC
T ss_conf             ----------8999999976326499779988527998499971698755576449988965--61


No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.09  E-value=3e-09  Score=85.91  Aligned_cols=175  Identities=29%  Similarity=0.436  Sum_probs=118.7

Q ss_pred             CCCHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             242256988-98528899999999-------98743356766420123---331-1003787425888999974246997
Q gi|254780545|r  141 NVGSVTFKD-VAGVDEAKEDLQEI-------VDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       141 ~~~~v~f~d-v~g~~~~k~~~~~~-------v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~~~~  208 (647)
                      +...|.++| -.=+.+.+.+|+..       |+-|-..=|+++-|.+-   |.| .||+||.|.|||=+||.+|.+.||+
T Consensus       475 P~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~  554 (774)
T TIGR02639       475 PVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVH  554 (774)
T ss_pred             CCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf             94154264479887204476301315158999999999999874247788816888864798962578899999970820


Q ss_pred             EECCCHHHHHHH------------HHH--CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             020585788644------------420--332459999999987378012063235641445578988626889889989
Q gi|254780545|r  209 FFTISGSDFVEL------------FVG--VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL  274 (647)
Q Consensus       209 f~~~~~s~~~~~------------~~g--~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l  274 (647)
                      |+-...||.+|+            |||  +|-    -|=+.-|++=-||+.+|||.=           .|   .=..|=|
T Consensus       555 l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGG----LLT~AvrK~P~cVLLLDEIEK-----------AH---pDI~NIL  616 (774)
T TIGR02639       555 LLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGG----LLTDAVRKHPHCVLLLDEIEK-----------AH---PDIYNIL  616 (774)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHCCCCCEEEHHHHHHH-----------HH---HHHHHHH
T ss_conf             01046504468999987416888851316777----212233128853542346666-----------31---3366678


Q ss_pred             HHHHCCC--CCCC-------CEEEEEECCC-----------------CCCCCHHHCC---C---CCCCCEEEECHHHHHH
Q ss_conf             9853032--3577-------8299996298-----------------1008833316---5---6423141000134788
Q gi|254780545|r  275 LVEMDGF--ESSE-------GVILIAATNR-----------------PDVLDAALLR---P---GRFDRQITVPNPDIVG  322 (647)
Q Consensus       275 l~~mdg~--~~~~-------~v~vi~aTn~-----------------~~~lD~al~R---p---gRfd~~i~~~~P~~~~  322 (647)
                      |.=||--  ..|.       +||+|.+||-                 -+..+.|+-+   |   =|+|-.|.|+.-+.+-
T Consensus       617 LQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~  696 (774)
T TIGR02639       617 LQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEV  696 (774)
T ss_pred             HHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHH
T ss_conf             76633543405888576311368884037001023677644255541233488897315874201334644169988999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999998548
Q gi|254780545|r  323 REHILMVHSRN  333 (647)
Q Consensus       323 r~~i~~~~~~~  333 (647)
                      -..|.+..+..
T Consensus       697 ~~~i~~K~l~e  707 (774)
T TIGR02639       697 AEKIVKKFLDE  707 (774)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 112
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.09  E-value=1.3e-09  Score=88.63  Aligned_cols=47  Identities=49%  Similarity=0.745  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             2569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r  144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      ...|.||.|++.+|..|....              ---+++||+|||||||||||+-+.+=
T Consensus       175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~l  221 (490)
T COG0606         175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGL  221 (490)
T ss_pred             CCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             766666438499999999998--------------43886787569988656764231025


No 113
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.08  E-value=1.1e-10  Score=96.19  Aligned_cols=173  Identities=24%  Similarity=0.365  Sum_probs=111.8

Q ss_pred             CCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHH------HHHHHHH----------HCCCC-CCEEECCCCCHHHHHHHH
Q ss_conf             11242256988-985288999999999-87433------5676642----------01233-311003787425888999
Q gi|254780545|r  139 SGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCD------PQKFKRL----------GGRIP-HGVLLVGPPGTGKTLLAR  199 (647)
Q Consensus       139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~------~~~~~~~----------g~~~p-~g~ll~GppGtGKTlla~  199 (647)
                      .|.+.+--.|| |.|+|+||.-|.=.| ...|.      -.++..-          -+.+- ..|||.||-|.||||||+
T Consensus        91 ~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAq  170 (452)
T TIGR00382        91 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQ  170 (452)
T ss_pred             CCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf             82799997213612310105254324112466653243045558840002354444433300662454688852689999


Q ss_pred             HHHCCCCCCEECCCHHHHHH-HHHHCCHHH-HHHHHHHHH----HHCCHHEEHHHHHHHHCCCCCCC----CCCCHHHHH
Q ss_conf             97424699702058578864-442033245-999999998----73780120632356414455789----886268898
Q gi|254780545|r  200 AVAGEANVPFFTISGSDFVE-LFVGVGASR-VRDMFEQAK----NNSPCIVFVDEIDAVGRHRGIGL----GGGNDEREQ  269 (647)
Q Consensus       200 a~a~e~~~~f~~~~~s~~~~-~~~g~g~~~-vr~lf~~a~----~~~p~iifiDeida~~~~r~~~~----~~~~~e~~~  269 (647)
                      .+|...+|||--..++.+-| -|||+---+ +..|.+.|-    +..--||||||||=|+|+....+    .+|  |.  
T Consensus       171 TLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSG--EG--  246 (452)
T TIGR00382       171 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSG--EG--  246 (452)
T ss_pred             HHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECC--CH--
T ss_conf             99987388742111110200664242288999999874145524527850898422310121577801122175--54--


Q ss_pred             HHHHHHHHHCCCCCC-------------------CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHH
Q ss_conf             899899853032357-------------------7829999629810088333165642314100013
Q gi|254780545|r  270 TLNQLLVEMDGFESS-------------------EGVILIAATNRPDVLDAALLRPGRFDRQITVPNP  318 (647)
Q Consensus       270 ~ln~ll~~mdg~~~~-------------------~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P  318 (647)
                      +=-.||--+.|--.+                   .+|+.||+=- =+-||.-+-+  |+.....+|.-
T Consensus       247 VQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGA-F~GL~~iI~~--R~~~~~~iGF~  311 (452)
T TIGR00382       247 VQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGA-FVGLEKIIKK--RTEKKSSIGFG  311 (452)
T ss_pred             HHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCH-HHHHHHHHHH--HHCCCCCCCCC
T ss_conf             99999987603234317544886886576886476400110543-4448999988--74555333545


No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07  E-value=2.4e-09  Score=86.67  Aligned_cols=186  Identities=28%  Similarity=0.470  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EE------C
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997-------02------0
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FF------T  211 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~------~  211 (647)
                      -+|++|.|++++...|...++           ..|+....||+||.|||||-+||-+|...+|.       .=      .
T Consensus        13 ~~f~e~vGQ~~v~~~l~nal~-----------~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~   81 (816)
T PRK07003         13 KDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE   81 (816)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             857662384999999999997-----------098631475117898888899999999867899999897877555787


Q ss_pred             CC-H--HHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             58-5--78864442--0332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r  212 IS-G--SDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       212 ~~-~--s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                      |. |  .|++|+=.  .-|-..+|+|.+.+ ..+|     -|.+|||..-+-              ....|.||.-+.  
T Consensus        82 i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~-~y~p~~~r~KvyiiDEvHmls--------------~~afnalLKtlE--  144 (816)
T PRK07003         82 IDEGRFVDYVEMDAASNRGVDEMAALLERA-VYAPVDARFKVYMIDEVHMLT--------------NHAFNAMLKTLE--  144 (816)
T ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--
T ss_conf             755887754786355435768999999862-247866744799984154339--------------999999998403--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
                      +..+.|++|-||..|+.|...+| |--||+.+- ++.-+...+   |..-+  .++..+++ -|..||+...| |=.|--
T Consensus       145 epP~hv~FilaTTd~~k~p~tilSRc~~f~l~~-~~~~~i~~~---l~~i~~~E~i~~e~~-al~lia~~a~G-smRDal  218 (816)
T PRK07003        145 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ-MPAGHIVSH---LERILGEERIAFEPQ-ALRLLARAAQG-SMRDAL  218 (816)
T ss_pred             CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHH
T ss_conf             798664899955880115288987776522367-999999999---999999829977999-99999997677-378888


Q ss_pred             HHHHHH
Q ss_conf             999998
Q gi|254780545|r  359 NLVNEA  364 (647)
Q Consensus       359 ~~~~eA  364 (647)
                      .|...|
T Consensus       219 sl~dQa  224 (816)
T PRK07003        219 SLTDQA  224 (816)
T ss_pred             HHHHHH
T ss_conf             599999


No 115
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.07  E-value=8.1e-09  Score=82.79  Aligned_cols=187  Identities=30%  Similarity=0.432  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EECC-----
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997-------0205-----
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FFTI-----  212 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~~~-----  212 (647)
                      .+|+||.|++.+...|+..+..           .|++.+.||.||-|||||-+||-+|...++.       +-..     
T Consensus        13 ~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~   81 (515)
T COG2812          13 KTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE   81 (515)
T ss_pred             CCHHHHCCCHHHHHHHHHHHHH-----------CCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             0077763648999999999980-----------84233365137777671049999999956889877772253166686


Q ss_pred             ----CHHHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             ----857886444203324-----59999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r  213 ----SGSDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM  278 (647)
Q Consensus       213 ----~~s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m  278 (647)
                          +..|.+|+   .+|+     -||++-+++ ..+|     =|..|||..-+              ..+.-|.||--+
T Consensus        82 I~~g~~~DviEi---DaASn~gVddiR~i~e~v-~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTL  143 (515)
T COG2812          82 INEGSLIDVIEI---DAASNTGVDDIREIIEKV-NYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTL  143 (515)
T ss_pred             HHCCCCCCCHHH---HHHHCCCHHHHHHHHHHH-CCCCCCCCCEEEEEECHHHH--------------HHHHHHHHHCCC
T ss_conf             514886410113---644454867999999872-46886666418998318764--------------378888875111


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             03235778299996298100883331-656423141000134788999999985--488777321102454412037989
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGA  355 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgA  355 (647)
                      .  +....|+.|-||--|+.+.+-++ |--|||.+-   +|.. .-..-|+..+  +++..+++ -+..+|+...| |-.
T Consensus       144 E--EPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkr---i~~~-~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R  215 (515)
T COG2812         144 E--EPPSHVKFILATTEPQKIPNTILSRCQRFDFKR---LDLE-EIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR  215 (515)
T ss_pred             C--CCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCC---CCHH-HHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHH
T ss_conf             3--686674899853886768404552122022257---9999-99999999987448754799-99999998289-745


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999987645
Q gi|254780545|r  356 DLRNLVNEAALMA  368 (647)
Q Consensus       356 di~~~~~eAa~~a  368 (647)
                      |..+++..|....
T Consensus       216 DalslLDq~i~~~  228 (515)
T COG2812         216 DALSLLDQAIAFG  228 (515)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             6777899999706


No 116
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07  E-value=7.4e-10  Score=90.33  Aligned_cols=183  Identities=31%  Similarity=0.475  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------------CC
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702-------------05
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------------TI  212 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------------~~  212 (647)
                      +|+||.|++++...|...++-           .|++...||.||.|||||-+||.+|...+|.-=             .+
T Consensus        14 ~f~~~vGQ~~v~~~l~na~~~-----------~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i   82 (643)
T PRK07994         14 TFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   82 (643)
T ss_pred             CHHHHCCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             666653879999999999982-----------986634874589988888999999999679999999978767768988


Q ss_pred             CHH---HHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             857---886444203324-----59999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r  213 SGS---DFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       213 ~~s---~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                      ...   |++|+   .+|+     .+|+|.+.+ ..+|     -|..|||..-+-              .+..|.||.-+.
T Consensus        83 ~~g~~~d~~ei---daas~~~vd~~rel~~~~-~y~p~~~r~kvyiidEvhmls--------------~~afnalLKtlE  144 (643)
T PRK07994         83 EQGRFVDLIEI---DAASRTKVEDTRDLLDNV-QYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE  144 (643)
T ss_pred             HCCCCCCEEEE---ECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC
T ss_conf             65898875886---367778889999999844-668877853699972210158--------------999999998623


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             3235778299996298100883331-6564231410001347889-9999998548877732110245441203798999
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGR-EHILMVHSRNVPLAPNVILKTIARGTPGFSGADL  357 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r-~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi  357 (647)
                        +..+.|++|-||--|+.|.+-++ |--||+.+ .++..+...+ ..|+.  -.+++.+++ -+..||+...| |=.|-
T Consensus       145 --ePp~hv~filaTT~~~k~p~TilSRC~~f~~~-~~~~~~i~~~l~~i~~--~e~i~~~~~-al~~ia~~a~g-s~rda  217 (643)
T PRK07994        145 --EPPAHVKFLLATTDPQKLPVTILSRCLQFHLK-ALDVEQIRHQLEHILN--EEHIAHEPR-ALQLLARAADG-SLRDA  217 (643)
T ss_pred             --CCCHHCEEEEECCCHHHCCHHHHHHHHHEECC-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf             --78610089986077454847899777650016-6999999999999999--759987889-99999997478-65668


Q ss_pred             HHHHHHH
Q ss_conf             9999998
Q gi|254780545|r  358 RNLVNEA  364 (647)
Q Consensus       358 ~~~~~eA  364 (647)
                      -.|...|
T Consensus       218 lsl~dq~  224 (643)
T PRK07994        218 LSLTDQA  224 (643)
T ss_pred             HHHHHHH
T ss_conf             8899999


No 117
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07  E-value=2.6e-09  Score=86.41  Aligned_cols=181  Identities=19%  Similarity=0.248  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEE--CCC--
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469-------9702--058--
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFF--TIS--  213 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~--~~~--  213 (647)
                      -+|+++.|+++++..|...+.           ..++|.+.||+||+|+|||.+|.++|...-       .|--  ...  
T Consensus        20 r~~~~liGq~~~~~~L~~a~~-----------~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~   88 (352)
T PRK09112         20 SENNRLFGHEEARAFLAQAYR-----------EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPA   88 (352)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             446462786999999999998-----------499652465358998089999999999986699866686556788878


Q ss_pred             -----------HHHHHHHHH-----------HCCHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             -----------578864442-----------0332459999999987378----01206323564144557898862688
Q gi|254780545|r  214 -----------GSDFVELFV-----------GVGASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDER  267 (647)
Q Consensus       214 -----------~s~~~~~~~-----------g~g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~  267 (647)
                                 .++++...-           ..+...||++-+.....++    -|+.|||.|.+              .
T Consensus        89 ~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m--------------~  154 (352)
T PRK09112         89 SPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM--------------N  154 (352)
T ss_pred             CHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH--------------H
T ss_conf             77899997489999565534322021454335777999999998454886688069998187874--------------6


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             98899899853032357782999962981008833316564231410001347889999999854887773211024544
Q gi|254780545|r  268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIAR  347 (647)
Q Consensus       268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~  347 (647)
                      .+.-|.||--|.  +...++++|-.||.|+.|-|.++=  |- +++.+.+.+.+.-.+.|+.-..+.+...+-.+..++.
T Consensus       155 ~~aaNALLK~LE--EPp~~~~fiLit~~~~~ll~TI~S--RC-q~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~  229 (352)
T PRK09112        155 RNAANAILKTLE--EPPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQ  229 (352)
T ss_pred             HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--HC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             999999999853--489874899886997777689997--43-3214889398999999998751268998799999998


Q ss_pred             HHHCCCHH
Q ss_conf             12037989
Q gi|254780545|r  348 GTPGFSGA  355 (647)
Q Consensus       348 ~t~g~sgA  355 (647)
                      .+.|=-|.
T Consensus       230 ~a~GS~~~  237 (352)
T PRK09112        230 RSEGSVRK  237 (352)
T ss_pred             HHCCCHHH
T ss_conf             70899889


No 118
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06  E-value=7.9e-10  Score=90.10  Aligned_cols=185  Identities=28%  Similarity=0.444  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC-----CH------
Q ss_conf             6988985288999999999874335676642012333110037874258889999742469970205-----85------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI-----SG------  214 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-----~~------  214 (647)
                      +|+||.|+++++..|...+..           .|+....||+||.|+|||.+||.+|...+|.-=..     .+      
T Consensus        14 ~F~e~vGQ~~v~~~L~nal~~-----------~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i   82 (704)
T PRK08691         14 TFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI   82 (704)
T ss_pred             CHHHHCCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             475641869999999999981-----------997523750278987888999999999679999999978777767878


Q ss_pred             -----HHHHHHHH--HCCHHHHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             -----78864442--03324599999999873780-----1206323564144557898862688988998998530323
Q gi|254780545|r  215 -----SDFVELFV--GVGASRVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE  282 (647)
Q Consensus       215 -----s~~~~~~~--g~g~~~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~  282 (647)
                           .|++|+--  --|-..+|+|.+.+ ..+|.     |..|||..-+-              .+..|.||.-+.  +
T Consensus        83 ~~g~~~D~~EiDaAs~~~vdd~R~l~~~~-~y~P~~~~yKVyiiDEvhmLs--------------~~afNAlLKtLE--E  145 (704)
T PRK08691         83 DAGRYVDLLEIDAASNTGIDNIREVLENA-QYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLE--E  145 (704)
T ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--C
T ss_conf             55899874774245445889999999853-468867853599983154438--------------999999998614--7


Q ss_pred             CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             5778299996298100883331-656423141000134788999999985--4887773211024544120379899999
Q gi|254780545|r  283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRN  359 (647)
Q Consensus       283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~  359 (647)
                      ..+.|++|-||..|+.|-..+| |--||+.+- ++......+   |+.-+  .+++.+++ -+..||+...| |=.|--+
T Consensus       146 PP~~v~FilaTTdp~Klp~TIlSRC~~f~l~~-~~~~~i~~~---L~~i~~~E~i~~e~~-al~~ia~~a~G-s~RDals  219 (704)
T PRK08691        146 PPEHVKFILATTDPHKVPVTVLSRCLQFVLRN-MTAQQVADH---LAHVLDSEKIAYEPP-ALQLLGRAAAG-SMRDALS  219 (704)
T ss_pred             CCCCEEEEEECCCHHHCCHHHHHHHHHHCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHHH
T ss_conf             97560899854884647589998887710268-999999999---999999839856899-99999997578-5777988


Q ss_pred             HHHHH
Q ss_conf             99998
Q gi|254780545|r  360 LVNEA  364 (647)
Q Consensus       360 ~~~eA  364 (647)
                      |...|
T Consensus       220 lldQa  224 (704)
T PRK08691        220 LLDQA  224 (704)
T ss_pred             HHHHH
T ss_conf             99999


No 119
>KOG0741 consensus
Probab=99.06  E-value=5.5e-09  Score=84.01  Aligned_cols=139  Identities=30%  Similarity=0.469  Sum_probs=95.1

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf             333110037874258889999742469970205857886444203324----5999999998737801206323564144
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~  255 (647)
                      +-.-+||+||||+|||-||--+|-..+.||+.+-.++   -.+|.+++    .++..|+.|.+.--+||.+|+|.-+-.-
T Consensus       537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~  613 (744)
T KOG0741         537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY  613 (744)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH---HHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC
T ss_conf             6358998669988768899999752799847973778---7037466788999999888763386508998155656200


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCHH-HCCCCCCCCEEEECHHHH-HHHHHHHH
Q ss_conf             557898862688988998998530323577--82999962981008833-316564231410001347-88999999
Q gi|254780545|r  256 RGIGLGGGNDEREQTLNQLLVEMDGFESSE--GVILIAATNRPDVLDAA-LLRPGRFDRQITVPNPDI-VGREHILM  328 (647)
Q Consensus       256 r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~--~v~vi~aTn~~~~lD~a-l~RpgRfd~~i~~~~P~~-~~r~~i~~  328 (647)
                      -.-|.-    -..-+|..|++.+-- ....  ..+|+|+|.+-+.|-.- ++-  -|+-.|.||.-.. +.-.+++.
T Consensus       614 vpIGPR----fSN~vlQaL~VllK~-~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~  683 (744)
T KOG0741         614 VPIGPR----FSNLVLQALLVLLKK-QPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE  683 (744)
T ss_pred             CCCCCC----HHHHHHHHHHHHHCC-CCCCCCEEEEEECCCHHHHHHHCCHHH--HHHHEEECCCCCCHHHHHHHHH
T ss_conf             246840----357999999999524-898884599996240799999727787--5111054675686478999999


No 120
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05  E-value=7.6e-10  Score=90.22  Aligned_cols=130  Identities=33%  Similarity=0.482  Sum_probs=86.7

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEE----CCCHHHHHHHHH--HCCH----HHHHHHHHHHHHH
Q ss_conf             012333110037874258889999742469-------9702----058578864442--0332----4599999999873
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFF----TISGSDFVELFV--GVGA----SRVRDMFEQAKNN  239 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~----~~~~s~~~~~~~--g~g~----~~vr~lf~~a~~~  239 (647)
                      -.+..+-|+|.||||||||.+||.+|...+       +-++    +-|-.+|+.-|.  +.|-    -...++-++|+++
T Consensus       190 sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~  269 (459)
T PRK11331        190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ  269 (459)
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHC
T ss_conf             85458827965899988789999999997078877846899835886617876460568886132683699999999849


Q ss_pred             --CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--------------------CCCCCCEEEEEECCCCC
Q ss_conf             --78012063235641445578988626889889989985303--------------------23577829999629810
Q gi|254780545|r  240 --SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--------------------FESSEGVILIAATNRPD  297 (647)
Q Consensus       240 --~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--------------------~~~~~~v~vi~aTn~~~  297 (647)
                        .|+++.||||.     ||      |-  ++...+||+.|.-                    |.-.+++.+||+-|-.|
T Consensus       270 p~~~y~~iidein-----r~------~~--~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtad  336 (459)
T PRK11331        270 PEKKYVFIIDEIN-----RA------NL--SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD  336 (459)
T ss_pred             CCCCEEEEEEHHH-----CC------CH--HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCC
T ss_conf             8987699984320-----33------88--99999999996412567652256300368885334688659998503341


Q ss_pred             ----CCCHHHCCCCCCCCEEEECHHHHH
Q ss_conf             ----088333165642314100013478
Q gi|254780545|r  298 ----VLDAALLRPGRFDRQITVPNPDIV  321 (647)
Q Consensus       298 ----~lD~al~RpgRfd~~i~~~~P~~~  321 (647)
                          .+|-||.|  ||...=..|-++..
T Consensus       337 rs~~~~d~alrR--rf~f~~~~pd~d~~  362 (459)
T PRK11331        337 RSLAVVDYALRR--RFSFIDIEPGFDTP  362 (459)
T ss_pred             HHHHHHHHHHHH--HHCCEECCCCCCHH
T ss_conf             068878999986--50212158986605


No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.05  E-value=3.9e-09  Score=85.10  Aligned_cols=183  Identities=22%  Similarity=0.390  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE------------
Q ss_conf             69889852889999999998743----35676642012333110037874258889999742469970------------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLC----DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF------------  209 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~----~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f------------  209 (647)
                      .|+||.|+++++..|+..+.-=+    .+   .-...++....||+||+|+|||.+|+++|....++=            
T Consensus         3 ~f~~ivGQe~v~~~L~~A~~~~R~~~~~~---~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C   79 (395)
T PRK07940          3 VWDRLVGQDAVVAELRAAARAARADSAHS---AAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRAC   79 (395)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             70131592999999999998363434433---334687660376368998788999999999966999999999878789


Q ss_pred             ---ECCCHHHHHHHHH-H--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             ---2058578864442-0--332459999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r  210 ---FTISGSDFVELFV-G--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM  278 (647)
Q Consensus       210 ---~~~~~s~~~~~~~-g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m  278 (647)
                         ..-+.+|+....- |  .+-..||+|-+.+.. +|     -|+.|||.|.+              .++.-|.||--+
T Consensus        80 ~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~-~p~~~~~kv~ii~~a~~m--------------~~~a~NalLKtL  144 (395)
T PRK07940         80 RTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAAR-RPTTGRWRIVVIEDADRL--------------TERAANALLKAV  144 (395)
T ss_pred             HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEEECHHHH--------------CHHHHHHHHHHH
T ss_conf             99876899871898268776889999999999852-730379559998077874--------------899999999852


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             03235778299996298100883331656423141000134788999999985488777321102454412037989
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGA  355 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgA  355 (647)
                      .  +...++++|=+|+.|+.|=|-++=  |- ++|.+..|+.+.-.+.|.   ++...+++ ....+|..+.|--|-
T Consensus       145 E--EPp~~~~fiL~t~~~~~llpTI~S--Rc-q~~~f~~~~~~~i~~~L~---~~~gi~~~-~A~~aA~~s~G~igr  212 (395)
T PRK07940        145 E--EPPPRTVWLLCAPSVEDVLPTIRS--RC-RHVALRTPSVEAVADVLV---RRDGVDPE-TAQWAARASGGHIGR  212 (395)
T ss_pred             C--CCCCCEEEEEEECCHHHHHHHHHH--HH-EECCCCCCCHHHHHHHHH---HCCCCCHH-HHHHHHHHHCCCHHH
T ss_conf             1--788886999873997874468874--40-002379999999999998---70199989-999999980898899


No 122
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03  E-value=1.3e-09  Score=88.57  Aligned_cols=202  Identities=24%  Similarity=0.334  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE---------E-CCCH
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970---------2-0585
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF---------F-TISG  214 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f---------~-~~~~  214 (647)
                      .+|+||.|++++...|...++.           .|+....||.||-|+|||.+||-+|...+|--         - .-.+
T Consensus        13 ~~F~~~vGQ~~v~~~l~na~~~-----------~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C   81 (721)
T PRK12323         13 RDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQC   81 (721)
T ss_pred             CCHHHHCCCHHHHHHHHHHHHC-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             8665532859999999999971-----------99754475027998889899999999976899866789878878776


Q ss_pred             HHHHHHHHH--------CCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             788644420--------3324-----599999999873780-----1206323564144557898862688988998998
Q gi|254780545|r  215 SDFVELFVG--------VGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV  276 (647)
Q Consensus       215 s~~~~~~~g--------~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~  276 (647)
                      ....+.--|        .+|+     .+|+|.+.+ ..+|.     |..|||..-+-              ....|.||.
T Consensus        82 ~~C~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~-~y~P~~~~~KvyiiDevhmls--------------~~afnalLK  146 (721)
T PRK12323         82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDQA-VYAPTAGRFKVYMIDEVHMLT--------------NHAFNAMLK  146 (721)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECCCCCC--------------HHHHHHHHH
T ss_conf             54687756898764774367678889999999854-558876644699985400058--------------999999998


Q ss_pred             HHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf             5303235778299996298100883331-65642314100013478899-999998548877732110245441203798
Q gi|254780545|r  277 EMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVILKTIARGTPGFSG  354 (647)
Q Consensus       277 ~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d~~~la~~t~g~sg  354 (647)
                      -+.  +....|++|-||-.|+.|..-+| |--||+.+- ++..+...+. .|+.  -.++..++ --+..||+...| |=
T Consensus       147 tlE--ePP~hv~FilaTT~~~Kip~TilSRc~~f~~~~-~~~~~i~~~l~~i~~--~E~i~~~~-~al~~ia~~a~G-s~  219 (721)
T PRK12323        147 TLE--EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ-MPPGHIVSHLDAILG--QEGIGHEG-NALRLLAQAAHG-SM  219 (721)
T ss_pred             HHC--CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHH--HCCCCCCH-HHHHHHHHHCCC-CH
T ss_conf             401--797553899943863448588987765423478-999999999999999--83997799-999999997589-64


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             99999999987645532024210456899
Q gi|254780545|r  355 ADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       355 Adi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      .|--.|+..|--+.    ...|+.+++..
T Consensus       220 RDalslldQaia~~----~g~~~~~~v~~  244 (721)
T PRK12323        220 RDALSLTDQAIAYS----AGNVSEEAVRG  244 (721)
T ss_pred             HHHHHHHHHHHHHC----CCCCCHHHHHH
T ss_conf             76888999999865----89626999999


No 123
>KOG1942 consensus
Probab=99.03  E-value=1.6e-08  Score=80.72  Aligned_cols=72  Identities=39%  Similarity=0.556  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHC
Q ss_conf             988985288999999999874335676642012333110037874258889999742469--970205857886444203
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGV  224 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~  224 (647)
                      -+-+.|++++.+..--||+..|.    ++|   .-|++||.||||||||-||-|++.|.|  +||-.+.||+..+--|--
T Consensus        37 ~~g~vGQ~~AReAagiivdlik~----Kkm---aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK  109 (456)
T KOG1942          37 AAGFVGQENAREAAGIIVDLIKS----KKM---AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK  109 (456)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH----HHC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             44511526666551089999986----632---67279973699876568999999974799985666410555434557


Q ss_pred             C
Q ss_conf             3
Q gi|254780545|r  225 G  225 (647)
Q Consensus       225 g  225 (647)
                      +
T Consensus       110 T  110 (456)
T KOG1942         110 T  110 (456)
T ss_pred             H
T ss_conf             8


No 124
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01  E-value=1.3e-08  Score=81.32  Aligned_cols=90  Identities=33%  Similarity=0.551  Sum_probs=69.4

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             6988-985288999999999874335676642012-----3331100378742588899997424699702058578864
Q gi|254780545|r  146 TFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       146 ~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      ..+. |.|+++||..+.   --|+|..+-..+-..     .||.+|+.||.|.|||=+||-+|.=++.||+.+-++.|-|
T Consensus        12 eLd~yIIGQ~~AKkaVA---IALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTE   88 (444)
T COG1220          12 ELDRYIIGQDEAKKAVA---IALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTE   88 (444)
T ss_pred             HHHHHHCCCHHHHHHHH---HHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf             98767407177788999---999989999754787762257553588888887688999999998489837887642134


Q ss_pred             H-HHHC-CHHHHHHHHHHHHH
Q ss_conf             4-4203-32459999999987
Q gi|254780545|r  220 L-FVGV-GASRVRDMFEQAKN  238 (647)
Q Consensus       220 ~-~~g~-g~~~vr~lf~~a~~  238 (647)
                      . |||- -++-||||-+.|-+
T Consensus        89 VGYVGrDVesivRDLve~av~  109 (444)
T COG1220          89 VGYVGRDVESIIRDLVEIAVK  109 (444)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             032564589999999999999


No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.01  E-value=2e-08  Score=79.89  Aligned_cols=224  Identities=19%  Similarity=0.261  Sum_probs=129.1

Q ss_pred             CCCHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCH
Q ss_conf             242256988-9852889--99999999874335676642012333110037874258889999742469---97020585
Q gi|254780545|r  141 NVGSVTFKD-VAGVDEA--KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISG  214 (647)
Q Consensus       141 ~~~~v~f~d-v~g~~~~--k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~  214 (647)
                      -.|+-||+. |.|-...  -...+.+.   +.|..-   ++.+=.-+.+||++|.|||.|..|++++..   ...+++++
T Consensus       104 lNp~ytFd~FVvG~~N~lA~~aa~~va---~~~~~~---~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvta  177 (455)
T PRK12422        104 VDPEMTFANFLVTPENDLPFRILQEFA---KVSEQG---KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSS  177 (455)
T ss_pred             CCCCCCCCCEEECCCCHHHHHHHHHHH---HCCCCC---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             897783558331586099999999998---375535---88767875887899997899999999985379986999749


Q ss_pred             HHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             7886444203-324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r  215 SDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       215 s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
                      .+|..-|+.. ....+ +-|..--++. -++.||+|.-++++..+     .+|=-+|.|.|.       .+..-||+++.
T Consensus       178 e~F~~~~v~ai~~~~~-~~Fr~~yr~~-DvLLIDDIQfl~gK~~t-----qeEff~tfN~L~-------~~~KQIVitsD  243 (455)
T PRK12422        178 ELFTEHLVSAIRSGEM-QRFRSFYRNV-DALFIEDIEVFSGKGAT-----QEEFFHTFNSLH-------TEGKLIVISSS  243 (455)
T ss_pred             HHHHHHHHHHHHCCCH-HHHHHHHHCC-CEEEEEHHHHHHCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf             9999999999975889-9999999638-87763147887284889-----999999999999-------85996999689


Q ss_pred             CCCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98100---8833316564231--4100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r  294 NRPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL  366 (647)
Q Consensus       294 n~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~  366 (647)
                      -.|..   |++-|.-  ||..  .+.+..||.+.|.+||+..++.  ..+++++ ++.+|.... -+-.+|+..+|.-..
T Consensus       244 r~P~el~~l~~RL~S--Rf~~GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev-~~~iA~~i~-~niReLeGal~~l~~  319 (455)
T PRK12422        244 YAPGDLKAMEERLIS--RFEWGIAIPIHPLTREGLRSFLMRQAEQLSIRIEETA-LDFLIQALS-SNVKTLLHALTLLAK  319 (455)
T ss_pred             CCHHHHHHHHHHHHH--HHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             895765126899998--8637613216899989999999999987188884468-999999975-517999999999999


Q ss_pred             HHH--HHHCCCCCHHHHHHHHHHC
Q ss_conf             455--3202421045689997501
Q gi|254780545|r  367 MAA--RRNRRLVTMQEFEDAKDKI  388 (647)
Q Consensus       367 ~a~--r~~~~~i~~~dl~~A~~rv  388 (647)
                      .++  +.....++.+.+...+..+
T Consensus       320 ~~~~~~~~~~~i~~~~~~~~l~d~  343 (455)
T PRK12422        320 RVAYKKLSHQLLYEDDIKALLHDV  343 (455)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             999871568836499999999987


No 126
>PRK08903 hypothetical protein; Validated
Probab=99.01  E-value=5.2e-09  Score=84.21  Aligned_cols=170  Identities=16%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCC
Q ss_conf             1003787425888999974246---9970205857886444203324599999999873780120632356414455789
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL  260 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~  260 (647)
                      +.+|||+|+|||.|.+|+++++   +....+++..++.+            .|..++  ....+.||+||.+....    
T Consensus        45 l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~------------~~~~~~--~~d~l~iDDi~~i~~~~----  106 (227)
T PRK08903         45 FYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLL------------AFDFDP--RAELYAVDDVERLDDAQ----  106 (227)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH------------HHHHHH--CCCEEEEECCCCCCCHH----
T ss_conf             999899999888999999999980699749965110457------------774200--18989996411489569----


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC--CHHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC--CC
Q ss_conf             886268898899899853032357782999962981008--83331656423--1410001347889999999854--88
Q gi|254780545|r  261 GGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL--DAALLRPGRFD--RQITVPNPDIVGREHILMVHSR--NV  334 (647)
Q Consensus       261 ~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l--D~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~--~~  334 (647)
                         ..+--.++|.+.      +....++++++.--|..+  +|-|.=  ||-  -.+.+..||.+.|..||+.+..  +.
T Consensus       107 ---q~~lF~l~N~~~------~~~~~~ll~s~~~~p~~l~~~~DL~S--Rl~~gl~~~i~~pdde~~~~iL~~~a~~rgl  175 (227)
T PRK08903        107 ---QIALFNLFNRVR------AHGKTALLVAGPAAPLALDVREDLRT--RLGWGLVYEVKPLSDEDKIAALKAAAAERGL  175 (227)
T ss_pred             ---HHHHHHHHHHHH------HCCCCEEEECCCCCHHHCCCCHHHHH--HHHCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             ---999999999999------72994899718997120120089999--9938973899797999999999999996299


Q ss_pred             CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             777321102454412037989999999998764553202421045689997
Q gi|254780545|r  335 PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       335 ~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      .++++| ++.|+++.+ -+-..|..+++.--..+.. .++.||..-+.+.+
T Consensus       176 ~l~~~v-~~yl~~r~~-R~~~~L~~~l~~Ld~~sl~-~kr~iTi~lvkevL  223 (227)
T PRK08903        176 QLADEV-PDYLLTHFR-RDMPSLMALLDALDRYSLE-QKRAVTLPLLREML  223 (227)
T ss_pred             CCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHH
T ss_conf             998899-999999834-7899999999999999998-29999999999985


No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.00  E-value=3.5e-08  Score=78.23  Aligned_cols=209  Identities=16%  Similarity=0.200  Sum_probs=125.3

Q ss_pred             CCCHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHH
Q ss_conf             242256988-9852-889999999998743356766420123331100378742588899997424---69970205857
Q gi|254780545|r  141 NVGSVTFKD-VAGV-DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGS  215 (647)
Q Consensus       141 ~~~~v~f~d-v~g~-~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s  215 (647)
                      -.++.||++ |.|- ..+-..++.++   +.      -+...++=+.+|||+|+|||.|.+|++.+   .+.+.++++..
T Consensus        12 l~~~~tfdnFi~g~N~~a~~~~~~l~---~~------~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~   82 (234)
T PRK05642         12 LRDDATFANYYPGANAAALGYVERLC---EA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA   82 (234)
T ss_pred             CCCCCCHHCCCCCCCHHHHHHHHHHH---HC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf             99977730357187599999999987---60------6787788389988999988999999999998079967997899


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      ++.....        ++|+.-+. . .++.||.||.+..++..     ..+=-.+.|++.       .+..-++++++..
T Consensus        83 ~~~~~~~--------~~~~~l~~-~-d~l~IDDi~~i~g~~~~-----e~~lF~l~N~~~-------~~~~~llits~~~  140 (234)
T PRK05642         83 ELLDRGP--------ELLDNLEQ-Y-ELVCIDDLDVIAGKADW-----EEALFHLFNRLR-------DSGRRLLLAASKS  140 (234)
T ss_pred             HHHHHHH--------HHHHHHHH-C-CEEEEECHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCCC
T ss_conf             9875449--------99862422-7-98989364554688599-----999999999999-------8399599957879


Q ss_pred             CCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             10088---3331656423--1410001347889999999854--887773211024544120379899999999987645
Q gi|254780545|r  296 PDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA  368 (647)
Q Consensus       296 ~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a  368 (647)
                      |..++   |-|.=  ||-  -.+.+..||.+.|.+||+.+..  +..++++| ++.++++.. -+-.+|.++++.=-..+
T Consensus       141 P~~l~~~l~DL~S--Rl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v-~~yl~~r~~-R~~~~L~~~l~~Ld~~s  216 (234)
T PRK05642        141 PRELPVKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV-GHFILTRGT-RSMSALFDLLERLDQAS  216 (234)
T ss_pred             HHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf             5552300167999--9957812751489989999999999775468999899-999999735-88999999999999999


Q ss_pred             HHHHCCCCCHHHHHHHH
Q ss_conf             53202421045689997
Q gi|254780545|r  369 ARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       369 ~r~~~~~i~~~dl~~A~  385 (647)
                      . ..++.||..-+.+.+
T Consensus       217 l-~~kr~iTiplvk~vL  232 (234)
T PRK05642        217 L-QAQRKLTIPFLKETL  232 (234)
T ss_pred             H-HHCCCCCHHHHHHHH
T ss_conf             9-838999999999983


No 128
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.99  E-value=3.8e-08  Score=77.91  Aligned_cols=202  Identities=18%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH
Q ss_conf             4225698898-5-28899999999987433567664201233311003787425888999974246---99702058578
Q gi|254780545|r  142 VGSVTFKDVA-G-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD  216 (647)
Q Consensus       142 ~~~v~f~dv~-g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~  216 (647)
                      ..+.||++.. | ..++...++..+   .      .   .+..-+.+|||+|+|||.|..|+++++   +...++++...
T Consensus        16 ~~~~tfdnFi~g~n~~~~~al~~~~---~------~---~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~   83 (235)
T PRK08084         16 PDDETFASFYPGDNDSLLAALQNVL---R------Q---EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK   83 (235)
T ss_pred             CCCCCHHCCCCCCCHHHHHHHHHHH---H------C---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf             9976630234488699999999998---5------7---89876999899998889999999999970798579987798


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             8644420332459999999987378012063235641445578988626889----889989985303235778299996
Q gi|254780545|r  217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                      +.+        ..-++++..+  .-.+|.||.||.+..+.         +.+    .+.|.+.      +...+-+|+++
T Consensus        84 ~~~--------~~~~~l~~l~--~~dll~iDDi~~i~g~~---------~~ee~lF~l~N~~~------~~g~~~ll~ts  138 (235)
T PRK08084         84 RAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE---------LWEMAIFDLYNRIL------ESGKTRLLITG  138 (235)
T ss_pred             HHH--------HHHHHHHHHH--HCCEEEEECHHHHCCCH---------HHHHHHHHHHHHHH------HHCCCEEEEEC
T ss_conf             665--------1799998764--18989982745546997---------89999999999999------84896699967


Q ss_pred             CCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             29810088---3331656423--141000134788999999985--4887773211024544120379899999999987
Q gi|254780545|r  293 TNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA  365 (647)
Q Consensus       293 Tn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa  365 (647)
                      ...|..++   |-|.=  ||-  -.+.+..||.+.|.+||+...  ++..++++| ++.|+++.+ -+-.+|..+++.=-
T Consensus       139 ~~~P~~l~~~l~DL~S--Rl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V-~~yl~~~~~-R~~~~L~~~l~~Ld  214 (235)
T PRK08084        139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLD-REMRTLFMTLDQLD  214 (235)
T ss_pred             CCCHHHCCCCCHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf             9882430231288999--9956972785599989999999999997399999899-999998615-88999999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHH
Q ss_conf             64553202421045689997
Q gi|254780545|r  366 LMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       366 ~~a~r~~~~~i~~~dl~~A~  385 (647)
                      ..+ -..++.||..-+.+.+
T Consensus       215 ~~S-l~~kr~iTip~vkevL  233 (235)
T PRK08084        215 KAS-ITAQRKLTIPFVKEIL  233 (235)
T ss_pred             HHH-HHCCCCCCHHHHHHHH
T ss_conf             999-9819999999999996


No 129
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.97  E-value=2.1e-08  Score=79.84  Aligned_cols=163  Identities=22%  Similarity=0.362  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHH
Q ss_conf             225698898528899999999987433567664201233311003787425888999974246---99702058578864
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVE  219 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~  219 (647)
                      ..+.++|..|+|..|+.|.+      |-+.|.+  +.|...+||+|..||||+-|.||+.++-   |.-++.+.-.++..
T Consensus        23 d~v~l~~L~Gie~Qk~~l~~------NT~~F~~--G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~   94 (248)
T pfam05673        23 DPVDLDDLVGIDRQKEALLR------NTEQFLA--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGD   94 (248)
T ss_pred             CCCCHHHHCCHHHHHHHHHH------HHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf             98998893493999999999------9999980--898613676768989888999999998631495699987888721


Q ss_pred             HHHHCCHHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCEEEEEECCCC
Q ss_conf             4420332459999999987-3780120632356414455789886268898899899853032--357782999962981
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF--ESSEGVILIAATNRP  296 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~--~~~~~v~vi~aTn~~  296 (647)
                               +-+|++.-+. .-..|||+|++--          ..+|   ..-..|-+-|||=  ...++|++-|++||-
T Consensus        95 ---------Lp~i~~~l~~~~~kFIiF~DDLSF----------e~~d---~~yk~LKs~LeG~l~~~p~NvliYaTSNRR  152 (248)
T pfam05673        95 ---------LPDIVDLLRGRPYRFILFCDDLSF----------EEGE---SSYKALKSVLEGGLEARPDNVLIYATSNRR  152 (248)
T ss_pred             ---------HHHHHHHHHCCCCCEEEEECCCCC----------CCCC---HHHHHHHHHHCCCCCCCCCEEEEEEECCCH
T ss_conf             ---------999999996499757999635576----------7897---369999999657644688738999842700


Q ss_pred             CCCCHH--------HCCC-----------CCCCCEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             008833--------3165-----------64231410001347889999999854887
Q gi|254780545|r  297 DVLDAA--------LLRP-----------GRFDRQITVPNPDIVGREHILMVHSRNVP  335 (647)
Q Consensus       297 ~~lD~a--------l~Rp-----------gRfd~~i~~~~P~~~~r~~i~~~~~~~~~  335 (647)
                      ..+-.-        -+.|           -||--.|-+..||.+.=.+|.+.|++...
T Consensus       153 HLi~e~~~d~~~~~ei~~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~~  210 (248)
T pfam05673       153 HLIPEYMSDNEGDGEIHPGDAVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRGYAARLG  210 (248)
T ss_pred             HCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             0363332347774436725577745348986771785079999999999999999829


No 130
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.96  E-value=1.9e-09  Score=87.31  Aligned_cols=44  Identities=45%  Similarity=0.874  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             9889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      |+||.|++.+|..++ |-.          -|   ...+||+|||||||||+|+++++=
T Consensus         2 f~di~GQ~~akrAl~-iAa----------aG---~H~lLl~GpPG~GKTmlA~rl~~i   45 (207)
T pfam01078         2 LADVKGQEQAKRALE-IAA----------AG---GHNLLMIGPPGSGKTMLAKRLPGI   45 (207)
T ss_pred             HHHHCCCHHHHHHHH-HHH----------CC---CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             768638599999999-985----------47---875897889980299999763014


No 131
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.95  E-value=2.4e-08  Score=79.33  Aligned_cols=212  Identities=24%  Similarity=0.327  Sum_probs=123.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHH--
Q ss_conf             422569889852889999999998743356766420123331100378742588899997424---699702058578--
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSD--  216 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~--  216 (647)
                      ....+|+++.|.+..-..+.+..          +--++.+--||+.|.+||||++||+||-.+   ++-||+.+.+..  
T Consensus       319 ~~~~~f~~l~g~s~~~~~~~~~a----------~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~  388 (639)
T PRK11388        319 KVSHTFDHMPQDSPQMRRLIHFG----------RQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLP  388 (639)
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHH----------HHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             78888554467999999999999----------99968899689889898109999999995577789981898789898


Q ss_pred             ---HHHHHHH--CCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-
Q ss_conf             ---8644420--33245--99999999873780120632356414455789886268898899899853-----03235-
Q gi|254780545|r  217 ---FVELFVG--VGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES-  283 (647)
Q Consensus       217 ---~~~~~~g--~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~-  283 (647)
                         +.+-+.|  .|+.+  ....|++|   ..-.+|+|||+.+-.           +-..-|-.+|.+-     +|-.. 
T Consensus       389 ~~~~e~elfG~~~~~~~~g~~g~~e~A---~gGTL~LdeI~~lp~-----------~~Q~~LlrvL~~~~~~r~g~~~~~  454 (639)
T PRK11388        389 DEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSV-----------ELQSALLQVLKTGVITRLDSRRLI  454 (639)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHCC---CCCEEEECCHHHCCH-----------HHHHHHHHHHHCCCEEECCCCCEE
T ss_conf             467899873877676434668624403---698288467264999-----------999999999865937856999466


Q ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC--------CCCCCCCCHHH
Q ss_conf             7782999962981008833316564231-------4100013478899-99---9998548--------87773211024
Q gi|254780545|r  284 SEGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN--------VPLAPNVILKT  344 (647)
Q Consensus       284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~--------~~~~~~~d~~~  344 (647)
                      .-.|-+|+|||++-   +.+...|+|.+       .+.|.+|-..+|. +|   ++.++..        ..++++ -+..
T Consensus       455 ~vdvRiiaat~~~l---~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~-a~~~  530 (639)
T PRK11388        455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALAR  530 (639)
T ss_pred             EEEEEEEEECCHHH---HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHH
T ss_conf             64279997364508---9998749854999987674410573323253439999999999999971999998999-9999


Q ss_pred             HHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             5441203798--99999999987645532024210456899975
Q gi|254780545|r  345 IARGTPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAKD  386 (647)
Q Consensus       345 la~~t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~  386 (647)
                      |..  .-|-|  .+|+|++..|++.   .....|+.+||...+.
T Consensus       531 L~~--y~WPGNvrEL~nvl~~a~~~---~~~~~I~~~~Lp~~~~  569 (639)
T PRK11388        531 LVS--YRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHLF  569 (639)
T ss_pred             HHC--CCCCCHHHHHHHHHHHHHHH---CCCCCCCHHHCCHHHH
T ss_conf             972--89997999999999999983---8998426797808775


No 132
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94  E-value=4.9e-09  Score=84.39  Aligned_cols=201  Identities=25%  Similarity=0.418  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E------ECC
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997-------0------205
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F------FTI  212 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f------~~~  212 (647)
                      +|+||.|++++...|...++           ..|++...||.|+-|+|||-+||-+|...+|.       .      ..|
T Consensus        14 ~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i   82 (663)
T PRK08770         14 RFAELVGQEHVVRALSNALD-----------SGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDI   82 (663)
T ss_pred             CHHHHCCCHHHHHHHHHHHH-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             46452285999999999997-----------0997404762279988888999999998678999999978778778988


Q ss_pred             CHHHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             857886444203324-----59999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r  213 SGSDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE  282 (647)
Q Consensus       213 ~~s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~  282 (647)
                      ....|+..+-=.+|+     .+|+|.+.+ ..+|     -|..|||..-+-              ....|.||.-+.  +
T Consensus        83 ~~~~~~d~~e~daas~~~v~~~r~~~~~~-~~~p~~~~~kvy~idevhmls--------------~~~fna~lktle--e  145 (663)
T PRK08770         83 DAGRYIDLLEIDAASNTGVDDVREVIENA-QYMPSRGKFKVYLIDEVHMLS--------------KAAFNALLKTLE--E  145 (663)
T ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--C
T ss_conf             54898865886467658889999999844-358877743699970043328--------------999999987402--7


Q ss_pred             CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             5778299996298100883331-65642314100013478899-999998548877732110245441203798999999
Q gi|254780545|r  283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL  360 (647)
Q Consensus       283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~  360 (647)
                      ....|.+|-||..|+.|..-+| |--||+.+- ++..+...+. .|+.  -.++..++ --+..||+...| |=.|--+|
T Consensus       146 pp~~v~f~~att~~~k~p~t~~src~~f~~~~-~~~~~~~~~l~~~~~--~e~~~~~~-~~~~~~~~~~~g-s~rd~lsl  220 (663)
T PRK08770        146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKR-LDEDQIQGQMTRILA--AEQIESDP-SAIVQLSKAADG-SLRDGLSL  220 (663)
T ss_pred             CCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHH--HCCCCCCH-HHHHHHHHHCCC-CHHHHHHH
T ss_conf             86442899854873337489998887634377-999999999999999--83997699-999999997478-56778889


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             99987645532024210456899
Q gi|254780545|r  361 VNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       361 ~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      ...|--    .+...|+.+++..
T Consensus       221 ~~q~~~----~~~~~~~~~~v~~  239 (663)
T PRK08770        221 LDQAIA----YAGGALREDVVRT  239 (663)
T ss_pred             HHHHHH----HCCCCCCHHHHHH
T ss_conf             999998----6689768999999


No 133
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92  E-value=1.2e-08  Score=81.66  Aligned_cols=152  Identities=19%  Similarity=0.183  Sum_probs=100.5

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---------------
Q ss_conf             56988985-28899999999987433567664201233311003787425888999974246997---------------
Q gi|254780545|r  145 VTFKDVAG-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP---------------  208 (647)
Q Consensus       145 v~f~dv~g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~---------------  208 (647)
                      .+|+++.| ++.+++.|+..+.           ..++|...||+||+|+||+.+|+++|...-+.               
T Consensus         2 ~~~~~~~~~Q~~i~~~L~~~i~-----------~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~   70 (329)
T PRK08058          2 MTWEQLTALQPIVVKMLQNSIA-----------KNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK   70 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             9778888318999999999998-----------59966156557899988999999999997399999999887888999


Q ss_pred             -EECCCHHHHHHHHH-H--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             -02058578864442-0--332459999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r  209 -FFTISGSDFVELFV-G--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       209 -f~~~~~s~~~~~~~-g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                       |-.-+.+||....- |  .+-..||+|-+... .+|     =|+.||+.|.+-              .+.-|.||--+.
T Consensus        71 ~~~~~~HPD~~~i~p~~~~i~idqiR~L~~~~~-~~p~~g~~KV~II~~Ae~m~--------------~~AaNALLKtLE  135 (329)
T PRK08058         71 RIESGNHPDVHLVAPDGQSIKKDQIRYLKEEFS-KSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLE  135 (329)
T ss_pred             HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHC-CCCCCCCCEEEEEECHHHHC--------------HHHHHHHHHHHH
T ss_conf             987699997677456614077999999999964-38757886799973477629--------------999999999864


Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             3235778299996298100883331-656423141000134788999999
Q gi|254780545|r  280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
                        ++..++++|=.|+.++.|=|-++ |--    ++.+..|+.+.-.+.|.
T Consensus       136 --EPp~~t~fIL~t~~~~~lLpTI~SRCq----~i~f~~~~~~~i~~~L~  179 (329)
T PRK08058        136 --EPSGDTTAILLTENKHQILPTILSRCQ----VVEFRPLPPESLIQRLQ  179 (329)
T ss_pred             --CCCCCCEEEEEECCHHHHHHHHHHCCE----EEECCCCCHHHHHHHHH
T ss_conf             --689786799872996664368863142----56588999999999999


No 134
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.91  E-value=1.1e-08  Score=81.93  Aligned_cols=201  Identities=26%  Similarity=0.382  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EE------C
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246997-------02------0
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FF------T  211 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~------~  211 (647)
                      -+|+||.|++++...|...++           ..|+....||+|+-|+|||-+||-+|.-.+|.       .=      .
T Consensus        13 ~~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~   81 (705)
T PRK05648         13 RSFREMVGQTHVLKALINALD-----------NQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCRE   81 (705)
T ss_pred             CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             757663281999999999997-----------098630465007898889899999999867789998897877600466


Q ss_pred             CCHHHHHHHHHHCCHHH-----HHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             58578864442033245-----9999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r  212 ISGSDFVELFVGVGASR-----VRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       212 ~~~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                      +....|+..+-=.+|+|     +|+|.+.+ ..+|     -|..|||..-+-              ....|.||.-+.  
T Consensus        82 i~~~~~~d~~e~d~as~~~v~~~r~~~~~~-~~~p~~~~~kv~~idevhmls--------------~~~fnallktle--  144 (705)
T PRK05648         82 IDEGRFVDLIEVDAASRTKVEDTRELLDNV-QYAPTRGRYKVYLIDEVHMLS--------------SHSFNALLKTLE--  144 (705)
T ss_pred             HHCCCCCCEEEECCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEEHHHHCC--------------HHHHHHHHHHCC--
T ss_conf             624897763445155447889999999855-517767745799984265417--------------999999987404--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR  358 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~  358 (647)
                      +....|.+|-||..|+.|..-+| |--||+.+- ++.....++   |+.-+  .++..++ --+..||+...| |=.|--
T Consensus       145 epp~~v~f~~att~~~k~p~t~~src~~~~~~~-~~~~~~~~~---l~~~~~~e~~~~~~-~~~~~~~~~~~g-~~rd~l  218 (705)
T PRK05648        145 EPPPHVKFLLATTDPQKLPVTILSRCLQFSLKN-MSPERVVEH---LSHVLGAENVPFEE-DALWLLGRAADG-SMRDAM  218 (705)
T ss_pred             CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCH-HHHHHHHHHCCC-CHHHHH
T ss_conf             797545999842873537589997664302368-999999999---99999975997789-999999997489-677799


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             9999987645532024210456899
Q gi|254780545|r  359 NLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       359 ~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      .|...|--    .+...|+.+++..
T Consensus       219 s~~dq~~~----~~~~~~~~~~v~~  239 (705)
T PRK05648        219 SLTDQAIA----FGEGKVLAADVRA  239 (705)
T ss_pred             HHHHHHHH----CCCCCCCHHHHHH
T ss_conf             99999986----0688407999999


No 135
>KOG1969 consensus
Probab=98.91  E-value=1.1e-07  Score=74.66  Aligned_cols=199  Identities=27%  Similarity=0.393  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH----HH------------------HCCCC-CCEEECCCCCHHHHHHHH
Q ss_conf             569889852889999999998743--356766----42------------------01233-311003787425888999
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLC--DPQKFK----RL------------------GGRIP-HGVLLVGPPGTGKTLLAR  199 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~--~~~~~~----~~------------------g~~~p-~g~ll~GppGtGKTlla~  199 (647)
                      -.|.|.-|-+.+-   +.+..|||  +|--|.    ++                  -.+|| |=+||+||||-|||.||.
T Consensus       268 k~FtdLLsDe~tN---R~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH  344 (877)
T KOG1969         268 KKFTDLLSDEKTN---RRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH  344 (877)
T ss_pred             HHHHHHHCCHHHH---HHHHHHHHHHCHHHHCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf             6788874520687---9999999861578640147554335466434556324686679840068753688787247999


Q ss_pred             HHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH--------HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             974246997020585788644420332459999999987--------378012063235641445578988626889889
Q gi|254780545|r  200 AVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKN--------NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTL  271 (647)
Q Consensus       200 a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~--------~~p~iifiDeida~~~~r~~~~~~~~~e~~~~l  271 (647)
                      .+|..||-..+.+.+||=.      ++.-|++--..|-+        ..|.-+.|||||.  .-|            ..+
T Consensus       345 ViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG--a~~------------~~V  404 (877)
T KOG1969         345 VIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG--APR------------AAV  404 (877)
T ss_pred             HHHHHCCCEEEEECCCCCC------CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC--CCH------------HHH
T ss_conf             9998628548873255543------47889999999886411225688863599842468--728------------999


Q ss_pred             HHHHHHHC-------CCCC--------------CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             98998530-------3235--------------77829999629810088333165642314100013478899999998
Q gi|254780545|r  272 NQLLVEMD-------GFES--------------SEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       272 n~ll~~md-------g~~~--------------~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      +.+|.-+-       |=..              ...||.||  |  |..-|||.-=--|-..|++..|...--.+=|+.-
T Consensus       405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC--N--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I  480 (877)
T KOG1969         405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC--N--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEI  480 (877)
T ss_pred             HHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEE--C--CCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf             99999997416142168663203455530465458778986--4--7555333310210489995699766899999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5488777321102454412037989999999998764553202
Q gi|254780545|r  331 SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR  373 (647)
Q Consensus       331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~  373 (647)
                      +.+-.+.  +|...|+..|+ ++-.||.+.+|.--.++.+..+
T Consensus       481 C~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r  520 (877)
T KOG1969         481 CHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVDR  520 (877)
T ss_pred             HHHHCCC--CCHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCCC
T ss_conf             7641577--88789999999-8613098888899999970444


No 136
>PRK08727 hypothetical protein; Validated
Probab=98.90  E-value=1.6e-07  Score=73.46  Aligned_cols=201  Identities=24%  Similarity=0.274  Sum_probs=120.2

Q ss_pred             CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHH
Q ss_conf             422569889-8528899999999987433567664201233311003787425888999974246---997020585788
Q gi|254780545|r  142 VGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDF  217 (647)
Q Consensus       142 ~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~  217 (647)
                      .+..||++. +|-......++..   ..        | ..+.-+.||||+|+|||.|+.|++.++   +....+++..++
T Consensus        13 ~~~~tfdnFi~~~n~~~a~l~~~---~~--------~-~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~   80 (233)
T PRK08727         13 PSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAA   80 (233)
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHH---HC--------C-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             97224212067855999999987---43--------8-888989998999998899999999999827997288447885


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             644420332459999999987378012063235641445578988626889----8899899853032357782999962
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
                      ..        ...+.++.. +. -..|.||.||.++.++         +.|    ...|.+.       .+.+-++++++
T Consensus        81 ~~--------~~~~~l~~l-e~-~~ll~iDDid~i~g~~---------~~e~aLFhL~N~~~-------~~~~~ll~ts~  134 (233)
T PRK08727         81 AG--------RLRDALEAL-EG-RSLVALDGVDSIAGQR---------EDEVALFDFHNRAR-------AAGITLLYTAR  134 (233)
T ss_pred             HH--------HHHHHHHHH-CC-CCEEEEECCHHCCCCH---------HHHHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf             32--------025677531-03-8978985501126982---------79999999999998-------61983899779


Q ss_pred             CCCCCCCH---HHCCCCCC--CCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98100883---33165642--3141000134788999999985--48877732110245441203798999999999876
Q gi|254780545|r  294 NRPDVLDA---ALLRPGRF--DRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAAL  366 (647)
Q Consensus       294 n~~~~lD~---al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~  366 (647)
                      .-|..++-   -|.=  ||  --.+.+..||.+.+..|++.+.  ++..++++| ++.|.++.+ .+-..+.++++.=-.
T Consensus       135 ~~P~~l~~~l~DL~S--RL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V-~~Yll~r~~-R~~~~l~~~l~~LD~  210 (233)
T PRK08727        135 QMPDGLALVLPDLRS--RLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAA-IDWLLTHGE-RELAGLVALLDRLDR  210 (233)
T ss_pred             CCHHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf             895662310021999--9966922885788979999999999998699999899-999998568-899999999999999


Q ss_pred             HHHHHHCCCCCHHHHHHHH
Q ss_conf             4553202421045689997
Q gi|254780545|r  367 MAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       367 ~a~r~~~~~i~~~dl~~A~  385 (647)
                      .+. ..++.||..=+.+.+
T Consensus       211 ~SL-~~kr~iTip~vk~vL  228 (233)
T PRK08727        211 ESL-AAKRRITVPFLRRVL  228 (233)
T ss_pred             HHH-HCCCCCCHHHHHHHH
T ss_conf             999-808988899999999


No 137
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.90  E-value=8e-08  Score=75.62  Aligned_cols=49  Identities=43%  Similarity=0.737  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             422569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      ....-|.||.|++.+|..++ |-          .-|   -..+||+|||||||||||+++.+=
T Consensus       185 ~~~~D~~dv~Gq~~akrale-IA----------AAG---gHnlLl~GpPG~GKTMlA~rlp~I  233 (506)
T PRK09862        185 ALQHDLSDVVGQEQGKRGLE-IT----------AAG---GHNLLLIGPPGTGKTMLASRINGL  233 (506)
T ss_pred             CCCCCHHHHCCCHHHHHHHH-HH----------HCC---CCCEEEECCCCCCHHHHHHHHHHC
T ss_conf             66567565369799999999-97----------446---886598769994598999775123


No 138
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89  E-value=1.2e-08  Score=81.45  Aligned_cols=187  Identities=27%  Similarity=0.407  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----CCCHHHHHHH
Q ss_conf             69889852889999999998743356766420123331100378742588899997424699702-----0585788644
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----TISGSDFVEL  220 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----~~~~s~~~~~  220 (647)
                      +|+||.|++++...|.-.++           ..|+....||.||-|+|||.+||-+|...+|.-=     .-.++...+.
T Consensus        14 ~f~~~vgq~~v~~~l~~a~~-----------~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i   82 (696)
T PRK06872         14 TFSEVVGQEHILTALSNGLK-----------ENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAI   82 (696)
T ss_pred             CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             56452385999999999997-----------1986304751178988888999999998678999999978886225767


Q ss_pred             HHH--------CCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             420--------3324-----599999999873780-----1206323564144557898862688988998998530323
Q gi|254780545|r  221 FVG--------VGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE  282 (647)
Q Consensus       221 ~~g--------~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~  282 (647)
                      .-|        .+|+     .+|+|.+.+ ..+|+     |..|||..-+-              ....|.||.-+.  +
T Consensus        83 ~~g~~~d~~eidaas~~~v~~~r~l~~~~-~~~p~~~~~kvy~idevhmls--------------~~~fnallktle--e  145 (696)
T PRK06872         83 EEGNFIDLIEIDAASRTKVEDTRELLDNV-QYKPVVGRFKVYLIDEVHMLS--------------RHSFNALLKTLE--E  145 (696)
T ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEEHHHHCC--------------HHHHHHHHHHHC--C
T ss_conf             44787754675056557889999999845-457767754799970054438--------------999999987502--7


Q ss_pred             CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             5778299996298100883331-6564231410001347889-9999998548877732110245441203798999999
Q gi|254780545|r  283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGR-EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL  360 (647)
Q Consensus       283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r-~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~  360 (647)
                      ..+.|++|-||..|+.|..-+| |--+|+.+- ++......+ ..|+.  -.++..++. -+..||+...| |=.|--.|
T Consensus       146 pp~~v~f~latt~~~k~p~tilsrc~~f~~~~-~~~~~i~~~l~~i~~--~e~~~~~~~-al~~~a~~a~g-s~rdalsl  220 (696)
T PRK06872        146 PPEYVKFLLATTDPQKLPITILSRCMQFHLKA-LDQTQIAQHLEFILT--QENIPFESP-ALEKLAKAAQG-SIRDSLSL  220 (696)
T ss_pred             CCCCEEEEEECCCHHHCCHHHHHHHHHEECCC-CCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
T ss_conf             97544899843863227488987665300268-999999999999999--849977999-99999997589-56778889


Q ss_pred             HHHHH
Q ss_conf             99987
Q gi|254780545|r  361 VNEAA  365 (647)
Q Consensus       361 ~~eAa  365 (647)
                      ...|-
T Consensus       221 ~dqai  225 (696)
T PRK06872        221 TDQAI  225 (696)
T ss_pred             HHHHH
T ss_conf             99999


No 139
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.88  E-value=7.3e-08  Score=75.90  Aligned_cols=217  Identities=21%  Similarity=0.322  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---------CCCCEECCCH---HHH
Q ss_conf             9852889999999998743356766420123331100378742588899997424---------6997020585---788
Q gi|254780545|r  150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---------ANVPFFTISG---SDF  217 (647)
Q Consensus       150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---------~~~~f~~~~~---s~~  217 (647)
                      -.|+..+++-|....+.|..|.+-     |+ .++||+|++|.|||++++-.+..         ..+|.+++..   ++-
T Consensus        36 WIgY~~A~~~L~~Le~Ll~~P~~~-----Rm-p~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~  109 (302)
T pfam05621        36 WIGYPRAVEALNRLEALYAWPNKQ-----RM-PNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSV  109 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCC-----CC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCH
T ss_conf             327789999999999998468646-----88-755887079887899999999967998786667021899976999886


Q ss_pred             HHHHHH----CCH-----HHHHHH----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             644420----332-----459999----9999873780120632356414455789886268898899899853032357
Q gi|254780545|r  218 VELFVG----VGA-----SRVRDM----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS  284 (647)
Q Consensus       218 ~~~~~g----~g~-----~~vr~l----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~  284 (647)
                      ...|..    .|+     .++-.+    ...-++..+-++.|||+..+-       .|+..++.+++|.|=--.+  +-.
T Consensus       110 ~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL-------~Gs~~~qr~~ln~LK~L~N--el~  180 (302)
T pfam05621       110 IRFYVALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVL-------AGNSVNRREFLNLLRFLGN--ELR  180 (302)
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHC-------CCCHHHHHHHHHHHHHHHH--CCC
T ss_conf             8999999998378778887789999999999997498789985436560-------4868899999999999863--658


Q ss_pred             CCEEEEEECCC--CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC--CCCHHH----HHHHHHCCCHHH
Q ss_conf             78299996298--1008833316564231410001347889999999854887773--211024----544120379899
Q gi|254780545|r  285 EGVILIAATNR--PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAP--NVILKT----IARGTPGFSGAD  356 (647)
Q Consensus       285 ~~v~vi~aTn~--~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~--~~d~~~----la~~t~g~sgAd  356 (647)
                      -.+|.+|.---  .=.-||-|-.  ||+-..--.----++=...|.-.-+..|+..  ++.-..    +-..|.|..| +
T Consensus       181 IpiV~vGt~eA~~ai~tD~Qlas--RF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~iG-e  257 (302)
T pfam05621       181 IPLVGVGTRDAYLAIRSDDQLEN--RFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIG-E  257 (302)
T ss_pred             CCEEEECCHHHHHHHHCCHHHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHH-H
T ss_conf             78699531999999706888885--05861168888980899999999986888777688889999999998599287-9


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             9999999876455320242104568999
Q gi|254780545|r  357 LRNLVNEAALMAARRNRRLVTMQEFEDA  384 (647)
Q Consensus       357 i~~~~~eAa~~a~r~~~~~i~~~dl~~A  384 (647)
                      |.+++++||..|++.|++.||.+.|.++
T Consensus       258 i~~Ll~~aA~~AI~sG~E~It~~~l~~~  285 (302)
T pfam05621       258 LAHLLMAAAIAAVESGEEAINHRTLSMA  285 (302)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHC
T ss_conf             9999999999998478710089999667


No 140
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88  E-value=2.1e-08  Score=79.88  Aligned_cols=146  Identities=27%  Similarity=0.403  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------------------
Q ss_conf             8985288999999999874335676642012333110037874258889999742469----------------------
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------------------  206 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------------------  206 (647)
                      ++.|.+++...+...+.   .      . .+.|..+||+||||||||.+|.++|.+..                      
T Consensus         2 ~~~~~~~~~~~l~~~~~---~------~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~   71 (325)
T COG0470           2 ELVPWQEAVKRLLVQAL---E------S-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG   71 (325)
T ss_pred             CCCCCHHHHHHHHHHHH---H------C-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             64332358999999998---6------5-888761003799999789999999999658664334552002244432025


Q ss_pred             --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             --970205857886444203324599999999873----78012063235641445578988626889889989985303
Q gi|254780545|r  207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG  280 (647)
Q Consensus       207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg  280 (647)
                        -.|+.+..|+-...  .+....||++=+..-..    ..-||+|||+|.+-.              +..|.||--|. 
T Consensus        72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE-  134 (325)
T COG0470          72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE-  134 (325)
T ss_pred             CCCCEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCC-
T ss_conf             6886599773213333--006999999998604465667726999732032698--------------88876754332-


Q ss_pred             CCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf             235778299996298100883331656423141000134788999
Q gi|254780545|r  281 FESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREH  325 (647)
Q Consensus       281 ~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~  325 (647)
                       .......+|-.||+|..+=|-|.-  | =..+.+..|+...+..
T Consensus       135 -ep~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~  175 (325)
T COG0470         135 -EPPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIA  175 (325)
T ss_pred             -CCCCCEEEEEEECCHHHCHHHHHH--H-EEEEECCCCCHHHHHH
T ss_conf             -488871699974985556478775--6-0788767741889999


No 141
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.88  E-value=7.5e-09  Score=83.05  Aligned_cols=194  Identities=20%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHH--
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699-----7020585788--
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDF--  217 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~--  217 (647)
                      -+|.||.|++++++.|...+.           ..++|...||+||+|+|||.+|.++|...-+     .+.....+.-  
T Consensus        14 ~~~~~liGqe~~~~~L~~a~~-----------~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~   82 (363)
T PRK07471         14 RETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLA   82 (363)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf             982731681999999999998-----------599764587679998188999999999985799977777678705312


Q ss_pred             ------HHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCC-CCCC---------CHHHHHHHHHHHHH
Q ss_conf             ------6444203324----59999999987378012063235641445578-9886---------26889889989985
Q gi|254780545|r  218 ------VELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG-LGGG---------NDEREQTLNQLLVE  277 (647)
Q Consensus       218 ------~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~-~~~~---------~~e~~~~ln~ll~~  277 (647)
                            +-..+..|..    -++.-++.-.......|.|||+..+...=+.. ..|+         ++-..+.-|.||--
T Consensus        83 ~~~~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~  162 (363)
T PRK07471         83 VDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKV  162 (363)
T ss_pred             CCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHH
T ss_conf             58777289999526999846676200113332124453999999999972485248966999868787388999999997


Q ss_pred             HCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf             303235778299996298100883331-6564231410001347889999999854887773211024544120379899
Q gi|254780545|r  278 MDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGAD  356 (647)
Q Consensus       278 mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAd  356 (647)
                      +.  +...++++|-.|+.|+.|=|-++ |--+|    .+.+.+.++-...|.-..  .+-.++-.+..+|....|=-|.-
T Consensus       163 LE--EPP~~t~fiLit~~~~~llpTI~SRCq~~----~~~~l~~~~~~~~L~~~~--~~~~~~~~~~~la~~a~Gs~~~A  234 (363)
T PRK07471        163 LE--EPPARSLLLLVSHAPARLLPTIRSRCRKL----RLRPLAPEDVIAALAEAG--GPALDDAELAALAALAEGSVGRA  234 (363)
T ss_pred             HC--CCCCCEEEEEEECCHHHCHHHHHHHCCCC----CCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHCCCCHHHH
T ss_conf             21--58988389986399777779999735242----589959999999999843--89999899999999758999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780545|r  357 L  357 (647)
Q Consensus       357 i  357 (647)
                      |
T Consensus       235 l  235 (363)
T PRK07471        235 L  235 (363)
T ss_pred             H
T ss_conf             9


No 142
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.88  E-value=2.9e-09  Score=85.98  Aligned_cols=81  Identities=36%  Similarity=0.575  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf             88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g  225 (647)
                      +-..|+.+|++..--+|+.+|.- |+      --|++||.||||||||-||-|+|.|.|  +||.+++||++.+.-+--+
T Consensus        24 ~GlVGQ~~AReAagiiv~mIk~~-K~------aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKT   96 (395)
T pfam06068        24 EGLVGQEKAREAAGVIVEMIKEG-KI------AGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKT   96 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHC-CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHH
T ss_conf             77545499999989999999727-75------773899877999888999999999748799734500111212565488


Q ss_pred             HHHHHHHHHHH
Q ss_conf             24599999999
Q gi|254780545|r  226 ASRVRDMFEQA  236 (647)
Q Consensus       226 ~~~vr~lf~~a  236 (647)
                      +. +.+.|++|
T Consensus        97 E~-L~qafRrs  106 (395)
T pfam06068        97 EA-LTQAFRKA  106 (395)
T ss_pred             HH-HHHHHHHH
T ss_conf             99-99999887


No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82  E-value=2.7e-07  Score=71.78  Aligned_cols=178  Identities=17%  Similarity=0.201  Sum_probs=105.7

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf             311003787425888999974246---99702058578864442033245999999998737801206323564144557
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI  258 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~  258 (647)
                      ..+.+|||+|||||.|.+|+++++   +.+-+++..++... |   .    .++++..+..  .++-||.+|.+..++  
T Consensus        40 ~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~-~---~----~~~l~~l~~~--d~l~iDDi~~i~g~~--  107 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-F---S----PAVLENLEQQ--DLVCLDDLQAVIGNE--  107 (229)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH-C---C----HHHHHHHHHC--CEEEEECHHHHCCCH--
T ss_conf             87999899999889999999999997189859997377564-0---6----9999876547--979996723424883--


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC-
Q ss_conf             898862688988998998530323577829999629810088---3331656423--1410001347889999999854-
Q gi|254780545|r  259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR-  332 (647)
Q Consensus       259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~-  332 (647)
                             +.+..+-.|.-++-  +....++++++..-|..++   |-|.=  ||-  -.+.+..||.+.|.+|++.+.+ 
T Consensus       108 -------~~e~~lF~l~N~l~--~~~~~~ll~ss~~~p~~l~~~l~DL~S--Rl~~~~~~~i~~~dd~~~~~iL~~~a~~  176 (229)
T PRK06893        108 -------EWELAIFDLFNRIK--ESGKTLLLISANQSPHALQIKLPDLAS--RLTWGEIYQLNDLTDEQKIEVLQRNAYQ  176 (229)
T ss_pred             -------HHHHHHHHHHHHHH--HCCCCEEEEECCCCHHHHCCHHHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             -------89999999999999--759917998579883322100267999--9968836996677757999999999996


Q ss_pred             -CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             -88777321102454412037989999999998764553202421045689997
Q gi|254780545|r  333 -NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       333 -~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                       +..++++| ++.++++.+ -+-..|..+++.=-..+ ...++.||..-+.+.+
T Consensus       177 rgl~l~~~v-~~yl~~r~~-R~~~~l~~~l~~Ld~~s-l~~kr~iTiplvkevL  227 (229)
T PRK06893        177 RGIELSDET-ANFLLKRLD-RDMHTLFDALDLLDKAS-LQAQRKLTIPFVKEIL  227 (229)
T ss_pred             CCCCCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHH
T ss_conf             499999899-999999834-78999999999999999-9808999999999986


No 144
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.82  E-value=3.1e-07  Score=71.38  Aligned_cols=211  Identities=23%  Similarity=0.321  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----
Q ss_conf             69889852889999999998743356766420123331100378742588899997424---6997020585788-----
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-----  217 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-----  217 (647)
                      .|.++.|...+-+++.+.+.      +.    +..+.-||+.|++||||.++|++|-..   ++-||+.++++.+     
T Consensus       141 ~~~~lig~S~~m~~v~~~i~------~~----A~s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~  210 (457)
T PRK11361        141 QWGHILTNSPAMMDICKDTA------KI----ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL  210 (457)
T ss_pred             CCCCCEECCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
T ss_conf             56774546999999999999------98----488995899889985789999999983798899838764787985778


Q ss_pred             HHHHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCC----C
Q ss_conf             644420------33245-999999998737801206323564144557898862688988998998530--3235----7
Q gi|254780545|r  218 VELFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFES----S  284 (647)
Q Consensus       218 ~~~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~----~  284 (647)
                      -+...|      .|+.. -.-+|++|.   .--+|+|||+.+-..           -..-|-.+|.+-.  -..+    .
T Consensus       211 eseLFG~~kgaftga~~~~~G~~e~A~---gGTLfLdeI~~l~~~-----------~Q~kLLr~L~~~~~~~~g~~~~~~  276 (457)
T PRK11361        211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMPLV-----------LQAKLLRILQEREFERIGGHQTIK  276 (457)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHCC---CCCEECCCHHHHHHH-----------HHHHHHHHHHCCCEEECCCCCEEE
T ss_conf             999718766787885314698613359---982631466452399-----------999999998649278569971366


Q ss_pred             CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH-H---HHHHHCCC----CC-CCCCCHHHHHHH
Q ss_conf             782999962981008833316564231-------41000134788999-9---99985488----77-732110245441
Q gi|254780545|r  285 EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH-I---LMVHSRNV----PL-APNVILKTIARG  348 (647)
Q Consensus       285 ~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~-i---~~~~~~~~----~~-~~~~d~~~la~~  348 (647)
                      ..|=+|+|||+.=   ..+.+.|+|..       .+.+.+|-..+|.+ |   +++++...    .. ...++-+.+...
T Consensus       277 ~dvRiIaaT~~~L---~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L  353 (457)
T PRK11361        277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL  353 (457)
T ss_pred             ECCEEEECCCCCH---HHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             5348996578785---9998758323889953022125173854587549999999999999974999898899999999


Q ss_pred             H-HCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             2-03798--99999999987645532024210456899975
Q gi|254780545|r  349 T-PGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAKD  386 (647)
Q Consensus       349 t-~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~  386 (647)
                      . ..|-|  .+|+|++..|.+.+   ....|+.+|+...+.
T Consensus       354 ~~y~WPGNvREL~n~ierav~~~---~~~~i~~~~l~~~~~  391 (457)
T PRK11361        354 TAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQIR  391 (457)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHC---CCCCCCHHHCCHHHH
T ss_conf             56999979999999999999828---998156676848661


No 145
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80  E-value=2.9e-07  Score=71.52  Aligned_cols=196  Identities=18%  Similarity=0.240  Sum_probs=124.4

Q ss_pred             HCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC-----CHHHHHHHHH---HCC---HH---HHHH----HHH
Q ss_conf             0123331-10037874258889999742469---970205-----8578864442---033---24---5999----999
Q gi|254780545|r  177 GGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI-----SGSDFVELFV---GVG---AS---RVRD----MFE  234 (647)
Q Consensus       177 g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~-----~~s~~~~~~~---g~g---~~---~vr~----lf~  234 (647)
                      ++.-.+| +++.|+||||||.+.++++....   +.++.+     +..+|.....   |..   ..   ..+.    |.+
T Consensus        38 ~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~  117 (269)
T TIGR03015        38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE  117 (269)
T ss_pred             HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99648965999729989889999999984593454899976999999999999999859898898999999999999999


Q ss_pred             HHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHCCCCCCC--CEEEEEECCCCCCCCHHHCCC--CC
Q ss_conf             9987378012063235641445578988626889889989--98530323577--829999629810088333165--64
Q gi|254780545|r  235 QAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL--LVEMDGFESSE--GVILIAATNRPDVLDAALLRP--GR  308 (647)
Q Consensus       235 ~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l--l~~mdg~~~~~--~v~vi~aTn~~~~lD~al~Rp--gR  308 (647)
                      .......+++.|||.+-+.              ..+|++|  |..+. .++.+  .+|++|-....+.|...-+|+  -|
T Consensus       118 ~~~~g~~~vliIDEAq~L~--------------~~~Le~Lr~L~n~e-~~~~~ll~iiL~GqpeL~~~L~~~~~~~l~qR  182 (269)
T TIGR03015       118 QFAAGKRALLVVDEAQNLT--------------PELLEELRMLSNFQ-TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQR  182 (269)
T ss_pred             HHHCCCCEEEEEECHHHCC--------------HHHHHHHHHHHCCC-CCCCCCEEEEEECCHHHHHHHCCCCHHHHHHC
T ss_conf             9966994699972422199--------------99999999997013-58887048999578679998727402545550


Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHCCCCCCCC--C---CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             2314100013478899999998548877732--1---1024544120379899999999987645532024210456899
Q gi|254780545|r  309 FDRQITVPNPDIVGREHILMVHSRNVPLAPN--V---ILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       309 fd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~--~---d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      .-.+++++.-+.++-.+-+++.++.--...+  +   -+..|.+.|. -.+.-|..+|..|-+.|..++++.|+.+++.+
T Consensus       183 I~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~-G~PR~IN~Lc~~aLl~a~~~~~~~I~~~~v~~  261 (269)
T TIGR03015       183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSR-GIPRLINILCDRLLLSAFLEEKREIGGEEVRE  261 (269)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             76799847999899999999999866999999859999999999869-90089999999999999994888679999999


Q ss_pred             HHHHC
Q ss_conf             97501
Q gi|254780545|r  384 AKDKI  388 (647)
Q Consensus       384 A~~rv  388 (647)
                      |+..+
T Consensus       262 ~~~el  266 (269)
T TIGR03015       262 VIAEI  266 (269)
T ss_pred             HHHHH
T ss_conf             99976


No 146
>KOG1051 consensus
Probab=98.77  E-value=5.6e-08  Score=76.73  Aligned_cols=159  Identities=25%  Similarity=0.351  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCC-------EECCCHHH-
Q ss_conf             8898528899999999987433567664201233311003787425888999974246---997-------02058578-
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVP-------FFTISGSD-  216 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~-------f~~~~~s~-  216 (647)
                      +-|.|-  .-++++.+++.|-.         +..+.-+|.|.||.|||-++.-+|...   +||       +++++-.. 
T Consensus       186 dPvigr--~deeirRvi~iL~R---------r~k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l  254 (898)
T KOG1051         186 DPVIGR--HDEEIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL  254 (898)
T ss_pred             CCCCCC--CHHHHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHC
T ss_conf             886588--52889999999814---------6789966983687772168999998766178885334552489870000


Q ss_pred             -HHHHHHHCCHHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             -8644420332459999999987-37801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  217 -FVELFVGVGASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       217 -~~~~~~g~g~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                       .-.+|-|..+.|++++-..+.. ....|+||||+.-+-...+.  .|+.|    ..| +|..|=   .+.++-+||||-
T Consensus       255 ~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d----~~n-lLkp~L---~rg~l~~IGatT  324 (898)
T KOG1051         255 VAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAID----AAN-LLKPLL---ARGGLWCIGATT  324 (898)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCC--CHHHH----HHH-HHHHHH---HCCCEEEEECCC
T ss_conf             35864212788999999999854798689983214322048874--11899----998-658888---559748972250


Q ss_pred             C-----CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             8-----10088333165642314100013478899999998
Q gi|254780545|r  295 R-----PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       295 ~-----~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      .     --.-||||=|  ||+- +.|+-|....-..||...
T Consensus       325 ~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l  362 (898)
T KOG1051         325 LETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGL  362 (898)
T ss_pred             HHHHHHHHHHCCCHHH--CCCE-EEECCCCCCCHHHHHHHH
T ss_conf             9999998763820541--8551-671357655314565554


No 147
>pfam00493 MCM MCM2/3/5 family.
Probab=98.77  E-value=4.9e-08  Score=77.17  Aligned_cols=158  Identities=28%  Similarity=0.338  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHC
Q ss_conf             8985288999999-9998743356766420123--33110037874258889999742469-970205857886444203
Q gi|254780545|r  149 DVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGV  224 (647)
Q Consensus       149 dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~  224 (647)
                      .|-|++.+|.-+. ..+   ....+...-|.+.  --.|||.|-||||||.|.|.++.=+- .-|.+-.||.    -+|.
T Consensus        25 ~i~G~~~vK~ai~l~l~---gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss----~~GL   97 (327)
T pfam00493        25 SIYGHEDVKKAILLQLF---GGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS----AAGL   97 (327)
T ss_pred             CCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----CCCC
T ss_conf             12498799999999980---8987658888620365118984699815609999999868870883177665----6776


Q ss_pred             CHHHHHHHHH-----HHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CC
Q ss_conf             3245999999-----99873---7801206323564144557898862688988998998530---------3235--77
Q gi|254780545|r  225 GASRVRDMFE-----QAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SE  285 (647)
Q Consensus       225 g~~~vr~lf~-----~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~  285 (647)
                      +++-+|+-+.     +|-..   ---|++|||+|-..              +++.+.|+.-|.         |...  +.
T Consensus        98 Ta~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~--------------~~d~saL~EAMEqqtVsIaKaGi~~tL~a  163 (327)
T pfam00493        98 TAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMN--------------EEDRVAIHEAMEQQTISIAKAGIVATLNA  163 (327)
T ss_pred             EEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCC--------------HHHHHHHHHHHHHCEEEEECCCEEEEECC
T ss_conf             1589980688836983684775589827850055588--------------76799999999868177633853897258


Q ss_pred             CEEEEEECCCCC-------------CCCHHHCCCCCCCCE-EEECHHHHHHHHHHHHH
Q ss_conf             829999629810-------------088333165642314-10001347889999999
Q gi|254780545|r  286 GVILIAATNRPD-------------VLDAALLRPGRFDRQ-ITVPNPDIVGREHILMV  329 (647)
Q Consensus       286 ~v~vi~aTn~~~-------------~lD~al~RpgRfd~~-i~~~~P~~~~r~~i~~~  329 (647)
                      ...||||.|-..             .|.++||-  |||-. +..+.||.+.-.+|.++
T Consensus       164 r~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLs--RFDLif~l~D~~~~~~D~~ia~~  219 (327)
T pfam00493       164 RCSVLAAANPIFGRYDPKKSVAENINLPPPLLS--RFDLIFVLLDKPDEEKDEELAKH  219 (327)
T ss_pred             CCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHC--CEEEEEEEECCCCHHHHHHHHHH
T ss_conf             717998527767737888898885589767745--01079884068986889999999


No 148
>KOG0745 consensus
Probab=98.73  E-value=2.1e-08  Score=79.81  Aligned_cols=120  Identities=29%  Similarity=0.424  Sum_probs=74.4

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-HHHHHCC-HHHHHHHHHHHH----HHCCHHEEHHHHHHHHCC
Q ss_conf             3110037874258889999742469970205857886-4442033-245999999998----737801206323564144
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-ELFVGVG-ASRVRDMFEQAK----NNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~~~~g~g-~~~vr~lf~~a~----~~~p~iifiDeida~~~~  255 (647)
                      ..|||.||.|+||||||+.+|.=.+|||.-..++.+- --|||+- ++-+..|...|.    +..--||||||+|-|+++
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~  306 (564)
T KOG0745         227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK  306 (564)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHHHHHCCC
T ss_conf             54799778887643899999997088768732552200553454299999999997257899882673887601244136


Q ss_pred             CCCCCCCCCHH-HHHHHHHHHHHHCCCCC-----------CCCEEEEEECCCCCCCCHH
Q ss_conf             55789886268-89889989985303235-----------7782999962981008833
Q gi|254780545|r  256 RGIGLGGGNDE-REQTLNQLLVEMDGFES-----------SEGVILIAATNRPDVLDAA  302 (647)
Q Consensus       256 r~~~~~~~~~e-~~~~ln~ll~~mdg~~~-----------~~~v~vi~aTn~~~~lD~a  302 (647)
                      -.+- +.+.|. .|-+-..||--+.|---           ....|.|-+||-.-+.--|
T Consensus       307 ~~~i-~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA  364 (564)
T KOG0745         307 AESI-HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA  364 (564)
T ss_pred             CCCC-CCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCC
T ss_conf             7654-544456626699999998526277026778777899985897136668880343


No 149
>PRK08116 hypothetical protein; Validated
Probab=98.72  E-value=4.2e-08  Score=77.63  Aligned_cols=115  Identities=23%  Similarity=0.407  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHH----HCCHHHHHHHHHH
Q ss_conf             9987433567664201233311003787425888999974246---99702058578864442----0332459999999
Q gi|254780545|r  163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFV----GVGASRVRDMFEQ  235 (647)
Q Consensus       163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~----g~g~~~vr~lf~~  235 (647)
                      ...|.++   |..++ ..++|+||+||||||||.||-|||+++   |.+.+.++.++|+...-    ..+.....++++.
T Consensus        94 a~~Y~~~---f~~~~-~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~  169 (262)
T PRK08116         94 AVKYVKK---FEEMK-KESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRA  169 (262)
T ss_pred             HHHHHHH---HHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999998---98736-4686189989899989999999999999879939998899999999999863561019999998


Q ss_pred             HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             9873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      . .++ -++.||++-   ..+.+      +.   +..+|..-+|.- -+.+--+|-+||.+
T Consensus       170 l-~~~-dLLIiDDlG---~e~~t------~w---~~e~lf~IIn~R-y~~~kptIiTTNl~  215 (262)
T PRK08116        170 L-DNA-DLLILDDLG---AEKDT------EW---VREKLYNIIDSR-YRKGLPTIFTTNLS  215 (262)
T ss_pred             H-HCC-CEEEEEHHC---CCCCC------HH---HHHHHHHHHHHH-HHCCCCEEEECCCC
T ss_conf             6-129-989983221---45698------78---999999999999-97699989987999


No 150
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71  E-value=2.6e-08  Score=79.16  Aligned_cols=138  Identities=25%  Similarity=0.387  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf             225698898528-899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r  143 GSVTFKDVAGVD-EAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV  218 (647)
Q Consensus       143 ~~v~f~dv~g~~-~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~  218 (647)
                      -+++|+|+.--+ +-...+..+.+|+..   |..  ..-.||++||||+|||||.||.|+|++.   |.+.+.+.-++|+
T Consensus       123 ~~as~~d~~~~d~~R~~a~~~a~~F~~~---y~~--~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~  197 (306)
T PRK08939        123 LQATLADIDLDDLDRLDALMAALDFLEA---YKP--GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFI  197 (306)
T ss_pred             HCCCHHHCCCCCHHHHHHHHHHHHHHHH---HCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf             8098986488977899999999999997---376--98887788989999989999999999999869929998759999


Q ss_pred             HHHHH-CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHH-HHCCCCCCCCEEEEEECCC
Q ss_conf             44420-3324599999999873780120632356414455789886268-8988998998-5303235778299996298
Q gi|254780545|r  219 ELFVG-VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLV-EMDGFESSEGVILIAATNR  295 (647)
Q Consensus       219 ~~~~g-~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~  295 (647)
                      ...-+ -+...+.+..+.. +++| +++||+|-|   -..      +.+ |+.+|..+|. -|+     +..-++-+||.
T Consensus       198 ~~lK~s~~d~s~~~~i~~~-k~~~-vLiLDDiGa---E~~------t~W~rd~vl~~IL~~Rm~-----~~lPTffTSN~  261 (306)
T PRK08939        198 RELKNAISDGSVKEKIDAV-KEAP-VLMLDDIGA---EQM------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNF  261 (306)
T ss_pred             HHHHHHHCCCCHHHHHHHH-HCCC-EEEEECCCC---CCC------CHHHHHHHHHHHHHHHHH-----CCCCEEEECCC
T ss_conf             9999986489889999998-4499-899844465---426------777899899999999997-----49997997799


Q ss_pred             -CCCCCH
Q ss_conf             -100883
Q gi|254780545|r  296 -PDVLDA  301 (647)
Q Consensus       296 -~~~lD~  301 (647)
                       ++.|..
T Consensus       262 ~~~eLe~  268 (306)
T PRK08939        262 DFDELEH  268 (306)
T ss_pred             CHHHHHH
T ss_conf             9999999


No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.68  E-value=5.2e-08  Score=76.94  Aligned_cols=208  Identities=22%  Similarity=0.302  Sum_probs=113.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH--
Q ss_conf             22569889852889999999998743356766420123331100378742588899997424---6997020585788--
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF--  217 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~--  217 (647)
                      ...+|+|+.|...+-.++.+   ..   +++    |..+.-||++|.+||||.++|+|+-..   ++-||+.++++.+  
T Consensus       199 ~~~~F~~iig~S~~m~~v~~---~a---~r~----A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~  268 (513)
T PRK10820        199 DVSAFSQIVAVSPKMKHVVE---QA---RKL----AMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPE  268 (513)
T ss_pred             CCCCHHHHEECCHHHHHHHH---HH---HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCH
T ss_conf             41687775108999999999---99---998----598998899898982499999999966887899826888998996


Q ss_pred             ---HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCC----CCEE
Q ss_conf             ---64442033245999999998737801206323564144557898862688988998998530--32357----7829
Q gi|254780545|r  218 ---VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFESS----EGVI  288 (647)
Q Consensus       218 ---~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~~----~~v~  288 (647)
                         -+...|-....-.-+|+.|   ..-.+|+|||+.+-..           -..-|-++|.+--  -..++    -.|=
T Consensus       269 ~l~eseLFG~a~~~~~G~fe~A---~gGTLfLdEI~~l~~~-----------~Q~kLLr~Lq~~~~~rvG~~~~~~~dvR  334 (513)
T PRK10820        269 DAVESELFGHAPEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGEDHEVHVDVR  334 (513)
T ss_pred             HHHHHHHCCCCCCCCCCCEEEC---CCCEEEEECHHHCCHH-----------HHHHHHHHHHCCEEEECCCCCEEEEEEE
T ss_conf             7899986387666889755785---8988999783659999-----------9999999986897996599853567789


Q ss_pred             EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC------CCCCCCCCHHHHHHH-HH
Q ss_conf             99962981008833316564231-------4100013478899-99---9998548------877732110245441-20
Q gi|254780545|r  289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN------VPLAPNVILKTIARG-TP  350 (647)
Q Consensus       289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~------~~~~~~~d~~~la~~-t~  350 (647)
                      +|||||+.=   ..+.+.|+|.+       .+.+.+|-..+|. +|   .++++..      ++. +.++-+.+... ..
T Consensus       335 iIaaT~~dL---~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~-~~ls~~a~~~L~~y  410 (513)
T PRK10820        335 VICATQKNL---VELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR-PKLSADLSTVLTRY  410 (513)
T ss_pred             EEECCCHHH---HHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHC
T ss_conf             996265309---99987298508899986167255888344655699999999999999759998-98479999999708


Q ss_pred             CCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             3798--999999999876455320242104568
Q gi|254780545|r  351 GFSG--ADLRNLVNEAALMAARRNRRLVTMQEF  381 (647)
Q Consensus       351 g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl  381 (647)
                      .|-|  .+|+|++..|.+.+   ....|+.+|+
T Consensus       411 ~WPGNVREL~n~iera~~~~---~g~~i~~~di  440 (513)
T PRK10820        411 GWPGNVRQLKNAIYRALTQL---EGYELRPQDI  440 (513)
T ss_pred             CCCCHHHHHHHHHHHHHHHC---CCCCCCHHHC
T ss_conf             99979999999999999957---9985349982


No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.67  E-value=3.2e-07  Score=71.24  Aligned_cols=181  Identities=19%  Similarity=0.283  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------EECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246997----------0205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------FFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------f~~~~~s  215 (647)
                      -|+||.|++.+++.|+..+.           -.++|.+.||+||.|+||+.+|+++|...-+.          +..-+.+
T Consensus         2 ~F~~iiGq~~~~~~L~~ai~-----------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHP   70 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIE-----------QNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHP   70 (314)
T ss_pred             CCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf             83312594999999999998-----------5996744877899983299999999999857899997665587518999


Q ss_pred             HHHHH---HHHCC----------------------HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             88644---42033----------------------2459999999987----3780120632356414455789886268
Q gi|254780545|r  216 DFVEL---FVGVG----------------------ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE  266 (647)
Q Consensus       216 ~~~~~---~~g~g----------------------~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e  266 (647)
                      ||.-.   |...|                      -..||++-.....    ....|+.||+.|.+              
T Consensus        71 Dl~~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m--------------  136 (314)
T PRK07399         71 DLLWVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM--------------  136 (314)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------------
T ss_conf             778860562003454557789876530268777879999999999731885688479998897871--------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             89889989985303235778299996298100883331656423141000134788999999985488777321102454
Q gi|254780545|r  267 REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIA  346 (647)
Q Consensus       267 ~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la  346 (647)
                      .++.-|.||--+.  +...+++++- |+.++.|=|-+.=  |- .+|.+..-+.+.-..+|+.+...  -...++...+.
T Consensus       137 ~~~AaNaLLKtLE--EP~~~~fILi-t~~~~~lLpTI~S--RC-Q~i~F~~l~~~~i~~~L~~~~~~--~~~~~~~~~l~  208 (314)
T PRK07399        137 NEAAANALLKTLE--EPGNGTLILI-APSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDN--INEILDHPELL  208 (314)
T ss_pred             CHHHHHHHHHHHC--CCCCCEEEEE-ECCHHHCCHHHHC--CC-EEEECCCCCHHHHHHHHHHCCCC--CCCCCCHHHHH
T ss_conf             9999999998614--7878569999-7993649146641--87-56338998999999999971664--33102789999


Q ss_pred             HHHHCCCHHHHHH
Q ss_conf             4120379899999
Q gi|254780545|r  347 RGTPGFSGADLRN  359 (647)
Q Consensus       347 ~~t~g~sgAdi~~  359 (647)
                      ....|--|+-|++
T Consensus       209 ~~A~GspG~a~~~  221 (314)
T PRK07399        209 ALAQGSPGAAIAN  221 (314)
T ss_pred             HHHCCCHHHHHHH
T ss_conf             8817997999999


No 153
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66  E-value=1.4e-06  Score=66.55  Aligned_cols=167  Identities=25%  Similarity=0.398  Sum_probs=118.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHH
Q ss_conf             24225698898528899999999987433567664201233311003787425888999974246---997020585788
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDF  217 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~  217 (647)
                      .-..+..+|+.|+|..|+.|.      +|-++|.+  +.|-..|||+|.-||||+-|.||+-+|-   |.-.+.++-+++
T Consensus        53 ~~~~i~L~~l~Gvd~qk~~L~------~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl  124 (287)
T COG2607          53 DPDPIDLADLVGVDRQKEALV------RNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL  124 (287)
T ss_pred             CCCCCCHHHHHCCHHHHHHHH------HHHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf             899767898727318999999------98999972--8865236776377777479999999998741770799768888


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-C-CCCCEEEEEECC
Q ss_conf             6444203324599999999873-780120632356414455789886268898899899853032-3-577829999629
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF-E-SSEGVILIAATN  294 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~-~-~~~~v~vi~aTn  294 (647)
                      ..         +-+|+++-|.. -.-|||+|++- +        ..+ |.   .--+|=+-|||= + ...+|++-|+.|
T Consensus       125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~g-d~---~yK~LKs~LeG~ve~rP~NVl~YATSN  182 (287)
T COG2607         125 AT---------LPDLVELLRARPEKFILFCDDLS-F--------EEG-DD---AYKALKSALEGGVEGRPANVLFYATSN  182 (287)
T ss_pred             HH---------HHHHHHHHHCCCCEEEEEECCCC-C--------CCC-CH---HHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf             65---------79999999618860899956777-7--------778-13---899999985388556887079997158


Q ss_pred             CCCCCCHHHC-C-------------------CCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8100883331-6-------------------56423141000134788999999985488777
Q gi|254780545|r  295 RPDVLDAALL-R-------------------PGRFDRQITVPNPDIVGREHILMVHSRNVPLA  337 (647)
Q Consensus       295 ~~~~lD~al~-R-------------------pgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~  337 (647)
                      |-..|..-.. +                   +-||--.+.+..||.++-..|...|+++..++
T Consensus       183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~  245 (287)
T COG2607         183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD  245 (287)
T ss_pred             CCCCCCHHHHHCCCCCCCCCHHHHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             753362766427784023580677877625464234045036878899999999999985999


No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.65  E-value=1.1e-07  Score=74.60  Aligned_cols=131  Identities=18%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHH
Q ss_conf             2569889-8528899999999987433567664201233311003787425888999974246---99702058578864
Q gi|254780545|r  144 SVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVE  219 (647)
Q Consensus       144 ~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~  219 (647)
                      +.+|+.. +-.+..+..+.....|.++..      . -..|+||+||||||||.||-|||+++   |.+.+.++.++++.
T Consensus        65 ~~~Feny~~~~~~q~~al~~a~~y~enf~------~-~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~  137 (242)
T PRK07952         65 NCSFENYRVECEGQMNALSKARQYVEEFD------G-NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS  137 (242)
T ss_pred             CCEEECEECCCHHHHHHHHHHHHHHHHHC------C-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf             88421201587778999999999998654------3-8871799789999789999999999998799499977999999


Q ss_pred             HHH---HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             442---03324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  220 LFV---GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       220 ~~~---g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      ..-   +.+...-.++++...  .+-.+.|||+-+   .+.      .+.....|++++-.=  ......+|+  .||.+
T Consensus       138 ~lr~t~~~~~~~e~~~l~~l~--~~dLLIiDdlG~---e~~------t~~~~~~lf~iId~R--y~~~kp~Ii--tTNl~  202 (242)
T PRK07952        138 AMKDTFRNSETSEEQLLNDLS--NVDLLVIDEIGV---QTE------SRYEKVIINQIVDRR--SSSKRPTGM--LTNSN  202 (242)
T ss_pred             HHHHHHHCCCCCHHHHHHHHH--CCCEEEEECCCC---CCC------CHHHHHHHHHHHHHH--HHCCCCEEE--EECCC
T ss_conf             999998068756999999863--189898730146---658------888999999999999--971698899--81799


No 155
>PRK06620 hypothetical protein; Validated
Probab=98.62  E-value=1.1e-06  Score=67.49  Aligned_cols=182  Identities=14%  Similarity=0.234  Sum_probs=104.8

Q ss_pred             HHHHHHHHH-HHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             999987433-567664201233-311003787425888999974246997020585788644420332459999999987
Q gi|254780545|r  161 QEIVDFLCD-PQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKN  238 (647)
Q Consensus       161 ~~~v~~l~~-~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~  238 (647)
                      .+.+.++++ |+.   .|..+. +.+++|||+|+|||.|+++.+..++..++.  ...+.               .....
T Consensus        25 ~~A~~~i~~wp~~---~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~--~~~~~---------------~~~~~   84 (214)
T PRK06620         25 DQAYNIIKNWQCM---FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN---------------EEILE   84 (214)
T ss_pred             HHHHHHHHHCHHC---CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEC--HHHCC---------------HHHHH
T ss_conf             9999999836302---5668655559998799998899999999982858815--12145---------------87884


Q ss_pred             HCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC--CEEEE
Q ss_conf             3780120632356414455789886268-89889989985303235778299996298100883331656423--14100
Q gi|254780545|r  239 NSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD--RQITV  315 (647)
Q Consensus       239 ~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd--~~i~~  315 (647)
                      ... .+.||.+|.+           +++ --+..|.+       ..+.+-+++.++..|..+.=.-|| -|+-  ..+.+
T Consensus        85 ~~~-~~iiddid~~-----------~e~~lfhlfN~~-------~~~~~~llits~~~p~~~~L~DL~-SRl~~~~~~~i  144 (214)
T PRK06620         85 KYN-AFIIEDIENW-----------QEPALLHIFNII-------NEKQKYLLLTSSDKSRNFTLPDLS-SRIKSVLSILL  144 (214)
T ss_pred             HCC-CEEEECCCCC-----------CHHHHHHHHHHH-------HHCCCEEEEEECCCCCCCCCCCHH-HHHHCCCEEEC
T ss_conf             379-3798467757-----------467999999999-------715987999827985224535789-99854644332


Q ss_pred             CHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             01347889999999854--88777321102454412037989999999998764553202421045689997
Q gi|254780545|r  316 PNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       316 ~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      ..||.+-+..++..++.  +..++++| ++.|+++.+ .|-..|..++..--..+. ..++.||..-+.+++
T Consensus       145 ~~PdD~l~~~ll~k~~~~r~i~i~~~v-i~yl~~ri~-Rs~~~l~~~v~~ld~~sl-~~kr~Iti~likevL  213 (214)
T PRK06620        145 NSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLP-REYSKIIEILENINYFAL-ISKRKITISLVKEVL  213 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH
T ss_conf             698989999999999998699887559-999999851-789999999999999999-839998899999983


No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=98.62  E-value=3.7e-08  Score=78.04  Aligned_cols=91  Identities=33%  Similarity=0.587  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHHHHHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246-----997020585788644
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVEL  220 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~~~~~  220 (647)
                      |.|||.|+|++...|+-.|          +-| ++| ..||.||||+|||.-|.|+|.+.     .-+|+.+.+|+=.  
T Consensus        23 ~LddIVgQehIVkRLK~YV----------k~~-smP-HLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~--   88 (863)
T PRK04132         23 RLDEIVGQDHIVKRLKHYV----------KTG-SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER--   88 (863)
T ss_pred             CHHHHCCHHHHHHHHHHHH----------CCC-CCC-CEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCC--
T ss_conf             1655227499999999886----------238-885-44304899877144788888876143145556641442123--


Q ss_pred             HHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHC
Q ss_conf             420332459999999987378------0120632356414
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGR  254 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~  254 (647)
                          |---+|..-..-....|      -++||||.|+++.
T Consensus        89 ----~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~  124 (863)
T PRK04132         89 ----GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ  124 (863)
T ss_pred             ----CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             ----634888877750686645786542464436564010


No 157
>PRK09087 hypothetical protein; Validated
Probab=98.61  E-value=1.2e-06  Score=67.17  Aligned_cols=199  Identities=17%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             422569889-8528899999999987433567664201233311003787425888999974246997020585788644
Q gi|254780545|r  142 VGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       142 ~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      .+.-+|+|. +|-..     ++++.++.+..      ..+-+.+.||||+|+|||.|+++.+.+++..++...  .+.. 
T Consensus        15 ~~~~~~dnF~vs~~N-----~~a~~~l~~~~------~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~--~~~~-   80 (226)
T PRK09087         15 QPGYGRDDLVVTESN-----RAAVSLVDRWP------NWPSPVVVLAGPVGSGKTHLASIWREKADALLVHPN--EIGS-   80 (226)
T ss_pred             CCCCCCCCEEECCCH-----HHHHHHHHHCC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH--HCCH-
T ss_conf             877873364775769-----99999998472------677775899899999886999999998099683668--7474-


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             42033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                                +...   ....+.++||.+|..+          .+|.  .|   .--+.-+..+.+-+++.+...|..++
T Consensus        81 ----------~~~~---~~~~~~~~idd~d~~~----------~dEe--~L---Fhl~N~~~~~~~~LLlts~~~p~~l~  132 (226)
T PRK09087         81 ----------DAAN---AAAERPVLIEDIDAGG----------FDET--GL---FHLINSVRQAGTSLLMTSRLWPSAWN  132 (226)
T ss_pred             ----------HHHH---HHCCCCEEEECCCCCC----------CCHH--HH---HHHHHHHHHCCCEEEEECCCCHHHCC
T ss_conf             ----------6676---5327988997487777----------4789--99---99999998539879998898956667


Q ss_pred             ---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             ---333165642--31410001347889999999854--88777321102454412037989999999998764553202
Q gi|254780545|r  301 ---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR  373 (647)
Q Consensus       301 ---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~  373 (647)
                         |=|.=  ||  --.+.++.||.+.+..++..++.  +..++++| +..|.++.+ .|=..|..++..-=..+ -..+
T Consensus       133 ~~L~DL~S--RL~~~~~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v-~~yll~r~~-Rs~~~l~~~l~~LD~~S-L~~k  207 (226)
T PRK09087        133 VKLPDLKS--RLKAATVVEIGEPDDALLSGVIFKLFADRQLYVEPHV-VYYLVSRME-RSLFAAQTIVERLDRLA-LERK  207 (226)
T ss_pred             CCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHH-HHCC
T ss_conf             62468999--9857857983599989999999999875765788889-999998458-89999999999999999-9818


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             42104568999750
Q gi|254780545|r  374 RLVTMQEFEDAKDK  387 (647)
Q Consensus       374 ~~i~~~dl~~A~~r  387 (647)
                      +.||..=+.+.++.
T Consensus       208 r~ITiplikevL~~  221 (226)
T PRK09087        208 SRITRALAAEVLNE  221 (226)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             99989999999985


No 158
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.61  E-value=3.5e-07  Score=70.96  Aligned_cols=228  Identities=26%  Similarity=0.382  Sum_probs=131.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC
Q ss_conf             42256988985288999999-99987433567664201233311003787425888999974246-------99702058
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS  213 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~  213 (647)
                      .....|.-|.|+|..|.-|- ..|+    |         --.|+|..|+.|||||-+|||+|.=.       |+||=.--
T Consensus        11 r~~~pf~aivGqd~lk~aL~l~av~----P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP   77 (423)
T COG1239          11 RENLPFTAIVGQDPLKLALGLNAVD----P---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDP   77 (423)
T ss_pred             HHCCCHHHHCCCHHHHHHHHHHHCC----C---------CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf             7516656543753777887653026----3---------10426876688752779999999867963321688788998


Q ss_pred             -HH------------------------HHHHHHHHCCHHHH-------HH------HHH---HHHHHCCHHEEHHHHHHH
Q ss_conf             -57------------------------88644420332459-------99------999---998737801206323564
Q gi|254780545|r  214 -GS------------------------DFVELFVGVGASRV-------RD------MFE---QAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       214 -~s------------------------~~~~~~~g~g~~~v-------r~------lf~---~a~~~~p~iifiDeida~  252 (647)
                       .+                        .|+..=+|.++.||       +.      .|+   .|+.|- -|+||||+--+
T Consensus        78 ~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL  156 (423)
T COG1239          78 DDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLL  156 (423)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCC-CEEEEECCCCC
T ss_conf             87055519998620232445422100312238876304330045679999726830027751100358-87987233435


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHH---------CCCC--CCCCEEEEEECC------CCCCCCHHHCCCCCCCCEEEE
Q ss_conf             14455789886268898899899853---------0323--577829999629------810088333165642314100
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEM---------DGFE--SSEGVILIAATN------RPDVLDAALLRPGRFDRQITV  315 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~m---------dg~~--~~~~v~vi~aTn------~~~~lD~al~RpgRfd~~i~~  315 (647)
                      .              ++..|+||.-+         +|.+  -.-.+++||+.|      ||..||       ||.-+|.+
T Consensus       157 ~--------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-------Rfg~~v~~  215 (423)
T COG1239         157 D--------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-------RFGLEVDT  215 (423)
T ss_pred             C--------------HHHHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCCCCCCCHHHHH-------HHCCEEEC
T ss_conf             1--------------89999999999717740335750313676179996448544663246675-------41115623


Q ss_pred             CHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHCCCCCC
Q ss_conf             0134-7889999999854887773211024544120379899999999987645532024210456899-9750136865
Q gi|254780545|r  316 PNPD-IVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED-AKDKILMGAE  393 (647)
Q Consensus       316 ~~P~-~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~-A~~rv~~G~e  393 (647)
                      ..|. .+.|.+|.+.-+.- --+|+.=++.++..+         .-++ +.+.++|+....+...|-.. .+-.+.    
T Consensus       216 ~~~~~~~~rv~Ii~r~~~f-~~~Pe~f~~~~~~~~---------~~lR-~~ii~ar~~l~~V~l~~~~~~~ia~~~----  280 (423)
T COG1239         216 HYPLDLEERVEIIRRRLAF-EAVPEAFLEKYADAQ---------RALR-ARIIAARSLLSEVELDDDAETKIAELC----  280 (423)
T ss_pred             CCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHH---------HHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHH----
T ss_conf             4788788889999998875-008299999999999---------9999-999999844666467677999999999----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5676668667789999999999999850
Q gi|254780545|r  394 RRSTAMTEEEKKITAYHEAGHAVVACHV  421 (647)
Q Consensus       394 k~~~~~~~~ek~~vAyHEAGHAlva~~l  421 (647)
                      .+..+-.  .+.-+..+.++.|+.+|.-
T Consensus       281 ~~~~v~g--~radi~~~r~a~a~aa~~G  306 (423)
T COG1239         281 ARLAVDG--HRADIVVVRAAKALAALRG  306 (423)
T ss_pred             HHHCCCC--CCHHHHHHHHHHHHHHHCC
T ss_conf             9856578--7425678999999987539


No 159
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.57  E-value=2e-06  Score=65.42  Aligned_cols=206  Identities=25%  Similarity=0.335  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHC---CCCCCEECCCHHHHHH-----HH
Q ss_conf             985288999999999874335676642012333110037874258889999742---4699702058578864-----44
Q gi|254780545|r  150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG---EANVPFFTISGSDFVE-----LF  221 (647)
Q Consensus       150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~---e~~~~f~~~~~s~~~~-----~~  221 (647)
                      +.|.-.+-+++.+.+.      +.    ++...-||+.|++||||.++|++|-.   ..+-||+.++++.+-+     ..
T Consensus       141 liG~S~am~~v~~~i~------~~----A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseL  210 (441)
T PRK10365        141 MVGKSPAMQHLLSEIA------LV----APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESEL  210 (441)
T ss_pred             CEECCHHHHHHHHHHH------HH----HCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             6668999999999999------98----4889948998999810999999999657877898079878989845558986


Q ss_pred             HH------CCHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCC----CCCEE
Q ss_conf             20------3324-5999999998737801206323564144557898862688988998998530--3235----77829
Q gi|254780545|r  222 VG------VGAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFES----SEGVI  288 (647)
Q Consensus       222 ~g------~g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~----~~~v~  288 (647)
                      .|      .|+. +...+|+.|   ....+|+|||+.+-..           -..-|-.+|.+-.  -+.+    .-.|=
T Consensus       211 FG~~~gaftga~~~~~g~~~~A---~gGTLfLdeI~~l~~~-----------~Q~kLl~~l~~~~~~~~g~~~~~~~d~R  276 (441)
T PRK10365        211 FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPM-----------MQVRLLRAIQEREVQRVGSNQTISVDVR  276 (441)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEC---CCCEECCCCCCCCCHH-----------HHHHHHHHHHHHHHCCCCCCCEEECCCE
T ss_conf             1775568789653468987788---9982550231529999-----------9999998777521000588734413637


Q ss_pred             EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHHH-HC
Q ss_conf             99962981008833316564231-------41000134788999----999985488----77-7321102454412-03
Q gi|254780545|r  289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARGT-PG  351 (647)
Q Consensus       289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~t-~g  351 (647)
                      +|+|||+.=   ..+.+.|+|..       .+.+.+|-..+|.+    +..++++..    .. -..++-+.+.... .-
T Consensus       277 iIaat~~~l---~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~  353 (441)
T PRK10365        277 LIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD  353 (441)
T ss_pred             EEECCCCCH---HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf             998378899---99988198258999886011137826000620099999999999999849998888999999997099


Q ss_pred             CCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             798--9999999998764553202421045689997
Q gi|254780545|r  352 FSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       352 ~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      |-|  .+|+|++..|.+.+   ....|+..|+..++
T Consensus       354 WPGNvREL~n~iera~~~~---~~~~i~~~~l~~~~  386 (441)
T PRK10365        354 WPGNIRELENAVERAVVLL---TGEYISERELPLAI  386 (441)
T ss_pred             CCCHHHHHHHHHHHHHHHC---CCCCCCHHHCCHHH
T ss_conf             9989999999999999957---89868846575433


No 160
>KOG1514 consensus
Probab=98.57  E-value=1.7e-06  Score=65.94  Aligned_cols=195  Identities=22%  Similarity=0.336  Sum_probs=114.1

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHHHH---HHHHHHC-------CH------HHHHHHHHHH
Q ss_conf             11003787425888999974246----------997020585788---6444203-------32------4599999999
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGSDF---VELFVGV-------GA------SRVRDMFEQA  236 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s~~---~~~~~g~-------g~------~~vr~lf~~a  236 (647)
                      -+-.+|-||||||.+...+-.+.          ..+|+.+.|-.+   .+.|.+.       ..      ..++.-|...
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~  503 (767)
T KOG1514         424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP  503 (767)
T ss_pred             EEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             79984699988321299999999987750578986079871446158899999999975557430778899998654167


Q ss_pred             H-HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-C-CCCCC-CE
Q ss_conf             8-7378012063235641445578988626889889989985303235778299996298100883331-6-56423-14
Q gi|254780545|r  237 K-NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-R-PGRFD-RQ  312 (647)
Q Consensus       237 ~-~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-R-pgRfd-~~  312 (647)
                      + +..||||.|||+|.+..++           +-+|--|+ .+-- ..+..++|||-.|.-|....-|. | .-|++ ++
T Consensus       504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~f-dWpt-~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR  570 (767)
T KOG1514         504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIF-DWPT-LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR  570 (767)
T ss_pred             CCCCCCEEEEECCHHHHHCCC-----------HHHHHHHH-CCCC-CCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEE
T ss_conf             878787799963578773520-----------98897774-0776-7898669999516564779885431123306505


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHC-------CCCCHHHHHH
Q ss_conf             10001347889999999854887773211024544120379899--99999998764553202-------4210456899
Q gi|254780545|r  313 ITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGAD--LRNLVNEAALMAARRNR-------RLVTMQEFED  383 (647)
Q Consensus       313 i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAd--i~~~~~eAa~~a~r~~~-------~~i~~~dl~~  383 (647)
                      |.+.+=+...-.+|+.--+++...=.+--++-+|+.-.--||--  --.+|+.|+-.|-.+..       ..|++.|+.+
T Consensus       571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~  650 (767)
T KOG1514         571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME  650 (767)
T ss_pred             EECCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHH
T ss_conf             51377889999999998603154314248999998877504227888899899999754221345555332443299999


Q ss_pred             HHHHCCC
Q ss_conf             9750136
Q gi|254780545|r  384 AKDKILM  390 (647)
Q Consensus       384 A~~rv~~  390 (647)
                      |+..+..
T Consensus       651 Ai~em~~  657 (767)
T KOG1514         651 AINEMLA  657 (767)
T ss_pred             HHHHHHH
T ss_conf             9998750


No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.56  E-value=4.8e-07  Score=69.97  Aligned_cols=147  Identities=27%  Similarity=0.396  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHH-----
Q ss_conf             88985288999999999874335676642012333110037874258889999742469---9702058578864-----
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVE-----  219 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~-----  219 (647)
                      +|+.|...+-+.+.+.+      .++    ++.+.-||+.|.|||||+++|++|-....   -||+.++++.+-+     
T Consensus         6 ~~liG~S~~m~~v~~~~------~~~----A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~   75 (325)
T PRK11608          6 DNLLGEANSFLEVLEQV------SHL----APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS   75 (325)
T ss_pred             CCCEECCHHHHHHHHHH------HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf             99858999999999999------999----68899989889898379999999996588679997788779899778899


Q ss_pred             HHHHC------CHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCC---C----
Q ss_conf             44203------324-5999999998737801206323564144557898862688988998998530--323---5----
Q gi|254780545|r  220 LFVGV------GAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFE---S----  283 (647)
Q Consensus       220 ~~~g~------g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~---~----  283 (647)
                      ...|.      |+. +...+|+.|   ...-+|+|||+.+-..              .-.+||.-++  .|.   +    
T Consensus        76 ~LFG~~~g~~~~~~~~~~g~le~a---~gGTL~L~eI~~l~~~--------------~Q~~Ll~~l~~~~~~r~g~~~~~  138 (325)
T PRK11608         76 ELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPL  138 (325)
T ss_pred             HHCCCCCCCCCCCCCCCCCHHHCC---CCCEEEEECHHHCCHH--------------HHHHHHHHHHCCCEEECCCCCCC
T ss_conf             872775567677532468734356---8986997374547999--------------99999999864908857998766


Q ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHH
Q ss_conf             77829999629810088333165642314-------100013478899
Q gi|254780545|r  284 SEGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGRE  324 (647)
Q Consensus       284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~  324 (647)
                      .-+|=+|++||+.-   +.+..-|+|...       +.|.+|...+|.
T Consensus       139 ~~~~RiIa~t~~~l---~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~  183 (325)
T PRK11608        139 QVNVRLVCATNADL---PAMVNEGTFRADLLDRLAFDVVQLPPLRERQ  183 (325)
T ss_pred             CCCEEEEECCCHHH---HHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf             56468871332208---9999839567999856530111586845471


No 162
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54  E-value=1.1e-06  Score=67.48  Aligned_cols=210  Identities=26%  Similarity=0.355  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH----H
Q ss_conf             69889852889999999998743356766420123331100378742588899997424---6997020585788----6
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF----V  218 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~----~  218 (647)
                      .+.++.|.-.+-+.+.+.+.-      .    ++.+.-||+.|++||||.++|++|-..   .+-||+.++++.+    +
T Consensus       136 ~~~~liG~S~~m~~v~~~i~~------~----a~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~  205 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGR------L----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI  205 (469)
T ss_pred             CCCCCEECCHHHHHHHHHHHH------H----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
T ss_conf             755654689999999999999------8----588997899898982699999999974887799957876788997789


Q ss_pred             -HHHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-C
Q ss_conf             -44420------33245-99999999873780120632356414455789886268898899899853-----03235-7
Q gi|254780545|r  219 -ELFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES-S  284 (647)
Q Consensus       219 -~~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~-~  284 (647)
                       +...|      .|+.. ..-+|++|   ....+|+|||+.+-..          .. .-|-.+|.+-     .|... .
T Consensus       206 e~eLFG~~~gaf~ga~~~~~g~~e~a---~~GTLfLdeI~~L~~~----------~Q-~kLl~~L~~~~~~~~g~~~~~~  271 (469)
T PRK10923        206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLD----------VQ-TRLLRVLADGQFYRVGGYAPVK  271 (469)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHC---CCCCEEHHHHHHCCHH----------HH-HHHHHHHHCCCEEECCCCCEEE
T ss_conf             99970876678788642458736643---8992656636648999----------99-9999998559378579985122


Q ss_pred             CCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHH
Q ss_conf             7829999629810088333165642314-------1000134788999----999985488----77-732110245441
Q gi|254780545|r  285 EGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARG  348 (647)
Q Consensus       285 ~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~  348 (647)
                      ..+=+|++||+.=   ..+...|+|..-       +.|.+|-..+|.+    ++++++...    .. ...++-+.+...
T Consensus       272 ~d~RiIaat~~~L---~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L  348 (469)
T PRK10923        272 VDVRIIAATHQNL---EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL  348 (469)
T ss_pred             ECCEEEEECCCCH---HHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             1437997078799---9986608177999986442401584654465349999999999999985999787899999999


Q ss_pred             -HHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             -203798--9999999998764553202421045689997
Q gi|254780545|r  349 -TPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       349 -t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                       ...|-|  .+|+|++..+.+.+.   ...|+.+|+...+
T Consensus       349 ~~y~WPGNvrEL~n~ier~~~~~~---~~~i~~~dl~~~l  385 (469)
T PRK10923        349 TRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGEL  385 (469)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHCC---CCCCCHHHCCHHH
T ss_conf             749999879999999999998579---9825477572988


No 163
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=98.52  E-value=5.7e-07  Score=69.45  Aligned_cols=150  Identities=31%  Similarity=0.468  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC-----
Q ss_conf             988985288999999-99987433567664201233311003787425888999974246-------99702058-----
Q gi|254780545|r  147 FKDVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS-----  213 (647)
Q Consensus       147 f~dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~-----  213 (647)
                      |.=|.|+|..|.-|. -.|+.        +     --|||.-|.-||||+..||+++.=.       ||||=.-.     
T Consensus         3 F~AiVGQe~LK~ALLL~Av~P--------~-----iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~   69 (688)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVNP--------R-----IGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEE   69 (688)
T ss_pred             CCCCCCHHHHHHHHHHEEECC--------C-----CCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf             742214279865321002526--------6-----370788778886278988848761602366404788877788704


Q ss_pred             --------------------HHHHHHHHHHCCHHHHH-------------HHHH---HHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf             --------------------57886444203324599-------------9999---99873780120632356414455
Q gi|254780545|r  214 --------------------GSDFVELFVGVGASRVR-------------DMFE---QAKNNSPCIVFVDEIDAVGRHRG  257 (647)
Q Consensus       214 --------------------~s~~~~~~~g~g~~~vr-------------~lf~---~a~~~~p~iifiDeida~~~~r~  257 (647)
                                          .-.||++=+|.++-||=             ..|+   .|+.+- -|++||||-=|-    
T Consensus        70 ~C~~C~~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~Ahr-GiLYiDEVNLLd----  144 (688)
T TIGR02442        70 WCEECRRKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHR-GILYIDEVNLLD----  144 (688)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCC-CEEEEEEECCCC----
T ss_conf             006767555204775313587358865877523322130548999871856607886175468-716785200144----


Q ss_pred             CCCCCCCHHHHHHHHHHHH---------HHCCCCCC--CCEEEEEECC------CCCCCCHHHCCCCCCCCEEEECHHH-
Q ss_conf             7898862688988998998---------53032357--7829999629------8100883331656423141000134-
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLV---------EMDGFESS--EGVILIAATN------RPDVLDAALLRPGRFDRQITVPNPD-  319 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~---------~mdg~~~~--~~v~vi~aTn------~~~~lD~al~RpgRfd~~i~~~~P~-  319 (647)
                             |   +.+|-||-         |=||++-+  ...+.||+=|      ||+.||       ||--.|.|.=+. 
T Consensus       145 -------D---hlVD~lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG~LRPQLLD-------RFGL~V~v~~~~d  207 (688)
T TIGR02442       145 -------D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD-------RFGLCVDVAASRD  207 (688)
T ss_pred             -------C---HHHHHHHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHHHHCHHHHH-------HHHCEEEECCCCC
T ss_conf             -------1---4778999987648006763574300114553220378522110223242-------4401155024358


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             788999999985
Q gi|254780545|r  320 IVGREHILMVHS  331 (647)
Q Consensus       320 ~~~r~~i~~~~~  331 (647)
                      .+.|.+|.+.-+
T Consensus       208 ~~~R~Ev~~Rrl  219 (688)
T TIGR02442       208 PEERVEVIRRRL  219 (688)
T ss_pred             HHHHHHHHHHHH
T ss_conf             668999999997


No 164
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.52  E-value=4.5e-07  Score=70.19  Aligned_cols=194  Identities=28%  Similarity=0.385  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----HH
Q ss_conf             889852889999999998743356766420123331100378742588899997424---6997020585788-----64
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-----VE  219 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-----~~  219 (647)
                      .++.|.-.+-+.|++.+.-+          +..+--||+.|.+||||.++|++|-..   ++-||++++++.+     -+
T Consensus       186 ~elIG~S~~m~~l~~~i~~v----------A~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~Es  255 (510)
T PRK05022        186 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAES  255 (510)
T ss_pred             CCEEECCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf             97520899999999999999----------68999889889898139999999996688789985788899998567899


Q ss_pred             HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-C-C---CC----
Q ss_conf             4420------33245-999999998737801206323564144557898862688988998998530-3-2---35----
Q gi|254780545|r  220 LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-G-F---ES----  283 (647)
Q Consensus       220 ~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g-~---~~----  283 (647)
                      ...|      .||.. -.-.|+.|.   ...+|+|||+.+-..           - |  ..||--++ | |   .+    
T Consensus       256 eLFGh~kGaFtGA~~~r~G~fe~A~---gGTLfLDEI~~Lpl~-----------~-Q--~KLLrvLq~g~iqrvG~~~~~  318 (510)
T PRK05022        256 ELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA-----------L-Q--AKLLRVLQYGEIQRVGSDRSL  318 (510)
T ss_pred             HHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEECHHHCCHH-----------H-H--HHHHHHHHCCEEEECCCCCEE
T ss_conf             8659777886886556788101778---987987574549999-----------9-9--999999847958855899466


Q ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HHH---HHHHCCC--CCC---CCCCHHHHHH
Q ss_conf             778299996298100883331656423-------14100013478899-999---9985488--777---3211024544
Q gi|254780545|r  284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HIL---MVHSRNV--PLA---PNVILKTIAR  347 (647)
Q Consensus       284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i~---~~~~~~~--~~~---~~~d~~~la~  347 (647)
                      .-+|=||||||+.  | ....+-|||-       -.+.|.+|-..+|. +|.   .++++..  .+.   ..++-+.+..
T Consensus       319 ~vdvRIIAATnrd--L-~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~  395 (510)
T PRK05022        319 RVDVRVIAATNRD--L-REEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAA  395 (510)
T ss_pred             EEEEEEEEECCCC--H-HHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             6668999607835--9-999883963899998762040348086555540999999999999998298989888999999


Q ss_pred             H-HHCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf             1-203798--99999999987645532
Q gi|254780545|r  348 G-TPGFSG--ADLRNLVNEAALMAARR  371 (647)
Q Consensus       348 ~-t~g~sg--Adi~~~~~eAa~~a~r~  371 (647)
                      . .-.|-|  .+|+|++..|++.|...
T Consensus       396 L~~Y~WPGNVRELenvIeRA~lla~~~  422 (510)
T PRK05022        396 LLQYDWPGNVRELEHVISRAALLARAR  422 (510)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             970999978999999999999971566


No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.51  E-value=7.4e-07  Score=68.60  Aligned_cols=124  Identities=16%  Similarity=0.267  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC---CHH
Q ss_conf             899999999987433-567664201233311003787425888999974246---9970205857886444203---324
Q gi|254780545|r  155 EAKEDLQEIVDFLCD-PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV---GAS  227 (647)
Q Consensus       155 ~~k~~~~~~v~~l~~-~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~---g~~  227 (647)
                      ...+-++.++++.++ .+.|   + +.-.++||+||||||||.||-|||+|+   |.+.++++.++|++.+-..   ...
T Consensus       160 sprenm~~i~~~~~~fi~~F---~-~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~~~~  235 (330)
T PRK06835        160 SPRENMENILEKCLNFIKNF---D-KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFNNDN  235 (330)
T ss_pred             CHHHHHHHHHHHHHHHHHHC---C-CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCC
T ss_conf             98999999999999998724---7-8888669889999988999999999999879949996299999999997545764


Q ss_pred             HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             5999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r  228 RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD  297 (647)
Q Consensus       228 ~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~  297 (647)
                      ..+++++.- ..+ -++.||++-+   ..      .++   .+.++|...+|.= -..+-=+|-+||.+-
T Consensus       236 ~~~~~~~~l-~~~-DLLIIDDLG~---E~------~t~---~~~~~Lf~iIN~R-~~~~k~tIITTNl~~  290 (330)
T PRK06835        236 DAPELEDLL-INC-DLLIIDDLGT---ES------ITE---FSKTELFNLINKR-LLMNKKMIISTNLSL  290 (330)
T ss_pred             CHHHHHHHH-HHC-CEEEEECCCC---CC------CCH---HHHHHHHHHHHHH-HHCCCCEEEECCCCH
T ss_conf             489999999-618-9899721034---55------886---8999999999999-867999799889998


No 166
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491   This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome.    ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=98.51  E-value=1.1e-07  Score=74.60  Aligned_cols=89  Identities=35%  Similarity=0.583  Sum_probs=68.1

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             6988-985288999999999874335676642012-----3331100378742588899997424699702058578864
Q gi|254780545|r  146 TFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       146 ~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      ..|. |.|+++||.-+.   --|+|.-+=..|--.     .||.||+.||-|.|||=+||-+|.=++.||+.+-+|-|-|
T Consensus         9 ~LD~yIiGQ~~AKk~VA---iALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTE   85 (463)
T TIGR00390         9 ELDKYIIGQDEAKKAVA---IALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   85 (463)
T ss_pred             HHCCCCCCHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             51442206366788999---998866776128711135658743043278898544799999998448914666410011


Q ss_pred             H-HHH-CCHHHHHHHHHHHH
Q ss_conf             4-420-33245999999998
Q gi|254780545|r  220 L-FVG-VGASRVRDMFEQAK  237 (647)
Q Consensus       220 ~-~~g-~g~~~vr~lf~~a~  237 (647)
                      . ||| .=+|-||||-+.|-
T Consensus        86 VGYVGrdVeSmvRDL~~~aV  105 (463)
T TIGR00390        86 VGYVGRDVESMVRDLVDTAV  105 (463)
T ss_pred             CCEECCCHHHHHHHHHHHHH
T ss_conf             02142410036787899999


No 167
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49  E-value=8.5e-07  Score=68.16  Aligned_cols=199  Identities=29%  Similarity=0.433  Sum_probs=112.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHH
Q ss_conf             2422569889852889999999998743356766420123331100378742588899997424----699702058578
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSD  216 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~  216 (647)
                      .-..-.|+|+.|....-+++.|-+.      .|...|    .-||+.|++||||+++|++|...    ++-||++++++.
T Consensus        71 ~~~~~~~~~LIG~~~~~~~~~eqik------~~ap~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~  140 (403)
T COG1221          71 YLKSEALDDLIGESPSLQELREQIK------AYAPSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA  140 (403)
T ss_pred             HCCCHHHHHHHCCCHHHHHHHHHHH------HHCCCC----CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf             1022156666356888999999998------618999----847986688753889999999861213589879977777


Q ss_pred             HHHHHH-----H------CCH-HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC----
Q ss_conf             864442-----0------332-459999999987378012063235641445578988626889889989985303----
Q gi|254780545|r  217 FVELFV-----G------VGA-SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG----  280 (647)
Q Consensus       217 ~~~~~~-----g------~g~-~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg----  280 (647)
                      +-+--.     |      .|+ ..-.-+|++|   ---++|+|||--+-       ..+       .-.||.-||-    
T Consensus       141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP-------~~~-------Q~kLl~~le~g~~~  203 (403)
T COG1221         141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLP-------PEG-------QEKLLRVLEEGEYR  203 (403)
T ss_pred             HCCCHHHHHHHCCCCCEEECCCCCCCCHHEEC---CCCEEEHHHHHHCC-------HHH-------HHHHHHHHHCCCEE
T ss_conf             37677777773200000025667867642052---79777656365379-------858-------99999998718657


Q ss_pred             -CCC----CCCEEEEEECCCCCCCCHHHCC-CCCCC--CEEEECHHHHHHHH-HH-------HHHHHCCCCCCCCCCHHH
Q ss_conf             -235----7782999962981008833316-56423--14100013478899-99-------999854887773211024
Q gi|254780545|r  281 -FES----SEGVILIAATNRPDVLDAALLR-PGRFD--RQITVPNPDIVGRE-HI-------LMVHSRNVPLAPNVILKT  344 (647)
Q Consensus       281 -~~~----~~~v~vi~aTn~~~~lD~al~R-pgRfd--~~i~~~~P~~~~r~-~i-------~~~~~~~~~~~~~~d~~~  344 (647)
                       ..+    ...|-+|+|||-  .++.++++ ..=+.  -.+.|.+|...+|. +|       ++.+++.+.+..-++...
T Consensus       204 rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~  281 (403)
T COG1221         204 RVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE  281 (403)
T ss_pred             ECCCCCCCCCCCEEEECCCC--CHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             66888886777404513566--8799987405255641675431897243555599999999999999739998888899


Q ss_pred             HHHHHHCC--CH--HHHHHHHHHHHHHH
Q ss_conf             54412037--98--99999999987645
Q gi|254780545|r  345 IARGTPGF--SG--ADLRNLVNEAALMA  368 (647)
Q Consensus       345 la~~t~g~--sg--Adi~~~~~eAa~~a  368 (647)
                      ..+....|  .|  -+|.|+|..+...+
T Consensus       282 a~~~L~~y~~pGNirELkN~Ve~~~~~~  309 (403)
T COG1221         282 ALRALLAYDWPGNIRELKNLVERAVAQA  309 (403)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999984889983999999999999973


No 168
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.46  E-value=4.2e-07  Score=70.38  Aligned_cols=210  Identities=30%  Similarity=0.432  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH-
Q ss_conf             225698898528899999999987433567664201233311003787425888999974246---9970205857886-
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV-  218 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~-  218 (647)
                      ..-+|+||.|-..+-.++.+.          .+..++.+--||+.|.+||||-|+|++|-+..   +-||+++.+.-+- 
T Consensus       240 a~y~f~~Iig~S~~m~~~~~~----------akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe  309 (560)
T COG3829         240 AKYTFDDIIGESPAMLRVLEL----------AKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE  309 (560)
T ss_pred             CCCCHHHHCCCCHHHHHHHHH----------HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf             536610020589999999999----------9863389982899537886689999998744843479807876433888


Q ss_pred             ----HHHHH------CCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHH--CCCCC
Q ss_conf             ----44420------33245--999999998737801206323564144557898862688988-99899853--03235
Q gi|254780545|r  219 ----ELFVG------VGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLVEM--DGFES  283 (647)
Q Consensus       219 ----~~~~g------~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~~m--dg~~~  283 (647)
                          +-..|      .||.+  =.-+|+.|.   .--+|+|||-.+-.         +   -|. |-..|.|=  -...+
T Consensus       310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl---------~---LQaKLLRVLQEkei~rvG~  374 (560)
T COG3829         310 TLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPL---------P---LQAKLLRVLQEKEIERVGG  374 (560)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEHHHCCCCH---------H---HHHHHHHHHHHCEEEECCC
T ss_conf             8888887276776424644579976054416---98377123203998---------9---9999999875353785378


Q ss_pred             C----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH-H--H-----HHHHCCC----C-CCCC
Q ss_conf             7----782999962981008833316564231-------41000134788999-9--9-----9985488----7-7732
Q gi|254780545|r  284 S----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH-I--L-----MVHSRNV----P-LAPN  339 (647)
Q Consensus       284 ~----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~-i--~-----~~~~~~~----~-~~~~  339 (647)
                      .    -.|=||||||+.=   .-+..-|||-+       .+.+.+|-..+|.+ |  |     +.|.++.    + ++++
T Consensus       375 t~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~  451 (560)
T COG3829         375 TKPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD  451 (560)
T ss_pred             CCCEEEEEEEEECCCCCH---HHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             875356789994257589---99986396165530030401114777233820189999999999998728876668999


Q ss_pred             CCHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHH
Q ss_conf             110245441203798--9999999998764553202421045689-997
Q gi|254780545|r  340 VILKTIARGTPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFE-DAK  385 (647)
Q Consensus       340 ~d~~~la~~t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~-~A~  385 (647)
                      + +..|.+.  -|-|  .+|+|++-.+.+.+  .+...|+..|+- .++
T Consensus       452 a-~~~L~~y--~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l  495 (560)
T COG3829         452 A-LALLLRY--DWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL  495 (560)
T ss_pred             H-HHHHHHC--CCCCHHHHHHHHHHHHHHCC--CCCCEEEHHHCCHHHH
T ss_conf             9-9999868--99960999999999998106--8866222522620231


No 169
>KOG2680 consensus
Probab=98.44  E-value=3.8e-06  Score=63.45  Aligned_cols=185  Identities=24%  Similarity=0.369  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf             88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g  225 (647)
                      .-..|+-.+....--++...++       |--.-|.+|+.||||||||-+|-.+|.+.|  +||-+++||++.+.-..-+
T Consensus        40 ~GmVGQ~~AR~Aagvi~kmi~e-------gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKT  112 (454)
T KOG2680          40 EGMVGQVKARKAAGVILKMIRE-------GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKT  112 (454)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHC-------CCCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEEEECCCHH
T ss_conf             6631158888876799999872-------863213899724898884410000245407887503650222221000177


Q ss_pred             HHHHHHHHHHHHHHCCHHEEHHHHHHH-------HCCCCCCCCCCC--------HHHHHHH----HHHHHHHCCCC-CCC
Q ss_conf             245999999998737801206323564-------144557898862--------6889889----98998530323-577
Q gi|254780545|r  226 ASRVRDMFEQAKNNSPCIVFVDEIDAV-------GRHRGIGLGGGN--------DEREQTL----NQLLVEMDGFE-SSE  285 (647)
Q Consensus       226 ~~~vr~lf~~a~~~~p~iifiDeida~-------~~~r~~~~~~~~--------~e~~~~l----n~ll~~mdg~~-~~~  285 (647)
                      ++ +    .+|-..+--|-+=.|-+.|       --.|.....|..        .+-| |+    +.+...++-=. ...
T Consensus       113 EA-l----tQAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g~k~GKlt~kTtdME-t~ydlG~Kmi~~l~KeKV~aG  186 (454)
T KOG2680         113 EA-L----TQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMGSKVGKLTLKTTDME-TIYDLGMKMIESLTKEKVQAG  186 (454)
T ss_pred             HH-H----HHHHHHHHCEEEEHEEEEECCEEEEEEEECCCCCCCCCCCEEEEEECCHH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf             99-9----99988851647400001430058999960466676764444677521115-588788999877657533678


Q ss_pred             CEEEEE-ECCCCCCCCHHHCCCCCCC----CEEEECHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             829999-6298100883331656423----14100013478--8999999985488777321102454412037
Q gi|254780545|r  286 GVILIA-ATNRPDVLDAALLRPGRFD----RQITVPNPDIV--GREHILMVHSRNVPLAPNVILKTIARGTPGF  352 (647)
Q Consensus       286 ~v~vi~-aTn~~~~lD~al~RpgRfd----~~i~~~~P~~~--~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~  352 (647)
                      .||.|- |+-+...|-..+.|++++|    ..=+|.-|+-+  -|++..  |.  ..+   -+++.+-.+|.||
T Consensus       187 DVI~idka~GkitKlGrSf~rsrdyDamG~~tkfVqCPeGElqkrkevv--ht--vsL---HeIDViNSrtqG~  253 (454)
T KOG2680         187 DVITIDKASGKITKLGRSFTRSRDYDAMGSQTKFVQCPEGELQKRKEVV--HT--VSL---HEIDVINSRTQGF  253 (454)
T ss_pred             CEEEEECCCCEEEHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHEEEEE--EE--EEE---CCCCCCCCCCCCE
T ss_conf             5599870246300210120103467765776514239931441002335--76--430---0013345566524


No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.44  E-value=2.3e-06  Score=65.08  Aligned_cols=134  Identities=23%  Similarity=0.315  Sum_probs=93.3

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHH--H--CCHHHHHHHHHHHH
Q ss_conf             123331100378742588899997424699-------7---------02058578864442--0--33245999999998
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFV--G--VGASRVRDMFEQAK  237 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~--g--~g~~~vr~lf~~a~  237 (647)
                      .|.|.+.||.||+|+||+.+|+++|...-+       |         +-+-+.+||...--  |  .|-..||++-+.+.
T Consensus        20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~   99 (324)
T PRK06871         20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVS   99 (324)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             99543787689999789999999999982899999998888989999973899987998467888788999999999986


Q ss_pred             HH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEE
Q ss_conf             73----78012063235641445578988626889889989985303235778299996298100883331656423141
Q gi|254780545|r  238 NN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQI  313 (647)
Q Consensus       238 ~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i  313 (647)
                      ..    .--|++||+.|.+-              ++.-|.||--+.  +...++++|-.|++|+.|-|-++=  |- .++
T Consensus       100 ~~~~~g~~KV~iI~~ae~m~--------------~~AaNALLKtLE--EPp~~~~fiL~t~~~~~ll~TI~S--RC-q~~  160 (324)
T PRK06871        100 QFAQQGGNKVVYIQGAERLT--------------EAAANALLKTLE--EPRPNTYFLLQADLSASLLATIYS--RC-QTW  160 (324)
T ss_pred             HCCCCCCCEEEEECCHHHHH--------------HHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCHHHH--CC-CCE
T ss_conf             46220596699975888857--------------999999999833--898783899987870103240862--66-120


Q ss_pred             EECHHHHHHHHHHHHHH
Q ss_conf             00013478899999998
Q gi|254780545|r  314 TVPNPDIVGREHILMVH  330 (647)
Q Consensus       314 ~~~~P~~~~r~~i~~~~  330 (647)
                      .++.|+.+.-.+-|+-.
T Consensus       161 ~~~~p~~~~~~~wL~~~  177 (324)
T PRK06871        161 LIHVPEEQIALDWLQAQ  177 (324)
T ss_pred             ECCCCCHHHHHHHHHHH
T ss_conf             08994999999999974


No 171
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.42  E-value=2.4e-06  Score=64.96  Aligned_cols=227  Identities=21%  Similarity=0.276  Sum_probs=126.7

Q ss_pred             CCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------C
Q ss_conf             112422569889852--8899999999987433567664201233311003787425888999974246----------9
Q gi|254780545|r  139 SGNVGSVTFKDVAGV--DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------N  206 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~--~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~  206 (647)
                      .+.-++.+..+|.-.  .---+|.++|..|+...-+  .-|  .-.-+-.+|.||||||...+.+..+.          .
T Consensus       253 ~~~~~~lk~~~~vpe~lpcRe~E~~~I~~Fie~~i~--q~G--tG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~  328 (650)
T PTZ00112        253 KPIIDKLKLQLVVPEYILGREKEAKEIRTFLETGIK--QGG--TGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPW  328 (650)
T ss_pred             EECCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             203520110125774477707899999999986411--688--6656999789999800369999999999997089998


Q ss_pred             CCEECCCH----------HHHHHHHHHCCH-------HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             97020585----------788644420332-------4599999999873780120632356414455789886268898
Q gi|254780545|r  207 VPFFTISG----------SDFVELFVGVGA-------SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ  269 (647)
Q Consensus       207 ~~f~~~~~----------s~~~~~~~g~g~-------~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~  269 (647)
                      ..|+.+.|          +.+.+...|.-+       .-+...|..  ...|||+.+||+|.+.-++-.           
T Consensus       329 F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F~~--~r~p~VlLvDELD~LvTkkQ~-----------  395 (650)
T PTZ00112        329 FNLFEINGVNLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLFNN--NRTPSILIVDEADYIVTKTQK-----------  395 (650)
T ss_pred             CEEEEECCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCCCEEEEECHHHHHHHCCCC-----------
T ss_conf             1599973637798788999999998489888678999999998268--997189997157777636774-----------


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCC---CCCCCHHHCCCCCCC-CEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             89989985303235778299996298---100883331656423-14100013478899999998548877732110245
Q gi|254780545|r  270 TLNQLLVEMDGFESSEGVILIAATNR---PDVLDAALLRPGRFD-RQITVPNPDIVGREHILMVHSRNVPLAPNVILKTI  345 (647)
Q Consensus       270 ~ln~ll~~mdg~~~~~~v~vi~aTn~---~~~lD~al~RpgRfd-~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~l  345 (647)
                      ++=-|+ ..-. ..+...||||-.|-   |+.|-|-+.  .|+- .++.+.+=+.+.-.+|+..-+.+...=++--+.-.
T Consensus       396 VlYNLF-dWPT-~~~SkLIVIaIANTMDLPERL~~RVs--SRLGltRltF~PYt~~QL~eII~sRL~~~~~f~~dAIQl~  471 (650)
T PTZ00112        396 VLFTLF-DWPT-KKNSKLILIIISNTMDLPYKMKPSCR--SRLAFGRLVFSPYKYQQIEKVIKERLENCEIIDHTALQLC  471 (650)
T ss_pred             EEEECC-CCCC-CCCCEEEEEEEEECCCCCHHHHHHHH--HHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             577736-6889-88870799998506786065666655--5228850043998999999999998626777887899999


Q ss_pred             HHHHHCCCHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf             44120379899999--999987645532024210456899975013
Q gi|254780545|r  346 ARGTPGFSGADLRN--LVNEAALMAARRNRRLVTMQEFEDAKDKIL  389 (647)
Q Consensus       346 a~~t~g~sgAdi~~--~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~  389 (647)
                      |+.-...||--=..  +|+.|--.+   +...|+..|+..|.+.+.
T Consensus       472 ARKVAavSGDARRALdICRRAvE~~---~~~ki~~~~i~~a~n~~~  514 (650)
T PTZ00112        472 ARRVTNYSGDMRKALQICKLAFENK---NGGKITPRDMTRASNMVL  514 (650)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHC---CCCEEEHHHHHHHHHHHH
T ss_conf             8888750314899999999999735---687342489999988885


No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.42  E-value=4.3e-07  Score=70.31  Aligned_cols=72  Identities=24%  Similarity=0.417  Sum_probs=48.7

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             33311003787425888999974246---997020585788644420332-45999999998737801206323564
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeida~  252 (647)
                      -+++++|+||||||||.||-|+|.++   |++.+.++.++|+...-..-. -+.-.-+..--++ .-+++||||-+.
T Consensus       104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~-~dlLIiDDlG~~  179 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK-VDLLIIDDIGYE  179 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf             5882899899998799999999999998398499988599999999987455268999988752-898998236776


No 173
>PRK09183 transposase/IS protein; Provisional
Probab=98.40  E-value=9.3e-07  Score=67.88  Aligned_cols=101  Identities=23%  Similarity=0.399  Sum_probs=61.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf             3311003787425888999974246---9970205857886444203-32459999999987378012063235641445
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR  256 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r  256 (647)
                      ...|+|+||||||||.||-|++.++   |.+..+++.+++++.+.-. ...+....+.+. -..|-++.|||+--.-.  
T Consensus       101 ~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~-l~~~dLLIiDdlG~~~~--  177 (258)
T PRK09183        101 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF--  177 (258)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-HCCCCEEEEHHHHCCCC--
T ss_conf             886799899998689999999999998799399978999999999998768599999987-43465144313315468--


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             5789886268898899899853032357782999962981
Q gi|254780545|r  257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                             +.+..+.+=|++.+-   -.. +-++| +||.|
T Consensus       178 -------~~~~~~~lfeli~~R---ye~-~S~Ii-TSn~~  205 (258)
T PRK09183        178 -------SQEEANLFFQVIAKR---YEK-GAMIL-TSNLP  205 (258)
T ss_pred             -------CHHHHHHHHHHHHHH---HCC-CCEEE-ECCCC
T ss_conf             -------888999999999998---576-77899-88999


No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.37  E-value=4.1e-06  Score=63.25  Aligned_cols=133  Identities=27%  Similarity=0.401  Sum_probs=84.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC----CEE---------CCCHHHHHHHH-----HH------CCHHHHHHH
Q ss_conf             0123331100378742588899997424699----702---------05857886444-----20------332459999
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV----PFF---------TISGSDFVELF-----VG------VGASRVRDM  232 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~----~f~---------~~~~s~~~~~~-----~g------~g~~~vr~l  232 (647)
                      ..++|.+.||+||+|+||+.+|+++|...-+    +..         .-+.+|+....     .|      .+-..||++
T Consensus        22 ~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l  101 (319)
T PRK08769         22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI  101 (319)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             69942068758999878999999999998379979765433889996689989687753444454311234869999999


Q ss_pred             HHHHHHHC----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC
Q ss_conf             99998737----80120632356414455789886268898899899853032357782999962981008833316564
Q gi|254780545|r  233 FEQAKNNS----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR  308 (647)
Q Consensus       233 f~~a~~~~----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR  308 (647)
                      -+......    .-|+.||+.|.+-              .+.-|.||.-+.  +...++++|-.|+.++.|-|.+.=  |
T Consensus       102 ~~~~~~~p~~g~~KV~IId~Ad~mn--------------~~AaNalLK~LE--EPp~~~~~iL~~~~~~~ll~TI~S--R  163 (319)
T PRK08769        102 SQKLALTPQYGIAQVVIVDPADAIN--------------RSACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--R  163 (319)
T ss_pred             HHHHHHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHH--C
T ss_conf             9996137202795699980667528--------------999999999822--799884899986993658247764--8


Q ss_pred             CCCEEEECHHHHHHHHHHHH
Q ss_conf             23141000134788999999
Q gi|254780545|r  309 FDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       309 fd~~i~~~~P~~~~r~~i~~  328 (647)
                       =++|.++.|..++-.+-|.
T Consensus       164 -Cq~~~~~~p~~~~~~~~L~  182 (319)
T PRK08769        164 -CQRLEFKLPPAHEALAWLL  182 (319)
T ss_pred             -CEEECCCCCCHHHHHHHHH
T ss_conf             -5011189969999999999


No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.36  E-value=2.7e-06  Score=64.54  Aligned_cols=133  Identities=25%  Similarity=0.338  Sum_probs=92.1

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHHH-----CCHHHHHHHHHHH
Q ss_conf             123331100378742588899997424699-------7---------020585788644420-----3324599999999
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFVG-----VGASRVRDMFEQA  236 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a  236 (647)
                      .|.|...||+||+|+||+.+|+++|.-.-+       |         +-.-+.+||....--     .+-..||+|-+.+
T Consensus        19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~   98 (328)
T PRK05707         19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFV   98 (328)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             98220464479998679999999999984899999899988889999875899987998426667769799999999998


Q ss_pred             HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf             873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r  237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ  312 (647)
Q Consensus       237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~  312 (647)
                      ...    ..=|+.||+.|.+-              .+.-|.||--+.  +..+++++|=.|+.|+.|-|-++=  |-- +
T Consensus        99 ~~~~~~g~~KV~iI~~Ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~  159 (328)
T PRK05707         99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLE--EPSGQTVLLLISHQPSRLLPTIKS--RCQ-Q  159 (328)
T ss_pred             HHCCCCCCCEEEEEEHHHHHC--------------HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--CCE-E
T ss_conf             317667895799950287738--------------999999999850--789875999860993448258874--141-3


Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             10001347889999999
Q gi|254780545|r  313 ITVPNPDIVGREHILMV  329 (647)
Q Consensus       313 i~~~~P~~~~r~~i~~~  329 (647)
                      +.++.|+.+.-..-|.-
T Consensus       160 ~~~~~p~~e~~~~~L~~  176 (328)
T PRK05707        160 LACPLPSNEPSLQWLQQ  176 (328)
T ss_pred             EECCCCCHHHHHHHHHH
T ss_conf             34899899999999997


No 176
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.36  E-value=2.5e-06  Score=64.82  Aligned_cols=137  Identities=23%  Similarity=0.266  Sum_probs=77.2

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-ECCCHHHHHHH-------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             2333110037874258889999742469970-20585788644-------420332459999999987378012063235
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPF-FTISGSDFVEL-------FVGVGASRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f-~~~~~s~~~~~-------~~g~g~~~vr~lf~~a~~~~p~iifiDeid  250 (647)
                      .+|||+-|||+.|+|||||--..-..+.++= .-+-=-+|+..       +-| +...+..+-+.-.+. --+++|||+.
T Consensus        59 ~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~-~~dpl~~va~~l~~~-~~lLCfDEFq  136 (361)
T pfam03969        59 QPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQG-GDDPLPIAADRFANE-ARLLCFDEFE  136 (361)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC-CCEEEEEEEE
T ss_conf             99986898899888699999999986775344456678999999999999766-776389999999725-8779976356


Q ss_pred             H--HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             6--41445578988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r  251 A--VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       251 a--~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
                      .  ||           |  --.|..|+..+    -..||+++++.|++    |.=|=++.+-|.-++|.      .++++
T Consensus       137 V~DIa-----------D--AMIL~rLf~~L----f~~gvvlV~TSN~~----P~~LY~~GLqR~~FlPf------I~ll~  189 (361)
T pfam03969       137 VDDIG-----------D--AMILGRLFEAL----FARGVSLVATSNTA----PEQLYRNGLNRQRFLPA------IDLLE  189 (361)
T ss_pred             ECCHH-----------H--HHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHHHH
T ss_conf             16788-----------8--99999999999----97797899808999----89983687417788999------99999


Q ss_pred             HHHCCCCCCCCCCHHH
Q ss_conf             9854887773211024
Q gi|254780545|r  329 VHSRNVPLAPNVILKT  344 (647)
Q Consensus       329 ~~~~~~~~~~~~d~~~  344 (647)
                      -|+.-..++.+.|+..
T Consensus       190 ~~~~v~~l~~~~DYR~  205 (361)
T pfam03969       190 SHFEVVRVDGPVDYRL  205 (361)
T ss_pred             HHCEEEEECCCCCCCC
T ss_conf             8678998159878054


No 177
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.35  E-value=1.1e-06  Score=67.37  Aligned_cols=101  Identities=25%  Similarity=0.396  Sum_probs=61.9

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf             33311003787425888999974246---9970205857886444203-3245999999998737801206323564144
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~  255 (647)
                      -...++|+||||||||.||-|++.++   |.+..+++.+++++.+... ......++++.  -..+-++.|||+-.   .
T Consensus        46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~l~~--~~~~dlLIiDDlG~---~  120 (178)
T pfam01695        46 QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGRLARTLQR--LAKADLLILDDIGY---L  120 (178)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEEHHCC---C
T ss_conf             587689989999878999999999999869859999616799999987526749999999--62589788720016---5


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             55789886268898899899853032357782999962981
Q gi|254780545|r  256 RGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       256 r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      .      ..++..+.+-+++.+-.   .+.. ++| +||.|
T Consensus       121 ~------~s~~~~~~lf~li~~Ry---e~~s-tIi-TSN~~  150 (178)
T pfam01695       121 P------LSQEAAHLLFELISDRY---ERRS-TIL-TSNLP  150 (178)
T ss_pred             C------CCHHHHHHHHHHHHHHH---CCCC-EEE-ECCCC
T ss_conf             6------89899999999999997---5688-687-76899


No 178
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.34  E-value=1.6e-07  Score=73.47  Aligned_cols=48  Identities=44%  Similarity=0.715  Sum_probs=32.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             22569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..-=|+||.|++++|.-|.=..           -|   -..+||.|||||||||||+.+-|=
T Consensus       189 ~~~DL~dv~GQ~~akRAleIAa-----------AG---GHNlll~GPPGsGKTmla~r~~gi  236 (505)
T TIGR00368       189 IDLDLKDVKGQQHAKRALEIAA-----------AG---GHNLLLLGPPGSGKTMLASRLQGI  236 (505)
T ss_pred             HHCCCCCCCCHHHCCHHHHHHH-----------HC---CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             1044322545101102677753-----------13---564376782496268999875105


No 179
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34  E-value=4.7e-06  Score=62.77  Aligned_cols=142  Identities=17%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEC----CC-HHHHHHHHH-HCC--HHHHHHHH
Q ss_conf             99987433567664201233311003787425888999974246997020----58-578864442-033--24599999
Q gi|254780545|r  162 EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFT----IS-GSDFVELFV-GVG--ASRVRDMF  233 (647)
Q Consensus       162 ~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~----~~-~s~~~~~~~-g~g--~~~vr~lf  233 (647)
                      .|+..|+|.-+-    .++|...||+||+|+|||.+|+.+|....++--.    .. .++....-+ +..  -.++|++-
T Consensus         5 ~iv~~L~nai~~----~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~~~i   80 (303)
T PRK07132          5 NIIKSLDNLAKQ----NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFLSAI   80 (303)
T ss_pred             HHHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf             899999999984----9976168867899867999999999997299878887545653230413322200168899999


Q ss_pred             HHHHHHC-----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCC
Q ss_conf             9998737-----8012063235641445578988626889889989985303235778299996298100883331-656
Q gi|254780545|r  234 EQAKNNS-----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPG  307 (647)
Q Consensus       234 ~~a~~~~-----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-Rpg  307 (647)
                      +......     .-|+.|||+|.+.              .+..|.||--+.  ++..+|+.|-+|+.|+.+-|.++ |.-
T Consensus        81 ~~~~~~~~~~~~~Kv~IIdea~~lt--------------~~A~NaLLKtLE--EPp~~~~fil~t~~~~~il~TI~SRCq  144 (303)
T PRK07132         81 EKFSFSSFVSNQKKILIIKNIEKTS--------------NSSLNALLKTIE--EPSKNTYFLLTTKNINKVIPTIVSRCQ  144 (303)
T ss_pred             HHHHHCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHCC--CCCCCEEEEEEECCHHHCCHHHHHCCE
T ss_conf             9997366556870699981655339--------------999999998703--898684899972882438377863665


Q ss_pred             CCCCEEEECHHHHHHHHHHH
Q ss_conf             42314100013478899999
Q gi|254780545|r  308 RFDRQITVPNPDIVGREHIL  327 (647)
Q Consensus       308 Rfd~~i~~~~P~~~~r~~i~  327 (647)
                      |||    +..++.+.-.+.|
T Consensus       145 ~~~----f~~~~~~~i~~~l  160 (303)
T PRK07132        145 VIN----VKEPDQQKILAKL  160 (303)
T ss_pred             EEE----CCCCCHHHHHHHH
T ss_conf             663----7889999999999


No 180
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.33  E-value=8.5e-06  Score=60.94  Aligned_cols=210  Identities=22%  Similarity=0.345  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCCHHH
Q ss_conf             9889852889999999998743--3567664201233-311003787425888999974246-------99702058578
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLC--DPQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTISGSD  216 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~--~~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~~s~  216 (647)
                      =.+..|+.-+|..++++-..|-  .-.+-..+....| -.+-|.|.||||||..|.-+|.=.       .-..++++-.|
T Consensus        21 ~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trdd  100 (284)
T TIGR02880        21 DRELIGLKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD  100 (284)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH
T ss_conf             67621641588999999999999999987422104883267751689872489999999999871540036267853001


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             86444203324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      ++..|+|-++-+-+++..+|   ...|+||||.--+-+.....     |.....+.-||..|.  +..+.++||-|- ..
T Consensus       101 lvGqy~GhtaPktke~lk~a---~GGvlfideayyly~P~ner-----dyG~eaieillq~me--n~r~~lvvi~aG-y~  169 (284)
T TIGR02880       101 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER-----DYGQEAIEILLQVME--NQRDDLVVILAG-YK  169 (284)
T ss_pred             HHHHHHCCCCCHHHHHHHHH---CCCEEEEECHHHHCCCCCCC-----HHHHHHHHHHHHHHH--CCCCCEEEEEEC-CH
T ss_conf             31122125772268999874---28736642203321776410-----223799999999872--365537888717-07


Q ss_pred             CCCCHHHC-CCC---CCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCC---C--CHHHHHHHHHCCCHH-HHHHHHHHH
Q ss_conf             00883331-656---4231410001347889999999854887--7732---1--102454412037989-999999998
Q gi|254780545|r  297 DVLDAALL-RPG---RFDRQITVPNPDIVGREHILMVHSRNVP--LAPN---V--ILKTIARGTPGFSGA-DLRNLVNEA  364 (647)
Q Consensus       297 ~~lD~al~-Rpg---Rfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~---~--d~~~la~~t~g~sgA-di~~~~~eA  364 (647)
                      |.+|.-.- .||   |.-.||.+|--..++-..|-.+.+....  ++..   +  ++-.+-+..|-|+-| .+.|.+..+
T Consensus       170 ~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~  249 (284)
T TIGR02880       170 DRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRNALDRA  249 (284)
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             88888751178624677643158887767899999998865412111889999999999863178314678899999889


Q ss_pred             HHH
Q ss_conf             764
Q gi|254780545|r  365 ALM  367 (647)
Q Consensus       365 a~~  367 (647)
                      .+.
T Consensus       250 rlr  252 (284)
T TIGR02880       250 RLR  252 (284)
T ss_pred             HHH
T ss_conf             888


No 181
>PRK06526 transposase; Provisional
Probab=98.32  E-value=1.5e-06  Score=66.34  Aligned_cols=100  Identities=23%  Similarity=0.371  Sum_probs=61.4

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHH-CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf             3311003787425888999974246---997020585788644420-332459999999987378012063235641445
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVG-VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR  256 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g-~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r  256 (647)
                      ...++|+||||||||.||-|++.+|   |.+..+++.+++++.+.- ....+...++.+  -..+-++.|||+-..--  
T Consensus        98 ~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~--l~~~dLLIiDe~g~~~~--  173 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQDELVK--LGRIPLLIVDEVGYIPF--  173 (254)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEECCCCCCC--
T ss_conf             88789989999868999999999999869967998779999999998855809999998--51368776502136447--


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             5789886268898899899853032357782999962981
Q gi|254780545|r  257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                             ..+   .-+-|+.-++.-..... ++| +||.|
T Consensus       174 -------~~~---~a~~lf~li~~Rye~~S-~Ii-TSn~~  201 (254)
T PRK06526        174 -------EAE---AANLFFQLVSSRYERAS-LIV-TSNKP  201 (254)
T ss_pred             -------CHH---HHHHHHHHHHHHHCCCC-EEE-ECCCC
T ss_conf             -------889---99999999999974588-676-65898


No 182
>PRK06921 hypothetical protein; Provisional
Probab=98.30  E-value=6.6e-06  Score=61.73  Aligned_cols=102  Identities=18%  Similarity=0.279  Sum_probs=58.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCC----CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHH--HHHHC
Q ss_conf             3311003787425888999974246----99702058578864442033245999999998737801206323--56414
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEA----NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI--DAVGR  254 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~----~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDei--da~~~  254 (647)
                      -.+++|+|+||+|||.||-|||++.    +++.++++-.+++...-.. -....+.++.. +.+| +++||++  +..|.
T Consensus       116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~-~~~~~~~l~~~-~~~d-lLIIDDLfk~~~G~  192 (265)
T PRK06921        116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM-KKVE-VLFIDDLFKPVNGK  192 (265)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHHHHHHHHHH-HCCC-EEEEECCCCCCCCC
T ss_conf             662799728989889999999999999629719998879999999988-88899999986-3299-99982212234798


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             45578988626889889989985303235778299996298
Q gi|254780545|r  255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      .+.      ++   -..+++..-++. .-..+--+|-+||.
T Consensus       193 e~~------te---~~~~~lf~iIN~-Ry~~~kptIiSSNl  223 (265)
T PRK06921        193 PRA------TE---WQIEQTYSVVNY-RYLNHKPILISSEL  223 (265)
T ss_pred             CCC------CH---HHHHHHHHHHHH-HHHCCCCEEEECCC
T ss_conf             789------88---999999999999-99769998998689


No 183
>PRK08181 transposase; Validated
Probab=98.29  E-value=1.8e-06  Score=65.86  Aligned_cols=100  Identities=22%  Similarity=0.343  Sum_probs=61.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf             3311003787425888999974246---9970205857886444203-32459999999987378012063235641445
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR  256 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r  256 (647)
                      ...|+|.||||||||.||-|++.+|   |....+++.+++++.+... .......++.+  -..+-++.|||+-.+-.  
T Consensus       106 ~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~--l~~~dLLIiDe~G~~~~--  181 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTK--  181 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEHHCCCCCC--
T ss_conf             87089989999878899999999999879939997899999999997755839999999--74446012201056679--


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             5789886268898899899853032357782999962981
Q gi|254780545|r  257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                             ..+..+.+=|++..-   .... -++| +||.|
T Consensus       182 -------~~~~~~~lf~lI~~R---ye~~-S~II-TSn~~  209 (269)
T PRK08181        182 -------DQAETSVLFELISAR---YERR-SILI-TANQP  209 (269)
T ss_pred             -------CHHHHHHHHHHHHHH---HCCC-CEEE-ECCCC
T ss_conf             -------989999999999998---5788-8899-88999


No 184
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.27  E-value=3.7e-05  Score=56.31  Aligned_cols=116  Identities=19%  Similarity=0.277  Sum_probs=74.1

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC---C-----EECCCHHHHHHHHH-HCC----HHHHHHHHHHHHH----HC
Q ss_conf             123331100378742588899997424699---7-----02058578864442-033----2459999999987----37
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV---P-----FFTISGSDFVELFV-GVG----ASRVRDMFEQAKN----NS  240 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~---~-----f~~~~~s~~~~~~~-g~g----~~~vr~lf~~a~~----~~  240 (647)
                      .|+|...||+||+|+||+.+|+++|...-+   |     +-.-+.+||....- |.|    -..+|++-+....    ..
T Consensus        16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~   95 (290)
T PRK05917         16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQIWIHPYEAN   95 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             99660687689998659999999999985789961688987468998599615777887867899999999641864688


Q ss_pred             CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCC
Q ss_conf             8012063235641445578988626889889989985303235778299996298100883331-65642
Q gi|254780545|r  241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRF  309 (647)
Q Consensus       241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRf  309 (647)
                      -=|+.||+.|.+-              .+.-|.||--+.  +...++++|-.|+.++.|-|.++ |--||
T Consensus        96 ~KV~IId~Ad~Mn--------------~~AaNALLKtLE--EPP~~tvfILit~~~~~lLpTI~SRCQ~I  149 (290)
T PRK05917         96 YKIYIIHEADRMT--------------LDAISAFLKVLE--DPPKHSVIILTSAKPQRLPPTIRSRSLSI  149 (290)
T ss_pred             CEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf             2699975677638--------------999999999734--79878599998699254823776335116


No 185
>KOG0991 consensus
Probab=98.26  E-value=2.6e-05  Score=57.37  Aligned_cols=235  Identities=25%  Similarity=0.369  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE  219 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~  219 (647)
                      +.++||.|.++..+.|+-+..          -| .+| .+++.||||||||.-+.++|.+.=-     ..+...+|+=. 
T Consensus        24 ~~l~dIVGNe~tv~rl~via~----------~g-nmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR-   90 (333)
T KOG0991          24 SVLQDIVGNEDTVERLSVIAK----------EG-NMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER-   90 (333)
T ss_pred             HHHHHHHCCHHHHHHHHHHHH----------CC-CCC-CEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-
T ss_conf             299882177989999999997----------28-998-66752799986164899999998380666576320576554-


Q ss_pred             HHHHCCHHHHH---HHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             44203324599---99999987378----012063235641445578988626889889989985303235778299996
Q gi|254780545|r  220 LFVGVGASRVR---DMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       220 ~~~g~g~~~vr---~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
                           |-.-||   ..|.+-|-.-|    -||.+||.|+.-       .|..    |.|-   --|.=.++... +.+ |
T Consensus        91 -----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-------~gAQ----QAlR---RtMEiyS~ttR-Fal-a  149 (333)
T KOG0991          91 -----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-------AGAQ----QALR---RTMEIYSNTTR-FAL-A  149 (333)
T ss_pred             -----CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH-------HHHH----HHHH---HHHHHHCCCCH-HHH-H
T ss_conf             -----608999999999872034899852489961522020-------6899----9999---99999706320-000-0


Q ss_pred             CCCCC-CCCH-----HHCCCCCCCCEEEECHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             29810-0883-----33165642314100013478899999998-54887773211024544120379899999999987
Q gi|254780545|r  293 TNRPD-VLDA-----ALLRPGRFDRQITVPNPDIVGREHILMVH-SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA  365 (647)
Q Consensus       293 Tn~~~-~lD~-----al~RpgRfd~~i~~~~P~~~~r~~i~~~~-~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa  365 (647)
                      .|..+ ++.|     |+||   |+|.     -|..--...+.+. ..+.+..+| -++.+.-...|    |...-+|.  
T Consensus       150 CN~s~KIiEPIQSRCAiLR---yskl-----sd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn--  214 (333)
T KOG0991         150 CNQSEKIIEPIQSRCAILR---YSKL-----SDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN--  214 (333)
T ss_pred             HCCHHHHHHHHHHHHHHHH---HCCC-----CHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHCCC----HHHHHHHH--
T ss_conf             1542132226773457653---2226-----78999999999998707887711-47785544166----19999999--


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf             645532024210456899975013686556766686677899---9999999999985058773234322014
Q gi|254780545|r  366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT---AYHEAGHAVVACHVPKADPLHKATIIPR  435 (647)
Q Consensus       366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v---AyHEAGHAlva~~l~~~~~v~kVTIipR  435 (647)
                      +.+.-.+-..|+.+.+..-.|    -|   +..+-++-.+..   -+|||-.-+-..+-.+++|..-||-+-|
T Consensus       215 LQst~~g~g~Vn~enVfKv~d----~P---hP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FR  280 (333)
T KOG0991         215 LQSTVNGFGLVNQENVFKVCD----EP---HPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFR  280 (333)
T ss_pred             HHHHHCCCCCCCHHHHHHCCC----CC---CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             998740545246323100069----99---8599999999998612999999999999748988999999999


No 186
>smart00350 MCM minichromosome  maintenance proteins.
Probab=98.23  E-value=1.3e-05  Score=59.56  Aligned_cols=165  Identities=24%  Similarity=0.312  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCH
Q ss_conf             89852889999999998743356766420123--3311003787425888999974246997020585788644420332
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGA  226 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~  226 (647)
                      .|-|++.+|.-+.-  ..+-...+...-|.+.  --.+||.|-|||||+-|-|.++.=+--..| ++|..  +--+|.++
T Consensus       204 ~I~G~~~vK~allL--~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvy-tsG~g--sS~aGLTa  278 (509)
T smart00350      204 SIYGHEDIKKAILL--LLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVY-TTGKG--SSAVGLTA  278 (509)
T ss_pred             CCCCCHHHHHHHHH--HHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEE-EECCC--CCCCCCEE
T ss_conf             32387889999999--970887664898850415414998469982362999999985886068-73444--55577068


Q ss_pred             HHHHHHHH-----HHHH---HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CCCE
Q ss_conf             45999999-----9987---37801206323564144557898862688988998998530---------3235--7782
Q gi|254780545|r  227 SRVRDMFE-----QAKN---NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SEGV  287 (647)
Q Consensus       227 ~~vr~lf~-----~a~~---~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~~v  287 (647)
                      +-+|+-..     +|-+   .---|+.|||+|-+..          +    -.+.|+.-|.         |+..  +...
T Consensus       279 av~rd~~~ge~~leaGALVlAD~GiccIDEfdKm~~----------~----dr~alhEaMEQQtisiaKaGi~~tL~aR~  344 (509)
T smart00350      279 AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD----------S----DRTAIHEAMEQQTISIAKAGITTTLNARC  344 (509)
T ss_pred             EEEECCCCCCEEECCCCEECCCCCEEEEEEHHHCCH----------H----HHHHHHHHHHHCEEEEECCCEEEEEECCC
T ss_conf             999817888378725641205675478521320787----------7----89999999974877874375179985573


Q ss_pred             EEEEECCCC-------------CCCCHHHCCCCCCCCEEEE-CHHHHHHH----HHHHHHHHCCC
Q ss_conf             999962981-------------0088333165642314100-01347889----99999985488
Q gi|254780545|r  288 ILIAATNRP-------------DVLDAALLRPGRFDRQITV-PNPDIVGR----EHILMVHSRNV  334 (647)
Q Consensus       288 ~vi~aTn~~-------------~~lD~al~RpgRfd~~i~~-~~P~~~~r----~~i~~~~~~~~  334 (647)
                      -|+||+|-.             =.|.++||=  |||-.+.+ +.||.+.=    ..|++.|....
T Consensus       345 sVlAAaNP~~g~yd~~~s~~eni~l~~~LLS--RFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~  407 (509)
T smart00350      345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSH  407 (509)
T ss_pred             EEEEEECCCCCCCCCCCCHHHHCCCCHHHHH--HCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             5998655655637888999994689803541--02389996158987889999999999874158


No 187
>KOG2383 consensus
Probab=98.20  E-value=9.4e-06  Score=60.63  Aligned_cols=175  Identities=22%  Similarity=0.332  Sum_probs=95.5

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC----CHHHHHHHHHHCCHHHHHHHHHHH-----------------
Q ss_conf             12333110037874258889999742469970205----857886444203324599999999-----------------
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI----SGSDFVELFVGVGASRVRDMFEQA-----------------  236 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~----~~s~~~~~~~g~g~~~vr~lf~~a-----------------  236 (647)
                      -.+|||+.|||--|||||||---.=+.+--  +--    ---+|+- .|   -+|++++-.+-                 
T Consensus       111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~--i~rkqRvHFh~fM~-~V---H~r~H~~k~~~~~~~~~~a~~~~~Dpl~  184 (467)
T KOG2383         111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP--IWRKQRVHFHGFML-SV---HKRMHELKQEQGAEKPGYAKSWEIDPLP  184 (467)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHH-HH---HHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf             899846899635675446778877632784--01344403999999-99---9999999984165465533346678617


Q ss_pred             ---HH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEEECCCC-CCCCHHHCCCCCC
Q ss_conf             ---87--37801206323564144557898862688-98899899853032357782999962981-0088333165642
Q gi|254780545|r  237 ---KN--NSPCIVFVDEIDAVGRHRGIGLGGGNDER-EQTLNQLLVEMDGFESSEGVILIAATNRP-DVLDAALLRPGRF  309 (647)
Q Consensus       237 ---~~--~~p~iifiDeida~~~~r~~~~~~~~~e~-~~~ln~ll~~mdg~~~~~~v~vi~aTn~~-~~lD~al~RpgRf  309 (647)
                         .+  .--|++-+||+...            |-- --+|+.|.+.+  |  +.|||++|+.||+ +.|=     -+-+
T Consensus       185 ~vA~eIa~ea~lLCFDEfQVT------------DVADAmiL~rLf~~L--f--~~GvVlvATSNR~P~dLY-----knGl  243 (467)
T KOG2383         185 VVADEIAEEAILLCFDEFQVT------------DVADAMILKRLFEHL--F--KNGVVLVATSNRAPEDLY-----KNGL  243 (467)
T ss_pred             HHHHHHHHHCEEEEECHHHHH------------HHHHHHHHHHHHHHH--H--HCCEEEEEECCCCHHHHH-----HCCH
T ss_conf             899998550303431201013------------688999999999999--7--387599982789858886-----2430


Q ss_pred             CCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-C--CCH-HHHHHHHHHHHH-HHHHHHCCCCCHHHHHHH
Q ss_conf             31410001347889999999854887773211024544120-3--798-999999999876-455320242104568999
Q gi|254780545|r  310 DRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTP-G--FSG-ADLRNLVNEAAL-MAARRNRRLVTMQEFEDA  384 (647)
Q Consensus       310 d~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~-g--~sg-Adi~~~~~eAa~-~a~r~~~~~i~~~dl~~A  384 (647)
                      .|..++|.      .++|+.+++-..++..+|+...++... +  |.+ +|.+.++++--- +++.++ .      ...+
T Consensus       244 QR~~F~Pf------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~-d------~~~~  310 (467)
T KOG2383         244 QRENFIPF------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFKLLAADQN-D------GTRQ  310 (467)
T ss_pred             HHHHHHHH------HHHHHHHHEEEECCCCCCHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCC-C------CCCC
T ss_conf             25530068------999987636886588533533057777536724800278999999999743588-8------7777


Q ss_pred             HHHCCCCC
Q ss_conf             75013686
Q gi|254780545|r  385 KDKILMGA  392 (647)
Q Consensus       385 ~~rv~~G~  392 (647)
                      ..-+++|.
T Consensus       311 ~~l~v~GR  318 (467)
T KOG2383         311 RTLVVFGR  318 (467)
T ss_pred             CCEEEECC
T ss_conf             42267522


No 188
>KOG0990 consensus
Probab=98.20  E-value=4.1e-05  Score=55.98  Aligned_cols=161  Identities=22%  Similarity=0.263  Sum_probs=99.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r  139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      .+...--+.+||.+.+++...+.+.          ...+ +.| ..|+|||||||||-.-.|.|...-.|  .-..|-..
T Consensus        32 vekyrP~~l~dv~~~~ei~st~~~~----------~~~~-~lP-h~L~YgPPGtGktsti~a~a~~ly~~--~~~~~m~l   97 (360)
T KOG0990          32 VEKYRPPFLGIVIKQEPIWSTENRY----------SGMP-GLP-HLLFYGPPGTGKTSTILANARDFYSP--HPTTSMLL   97 (360)
T ss_pred             CCCCCCCHHHHHHCCCCHHHHHHHH----------CCCC-CCC-CCCCCCCCCCCCCCCHHHHHHHHCCC--CCCHHHHH
T ss_conf             6688982256673377212478886----------2688-897-53434899889987366656650589--98246999


Q ss_pred             HHHH----HCCHHHHH-HHHHHHHH-------HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             4442----03324599-99999987-------378012063235641445578988626889889989985303235778
Q gi|254780545|r  219 ELFV----GVGASRVR-DMFEQAKN-------NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG  286 (647)
Q Consensus       219 ~~~~----g~g~~~vr-~lf~~a~~-------~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~  286 (647)
                      |+-.    |.+.-|.+ .+|+.++.       .++-.|.+||.||..  |+            .-|+|=-...-+..+..
T Consensus        98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--~~------------AQnALRRviek~t~n~r  163 (360)
T KOG0990          98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--RD------------AQNALRRVIEKYTANTR  163 (360)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHH--HH------------HHHHHHHHHHHHCCCEE
T ss_conf             86436766886147888987764164000246761588733413766--98------------99999999987133237


Q ss_pred             EEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             2999962981008833316564231410001347889999999854
Q gi|254780545|r  287 VILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       287 v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                      ..+|+  |.|..+-||++-  ||-|.=+=+++ ...-..++.++..
T Consensus       164 F~ii~--n~~~ki~pa~qs--Rctrfrf~pl~-~~~~~~r~shi~e  204 (360)
T KOG0990         164 FATIS--NPPQKIHPAQQS--RCTRFRFAPLT-MAQQTERQSHIRE  204 (360)
T ss_pred             EEEEC--CCHHHCCCHHHC--CCCCCCCCCCC-HHHHHHHHHHHHH
T ss_conf             99861--676446814641--04457878887-5442467888871


No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.19  E-value=1.5e-05  Score=59.10  Aligned_cols=134  Identities=19%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---------------EECCCHHHHHHHHH---H--CCHHHHHHHHHHH
Q ss_conf             01233311003787425888999974246997---------------02058578864442---0--3324599999999
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVP---------------FFTISGSDFVELFV---G--VGASRVRDMFEQA  236 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~---------------f~~~~~s~~~~~~~---g--~g~~~vr~lf~~a  236 (647)
                      -.|.|.+.||.||+|+||+.||+++|...-+.               |-.-+.+||....-   |  .|-..||++-+.+
T Consensus        21 ~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~  100 (319)
T PRK06090         21 AERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA  100 (319)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             69963067667999857999999999998089999998877877999875899982366123356768799999999997


Q ss_pred             HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf             873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r  237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ  312 (647)
Q Consensus       237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~  312 (647)
                      ...    ..-|++||+.|.+-              +..-|.||--+.  +...++++|-.|++|+.|-|.++-  |- .+
T Consensus       101 ~~~~~~g~~KV~iI~~ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~ll~TI~S--RC-q~  161 (319)
T PRK06090        101 QESSQLGGYRLFVIEPADAMN--------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQ  161 (319)
T ss_pred             HHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCCHHH--CC-CC
T ss_conf             545210693699981444349--------------999999999842--899883899876851208641876--14-45


Q ss_pred             EEECHHHHHHHHHHHHH
Q ss_conf             10001347889999999
Q gi|254780545|r  313 ITVPNPDIVGREHILMV  329 (647)
Q Consensus       313 i~~~~P~~~~r~~i~~~  329 (647)
                      +.++.|+.+.-.+=|+-
T Consensus       162 ~~l~~p~~~~~~~WL~~  178 (319)
T PRK06090        162 WVVTPPSTDQAMQWLKG  178 (319)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             02899599999999988


No 190
>PRK12377 putative replication protein; Provisional
Probab=98.18  E-value=1.6e-06  Score=66.13  Aligned_cols=132  Identities=18%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf             2256988985-28899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r  143 GSVTFKDVAG-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV  218 (647)
Q Consensus       143 ~~v~f~dv~g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~  218 (647)
                      -+-+|++.-- .|..+..+.....|..   .|    ..-..+++|+||||||||.||-|++.++   |...++++.++++
T Consensus        69 ~~~~f~ny~~~~~~~~~a~~~a~~~~~---~F----~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv  141 (248)
T PRK12377         69 RKCSFANYQVQNDGQRYALSQAKSIAD---EL----MTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM  141 (248)
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHH---HH----HCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf             438634564578789999999999999---87----31886089989999878899999999999879969998899999


Q ss_pred             HHHHHCCHH-HH-HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             444203324-59-9999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  219 ELFVGVGAS-RV-RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       219 ~~~~g~g~~-~v-r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      ......-.. +. ..+.+.  -..+-.+.|||+-..   +.+      +.....++|++..-  ......+++  +||.+
T Consensus       142 ~~L~~a~~~g~~~~k~l~~--l~~~dLLIIDElG~~---~~s------~~~~~llfqlI~~R--y~~~ks~Ii--TTNL~  206 (248)
T PRK12377        142 SRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ---RET------KNEQVVLNQIIDRR--TASMRSVGM--LTNLN  206 (248)
T ss_pred             HHHHHHHHCCCCHHHHHHH--HHCCCEEEEHHCCCC---CCC------HHHHHHHHHHHHHH--HHCCCCEEE--ECCCC
T ss_conf             9999999848509999999--733898986000578---898------67999999999999--855798689--75899


No 191
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.18  E-value=6.5e-05  Score=54.57  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH---------
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857---------
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS---------  215 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s---------  215 (647)
                      .+-+|+|=   -|..+.||-.||++  .+  .|-+..+=.||.||||||||-..+.+|.|.|.-+..-..+         
T Consensus        16 ~~l~ELAV---HKKKV~eV~~WL~~--~~--~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~   88 (490)
T pfam03215        16 RRRDELAI---HKKKIAEVDHWLKA--VF--LESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNE   88 (490)
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHH--HH--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCH
T ss_conf             87899855---35439999999999--85--4777731899879899889999999999759689981486545677502


Q ss_pred             ----HHHHHHHHCCHHHHHHHHH----HHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             ----8864442033245999999----99873--------7801206323564144557898862688988998998530
Q gi|254780545|r  216 ----DFVELFVGVGASRVRDMFE----QAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       216 ----~~~~~~~g~g~~~vr~lf~----~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
                          +|.+.+.--+.+.. +-|+    .|.+.        ..-||+|||+...+. |+.         .+.-+.|+..+.
T Consensus        89 ~q~~d~~g~~~~~~~S~~-~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d~---------~~fr~~L~~~L~  157 (490)
T pfam03215        89 CQKPDFRGDCIVNSLSQM-EQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SDA---------EKFREVIREVLQ  157 (490)
T ss_pred             HHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CCH---------HHHHHHHHHHHH
T ss_conf             210121234576666377-776788762233565445788735999965887442-366---------999999999997


Q ss_pred             CCCCCCCEEEEEE-C------CCCC--------CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCC--CC
Q ss_conf             3235778299996-2------9810--------088333165642314100013478899999998548--87773--21
Q gi|254780545|r  280 GFESSEGVILIAA-T------NRPD--------VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAP--NV  340 (647)
Q Consensus       280 g~~~~~~v~vi~a-T------n~~~--------~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~--~~  340 (647)
                      . .....+|+|-+ |      |..+        .+.|-|+.--+. .+|.+......--.+-|..-+++  .+..+  +.
T Consensus       158 s-~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i-~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~  235 (490)
T pfam03215       158 S-IWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI-DTITFNPIAPTFMKKALVRISVQEGKLKSPKSDS  235 (490)
T ss_pred             H-CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             0-8999879999704666677643323210786359888708896-3698688878899999999999857655675203


Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             10245441203798999999999876455320
Q gi|254780545|r  341 ILKTIARGTPGFSGADLRNLVNEAALMAARRN  372 (647)
Q Consensus       341 d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~  372 (647)
                      .++.||+.    |+-||.+.+|---..+.+.+
T Consensus       236 ~le~Ia~~----S~GDIRsAInsLQF~~~~~~  263 (490)
T pfam03215       236 KLEVICQE----AGGDLRSAINSLQFSSSGPN  263 (490)
T ss_pred             HHHHHHHH----CCCCHHHHHHHHHHHCCCCC
T ss_conf             89999986----48729999999998626898


No 192
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.17  E-value=8.4e-05  Score=53.73  Aligned_cols=176  Identities=19%  Similarity=0.207  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-----EECCCHHHHH---HHHH------
Q ss_conf             9999999987433567664201233311003787425888999974246997-----0205857886---4442------
Q gi|254780545|r  157 KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-----FFTISGSDFV---ELFV------  222 (647)
Q Consensus       157 k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-----f~~~~~s~~~---~~~~------  222 (647)
                      .+||.++...+++       |  ...-+++|||-++|||-|.+.++.+...+     |+........   ..+.      
T Consensus         5 e~EL~~L~~~~~~-------~--~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~   75 (223)
T pfam01637         5 EKELKELEEWAER-------G--TYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLA   75 (223)
T ss_pred             HHHHHHHHHHHHC-------C--CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999966-------9--971899986887879999999998633468528999514443799999888889999


Q ss_pred             -------H-CC-------HHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             -------0-33-------2459999999987-378012063235641445578988626889889989985303235778
Q gi|254780545|r  223 -------G-VG-------ASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG  286 (647)
Q Consensus       223 -------g-~g-------~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~  286 (647)
                             + .+       ...+.++|+...+ ..+|||.|||+.-+....+.         ...++.|..-+|-......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~---------~~~~~~l~~~~d~~~~~~~  146 (223)
T pfam01637        76 EALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGA---------ESYVKLLLNLIDYPPKEYH  146 (223)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCC---------HHHHHHHHHHHHHHHCCCC
T ss_conf             9987651233222112078899999999985599659997016776402443---------0599999999997524577


Q ss_pred             EEEEEECCCCCCCCHHHCCC-----CCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCC
Q ss_conf             29999629810088333165-----642314100013478899999998548--87773211024544120379
Q gi|254780545|r  287 VILIAATNRPDVLDAALLRP-----GRFDRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFS  353 (647)
Q Consensus       287 v~vi~aTn~~~~lD~al~Rp-----gRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~s  353 (647)
                      +.+|-+.....++.. ++..     ||++ .|.+.+=+...-.+.++.+.+.  .+.+++ ++..+-..|-|.-
T Consensus       147 ~~~I~~GS~~~~m~~-~~~~~~plygR~~-~i~l~p~~~~~~~efl~~~f~e~~~~~~~~-~~~~iy~~~gG~P  217 (223)
T pfam01637       147 LIVVLCGSSEGLTIE-LLDYKSPLYGRHR-WALLKPFDFETAWNFLREGFEELYEPGPKE-EFEEVWRLLGGNP  217 (223)
T ss_pred             EEEEEECCHHHHHHH-HHCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCHH
T ss_conf             589997271999999-8620565357502-277268998999999999999847899989-9999999969838


No 193
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.15  E-value=3.5e-06  Score=63.73  Aligned_cols=120  Identities=34%  Similarity=0.480  Sum_probs=71.0

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHHH-----HHHHHC------CHHH-HHHHHHHHHHHCCH
Q ss_conf             123331100378742588899997424---69970205857886-----444203------3245-99999999873780
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFV-----ELFVGV------GASR-VRDMFEQAKNNSPC  242 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~~-----~~~~g~------g~~~-vr~lf~~a~~~~p~  242 (647)
                      +..+.-||+.|++||||+++|++|-..   ++-||+.++++.+-     +...|.      |+.. -.-+|++|   .-.
T Consensus        19 a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~le~A---~gG   95 (168)
T pfam00158        19 APTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLFELA---DGG   95 (168)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC---CCC
T ss_conf             58899889989998888999999998524356883125678998779999875876676689875789964226---998


Q ss_pred             HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---C----CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             1206323564144557898862688988998998530323---5----77829999629810088333165642314100
Q gi|254780545|r  243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE---S----SEGVILIAATNRPDVLDAALLRPGRFDRQITV  315 (647)
Q Consensus       243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~---~----~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~  315 (647)
                      .+||||||.+-.           +-...|-++|.+- -|.   .    .-+|=+|++|+..  | ..+...|+|-+-.|.
T Consensus        96 TL~LdeI~~L~~-----------~~Q~~Ll~~L~~~-~~~~~g~~~~~~~~vRiIast~~~--L-~~~v~~G~Fr~DLyy  160 (168)
T pfam00158        96 TLFLDEIGELPL-----------ELQAKLLRVLQEG-EFERVGGTKPIKVDVRIIAATNRD--L-EEAVAEGRFREDLYY  160 (168)
T ss_pred             EEECCCHHHCCH-----------HHHHHHHHHHHCC-EEEECCCCCEEEEEEEEEEECCCC--H-HHHHHCCCCHHHHHH
T ss_conf             788024413999-----------9999999998579-699779984588854999965988--9-999883996399888


No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.15  E-value=8.9e-06  Score=60.78  Aligned_cols=132  Identities=26%  Similarity=0.388  Sum_probs=86.4

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC--------C---------EECCCHHHHHHHHH-------H-----CCHHH
Q ss_conf             123331100378742588899997424699--------7---------02058578864442-------0-----33245
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV--------P---------FFTISGSDFVELFV-------G-----VGASR  228 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~--------~---------f~~~~~s~~~~~~~-------g-----~g~~~  228 (647)
                      -++|...||+||.|+||+.+|+++|...-+        |         |-.-+.+||....-       |     .+-..
T Consensus        18 ~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idq   97 (325)
T PRK08699         18 ERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDA   97 (325)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf             45011797579999789999999999982899988899898888899986599999688513445300166556676999


Q ss_pred             HHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC
Q ss_conf             99999999873----78012063235641445578988626889889989985303235778299996298100883331
Q gi|254780545|r  229 VRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL  304 (647)
Q Consensus       229 vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~  304 (647)
                      ||++-+.+...    .-=|+.||+.|.+              ..+.-|.||.-+.  +...++++|=.|+.|+.|=|-++
T Consensus        98 iR~l~~~~~~~~~~~~~kV~ii~~ae~m--------------n~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~  161 (325)
T PRK08699         98 VREIIDNVYLTSVRGGLRVILIHPAESM--------------NVQAANSLLKVLE--EPPPQVVFLLVSHAADKVLPTIK  161 (325)
T ss_pred             HHHHHHHHCCCCCCCCCEEEEECCHHHH--------------CHHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHH
T ss_conf             9999999710865689469998577775--------------8999999999841--78888489998798464623398


Q ss_pred             CCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             656423141000134788999999
Q gi|254780545|r  305 RPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       305 RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
                      -  |- +++.++.|+.+.-.+-|+
T Consensus       162 S--Rc-~~~~~~~p~~~~~~~~L~  182 (325)
T PRK08699        162 S--RC-RKMVLPAPSHEEALAYLR  182 (325)
T ss_pred             H--CC-CCCCCCCCCHHHHHHHHH
T ss_conf             6--45-421089959999999999


No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.13  E-value=1.9e-05  Score=58.46  Aligned_cols=136  Identities=25%  Similarity=0.339  Sum_probs=82.6

Q ss_pred             HHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--------CE---------ECCCHHHHHHHHH-----H--------
Q ss_conf             6420123331100378742588899997424699--------70---------2058578864442-----0--------
Q gi|254780545|r  174 KRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--------PF---------FTISGSDFVELFV-----G--------  223 (647)
Q Consensus       174 ~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--------~f---------~~~~~s~~~~~~~-----g--------  223 (647)
                      .....++|...||+||.|+||..+|.++|.-.-+        |.         -.-+.+||...+=     +        
T Consensus        14 ~~~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~   93 (342)
T PRK06964         14 QALRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDA   93 (342)
T ss_pred             HHCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHH
T ss_conf             98068713057657999867999999999998389999888978677778888627999745534002102233321001


Q ss_pred             ------------------CCHHHHHHHHHHHHHHC----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             ------------------33245999999998737----80120632356414455789886268898899899853032
Q gi|254780545|r  224 ------------------VGASRVRDMFEQAKNNS----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF  281 (647)
Q Consensus       224 ------------------~g~~~vr~lf~~a~~~~----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~  281 (647)
                                        ..-..||+|-+.....+    --|+.||..|.+              ..+.-|.||--+.  
T Consensus        94 ~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~m--------------n~~aaNalLK~LE--  157 (342)
T PRK06964         94 KAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--  157 (342)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH--------------CHHHHHHHHHHHC--
T ss_conf             011122210123565564549999999999700754588449998277873--------------8999999999723--


Q ss_pred             CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             35778299996298100883331656423141000134788999999
Q gi|254780545|r  282 ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       282 ~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
                      +...++++|=.|++|+.|=|-++=  |- .++.+++|+.+.-...|+
T Consensus       158 EPp~~~~~iL~~~~~~~llpTI~S--Rc-q~~~~~~~~~~~~~~~L~  201 (342)
T PRK06964        158 EPPPGVVFLLVSARIDRLLPTILS--RC-RQWPMTVPAPEAAAAWLA  201 (342)
T ss_pred             CCCCCEEEEEEECCHHHCCHHHHH--CC-EEECCCCCCHHHHHHHHH
T ss_conf             798784899986992548368876--76-430289959999999998


No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.11  E-value=2.4e-05  Score=57.66  Aligned_cols=134  Identities=22%  Similarity=0.268  Sum_probs=92.5

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHH---H--CCHHHHHHHHHHH
Q ss_conf             123331100378742588899997424699-------7---------02058578864442---0--3324599999999
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFV---G--VGASRVRDMFEQA  236 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~---g--~g~~~vr~lf~~a  236 (647)
                      .|.|.+.||.||+|+||..+|+++|.-.-+       |         +-+-+.+|+....-   |  .+-..||++=+.+
T Consensus        21 ~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~  100 (334)
T PRK07993         21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL  100 (334)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             98104675479999889999999999981899999999999978999866899984775342234559999999999998


Q ss_pred             HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf             873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r  237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ  312 (647)
Q Consensus       237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~  312 (647)
                      ...    .-=|++||+.|.+-              .+.-|.||--+.  +...++++|=.|+.|+.|-|-++=  |- ++
T Consensus       101 ~~~~~~g~~kV~iI~~Ae~mn--------------~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--RC-q~  161 (334)
T PRK07993        101 YEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPEKTWFFLACREPARLLATLRS--RC-RL  161 (334)
T ss_pred             HHCCCCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEECCCHHHCCCHHHH--HC-CC
T ss_conf             436656994799976677759--------------999999998612--799884999866985657238875--23-04


Q ss_pred             EEECHHHHHHHHHHHHHH
Q ss_conf             100013478899999998
Q gi|254780545|r  313 ITVPNPDIVGREHILMVH  330 (647)
Q Consensus       313 i~~~~P~~~~r~~i~~~~  330 (647)
                      +.+..|+.+.-.+-|.-.
T Consensus       162 ~~~~~~~~~~~~~wL~~~  179 (334)
T PRK07993        162 HYLAPPPEQYALTWLSRE  179 (334)
T ss_pred             CCCCCCCHHHHHHHHHHH
T ss_conf             158997999999999873


No 197
>KOG2227 consensus
Probab=98.08  E-value=0.00023  Score=50.64  Aligned_cols=180  Identities=22%  Similarity=0.222  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CC--EECCC--------------HHHHH
Q ss_conf             9999999874335676642012333110037874258889999742469---97--02058--------------57886
Q gi|254780545|r  158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VP--FFTIS--------------GSDFV  218 (647)
Q Consensus       158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~--f~~~~--------------~s~~~  218 (647)
                      .|+..+-.|++.+     +-.+.+.-+-+.|-||||||.+-.-+--...   ..  -.++.              .++++
T Consensus       157 ~e~~~v~~F~~~h-----le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~  231 (529)
T KOG2227         157 LEMDIVREFFSLH-----LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLL  231 (529)
T ss_pred             HHHHHHHHHHHHH-----HHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             8899999999854-----31266764575179986548899999874034316651699851235425889999988898


Q ss_pred             HHHHHCCHH-HHHHHHHHH-HHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             444203324-599999999-8737-8012063235641445578988626889889989985303235778299996298
Q gi|254780545|r  219 ELFVGVGAS-RVRDMFEQA-KNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       219 ~~~~g~g~~-~vr~lf~~a-~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      .--+|-|.- .....|++- .+.+ |-++..||+|-++.++ ..          +|-. |-|++- -.+...+.||-.|-
T Consensus       232 q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-~~----------vLy~-lFewp~-lp~sr~iLiGiANs  298 (529)
T KOG2227         232 QDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-QT----------VLYT-LFEWPK-LPNSRIILIGIANS  298 (529)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCC-CC----------EEEE-EHHCCC-CCCCEEEEEEEHHH
T ss_conf             87428950478999999987525633898721256776046-53----------1432-100136-77660566640013


Q ss_pred             CCCCCHHHCCC----CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHCCCHH
Q ss_conf             10088333165----6423141000134788999999985488777321--102454412037989
Q gi|254780545|r  296 PDVLDAALLRP----GRFDRQITVPNPDIVGREHILMVHSRNVPLAPNV--ILKTIARGTPGFSGA  355 (647)
Q Consensus       296 ~~~lD~al~Rp----gRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~--d~~~la~~t~g~sgA  355 (647)
                      .|.-|-.|.|=    +---+.+.|++=+.+.-.+||+--+...+.....  -++-.|+...|.||-
T Consensus       299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD  364 (529)
T KOG2227         299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD  364 (529)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf             557777766654025788746655687889999999999740544333038999999986257612


No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.03  E-value=8.4e-07  Score=68.20  Aligned_cols=128  Identities=30%  Similarity=0.442  Sum_probs=77.1

Q ss_pred             HHCCCCCCEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHH---HHHHHCCHHHHHH--HHHHHHH-HCC--HHEEH
Q ss_conf             201233311003787425888999974246-9970205857886---4442033245999--9999987-378--01206
Q gi|254780545|r  176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFV---ELFVGVGASRVRD--MFEQAKN-NSP--CIVFV  246 (647)
Q Consensus       176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~---~~~~g~g~~~vr~--lf~~a~~-~~p--~iifi  246 (647)
                      +++-.-..++|+|||||+|+++|+.++... +..||.---+-|-   |+|.-+.-+.+|+  -|.+.-+ .-|  .|+|+
T Consensus        34 LaalagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP~A~iaFL  113 (498)
T PRK13531         34 LAALSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFL  113 (498)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCCCCEEEHH
T ss_conf             99972894698889951388999999998557408999987469888853833299871178489722675886613157


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC-C-----EEEEEECCC-CC---CCCHHHCCCCCCCCEEE
Q ss_conf             3235641445578988626889889989985303--23577-8-----299996298-10---08833316564231410
Q gi|254780545|r  247 DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE-G-----VILIAATNR-PD---VLDAALLRPGRFDRQIT  314 (647)
Q Consensus       247 Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~-~-----v~vi~aTn~-~~---~lD~al~RpgRfd~~i~  314 (647)
                      |||=-    -       |   ..+||.||+-+.-  |.+.. .     ..+|||+|- |+   .| .||.-  ||=-++.
T Consensus       114 DEIfK----a-------n---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~~~L-~AlyD--RfL~R~~  176 (498)
T PRK13531        114 DEIWK----A-------G---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEADSSL-EALYD--RMLIRLW  176 (498)
T ss_pred             HHHHH----C-------C---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCCCCH-HHHHH--HHHHHEE
T ss_conf             87861----4-------8---89999999986464034798313044688643046799998407-88887--6441022


Q ss_pred             ECHHHH
Q ss_conf             001347
Q gi|254780545|r  315 VPNPDI  320 (647)
Q Consensus       315 ~~~P~~  320 (647)
                      |+.-..
T Consensus       177 v~~v~~  182 (498)
T PRK13531        177 LDKVQD  182 (498)
T ss_pred             CCCCCC
T ss_conf             313167


No 199
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.01  E-value=1.7e-05  Score=58.79  Aligned_cols=197  Identities=29%  Similarity=0.428  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH
Q ss_conf             2422569889852889999999998743356766420123331100378742588899997424---6997020585788
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF  217 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~  217 (647)
                      ..+...+..+.|.-.+-..+.+.|+..          ++-.--||+.|..||||-++||||-..   .+-||+++.++.+
T Consensus       216 ~~~~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl  285 (550)
T COG3604         216 SEVVLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL  285 (550)
T ss_pred             CCHHCCCCCCCCCCHHHHHHHHHHHHH----------HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf             431024456230699999999999987----------2689807984588853899999998737555798666312225


Q ss_pred             HH------HHHHC-----CHHHH-HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHH--HHCCCC
Q ss_conf             64------44203-----32459-99999998737801206323564144557898862688988-998998--530323
Q gi|254780545|r  218 VE------LFVGV-----GASRV-RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLV--EMDGFE  282 (647)
Q Consensus       218 ~~------~~~g~-----g~~~v-r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~--~mdg~~  282 (647)
                      -|      .|.-+     ||-+- +--|+.|-   .--+|+|||--+-..            -|. |---|.  |+....
T Consensus       286 PesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~------------lQaKLLRvLQegEieRvG  350 (550)
T COG3604         286 PESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA------------LQAKLLRVLQEGEIERVG  350 (550)
T ss_pred             CHHHHHHHHHCCCCCCCCCCHHCCCCCEEECC---CCEEECHHHCCCCHH------------HHHHHHHHHHHCCEEECC
T ss_conf             37888888745332233351014676356557---975760220367877------------889999998636525347


Q ss_pred             CCC----CEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH--HH-HHHCCC---------CCCC
Q ss_conf             577----82999962981008833316564231-------4100013478899-99--99-985488---------7773
Q gi|254780545|r  283 SSE----GVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI--LM-VHSRNV---------PLAP  338 (647)
Q Consensus       283 ~~~----~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i--~~-~~~~~~---------~~~~  338 (647)
                      ++.    .|=|||||||-  |- -..|-|+|--       .+-+.+|-..+|. +|  |- +++++.         .+++
T Consensus       351 ~~r~ikVDVRiIAATNRD--L~-~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~  427 (550)
T COG3604         351 GDRTIKVDVRVIAATNRD--LE-EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA  427 (550)
T ss_pred             CCCEEEEEEEEEECCCHH--HH-HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             996367778998213530--99-998749515545321020013789834588667999999999998863976403398


Q ss_pred             CCCHHHHHHHHHCCCH--HHHHHHHHHHHHHH
Q ss_conf             2110245441203798--99999999987645
Q gi|254780545|r  339 NVILKTIARGTPGFSG--ADLRNLVNEAALMA  368 (647)
Q Consensus       339 ~~d~~~la~~t~g~sg--Adi~~~~~eAa~~a  368 (647)
                      + -++.|-.+  +|-|  -+|+|++..|+++|
T Consensus       428 ~-Al~~L~~y--~wPGNVRELen~veRavlla  456 (550)
T COG3604         428 E-ALELLSSY--EWPGNVRELENVVERAVLLA  456 (550)
T ss_pred             H-HHHHHHCC--CCCCCHHHHHHHHHHHHHHC
T ss_conf             9-99999739--99971999998999999970


No 200
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.97  E-value=4.5e-05  Score=55.73  Aligned_cols=150  Identities=29%  Similarity=0.430  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH----H
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246---99702058578----8
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD----F  217 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~----~  217 (647)
                      ..+.++.|...+-+++.+.+.      +.    +...--||+.|++||||-+.|+|+-...   +-||+.+++..    .
T Consensus       138 ~~~~~liG~S~am~~l~~~i~------kv----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l  207 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIA------KV----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL  207 (464)
T ss_pred             CCCCCCCCCCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf             556775206999999999999------98----47799789977898758999999986074458992563346489888


Q ss_pred             HH-HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCC
Q ss_conf             64-4420------33245-99999999873780120632356414455789886268898899899853-----032357
Q gi|254780545|r  218 VE-LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFESS  284 (647)
Q Consensus       218 ~~-~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~~  284 (647)
                      +| -..|      .||.+ -.-.|+.|   .--.+|+|||-.+-.          +  -|+  -||--+     .-..++
T Consensus       208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl----------~--~Q~--kLLRvLqe~~~~rvG~~  270 (464)
T COG2204         208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL----------E--LQV--KLLRVLQEREFERVGGN  270 (464)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEC---CCCEEEEECCCCCCH----------H--HHH--HHHHHHHCCEEEECCCC
T ss_conf             777761456567677643457615773---796587323110999----------9--999--99999870706735888


Q ss_pred             ----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH
Q ss_conf             ----782999962981008833316564231-------4100013478899
Q gi|254780545|r  285 ----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE  324 (647)
Q Consensus       285 ----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~  324 (647)
                          -.|=||||||+.=   ..+..-|||-.       .+.+.+|-..+|.
T Consensus       271 ~~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~  318 (464)
T COG2204         271 KPIKVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERK  318 (464)
T ss_pred             CEECEEEEEEEECCCCH---HHHHHCCCCHHHHHHHHCCCEECCCCCCCCC
T ss_conf             60000169996057789---9998819737888865233110487622362


No 201
>PHA02244 ATPase-like protein
Probab=97.93  E-value=4.4e-05  Score=55.79  Aligned_cols=124  Identities=26%  Similarity=0.360  Sum_probs=78.7

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH--HHHHHHHHH---CCHHHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             1233311003787425888999974246997020585--788644420---33245999999998737801206323564
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG--SDFVELFVG---VGASRVRDMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~--s~~~~~~~g---~g~~~vr~lf~~a~~~~p~iifiDeida~  252 (647)
                      +.+|  |.|.||.|+|||..|+-||.-.+.||+...+  ++|-  +.|   ..-.-+-.-|.+|-++. -++|+|||||-
T Consensus       118 ~nip--V~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~--L~Gf~DAnG~yh~T~f~kaFk~G-GLfLlDEiDAS  192 (383)
T PHA02244        118 ANIP--VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFE--LKGFIDANGKFHETPFYEAFKKG-GLFFIDEIDAS  192 (383)
T ss_pred             CCCC--EEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHH--CCCEECCCCCEECCHHHHHHHCC-CEEEEEHHCCC
T ss_conf             5985--6997588886348999999985888244132301343--01256489967263899998618-87997320044


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHH-----HHCCC-CCCCCEEEEEECCC-----------CCCCCHHHCCCCCCCCEEEE
Q ss_conf             144557898862688988998998-----53032-35778299996298-----------10088333165642314100
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLV-----EMDGF-ESSEGVILIAATNR-----------PDVLDAALLRPGRFDRQITV  315 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~-----~mdg~-~~~~~v~vi~aTn~-----------~~~lD~al~RpgRfd~~i~~  315 (647)
                                 |-+---++|+-|.     --||. ...+..++|||-|-           -..||.|     -+||-+.+
T Consensus       193 -----------nP~aL~~lNaALAN~fm~FPdG~V~~HedFr~IAagNT~G~Gad~~YVGRnqLD~A-----TLDRFv~i  256 (383)
T PHA02244        193 -----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA-----TLDRFAPI  256 (383)
T ss_pred             -----------CHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH-----HHHHEEEC
T ss_conf             -----------87999999899864763476421100576389972465677887221144545646-----46203644


Q ss_pred             CHHHHHH
Q ss_conf             0134788
Q gi|254780545|r  316 PNPDIVG  322 (647)
Q Consensus       316 ~~P~~~~  322 (647)
                      +.+--+-
T Consensus       257 e~~YDEk  263 (383)
T PHA02244        257 EFDYDEK  263 (383)
T ss_pred             CCCCCHH
T ss_conf             5683167


No 202
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.90  E-value=0.00045  Score=48.43  Aligned_cols=187  Identities=25%  Similarity=0.324  Sum_probs=110.1

Q ss_pred             CCC-EEECCCCCHHHHHHHHHHHCCCC---CCEE-----CCCHHHHHHHHHHCCHH----HH--------HHHHHHHHH-
Q ss_conf             331-10037874258889999742469---9702-----05857886444203324----59--------999999987-
Q gi|254780545|r  181 PHG-VLLVGPPGTGKTLLARAVAGEAN---VPFF-----TISGSDFVELFVGVGAS----RV--------RDMFEQAKN-  238 (647)
Q Consensus       181 p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~-----~~~~s~~~~~~~g~g~~----~v--------r~lf~~a~~-  238 (647)
                      -+| +.+.|+-|+|||++.||+.-...   +..+     .+|.+.+.+.|+-+.++    ++        |.|.+..++ 
T Consensus        50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g  129 (269)
T COG3267          50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG  129 (269)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             78559997447776369999999855788517998357630178899999998405832006889999999999999817


Q ss_pred             HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHC-CCCCCCCEEEEEECC-CCCCCCHHHCC-CCCCCCEE
Q ss_conf             37801206323564144557898862688988998--998530-323577829999629-81008833316-56423141
Q gi|254780545|r  239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ--LLVEMD-GFESSEGVILIAATN-RPDVLDAALLR-PGRFDRQI  313 (647)
Q Consensus       239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~--ll~~md-g~~~~~~v~vi~aTn-~~~~lD~al~R-pgRfd~~i  313 (647)
                      .-|-++++||...+..              .++-+  ||++.+ ++....+|+.+|-+- +|+.-=|++.- --|++-+|
T Consensus       130 ~r~v~l~vdEah~L~~--------------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~  195 (269)
T COG3267         130 KRPVVLMVDEAHDLND--------------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRI  195 (269)
T ss_pred             CCCEEEEEHHHHHHCH--------------HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHEEEEEE
T ss_conf             8873785016766175--------------48999999886203466721145507801143544288985431677899


Q ss_pred             EECHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             000134788999999985488----777321102454412037989999999998764553202421045689
Q gi|254780545|r  314 TVPNPDIVGREHILMVHSRNV----PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFE  382 (647)
Q Consensus       314 ~~~~P~~~~r~~i~~~~~~~~----~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~  382 (647)
                      .+++-+...-..-++.++++-    ++-.+--+..++..+.| .+--|.++|.-|...|...|.+.|+...+.
T Consensus       196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~  267 (269)
T COG3267         196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK  267 (269)
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf             538867478999999998505899666770578999998525-548999988999999987399751256513


No 203
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.88  E-value=0.00031  Score=49.61  Aligned_cols=182  Identities=18%  Similarity=0.214  Sum_probs=110.0

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCC--CCCEECCCHHHHHHHHHHCCHHHHH------H-------HHH---HHHHHCCHH
Q ss_conf             311003787425888999974246--9970205857886444203324599------9-------999---998737801
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEA--NVPFFTISGSDFVELFVGVGASRVR------D-------MFE---QAKNNSPCI  243 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~--~~~f~~~~~s~~~~~~~g~g~~~vr------~-------lf~---~a~~~~p~i  243 (647)
                      .|||+.|++||+|+.++++++.-.  +.||..+        ..|.++.|+-      .       .|+   .| +.-+.|
T Consensus        26 GGvlirg~~Gtakst~~r~l~~llp~~~p~~~l--------Pl~~tedrl~G~lDi~~tL~~G~~v~~~GLLa-~A~~gv   96 (584)
T PRK13406         26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRL--------PPGIADDRLLGGLDLAATLRAGRPVAERGLLA-EADGGV   96 (584)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEC--------CCCCCHHHHCCCCCHHHHHHCCCEECCCCHHH-CCCCCE
T ss_conf             518997799957999999999756899984656--------99997415147125999997689852575333-036998


Q ss_pred             EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CCCEEEEEECCC---CCCCCHHHCCCCCC
Q ss_conf             206323564144557898862688988998998530---------3235--778299996298---10088333165642
Q gi|254780545|r  244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SEGVILIAATNR---PDVLDAALLRPGRF  309 (647)
Q Consensus       244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~~v~vi~aTn~---~~~lD~al~RpgRf  309 (647)
                      +++||+.-+.              ...++.||.-+|         |.+.  ....++|+..|-   .+.+.++|++  ||
T Consensus        97 Lyvdevnll~--------------d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~de~~~~~l~d--Rl  160 (584)
T PRK13406         97 LVLAMAERLE--------------PGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEEDERAPAALAD--RL  160 (584)
T ss_pred             EEEECHHHCC--------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH--HH
T ss_conf             9985147378--------------8899999999854874002587663566505899946788764311078887--65


Q ss_pred             CCEEEECH-------HHHHHHHHHHHH--HHCCCCCCCCCCHHHHHHHHHCC--CH--HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             31410001-------347889999999--85488777321102454412037--98--9999999998764553202421
Q gi|254780545|r  310 DRQITVPN-------PDIVGREHILMV--HSRNVPLAPNVILKTIARGTPGF--SG--ADLRNLVNEAALMAARRNRRLV  376 (647)
Q Consensus       310 d~~i~~~~-------P~~~~r~~i~~~--~~~~~~~~~~~d~~~la~~t~g~--sg--Adi~~~~~eAa~~a~r~~~~~i  376 (647)
                      -.++.+.-       +....+..|..-  .+..+.++++ -+..++..+.-+  .|  |||.. ++-|.-+|+-++++.|
T Consensus       161 a~~vd~~~~~~~~~~~~~~~~~~i~~Ar~~L~~V~i~d~-~~~~l~~~a~~~gv~g~Ra~i~~-~raArA~AAl~Gr~~V  238 (584)
T PRK13406        161 AFHLDLDGLALRDTREFPIDADDIAAARARLAAVRVPPE-AIEALCAAAAALGIASLRAPLLA-LRAARAAAALAGRTAV  238 (584)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHCCCCCC
T ss_conf             070681676666401111236899999986786666999-99999999998399862099999-9999999997499978


Q ss_pred             CHHHHHHHHHHCCC
Q ss_conf             04568999750136
Q gi|254780545|r  377 TMQEFEDAKDKILM  390 (647)
Q Consensus       377 ~~~dl~~A~~rv~~  390 (647)
                      +.+|+..|..-++.
T Consensus       239 ~~~Dl~~Aa~LvL~  252 (584)
T PRK13406        239 EEADIALAARLVLA  252 (584)
T ss_pred             CHHHHHHHHHHHCC
T ss_conf             89999999998311


No 204
>pfam06480 FtsH_ext FtsH Extracellular. This domain is found in the FtsH family of proteins. FtsH is the only membrane-bound ATP-dependent protease universally conserved in prokaryotes. It only efficiently degrades proteins that have a low thermodynamic stability - e.g. it lacks robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni FtsH is involved in protection against environmental stress. and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded (personal obs: Yeats C). The precise function of this N-terminal region is unclear.
Probab=97.88  E-value=0.00034  Score=49.39  Aligned_cols=70  Identities=26%  Similarity=0.445  Sum_probs=49.5

Q ss_pred             CCCCCCCEEECHHHHHHHHHHCCEEEEEEECCEEE-------EEEECCCEEEEEE------ECCCCHHHHHHHHHCCCEE
Q ss_conf             77777740215899999997099159999889799-------9995798069998------2688279999999779828
Q gi|254780545|r   17 SAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHIT-------GFYVNGESSFQTY------MPLVGSKLLDKLQSKDIEI   83 (647)
Q Consensus        17 ~~~~~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~-------~~~~~g~~~~~t~------~p~~~~~l~~~L~e~~V~v   83 (647)
                      .......++++||+|++++++|+|++|.+.++.+.       .....+.......      .+...+.+.+.+.+.+++.
T Consensus        20 ~~~~~~~~~i~ys~f~~~l~~~~v~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   99 (104)
T pfam06480        20 LSSSSSTKEISYSEFLELLEAGKVKKVVIDDDEITKPTGDVAGKLKDGSKFTTYFIPTLPSVDSFLEKLEEALVEKGVKV   99 (104)
T ss_pred             CCCCCCCCEECHHHHHHHHHCCCEEEEEEECCEEEECCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             99878750763999999997198659998688875021333314779994487789976656656689999999889879


Q ss_pred             EEE
Q ss_conf             998
Q gi|254780545|r   84 SSR   86 (647)
Q Consensus        84 ~~~   86 (647)
                      ...
T Consensus       100 ~~~  102 (104)
T pfam06480       100 SAK  102 (104)
T ss_pred             EEE
T ss_conf             620


No 205
>KOG1968 consensus
Probab=97.87  E-value=1.1e-05  Score=60.11  Aligned_cols=199  Identities=21%  Similarity=0.306  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCC-CC-CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             5698898528899999999987433567--66420123-33-11003787425888999974246997020585788644
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK--FKRLGGRI-PH-GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~--~~~~g~~~-p~-g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      ..-+++.|...+-..+.+-.+-.+++++  |..-+--- -+ -+|++||||.|||..|.++|.+.|...+....++..+.
T Consensus       317 ~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk  396 (871)
T KOG1968         317 TSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSK  396 (871)
T ss_pred             CCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             30776633520366666588762213335400268615667788731788777205676630120654010475433442


Q ss_pred             HHH---CC----HHHHHHHH---HHHHH-HCC-HHEEHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             420---33----24599999---99987-378-0120632356414-455789886268898899899853032357782
Q gi|254780545|r  221 FVG---VG----ASRVRDMF---EQAKN-NSP-CIVFVDEIDAVGR-HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGV  287 (647)
Q Consensus       221 ~~g---~g----~~~vr~lf---~~a~~-~~p-~iifiDeida~~~-~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v  287 (647)
                      +..   +|    ..-|-..|   ...+. +.+ .||.+||+|..-. .||.         -+-+.+|..     .....|
T Consensus       397 ~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~---------v~~l~~l~~-----ks~~Pi  462 (871)
T KOG1968         397 KELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGG---------VSKLSSLCK-----KSSRPL  462 (871)
T ss_pred             CHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH---------HHHHHHHHH-----HCCCCE
T ss_conf             277766402446640001111113300046660699974255442000136---------999999998-----635776


Q ss_pred             EEEEECCCCCCCCH-HHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99996298100883-331656423141000134788999999985--488777321102454412037989999999998
Q gi|254780545|r  288 ILIAATNRPDVLDA-ALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEA  364 (647)
Q Consensus       288 ~vi~aTn~~~~lD~-al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eA  364 (647)
                      +  .+.|--+.... ++.|.+   .-+++..|+...+..=+.-.+  ....++++ .++.+.+.+    |+||.++.+.-
T Consensus       463 v--~~cndr~~p~sr~~~~~~---~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~~l  532 (871)
T KOG1968         463 V--CTCNDRNLPKSRALSRAC---SDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIMQL  532 (871)
T ss_pred             E--EEECCCCCCCCCCHHHHC---CEEEECCCCHHHHHHHHHHHHCCCCEECCCH-HHHHHHHHC----CCCHHHHHHHH
T ss_conf             8--873377776652022320---0234048857777766653302464241727-889998750----64799999877


Q ss_pred             HHH
Q ss_conf             764
Q gi|254780545|r  365 ALM  367 (647)
Q Consensus       365 a~~  367 (647)
                      ...
T Consensus       533 q~~  535 (871)
T KOG1968         533 QFW  535 (871)
T ss_pred             HHH
T ss_conf             644


No 206
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114   This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=97.82  E-value=4.5e-05  Score=55.69  Aligned_cols=205  Identities=27%  Similarity=0.397  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH----HHHH-
Q ss_conf             8898528899999999987433567664201233311003787425888999974246---9970205857----8864-
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS----DFVE-  219 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s----~~~~-  219 (647)
                      .++.|---|=+|+-.++.=|          .+-+=-||..|-+||||=|.|+|+-.+.   .-||+.++..    |++| 
T Consensus       135 ~~liG~aPAMQevfR~igRL----------~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ES  204 (471)
T TIGR01818       135 AELIGEAPAMQEVFRAIGRL----------SRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIES  204 (471)
T ss_pred             CCCCCCCCHHHHHHHHHHHH----------CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHH
T ss_conf             21236885168999999975----------16960588855757758999998401375557773273023222466554


Q ss_pred             -HHHH-----CCHHHHH-HHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCC-C---CC----
Q ss_conf             -4420-----3324599-99999987378012063235641445578988626889889989985-303-2---35----
Q gi|254780545|r  220 -LFVG-----VGASRVR-DMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDG-F---ES----  283 (647)
Q Consensus       220 -~~~g-----~g~~~vr-~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg-~---~~----  283 (647)
                       +|..     .||...+ -=|++|   ..--+|+|||=-.       ..     .-||  -||-- -|| |   .+    
T Consensus       205 ELFGHEkGAFTGA~~~~~GRFEQA---~GGTLFLDEIGDM-------Pl-----~~QT--RLLRVL~~G~f~rVGG~~p~  267 (471)
T TIGR01818       205 ELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDM-------PL-----DLQT--RLLRVLADGEFYRVGGRTPI  267 (471)
T ss_pred             HHCCCCCCCCCCCCCCCCCCEEEC---CCCCEECCCCCCC-------CH-----HHHH--HHHHHHCCCCEEEECCCEEE
T ss_conf             321456530001025567772534---8882101021678-------77-----6877--79886407865772682024


Q ss_pred             CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHHH----HHHHHHC----CCCCC-CCCCHHHHHH
Q ss_conf             778299996298100883331656423-------141000134788999----9999854----88777-3211024544
Q gi|254780545|r  284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGREH----ILMVHSR----NVPLA-PNVILKTIAR  347 (647)
Q Consensus       284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~~----i~~~~~~----~~~~~-~~~d~~~la~  347 (647)
                      ...|=|||||++-  | .++.|-|+|=       ..|.|.+|-..+|.+    ..+++++    +..+. ..++-+.+..
T Consensus       268 k~DVRi~AAThq~--L-e~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~  344 (471)
T TIGR01818       268 KVDVRIVAATHQD--L-EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELDVEPKLLSPEALEA  344 (471)
T ss_pred             EEEEEEEECCCHH--H-HHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             5504667336656--8-999655881355555123346216872122668999999999998874286511348899999


Q ss_pred             HH-HCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             12-03798--9999999998764553202421045689997
Q gi|254780545|r  348 GT-PGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       348 ~t-~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      .+ -.|=|  -+|+|+|+-   +++-.....|...|+.-.+
T Consensus       345 L~~~~WPGNVR~LEN~cR~---l~~la~~~~v~~~d~~~eL  382 (471)
T TIGR01818       345 LKRYDWPGNVRELENVCRR---LTVLASGDEVLVSDLPAEL  382 (471)
T ss_pred             HHHCCCCCCHHHHHHHHHH---HHHHCCCCEEEEEECCHHH
T ss_conf             9725889852457789999---9873467646777757655


No 207
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.72  E-value=0.00012  Score=52.58  Aligned_cols=198  Identities=21%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHC---CCCCCEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             21000011242256988985288999999999874335-6---7664201---233311003787425888999974246
Q gi|254780545|r  133 SKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDP-Q---KFKRLGG---RIPHGVLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       133 SkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~-~---~~~~~g~---~~p~g~ll~GppGtGKTlla~a~a~e~  205 (647)
                      |....|....+.-+|.+=.-+..+.+.|..+.+-+..+ .   .+..+..   .+|||+-||||=|+|||+|--..=..+
T Consensus        10 sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~l   89 (367)
T COG1485          10 SPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESL   89 (367)
T ss_pred             CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             98999997505677888867899999999999986264445552111003688888358888997864999999998658


Q ss_pred             CCCE-ECCCHHHHH-----HHHHHCCHHHHHHHHHHHHHHC--CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9970-205857886-----4442033245999999998737--8012063235641445578988626889889989985
Q gi|254780545|r  206 NVPF-FTISGSDFV-----ELFVGVGASRVRDMFEQAKNNS--PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE  277 (647)
Q Consensus       206 ~~~f-~~~~~s~~~-----~~~~g~g~~~vr~lf~~a~~~~--p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~  277 (647)
                      -++- ..+-=-.|+     +++.=.|.+-  -+...|+..+  --++-|||+.--      ..+   |  --.|+-||.+
T Consensus        90 p~~~k~R~HFh~FM~~vH~~l~~l~g~~d--pl~~iA~~~~~~~~vLCfDEF~Vt------DI~---D--AMiL~rL~~~  156 (367)
T COG1485          90 PGERKRRLHFHRFMARVHQRLHTLQGQTD--PLPPIADELAAETRVLCFDEFEVT------DIA---D--AMILGRLLEA  156 (367)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHCCCEEEEEEEEEC------CHH---H--HHHHHHHHHH
T ss_conf             76456655077999999999999718888--657999999841788986303623------757---8--8999999999


Q ss_pred             HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--HCCCHH
Q ss_conf             303235778299996298100883331656423141000134788999999985488777321102454412--037989
Q gi|254780545|r  278 MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGT--PGFSGA  355 (647)
Q Consensus       278 mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t--~g~sgA  355 (647)
                      +  |.  .||+++|+.|.+    |--|=+++|-|.-++|-      .++++.|+.-+.++..+|+....-..  .-.+++
T Consensus       157 L--f~--~GV~lvaTSN~~----P~~LY~dGlqR~~FLP~------I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl  222 (367)
T COG1485         157 L--FA--RGVVLVATSNTA----PDNLYKDGLQRERFLPA------IDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPL  222 (367)
T ss_pred             H--HH--CCCEEEEECCCC----HHHHCCCCHHHHHHHHH------HHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCC
T ss_conf             9--97--796899958999----67854460257763779------9999875479970587662356666674455478


Q ss_pred             HH
Q ss_conf             99
Q gi|254780545|r  356 DL  357 (647)
Q Consensus       356 di  357 (647)
                      +-
T Consensus       223 ~~  224 (367)
T COG1485         223 DA  224 (367)
T ss_pred             CH
T ss_conf             67


No 208
>KOG1051 consensus
Probab=97.69  E-value=0.00011  Score=52.81  Aligned_cols=127  Identities=30%  Similarity=0.389  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf             8898528899999999987----433567664201233311003787425888999974246---997020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~----l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~  220 (647)
                      +-|.|+++|...+.+.|.-    +++|        +++--.||.||.|+|||-||||+|...   .-.|+.+..|+|.|.
T Consensus       562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~--------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev  633 (898)
T KOG1051         562 ERVIGQDEAVAAIAAAIRRSRAGLKDP--------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV  633 (898)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHH
T ss_conf             544663778999999998432035788--------888589997888413899999999997288642689614555556


Q ss_pred             HHHCCH-------HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--C-------
Q ss_conf             420332-------459999999987378012063235641445578988626889889989985303235--7-------
Q gi|254780545|r  221 FVGVGA-------SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--S-------  284 (647)
Q Consensus       221 ~~g~g~-------~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--~-------  284 (647)
                      --+.|+       .-.-.|.+.-|..--|||+|||||--           |   ..++|-||.-||-+.-  .       
T Consensus       634 skligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEkA-----------h---~~v~n~llq~lD~GrltDs~Gr~Vd~  699 (898)
T KOG1051         634 SKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------H---PDVLNILLQLLDRGRLTDSHGREVDF  699 (898)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHC-----------C---HHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf             530489955546305778889971699659998302222-----------8---88999999998627400588867504


Q ss_pred             CCEEEEEECCCC
Q ss_conf             782999962981
Q gi|254780545|r  285 EGVILIAATNRP  296 (647)
Q Consensus       285 ~~v~vi~aTn~~  296 (647)
                      .++|||.+.|.-
T Consensus       700 kN~I~IMTsn~~  711 (898)
T KOG1051         700 KNAIFIMTSNVG  711 (898)
T ss_pred             CCEEEEEECCCC
T ss_conf             645999942631


No 209
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=97.68  E-value=9.9e-05  Score=53.21  Aligned_cols=34  Identities=47%  Similarity=0.708  Sum_probs=27.2

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             420123331--1003787425888999974246997
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~  208 (647)
                      -+|+-+|+|  ..++||||||||.||-.+|-++..|
T Consensus        11 ~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~   46 (226)
T cd01393          11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP   46 (226)
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             857998888399999999998999999999998542


No 210
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66  E-value=6.6e-05  Score=54.52  Aligned_cols=84  Identities=27%  Similarity=0.489  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHHHHH
Q ss_conf             569889852889999999998743356766420123331-1003787425888999974246-99702058578864442
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVELFV  222 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~~~~  222 (647)
                      --|+|+-|++++   +..+|.|+|.    ...|...-|= +||+||+|.||+.||+.+-.-. ..|++.+.||...+-=.
T Consensus        55 ~~F~dffGme~~---i~~iV~~~ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e~PL  127 (358)
T pfam08298        55 PAFADFFGMEET---IERIVNYFRH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFESPL  127 (358)
T ss_pred             CCCCCCCCHHHH---HHHHHHHHHH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             542320015999---9999999999----972367210589997789877589999999872058648844897778985


Q ss_pred             HC-CHHHHHHHHHH
Q ss_conf             03-32459999999
Q gi|254780545|r  223 GV-GASRVRDMFEQ  235 (647)
Q Consensus       223 g~-g~~~vr~lf~~  235 (647)
                      +. -+...|++|+.
T Consensus       128 ~L~~p~~~r~~le~  141 (358)
T pfam08298       128 HLFNPHHLRDILED  141 (358)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             47786775999998


No 211
>KOG0732 consensus
Probab=97.65  E-value=3.7e-06  Score=63.55  Aligned_cols=189  Identities=20%  Similarity=0.112  Sum_probs=143.2

Q ss_pred             CCCCCEEECCCCCHHHHHHH-HHHHCCC-----CCCEECCCHHHHHHHHHHCCHH--HHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             23331100378742588899-9974246-----9970205857886444203324--59999999987378012063235
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLA-RAVAGEA-----NVPFFTISGSDFVELFVGVGAS--RVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla-~a~a~e~-----~~~f~~~~~s~~~~~~~g~g~~--~vr~lf~~a~~~~p~iifiDeid  250 (647)
                      ..++++++++|+++++++|+ ...+.++     .+.++.-..++....+|+.-+.  .++-+|..+-..+|...|.++..
T Consensus       529 ~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~l  608 (1080)
T KOG0732         529 SRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYL  608 (1080)
T ss_pred             CCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCC
T ss_conf             77555677888884301031128888875211237764011777767778754111012343270876079866565755


Q ss_pred             HHHC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---------CCCCCHHHCCCCCCCCEEEECHHHH
Q ss_conf             6414-45578988626889889989985303235778299996298---------1008833316564231410001347
Q gi|254780545|r  251 AVGR-HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR---------PDVLDAALLRPGRFDRQITVPNPDI  320 (647)
Q Consensus       251 a~~~-~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~---------~~~lD~al~RpgRfd~~i~~~~P~~  320 (647)
                      .-+- ++-.+.   + ...-.+..||..+|+-+-.+.|+.|++++|         |++-+.+..+|++|+..+...+|..
T Consensus       609 g~aIlh~~~~~---~-v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~~~~l~~~  684 (1080)
T KOG0732         609 GPAILHRLEGL---P-VQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEFLSSLDEK  684 (1080)
T ss_pred             CHHHHHHHHCC---C-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCHHHHCCHHCCHHH
T ss_conf             08999988514---0-5777788987556652478999999998731588334235325565417630433020013556


Q ss_pred             HHHHHHHHHHHCCCCC---CC-CCC-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8899999998548877---73-211-024544120379899999999987645532
Q gi|254780545|r  321 VGREHILMVHSRNVPL---AP-NVI-LKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       321 ~~r~~i~~~~~~~~~~---~~-~~d-~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
                      ..+..|...|....-.   .. -+. ....+..+.+|.+++|+.+|++....+.++
T Consensus       685 ~~~t~i~e~~t~~~~~~~~~~~~~t~~~p~~~s~~~ff~r~I~~~~~~~~~~~~k~  740 (1080)
T KOG0732         685 ALSTPILELHTWDTSFESVNKSVVTLSKPSAESTGAFFKRLIRKISQEPSGEAGKR  740 (1080)
T ss_pred             HHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             50553212105522112367421132432145567888888998740101144577


No 212
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.64  E-value=0.00056  Score=47.77  Aligned_cols=40  Identities=40%  Similarity=0.559  Sum_probs=27.6

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHH----CCCCCCEECCCH
Q ss_conf             420123331--1003787425888999974----246997020585
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVA----GEANVPFFTISG  214 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a----~e~~~~f~~~~~  214 (647)
                      .+|.-+|+|  +|++||||||||.||--++    .+.|-+-+++|.
T Consensus        11 ~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~   56 (231)
T pfam06745        11 ILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL   56 (231)
T ss_pred             HCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             3169982996999985897259999999999999865896899981


No 213
>KOG1970 consensus
Probab=97.63  E-value=0.00058  Score=47.68  Aligned_cols=204  Identities=18%  Similarity=0.221  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH----------
Q ss_conf             69889852889999999998743356766-4201233311003787425888999974246997020585----------
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFK-RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG----------  214 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~-~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~----------  214 (647)
                      |-+|+|=.   |..+.||-+||+.-..+. ++|.   +=.||.||+|||||-.-+-++.|.|.-++.-+.          
T Consensus        80 t~eeLAVH---kkKI~eVk~WL~~~~~~~~~l~~---~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~  153 (634)
T KOG1970          80 TLEELAVH---KKKISEVKQWLKQVAEFTPKLGS---RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENL  153 (634)
T ss_pred             CHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCC---EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
T ss_conf             28887551---77489999999999974536676---0799857988871319999998648021230477665665554


Q ss_pred             ---HHHHHHHHHCCHHHHHHHHHHHHH------------HCCHHEEHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHH
Q ss_conf             ---788644420332459999999987------------378012063235641445578988626-8898899899853
Q gi|254780545|r  215 ---SDFVELFVGVGASRVRDMFEQAKN------------NSPCIVFVDEIDAVGRHRGIGLGGGND-EREQTLNQLLVEM  278 (647)
Q Consensus       215 ---s~~~~~~~g~g~~~vr~lf~~a~~------------~~p~iifiDeida~~~~r~~~~~~~~~-e~~~~ln~ll~~m  278 (647)
                         +.|...+++---......-..|.+            .+|-+|||||+--+..        .|+ +.-|-+-++++..
T Consensus       154 h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~--------~d~~~~f~evL~~y~s~  225 (634)
T KOG1970         154 HNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY--------RDDSETFREVLRLYVSI  225 (634)
T ss_pred             CCCCHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHH--------HHHHHHHHHHHHHHHHC
T ss_conf             5544001330366789999899998762316531333346750798502614440--------03699999999999845


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC-----CEEEECHHHH----HHHHHHHHHHHCCCCCCC-CCCHHHHHHH
Q ss_conf             03235778299996298100883331656423-----1410001347----889999999854887773-2110245441
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDAALLRPGRFD-----RQITVPNPDI----VGREHILMVHSRNVPLAP-NVILKTIARG  348 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd-----~~i~~~~P~~----~~r~~i~~~~~~~~~~~~-~~d~~~la~~  348 (647)
                         ..-.-|++|.-.+.++..++-.++|--+-     .+|.+.+=.-    +.-..|...-.  .++++ .+........
T Consensus       226 ---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~--~~~s~~k~~~~~~v~~  300 (634)
T KOG1970         226 ---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEA--NKKSGIKVPDTAEVEL  300 (634)
T ss_pred             ---CCCCEEEEEECCCCCCCCCHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH
T ss_conf             ---77767999863535787634342426565335852476157767999999999999862--6666676750679999


Q ss_pred             HHCCCHHHHHHHHHHHHHHH
Q ss_conf             20379899999999987645
Q gi|254780545|r  349 TPGFSGADLRNLVNEAALMA  368 (647)
Q Consensus       349 t~g~sgAdi~~~~~eAa~~a  368 (647)
                      .---+|.||.+.+|---+.+
T Consensus       301 i~~~s~GDIRsAInsLQlss  320 (634)
T KOG1970         301 ICQGSGGDIRSAINSLQLSS  320 (634)
T ss_pred             HHHHCCCCHHHHHHHHHHHC
T ss_conf             98752773999987753320


No 214
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.63  E-value=0.0011  Score=45.69  Aligned_cols=246  Identities=19%  Similarity=0.240  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEECCCHH----HHHHH---HHH
Q ss_conf             9999999874335676642012333110037874258889999742469-------970205857----88644---420
Q gi|254780545|r  158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFFTISGS----DFVEL---FVG  223 (647)
Q Consensus       158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~~~~~s----~~~~~---~~g  223 (647)
                      +++.+++..|..-+.  .     .+=|-.+|++|.|||.||+++.+...       +-|+.++.+    ++...   .++
T Consensus         3 ~~~~~i~~~L~~~~~--~-----~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~   75 (285)
T pfam00931         3 DMIEALIEKLLEMSE--N-----LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELG   75 (285)
T ss_pred             HHHHHHHHHHHCCCC--C-----CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             899999999864898--9-----539998899956399999999716556505983899997976668999999999856


Q ss_pred             C--------CHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             3--------324-5999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  224 V--------GAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       224 ~--------g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
                      .        ... ..+.+.+.. +...+.|.+|.+..                +..++.+...+..+..  |--||-+|.
T Consensus        76 ~~~~~~~~~~~~~l~~~l~~~L-~~kr~LiVLDDVw~----------------~~~~~~l~~~~~~~~~--gSrIIvTTR  136 (285)
T pfam00931        76 LDDSDWVEKNESELAVKIKEAL-LRKRFLLVLDDVWE----------------KNDWDKIGVPFPDGEN--GSRVIVTTR  136 (285)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCC----------------HHHHHHHHCCCCCCCC--CCEEEEECC
T ss_conf             6654555578999999999997-27966999638887----------------8999997345757899--827998557


Q ss_pred             CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8100883331656423141000134788999999985488777321102----454412037989999999998764553
Q gi|254780545|r  295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILK----TIARGTPGFSGADLRNLVNEAALMAAR  370 (647)
Q Consensus       295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~----~la~~t~g~sgAdi~~~~~eAa~~a~r  370 (647)
                      ..+....    .+.-+..+.+...+.++=.++|..|.-.......-+++    .+++.+.|. +--|..+   ++++..+
T Consensus       137 ~~~V~~~----~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~Gl-PLai~~l---g~~L~~k  208 (285)
T pfam00931       137 SESVAGR----MGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGL-PLALKVL---GGLLAFK  208 (285)
T ss_pred             CHHHHHH----CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHH---HHHHCCC
T ss_conf             5899987----378883476168987999999999846898999767999999999985899-4999999---9997179


Q ss_pred             HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH-----CCCCCCHHHHHHHCCCCCCCCEE
Q ss_conf             2024210456899975013686556766686-6778999999999999985-----05877323432201455564056
Q gi|254780545|r  371 RNRRLVTMQEFEDAKDKILMGAERRSTAMTE-EEKKITAYHEAGHAVVACH-----VPKADPLHKATIIPRGRALGMVM  443 (647)
Q Consensus       371 ~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~-~ek~~vAyHEAGHAlva~~-----l~~~~~v~kVTIipRg~alG~t~  443 (647)
                        .   +...-..++++.....+..+. ..+ ...-..+|..-.+.+=.++     .|....+.+=.++.+.-|.||.+
T Consensus       209 --~---~~~~W~~~l~~l~~~~~~~~~-~~~i~~~l~~sY~~Lp~~lk~CfLy~s~FP~~~~i~~~~Lv~~WiaeGfi~  281 (285)
T pfam00931       209 --S---TVQEWEHVLEQLNNELAGRDG-LNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI  281 (285)
T ss_pred             --C---CHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCC
T ss_conf             --9---899999999975113644764-889999999998379999999999986688997870999999999779989


No 215
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.59  E-value=0.00013  Score=52.38  Aligned_cols=203  Identities=22%  Similarity=0.234  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHHCCCCCCEECCCHHHHH
Q ss_conf             6988985288999999---9998743---35676642012333110037874258889-999742469970205857886
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQ---EIVDFLC---DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~---~~v~~l~---~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a~e~~~~f~~~~~s~~~  218 (647)
                      .+..|+|..---++++   ++|-.--   ..++|...-...-||++++||||.||||| .-++-++.-+-+..+.-|-- 
T Consensus      1453 ~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~- 1531 (3164)
T COG5245        1453 NNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC- 1531 (3164)
T ss_pred             CCCCCCCCEECHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCC-
T ss_conf             3666677010102430467731245331319989999874063499978999751011263666543001567751124-


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCC---------------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             44420332459999999987378---------------012063235641445578988626889889989985303235
Q gi|254780545|r  219 ELFVGVGASRVRDMFEQAKNNSP---------------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES  283 (647)
Q Consensus       219 ~~~~g~g~~~vr~lf~~a~~~~p---------------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~  283 (647)
                          -.+++.++-|-+.- ..-|               -|+|-|||. +  .|+...+..++-  --+-| |.|-.||=.
T Consensus      1532 ----t~T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~lVLFcDeIn-L--p~~~~y~~~~vI--~FlR~-l~e~QGfw~ 1600 (3164)
T COG5245        1532 ----TMTPSKLSVLERET-EYYPNTGVVRLYPKPVVKDLVLFCDEIN-L--PYGFEYYPPTVI--VFLRP-LVERQGFWS 1600 (3164)
T ss_pred             ----CCCHHHHHHHHHHC-EEECCCCEEEECCCCCHHHEEEEEECCC-C--CCCCCCCCCCEE--EEEHH-HHHHCCCCC
T ss_conf             ----57788999998640-1523688279766742132178731147-7--420013897448--86287-787525555


Q ss_pred             C--------CCEEEEEECCCCCCCCHH-HCCCCCCCC---EEEECHHHHHHHHHHHHHHHCCCCC-CCCCC--HHHHHHH
Q ss_conf             7--------782999962981008833-316564231---4100013478899999998548877-73211--0245441
Q gi|254780545|r  284 S--------EGVILIAATNRPDVLDAA-LLRPGRFDR---QITVPNPDIVGREHILMVHSRNVPL-APNVI--LKTIARG  348 (647)
Q Consensus       284 ~--------~~v~vi~aTn~~~~lD~a-l~RpgRfd~---~i~~~~P~~~~r~~i~~~~~~~~~~-~~~~d--~~~la~~  348 (647)
                      +        .|+++.||.|-+.  ||. .-=|-||-|   .++++.|....-..|...++.+.-+ -+..+  .+.+++.
T Consensus      1601 s~~~~wvTI~~i~l~Gacnp~t--d~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~a 1678 (3164)
T COG5245        1601 SIAVSWVTICGIILYGACNPGT--DEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSA 1678 (3164)
T ss_pred             CHHHHHHHHCCEEEECCCCCCC--CCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3666576211359983689999--96657527787468359996286334499999999998888459898877999888


Q ss_pred             ------------------HHCCCHHHHHHHHH
Q ss_conf             ------------------20379899999999
Q gi|254780545|r  349 ------------------TPGFSGADLRNLVN  362 (647)
Q Consensus       349 ------------------t~g~sgAdi~~~~~  362 (647)
                                        --||+|.||...++
T Consensus      1679 Sv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245        1679 SVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             89999999886523200000337378889999


No 216
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.54  E-value=0.00023  Score=50.52  Aligned_cols=132  Identities=24%  Similarity=0.387  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH----HHHHH------------------
Q ss_conf             43356766420123331--1003787425888999974246---997020585----78864------------------
Q gi|254780545|r  167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG----SDFVE------------------  219 (647)
Q Consensus       167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~----s~~~~------------------  219 (647)
                      +.+-+.=..+|.-+|+|  +|+.|.||||||.++.-++...   |.+.+++|-    .+|++                  
T Consensus         8 ~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l   87 (230)
T PRK08533          8 LDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKL   87 (230)
T ss_pred             CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCE
T ss_conf             57135788717898898489998689987899999999999878986999994389999999999869981799757967


Q ss_pred             ----HHHH-CCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             ----4420-3324----599999999873780120632356414455789886268898899899853032357782999
Q gi|254780545|r  220 ----LFVG-VGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI  290 (647)
Q Consensus       220 ----~~~g-~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi  290 (647)
                          .|-. .+.+    .+.++-...+...+-+|.||-+.++...-         ..++.+.+++..+--+.....++++
T Consensus        88 ~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~---------~~~~~~~~~~~~lk~l~s~gktIil  158 (230)
T PRK08533         88 LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRD---------ASEVQIRDLMAFFKRISSLNKVIIL  158 (230)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC---------CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9996134335404578999999732664379899990531885167---------7789999999999999858988999


Q ss_pred             EECCCCCCCCHHHCCCCCC
Q ss_conf             9629810088333165642
Q gi|254780545|r  291 AATNRPDVLDAALLRPGRF  309 (647)
Q Consensus       291 ~aTn~~~~lD~al~RpgRf  309 (647)
                        |-.|..+|...+.+=|+
T Consensus       159 --Tv~p~~~~e~~l~~lrs  175 (230)
T PRK08533        159 --TANPKELPESVLLILRT  175 (230)
T ss_pred             --EECCCCCCHHHHHHHHE
T ss_conf             --95633136245442041


No 217
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.54  E-value=0.0001  Score=53.08  Aligned_cols=46  Identities=28%  Similarity=0.650  Sum_probs=36.5

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             100378742588899997424699702058578864442033245999999
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE  234 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~  234 (647)
                      |.|.|+||||||.++|++|...++||+-+.  ..++...|..   ++++|+
T Consensus         2 I~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~~~g~s---i~eif~   47 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGMS---IPEIFA   47 (154)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC---HHHHHH
T ss_conf             899889999889999999999798979685--9999994999---999998


No 218
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.54  E-value=0.01  Score=38.71  Aligned_cols=181  Identities=18%  Similarity=0.204  Sum_probs=98.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-H---HHHH--CCHHHHHHHHHHHHHHC------C-HH
Q ss_conf             012333110037874258889999742469970205857886-4---4420--33245999999998737------8-01
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-E---LFVG--VGASRVRDMFEQAKNNS------P-CI  243 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~---~~~g--~g~~~vr~lf~~a~~~~------p-~i  243 (647)
                      +-+-|.=+|+-|+||+|||.+|.-+|.+.|.+-+  -++|++ |   .+++  .-+.--...|..-+...      | |.
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v--isTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia  162 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSV--ISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA  162 (299)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEE--ECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             1578759996178877725799999997298610--04247999999737977455356757799998368999961313


Q ss_pred             EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHH
Q ss_conf             20632356414455789886268898899899853032357782999962981008833316564231410001347889
Q gi|254780545|r  244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGR  323 (647)
Q Consensus       244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r  323 (647)
                      =|.|-..++-       .|    -+.+++--+      .+...+|+=+--=-|..+++..+  +--...+++..+|.+.-
T Consensus       163 GF~dqa~~V~-------~G----I~~VI~RAi------~eG~~lIIEGvHlVPg~i~~~~~--~~n~~~~~l~i~dee~H  223 (299)
T COG2074         163 GFEDQASAVM-------VG----IEAVIERAI------EEGEDLIIEGVHLVPGLIKEEAL--GNNVFMFMLYIADEELH  223 (299)
T ss_pred             HHHHHHHHHH-------HH----HHHHHHHHH------HCCCCEEEEEEEECCCCCCHHHH--CCCEEEEEEEECCHHHH
T ss_conf             1787767999-------88----999999998------53753588742115002167661--35517899983887899


Q ss_pred             HHHHHHHHC----CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf             999999854----887773211024544120379899999999987645532024210456899975013
Q gi|254780545|r  324 EHILMVHSR----NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKIL  389 (647)
Q Consensus       324 ~~i~~~~~~----~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~  389 (647)
                      ++=|---.+    +.|.      ...++..     -++.++...-...|-.+|-..|..+|+++++++++
T Consensus       224 r~RF~~R~~~t~~~rp~------~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il  282 (299)
T COG2074         224 RERFYDRIRYTHASRPG------GRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRIL  282 (299)
T ss_pred             HHHHHHHHHHHHCCCCH------HHHHHHH-----HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf             99999988887605965------6799999-----99999999999988865998112531999999999


No 219
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.54  E-value=7.8e-05  Score=53.98  Aligned_cols=86  Identities=27%  Similarity=0.434  Sum_probs=49.3

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCC--------CCEECCC-HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf             10037874258889999742469--------9702058-57886444203324599999999873780120632356414
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEAN--------VPFFTIS-GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR  254 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~--------~~f~~~~-~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~  254 (647)
                      |.||||||||||.+|+.+|....        -.+++.. .++|-..|.                 .+-|+.+||+.+.- 
T Consensus         1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~wdgY~-----------------gq~vvi~DD~~~~~-   62 (105)
T pfam00910         1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWDGYT-----------------GQPVVIIDDFGQNP-   62 (105)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC-----------------CCEEEEEECCCCCC-
T ss_conf             989799989889999999999999837787897796788776567889-----------------98579996577788-


Q ss_pred             CCCCCCCCCCHHHHHHHHHH------HHHHCCCCCC----CCEEEEEECCC
Q ss_conf             45578988626889889989------9853032357----78299996298
Q gi|254780545|r  255 HRGIGLGGGNDEREQTLNQL------LVEMDGFESS----EGVILIAATNR  295 (647)
Q Consensus       255 ~r~~~~~~~~~e~~~~ln~l------l~~mdg~~~~----~~v~vi~aTn~  295 (647)
                        .    +..++  ..+.++      -..|+..+..    .-.+||++||.
T Consensus        63 --~----~~~~~--~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~  105 (105)
T pfam00910        63 --D----GPSDE--AELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF  105 (105)
T ss_pred             --C----CCHHH--HHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf             --8----62889--9999875699838886676148884468889994799


No 220
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.52  E-value=4.1e-05  Score=55.97  Aligned_cols=144  Identities=31%  Similarity=0.407  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHHHHHHHCCHHHHHHHH--------
Q ss_conf             33567664201233311003787425888999974246997020585------7886444203324599999--------
Q gi|254780545|r  168 CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFVELFVGVGASRVRDMF--------  233 (647)
Q Consensus       168 ~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~~~~~g~g~~~vr~lf--------  233 (647)
                      ..-.+|-+-|    +-|=|.||.|||||-||.++|.+.+-|.+-+.|      ||++--|-|-..++|-|=|        
T Consensus        12 ~R~l~yL~~G----~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~   87 (265)
T TIGR02640        12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLE   87 (265)
T ss_pred             HHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCC
T ss_conf             9876632278----866744788855689999999736896899865823265442315467522223201211134251


Q ss_pred             ------------HHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------HHCCCCCCCC-------E
Q ss_conf             ------------9998737801206323564144557898862688988998998-------5303235778-------2
Q gi|254780545|r  234 ------------EQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-------EMDGFESSEG-------V  287 (647)
Q Consensus       234 ------------~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-------~mdg~~~~~~-------v  287 (647)
                                  -.|-+. ..-+.-||+-   |.|-           .|=|=||.       ++-|-...+.       -
T Consensus        88 d~~~~~W~D~rLt~Av~e-G~TLVYdEF~---RskP-----------~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~F  152 (265)
T TIGR02640        88 DIVRQNWVDNRLTLAVRE-GFTLVYDEFT---RSKP-----------ETNNVLLSVLEEGVLELPGKRGESRYVDVHPEF  152 (265)
T ss_pred             CCCCCCCCCCHHHHHHHC-CCEEEECCCC---CCCC-----------HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf             220026678357899756-9727664757---8862-----------045656755552321588878778722578870


Q ss_pred             EEEEECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf             99996298100-----88333165642314100013478899999998548
Q gi|254780545|r  288 ILIAATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN  333 (647)
Q Consensus       288 ~vi~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~  333 (647)
                      =+|-+.|-.+.     =-.||+=  |+ -.|+++.||...-.+|+.-|...
T Consensus       153 R~IfTSNp~EYAGVh~~QDALlD--RL-~ti~~D~~D~~~e~ai~~~~t~~  200 (265)
T TIGR02640       153 RVIFTSNPVEYAGVHETQDALLD--RL-VTISMDYPDEDTETAILRAKTDV  200 (265)
T ss_pred             CEEECCCCCCCCCCCCHHHHHHH--HH-CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             24631487010576771667766--44-00457854447899999986061


No 221
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49  E-value=0.00013  Score=52.38  Aligned_cols=43  Identities=30%  Similarity=0.577  Sum_probs=35.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             331100378742588899997424699702058578864442033
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g  225 (647)
                      -|-|.|.|+||||||.++|.+|...++||+-+.  +.+|...|..
T Consensus         4 kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D--~~Ie~~~g~s   46 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD--QEIEKRTGAD   46 (172)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCCC
T ss_conf             882898899999889999999999699968780--9999997989


No 222
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.49  E-value=0.0011  Score=45.61  Aligned_cols=73  Identities=22%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHH--------------HHHHCC-----------------
Q ss_conf             331100378742588899997424----699702058578864--------------442033-----------------
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVE--------------LFVGVG-----------------  225 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~--------------~~~g~g-----------------  225 (647)
                      .+-+|+.|+||||||.||--+.-+    -|-|-++++-++-.+              .+...+                 
T Consensus        24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~  103 (501)
T PRK09302         24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEA  103 (501)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf             97799983899999999999999998855997899985799999999999849986897326838999615674311133


Q ss_pred             -H----HHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf             -2----459999999987378012063235641
Q gi|254780545|r  226 -A----SRVRDMFEQAKNNSPCIVFVDEIDAVG  253 (647)
Q Consensus       226 -~----~~vr~lf~~a~~~~p~iifiDeida~~  253 (647)
                       .    .-++.+-+..++..|..|+||=|.++.
T Consensus       104 ~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~  136 (501)
T PRK09302        104 GEYDLSALIERIEYAIRKIKAKRVVIDSIEALF  136 (501)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf             447689999999999997199999999978998


No 223
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.46  E-value=0.00093  Score=46.19  Aligned_cols=40  Identities=40%  Similarity=0.603  Sum_probs=28.6

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf             420123331--1003787425888999974246---997020585
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG  214 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~  214 (647)
                      -+|+-+|+|  ++++||||+|||.||--+|.++   |-..+++++
T Consensus        15 ~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidt   59 (224)
T PRK09361         15 LLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDT   59 (224)
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             626998888799998999985999999999999974990999678


No 224
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46  E-value=0.00014  Score=52.22  Aligned_cols=51  Identities=24%  Similarity=0.469  Sum_probs=38.2

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             33311003787425888999974246997020585788644420332459999999
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ  235 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~  235 (647)
                      ..+.|.|.|+||+|||.++|++|...++||+-+.  ..++...|.   .+.++|+.
T Consensus         3 ~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D--~~Ie~~~g~---si~~if~~   53 (175)
T PRK00131          3 KGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTD--HLIEARAGK---SIPEIFEE   53 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC--HHHHHHHCC---CHHHHHHH
T ss_conf             9980898889999989999999999596902398--899976169---99999998


No 225
>KOG0478 consensus
Probab=97.46  E-value=0.0017  Score=44.31  Aligned_cols=119  Identities=29%  Similarity=0.383  Sum_probs=66.2

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHHHCCHHHHH-----HHHHHHHH---HCCHHEEHHHHHHH
Q ss_conf             311003787425888999974246997-0205857886444203324599-----99999987---37801206323564
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFVGVGASRVR-----DMFEQAKN---NSPCIVFVDEIDAV  252 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~g~g~~~vr-----~lf~~a~~---~~p~iifiDeida~  252 (647)
                      -.|||+|-|||||+-+-+-++.=+--- +-+-.||.    -||.++.-.|     ++--+.-+   .---|.-|||+|-+
T Consensus       463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS----avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM  538 (804)
T KOG0478         463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS----AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM  538 (804)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----HHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHH
T ss_conf             228994699867899999999747754040587630----2200356776576554665048489728965771123333


Q ss_pred             -HCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCC--CCCCEEEEEECCC------C-----C--CCCHHHCCCC
Q ss_conf             -144557898862688988998998530---------323--5778299996298------1-----0--0883331656
Q gi|254780545|r  253 -GRHRGIGLGGGNDEREQTLNQLLVEMD---------GFE--SSEGVILIAATNR------P-----D--VLDAALLRPG  307 (647)
Q Consensus       253 -~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~--~~~~v~vi~aTn~------~-----~--~lD~al~Rpg  307 (647)
                       ..+|               +-|+..|.         |.-  =|..-=|+||.|-      |     +  .|.|-||+  
T Consensus       539 ~dStr---------------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--  601 (804)
T KOG0478         539 SDSTR---------------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--  601 (804)
T ss_pred             HHHHH---------------HHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHH--
T ss_conf             27788---------------9999999876311743022342166530344535432457999762321678805643--


Q ss_pred             CCCCEE-EECHHHHH
Q ss_conf             423141-00013478
Q gi|254780545|r  308 RFDRQI-TVPNPDIV  321 (647)
Q Consensus       308 Rfd~~i-~~~~P~~~  321 (647)
                      |||-.+ .++.||..
T Consensus       602 RFDLIylllD~~DE~  616 (804)
T KOG0478         602 RFDLIFLLLDKPDER  616 (804)
T ss_pred             HHCEEEEEECCCCHH
T ss_conf             233789984275326


No 226
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45  E-value=0.013  Score=37.94  Aligned_cols=125  Identities=21%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             HHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH---HHHHHCCHHEEHHHHHHH
Q ss_conf             20123331100378742588899997424699702058578864442033245999999---998737801206323564
Q gi|254780545|r  176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE---QAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~---~a~~~~p~iifiDeida~  252 (647)
                      +...++ =++++||-+||||.+.+-+.....-.+++++--|...-.     .+..+.+.   .+.....+.||+|||..+
T Consensus        33 ~~~~~~-i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~~d~~~~~-----~~l~d~~~~~~~~~~~~~~yifLDEIq~v  106 (398)
T COG1373          33 LDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR-----IELLDLLRAYIELKEREKSYIFLDEIQNV  106 (398)
T ss_pred             HCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             035785-499988864778999999997477735999736200013-----56778999999852225745999833376


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHH
Q ss_conf             144557898862688988998998530323577829999629810088333165642314100013478899
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGRE  324 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~  324 (647)
                                  .+.++.|+-|.   |....  .|++.|.+-..-....+-.=|||.......|+ +..+..
T Consensus       107 ------------~~W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~s~~L~GR~~~~~l~Pl-SF~Efl  160 (398)
T COG1373         107 ------------PDWERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPL-SFREFL  160 (398)
T ss_pred             ------------HHHHHHHHHHH---CCCCC--EEEEECCCHHHHCCCHHHHCCCCEEEEEECCC-CHHHHH
T ss_conf             ------------10899999997---56775--09998371675413302324998237898488-889986


No 227
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622   DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=97.43  E-value=0.00041  Score=48.75  Aligned_cols=154  Identities=22%  Similarity=0.319  Sum_probs=100.8

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------------EECCCHHHHHH---HHHH--------------
Q ss_conf             01233311003787425888999974246997----------------02058578864---4420--------------
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------------FFTISGSDFVE---LFVG--------------  223 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------------f~~~~~s~~~~---~~~g--------------  223 (647)
                      ..++|-..||+||+|+||.+||.++|...-+.                |-+-+.+||.-   -.-.              
T Consensus        10 ~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~~g   89 (216)
T TIGR00678        10 KGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGEEG   89 (216)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCC
T ss_conf             06788612544488874899999999998077857788888588899987079982378742347777776458976256


Q ss_pred             ---------CCHHHHHHHHHHHH----HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             ---------33245999999998----73780120632356414455789886268898899899853032357782999
Q gi|254780545|r  224 ---------VGASRVRDMFEQAK----NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI  290 (647)
Q Consensus       224 ---------~g~~~vr~lf~~a~----~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi  290 (647)
                               .+-..||+|=+..-    ...-=||.||..|.+.              ++-=|.||--+.  +...++++|
T Consensus        90 ~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn--------------~~AANALLKtLE--EPp~~t~fi  153 (216)
T TIGR00678        90 SAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMN--------------EAAANALLKTLE--EPPPNTLFI  153 (216)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHEE--CCCCCEEEE
T ss_conf             4211367878727899999998606421475179976732325--------------898986510101--279870798


Q ss_pred             EECCCC--CCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHCCCH
Q ss_conf             962981--00883331-65642314100013478899999998548877732--110245441203798
Q gi|254780545|r  291 AATNRP--DVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPN--VILKTIARGTPGFSG  354 (647)
Q Consensus       291 ~aTn~~--~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~--~d~~~la~~t~g~sg  354 (647)
                      =.|+.|  +.|=|-|. |    =+++.|..|+.+.-.++|.-..    ..++  -+...+++.+.|.-+
T Consensus       154 L~~~~~DP~~lLpTI~SR----Cq~~~f~~l~~~~~~~~L~~~g----~~~~~~~~a~~~~~~~~G~p~  214 (216)
T TIGR00678       154 LITHSPDPERLLPTIRSR----CQVLPFPPLSEEALLQWLIEQG----ISENVPEAAELLLALAGGSPG  214 (216)
T ss_pred             EECCCCCHHHHCCCCCCC----EEEEEECCCCHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCCCCC
T ss_conf             850888843322111032----0158625998899999999708----787806899999998468512


No 228
>PRK13947 shikimate kinase; Provisional
Probab=97.41  E-value=0.00017  Score=51.52  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=32.9

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH
Q ss_conf             311003787425888999974246997020585788644420
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG  223 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g  223 (647)
                      |-|.|.|+||||||.++|.+|...++||+-+.  +.+|...|
T Consensus         2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D--~~Ie~~~g   41 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTD--KEIEKMAG   41 (171)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHCC
T ss_conf             85899799999889999999999796989874--99998829


No 229
>PRK13948 shikimate kinase; Provisional
Probab=97.41  E-value=0.00022  Score=50.72  Aligned_cols=53  Identities=25%  Similarity=0.374  Sum_probs=40.5

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             2333110037874258889999742469970205857886444203324599999999
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA  236 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a  236 (647)
                      +|.+-|.|.|+||+|||.++|.+|...++||+-+.  ..+|...|.   .|.++|++-
T Consensus         8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D--~~Ie~~~g~---sI~eIF~~~   60 (182)
T PRK13948          8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTD--KLITRVVGK---SIPEVFAQE   60 (182)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCC---CHHHHHHHH
T ss_conf             99981898899999889999999999695988884--999998893---999999984


No 230
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=97.41  E-value=0.00031  Score=49.60  Aligned_cols=21  Identities=57%  Similarity=0.773  Sum_probs=18.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCC
Q ss_conf             100378742588899997424
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e  204 (647)
                      +...||+|||||++|-|.|-+
T Consensus        22 v~~~GpAGtGKT~la~~~al~   42 (205)
T pfam02562        22 VFGIGPAGTGKTYLAVAAAVD   42 (205)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             799899986099999999999


No 231
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.39  E-value=8.9e-05  Score=53.57  Aligned_cols=29  Identities=31%  Similarity=0.688  Sum_probs=25.3

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             10037874258889999742469970205
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      |...||||+|||-.||-+|.+.+.+++|.
T Consensus         3 I~ISGpPGSGktTvA~~lA~~Lsl~~iSa   31 (173)
T TIGR02173         3 ITISGPPGSGKTTVAKILAEKLSLKLISA   31 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf             88735896864789999998639831202


No 232
>PRK13946 shikimate kinase; Provisional
Probab=97.39  E-value=0.00021  Score=50.90  Aligned_cols=49  Identities=27%  Similarity=0.458  Sum_probs=37.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             311003787425888999974246997020585788644420332459999999
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ  235 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~  235 (647)
                      |-|.|.|+||+|||.++|.+|...++||+-+..  .+|...|..   |.++|+.
T Consensus        21 knIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~--~IE~~~g~s---I~eIF~~   69 (195)
T PRK13946         21 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT--EIERAARMT---IPEIFAT   69 (195)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH--HHHHHHCCC---HHHHHHH
T ss_conf             958998999998899999999997979898859--999980998---9999998


No 233
>PRK13949 shikimate kinase; Provisional
Probab=97.38  E-value=0.00023  Score=50.53  Aligned_cols=49  Identities=35%  Similarity=0.526  Sum_probs=36.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             311003787425888999974246997020585788644420332459999999
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ  235 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~  235 (647)
                      +-|.|.|+||+|||.++|++|...++||+-+.  ..+|...|.   .|.++|+.
T Consensus         2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D--~~Ie~~~g~---sI~eif~~   50 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD--FFIENRFHK---TVGDIFAE   50 (169)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCC---CHHHHHHH
T ss_conf             83899799999889999999999599979784--999998599---99999998


No 234
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.38  E-value=0.00054  Score=47.87  Aligned_cols=250  Identities=26%  Similarity=0.329  Sum_probs=123.3

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHCCHHHHHHHH--H---HHHH---HCCHHEEHHHHHHHH
Q ss_conf             110037874258889999742469-970205857886444203324599999--9---9987---378012063235641
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGVGASRVRDMF--E---QAKN---NSPCIVFVDEIDAVG  253 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~g~~~vr~lf--~---~a~~---~~p~iifiDeida~~  253 (647)
                      .|||.|-|||||+-|-|-+++-+- .-|.+-.||+    -+|.+|+-+|+-+  +   .|-+   ..+-|.-|||+|-.-
T Consensus       321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~  396 (682)
T COG1241         321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN  396 (682)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCC----CCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEECCCCC
T ss_conf             69981798251999999988648840797264125----45730699970677607886777999249779997056777


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCC--------EEEEEECCCCC-------------CCCHHHCCCCCC
Q ss_conf             445578988626889889989985303--23-5778--------29999629810-------------088333165642
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDG--FE-SSEG--------VILIAATNRPD-------------VLDAALLRPGRF  309 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~-~~~~--------v~vi~aTn~~~-------------~lD~al~RpgRf  309 (647)
                                 +   ..-+.+..-|.-  .+ ...|        -=|+||.|=..             .|+++||-  ||
T Consensus       397 -----------~---~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RF  460 (682)
T COG1241         397 -----------E---EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RF  460 (682)
T ss_pred             -----------H---HHHHHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH--HC
T ss_conf             -----------6---7899999998752751205542541114444566518877767999997885589835775--17


Q ss_pred             CCEEE-ECHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             31410-001347889----9999998548877732110245441203798999999999876455320242104568999
Q gi|254780545|r  310 DRQIT-VPNPDIVGR----EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDA  384 (647)
Q Consensus       310 d~~i~-~~~P~~~~r----~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A  384 (647)
                      |-.+. .+-||.+.=    ..|+..|....+-..           .+.++  ...                +...+++--
T Consensus       461 DLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~-----------~~~~~--~~~----------------~~~~~~~~l  511 (682)
T COG1241         461 DLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET-----------ISLDG--VDE----------------VEERDFELL  511 (682)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC-----------CCCCC--CCC----------------CCCCCHHHH
T ss_conf             7547705788853359999999998634565322-----------33332--222----------------234658999


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHH
Q ss_conf             75013686556766686677899999999999998505877323432201455564056400244322689999999999
Q gi|254780545|r  385 KDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTI  464 (647)
Q Consensus       385 ~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v  464 (647)
                      .--|.+...+....++++-+         -.+..|++.         .  |.....  ..  ....+-.|..+|++-|..
T Consensus       512 rkYI~YAR~~v~P~lt~ea~---------e~l~~~Yv~---------~--Rk~~~~--~~--~~~~~piT~RqLEsiiRL  567 (682)
T COG1241         512 RKYISYARKNVTPVLTEEAR---------EELEDYYVE---------M--RKKSAL--VE--EKRTIPITARQLESIIRL  567 (682)
T ss_pred             HHHHHHHHCCCCCCCCHHHH---------HHHHHHHHH---------H--HHCCCC--CC--CCCCCCCCHHHHHHHHHH
T ss_conf             99999875058961289999---------999999987---------6--520122--34--567545619999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             987898888861368756523355899999999998624888766733
Q gi|254780545|r  465 LMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKV  512 (647)
Q Consensus       465 ~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i  512 (647)
                      +.|=   -.+-+- +.++   ..|...|-++-.....+.++...-|-+
T Consensus       568 aeA~---Ak~rLS-~~V~---~eD~~eAi~lv~~~l~~v~~dp~~g~~  608 (682)
T COG1241         568 AEAH---AKMRLS-DVVE---EEDVDEAIRLVDFSLKTVAVDPEKGKI  608 (682)
T ss_pred             HHHH---HHHHCC-CCCC---HHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             9998---865444-7778---899999999999998886137567721


No 235
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.36  E-value=0.0012  Score=45.35  Aligned_cols=183  Identities=28%  Similarity=0.420  Sum_probs=99.4

Q ss_pred             CEEECCCCCHHHHHHHHHHHCC--CCCCEECCCHH----HHH-HHHHH------CCHHH--HHHHHHHHHHHCCHHEEHH
Q ss_conf             1100378742588899997424--69970205857----886-44420------33245--9999999987378012063
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGE--ANVPFFTISGS----DFV-ELFVG------VGASR--VRDMFEQAKNNSPCIVFVD  247 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e--~~~~f~~~~~s----~~~-~~~~g------~g~~~--vr~lf~~a~~~~p~iifiD  247 (647)
                      -+|+.|-|||||-.||||+-..  ..-||+.+.+.    +.+ |+|+|      .|+++  -+-+|++|-   --.+|.|
T Consensus       338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld  414 (606)
T COG3284         338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD  414 (606)
T ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEECC---CCCCHHH
T ss_conf             7685387655689999999853655698379985034477646777445765643300106655410157---8760898


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEE-------E
Q ss_conf             235641445578988626889889989985-----3032357782999962981008833316564231410-------0
Q gi|254780545|r  248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVE-----MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQIT-------V  315 (647)
Q Consensus       248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~-----mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~-------~  315 (647)
                      ||--+.-          +-. .-|-+.|.|     ++|-...-.|=||+||+++=   ..|.|-|||-+-.|       |
T Consensus       415 eIgd~p~----------~~Q-s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i  480 (606)
T COG3284         415 EIGDMPL----------ALQ-SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVI  480 (606)
T ss_pred             HHHHCHH----------HHH-HHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCH---HHHHHCCCCHHHHHHHHCCEEE
T ss_conf             7611418----------999-9999998618252358852157799983467579---9998759714878887447155


Q ss_pred             CHHHHHHHH---HHHHHHH-CC----CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             013478899---9999985-48----87773211024544120379899999999987645532024210456899975
Q gi|254780545|r  316 PNPDIVGRE---HILMVHS-RN----VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKD  386 (647)
Q Consensus       316 ~~P~~~~r~---~i~~~~~-~~----~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~  386 (647)
                      .+|-..+|.   ..|..++ +.    ..+++|.--.-++..=|| -=-+|-|++..+++++   +.-.|...|+...+-
T Consensus       481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~  555 (606)
T COG3284         481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELL  555 (606)
T ss_pred             CCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC---CCCEEECCCCCHHHH
T ss_conf             06861104665789999998726877568999999998578998-2899999999998707---997357144988887


No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34  E-value=0.0013  Score=45.09  Aligned_cols=40  Identities=40%  Similarity=0.569  Sum_probs=27.4

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf             420123331--1003787425888999974246---997020585
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG  214 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~  214 (647)
                      -+|+-+|+|  ++++||||+|||.|+--+|.++   +-.-+++++
T Consensus        11 vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt   55 (218)
T cd01394          11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT   55 (218)
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             856998788799998999984999999999998636986999966


No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33  E-value=0.00045  Score=48.45  Aligned_cols=30  Identities=37%  Similarity=0.463  Sum_probs=22.1

Q ss_pred             EEECCCCCHHHHHHHHHHHCC---CCCCEECCC
Q ss_conf             100378742588899997424---699702058
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE---ANVPFFTIS  213 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e---~~~~f~~~~  213 (647)
                      .|+.||||||||.||--++.+   .|-+.++++
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             158768999999999999999987699789999


No 238
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.32  E-value=0.0036  Score=41.90  Aligned_cols=139  Identities=22%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCHH-----------HHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf             311003787425888999974246---------9970205857-----------88644420332459999999987378
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISGS-----------DFVELFVGVGASRVRDMFEQAKNNSP  241 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~s-----------~~~~~~~g~g~~~vr~lf~~a~~~~p  241 (647)
                      |=|++.|+||.|||.|++-+|-.+         ..||+ ++..           +++..........+.+.|.....+.+
T Consensus         1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~-~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~   79 (165)
T pfam05729         1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFF-LPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPE   79 (165)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE-EEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf             98999827989899999999999986984369728999-99567077766899999998767745763789999983977


Q ss_pred             HH-EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCC--HHHCCCCCCCCEEEECH
Q ss_conf             01-2063235641445578988626889889989985-30323577829999629810088--33316564231410001
Q gi|254780545|r  242 CI-VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLD--AALLRPGRFDRQITVPN  317 (647)
Q Consensus       242 ~i-ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD--~al~RpgRfd~~i~~~~  317 (647)
                      .+ +.+|-+|-+....+....      .+-+..+|.. +-|--=...-++|  |-||...+  +..++   -+.+++|.-
T Consensus        80 k~L~ilDGlDE~~~~~~~~~~------~~~~~~~l~~ll~~~~lp~~~vli--TsRp~~~~~l~~~~~---~~~~~ei~G  148 (165)
T pfam05729        80 RVLLILDGLDELASDLGQLDG------PLPVLTLLSSLLRKKLLPGASLLL--TSRPDALRDLRRGLE---EPRYLEVLG  148 (165)
T ss_pred             CEEEEECCHHHHCCCCCCCCC------CCCHHHHHHHHHHHCCCCCCEEEE--EECCCHHHHHHHHCC---CCCEEEECC
T ss_conf             289996484551444356444------577999999998415278864999--968037988577648---871899889


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             347889999999854
Q gi|254780545|r  318 PDIVGREHILMVHSR  332 (647)
Q Consensus       318 P~~~~r~~i~~~~~~  332 (647)
                      =+.+.+++.++.|..
T Consensus       149 Fs~~~~~~yi~~~F~  163 (165)
T pfam05729       149 FSEEDRKQYVRKYFS  163 (165)
T ss_pred             CCHHHHHHHHHHHCC
T ss_conf             999999999998679


No 239
>KOG0480 consensus
Probab=97.27  E-value=0.0011  Score=45.79  Aligned_cols=164  Identities=25%  Similarity=0.332  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             2569889852889999999998743356766420123331---1003787425888999974246997020585788644
Q gi|254780545|r  144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      .--|--|-|.+.+|.-+.  ...+-.-.|++.-| .+-||   |+++|-|||||+-+-||+++=+--. +++||..  +-
T Consensus       341 ~Sl~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg-~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGka--SS  414 (764)
T KOG0480         341 NSLFPSIYGHELVKAGIL--LSLFGGVHKSAGEG-TSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKA--SS  414 (764)
T ss_pred             HHHCCCCCCHHHHHHHHH--HHHHCCCCCCCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-EEECCCC--CC
T ss_conf             763762015389986689--99847854357898-654677318995799713889999986548731-5850763--44


Q ss_pred             HHHCCHHHHHHH--HH---HHHH---HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCCEE-
Q ss_conf             420332459999--99---9987---378012063235641445578988626889889989985303--23-577829-
Q gi|254780545|r  221 FVGVGASRVRDM--FE---QAKN---NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FE-SSEGVI-  288 (647)
Q Consensus       221 ~~g~g~~~vr~l--f~---~a~~---~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~-~~~~v~-  288 (647)
                      -.|.+++-|||=  ++   .|-+   .---|.-|||+|-..-            ++|+  .++.-|.-  .+ ...||+ 
T Consensus       415 aAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~------------~dqv--AihEAMEQQtISIaKAGv~a  480 (764)
T KOG0480         415 AAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV------------KDQV--AIHEAMEQQTISIAKAGVVA  480 (764)
T ss_pred             CCCCEEEEEECCCCCCEEEECCCEEECCCCEEEECHHCCCCH------------HHHH--HHHHHHHHHEEHHEECCEEE
T ss_conf             346468997637777335534737881696688310003570------------7689--99999875100033020688


Q ss_pred             -------EEEECCCC-------------CCCCHHHCCCCCCCC-EEEECHHHHHHHHHHHHH
Q ss_conf             -------99962981-------------008833316564231-410001347889999999
Q gi|254780545|r  289 -------LIAATNRP-------------DVLDAALLRPGRFDR-QITVPNPDIVGREHILMV  329 (647)
Q Consensus       289 -------vi~aTn~~-------------~~lD~al~RpgRfd~-~i~~~~P~~~~r~~i~~~  329 (647)
                             ||||+|-.             =.++++|+-  |||- -|.++-||...-..|-++
T Consensus       481 TLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~h  540 (764)
T KOG0480         481 TLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARH  540 (764)
T ss_pred             EECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHH--HHCEEEEEECCCCHHHHHHHHHH
T ss_conf             6222355555327767745533006652277804542--22279999357866777999999


No 240
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.26  E-value=0.001  Score=45.95  Aligned_cols=114  Identities=27%  Similarity=0.345  Sum_probs=57.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCC-----CCCCEECCC-----HHHHHHHHH---HC------C----HHHHHHHHHHHH
Q ss_conf             331100378742588899997424-----699702058-----578864442---03------3----245999999998
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGE-----ANVPFFTIS-----GSDFVELFV---GV------G----ASRVRDMFEQAK  237 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e-----~~~~f~~~~-----~s~~~~~~~---g~------g----~~~vr~lf~~a~  237 (647)
                      |+=|+|.||+|+|||..+--+|..     ..|-++++.     +.+-..-|.   |+      .    ++-+++..+.++
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~   80 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK   80 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96999989999988999999999999779928999758776889999999998639817814877787899999999988


Q ss_pred             HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf             737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp  306 (647)
                      ...--+||||-   -|+.       ..|+  .-+.+|-.-.+.....+-.+|+.||...+.+..+..+-
T Consensus        81 ~~~~D~IlIDT---aGr~-------~~d~--~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~  137 (196)
T pfam00448        81 AENYDVVLVDT---AGRL-------QNDK--NLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFN  137 (196)
T ss_pred             HCCCCEEEEEC---CCCC-------CCCH--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             46899999989---9987-------4767--78999999985228730289985677821378999876


No 241
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582    To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.25  E-value=0.00028  Score=49.99  Aligned_cols=58  Identities=24%  Similarity=0.431  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             69889852889999999998743356766420123331---100378742588899997424699702
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGEANVPFF  210 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e~~~~f~  210 (647)
                      +-.|+|=.   |..+.+|-.+|+-    .-|-..+-||   +|++||||||||..-|.+|.|.|..+.
T Consensus        87 ~~~~lAvH---K~Ki~~v~~wl~a----~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~  147 (670)
T TIGR00602        87 TQEELAVH---KKKIEEVEEWLKA----QVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQ  147 (670)
T ss_pred             CHHHHHHH---HHHHHHHHHHHHH----HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             24577664---7779999999752----0020456677537884175588447899999888644565


No 242
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.24  E-value=0.00093  Score=46.17  Aligned_cols=118  Identities=30%  Similarity=0.372  Sum_probs=63.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      ++|.||||+||+..|+-+|...+++.  +|..+++...+-.+..    +-+             ++-.+ ..+|. ..  
T Consensus         2 i~l~G~PGsGKgTqa~~La~~~~~~~--is~gdlLR~~~~~~t~----~g~-------------~i~~~-~~~G~-lv--   58 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLREEIASGTE----LGK-------------KAKEY-IDSGK-LV--   58 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE--ECHHHHHHHHHHCCCH----HHH-------------HHHHH-HHCCC-CC--
T ss_conf             89989999987999999999979846--7688999999974995----899-------------99999-98799-77--


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH------HCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             268898899899853032357782999962981008833------316564231410001347889999999
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA------LLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~a------l~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      .++  -+++-+...|.......|+|+=   ..|..++.|      +.+-++.+..|++..|+..-.+.++..
T Consensus        59 p~~--i~~~l~~~~l~~~~~~~g~ilD---GfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R  125 (194)
T cd01428          59 PDE--IVIKLLKERLKKPDCKKGFILD---GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGR  125 (194)
T ss_pred             CHH--HHHHHHHHHHHCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf             899--9999999998476543877874---797989999999999973998788999966899999999646


No 243
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.22  E-value=0.00035  Score=49.25  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             3331100378742588899997424699702058578864442033
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g  225 (647)
                      +++-|.|.|+||+|||.++|.+|...++||+-+.  +++|...|..
T Consensus         1 M~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D--~~Ie~~~g~s   44 (172)
T PRK03731          1 MTQPLFLVGPRGCGKTTVGMALAQALGYRFVDTD--LWLQSTLQMT   44 (172)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC
T ss_conf             9998899889999889999999998599979786--9999883989


No 244
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.17  E-value=0.0079  Score=39.46  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             268999999999------9987898888861368756523355899999999
Q gi|254780545|r  452 STTYVWMTSRLT------ILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLAR  497 (647)
Q Consensus       452 ~~tk~~l~~~i~------v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~  497 (647)
                      ......+..+|-      .++.|-+.|-+-+|..+.+   -.++.+|-++|.
T Consensus       539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~---~e~i~~A~~~ag  587 (709)
T COG2274         539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT---DEEIIEAAQLAG  587 (709)
T ss_pred             HCCHHHHHHHEEEECCCCHHHCCCHHHHHHCCCCCCC---HHHHHHHHHHHC
T ss_conf             6699999865468746653204739879746899999---799999999837


No 245
>KOG0477 consensus
Probab=97.15  E-value=0.0064  Score=40.10  Aligned_cols=138  Identities=25%  Similarity=0.376  Sum_probs=69.6

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCC-HHHHHHHHHHCCHHHHHH-----HHHHHHH---HCCHHEEHHHHHHHH
Q ss_conf             1100378742588899997424699702058-578864442033245999-----9999987---378012063235641
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS-GSDFVELFVGVGASRVRD-----MFEQAKN---NSPCIVFVDEIDAVG  253 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~-~s~~~~~~~g~g~~~vr~-----lf~~a~~---~~p~iifiDeida~~  253 (647)
                      .+||.|-|||||+-+-|-++.-+.-..|.+- |+    --||.+|.-.|+     ---.|-+   .-.-|..|||+|..-
T Consensus       484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA----SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn  559 (854)
T KOG0477         484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA----SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN  559 (854)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEEHHHHHC
T ss_conf             2898469982289999999862753168506775----433326887517865303651672897268537741211204


Q ss_pred             CCCCCCCCCCCHHHHH-HHH----HHHHHHCCCCCCCCEEEEEECCC--------------CCCCCHHHCCCCCCCCEEE
Q ss_conf             4455789886268898-899----89985303235778299996298--------------1008833316564231410
Q gi|254780545|r  254 RHRGIGLGGGNDEREQ-TLN----QLLVEMDGFESSEGVILIAATNR--------------PDVLDAALLRPGRFDRQIT  314 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~-~ln----~ll~~mdg~~~~~~v~vi~aTn~--------------~~~lD~al~RpgRfd~~i~  314 (647)
                      .+   ...+-|..-|| .+.    .+.+-+.+     .-.||||.|-              .+.-+|-|-   |||-...
T Consensus       560 dq---DRtSIHEAMEQQSISISKAGIVtsLqA-----rctvIAAanPigGRY~~s~tFaqNV~ltePIlS---RFDiLcV  628 (854)
T KOG0477         560 DQ---DRTSIHEAMEQQSISISKAGIVTSLQA-----RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS---RFDILCV  628 (854)
T ss_pred             CC---CCCHHHHHHHHCCHHHHHHHHHHHHHH-----HHHHHEECCCCCCCCCCCCCHHHCCCCCCCHHH---HCCEEEE
T ss_conf             01---101599998751201446668998875-----544300027777756875114330554444121---1132456


Q ss_pred             EC---HHHHHHH--HHHHHHHHCCCC
Q ss_conf             00---1347889--999999854887
Q gi|254780545|r  315 VP---NPDIVGR--EHILMVHSRNVP  335 (647)
Q Consensus       315 ~~---~P~~~~r--~~i~~~~~~~~~  335 (647)
                      |.   -|-..++  +-+..-|.+.-|
T Consensus       629 vkD~vd~~~De~lA~fVV~Sh~r~hp  654 (854)
T KOG0477         629 VKDTVDPVQDEKLAKFVVGSHVRHHP  654 (854)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             40355813678899999876740487


No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.13  E-value=0.0018  Score=44.02  Aligned_cols=72  Identities=24%  Similarity=0.362  Sum_probs=40.2

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH----HHHHHHHHCC-------------------HHHHHHH-HHHH
Q ss_conf             1003787425888999974246---9970205857----8864442033-------------------2459999-9999
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS----DFVELFVGVG-------------------ASRVRDM-FEQA  236 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s----~~~~~~~g~g-------------------~~~vr~l-f~~a  236 (647)
                      +|++||||+|||.|+.-+|..+   +...+++++-    +..+.+.+..                   ..+++.. ....
T Consensus         2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR   81 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89998999989999999999987639979999866644899999998622467130799935999769999999999999


Q ss_pred             HHHCCHHEEHHHHHHHHCC
Q ss_conf             8737801206323564144
Q gi|254780545|r  237 KNNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       237 ~~~~p~iifiDeida~~~~  255 (647)
                      ....|..++||.|-.+.+.
T Consensus        82 ~~~~~vliiiDSit~~~~a  100 (165)
T cd01120          82 ERGGDDLIILDELTRLVRA  100 (165)
T ss_pred             HCCCCEEEEEECHHHHHHH
T ss_conf             8699779999288998877


No 247
>PRK00625 shikimate kinase; Provisional
Probab=97.12  E-value=0.00053  Score=47.92  Aligned_cols=31  Identities=35%  Similarity=0.634  Sum_probs=28.7

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             1100378742588899997424699702058
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS  213 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~  213 (647)
                      -+.|.|+||+|||-++|++|...++||+-+.
T Consensus         2 nI~LIG~mGsGKStiGk~LA~~l~~~FvD~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf             2999899999889999999999399957749


No 248
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11  E-value=0.0013  Score=45.08  Aligned_cols=32  Identities=38%  Similarity=0.579  Sum_probs=24.1

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf             20123331--100378742588899997424699
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV  207 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~  207 (647)
                      +|+-+|+|  ..++||||||||.||--+|-.+..
T Consensus        12 L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~   45 (235)
T cd01123          12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQL   45 (235)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             0799647879999999998499999999999842


No 249
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317   Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.11  E-value=0.0009  Score=46.29  Aligned_cols=161  Identities=29%  Similarity=0.443  Sum_probs=89.3

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHH---HCCCCCCEECCCHHHHHH------HHHH-----CCHHHH-HHHHHH
Q ss_conf             6766420123331100378742588899997---424699702058578864------4420-----332459-999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAV---AGEANVPFFTISGSDFVE------LFVG-----VGASRV-RDMFEQ  235 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~---a~e~~~~f~~~~~s~~~~------~~~g-----~g~~~v-r~lf~~  235 (647)
                      |+-+++ |++-|=||+.|-=||||=|.|.-+   ...+.-||+++.|+.+-|      .|.-     -||++- +--|++
T Consensus        13 eqvS~l-A~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTGA~~rh~GRFER   91 (349)
T TIGR02974        13 EQVSRL-APLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTGAKKRHEGRFER   91 (349)
T ss_pred             HHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCEE
T ss_conf             987510-4678866886146746899998853324655488626610127825555665310010013030468898544


Q ss_pred             HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--H---HCCCCCC----CCEEEEEECCCCCCCCHHHCCC
Q ss_conf             98737801206323564144557898862688988998998--5---3032357----7829999629810088333165
Q gi|254780545|r  236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV--E---MDGFESS----EGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~--~---mdg~~~~----~~v~vi~aTn~~~~lD~al~Rp  306 (647)
                      |-.   =-+|+|||=.. +.       .-.|      -||=  |   .....++    -+|=+|||||- |.  |+|-+-
T Consensus        92 AdG---GTLFLDElAta-s~-------~VQE------KLLRViEYG~fERVGG~~~l~vDVRlvaATN~-DL--P~lA~~  151 (349)
T TIGR02974        92 ADG---GTLFLDELATA-SL-------AVQE------KLLRVIEYGEFERVGGSQTLKVDVRLVAATNA-DL--PALAAE  151 (349)
T ss_pred             CCC---CCCHHHHHHCC-CH-------HHHH------HHHHHHCCCCEEECCCCCEEEECCEEEECCCC-CH--HHHHHC
T ss_conf             368---87388887142-16-------7678------66120101303301786047735136762141-36--989865


Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-------------HHCCCHHHHHHH
Q ss_conf             642314100013478899999998548877732110245441-------------203798999999
Q gi|254780545|r  307 GRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARG-------------TPGFSGADLRNL  360 (647)
Q Consensus       307 gRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~-------------t~g~sgAdi~~~  360 (647)
                      |+|=       -|.=+|.+.==++|--...=++ |+-.||..             .+|||..-.+.|
T Consensus       152 G~FR-------aDLLDRLAFDVi~LPPLR~R~~-DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L  210 (349)
T TIGR02974       152 GRFR-------ADLLDRLAFDVITLPPLRERQE-DIMLLAEHFAIRMARELGLPLFPGFTPQAREQL  210 (349)
T ss_pred             CCCC-------CHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             8984-------0145544565507978888723-278999999999999707865511438999999


No 250
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.10  E-value=0.0017  Score=44.24  Aligned_cols=30  Identities=37%  Similarity=0.806  Sum_probs=24.7

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             110037874258889999742469970205
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      -+++.||||.|||.+|+.+|...++|-++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlst   31 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT   31 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf             799989999988999999999769978552


No 251
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.09  E-value=0.00068  Score=47.16  Aligned_cols=62  Identities=26%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECCCCCHHHHHHHHHHHCCCC-------CCEECCCH
Q ss_conf             698-8985288999999999874335676642012333110-037874258889999742469-------97020585
Q gi|254780545|r  146 TFK-DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL-LVGPPGTGKTLLARAVAGEAN-------VPFFTISG  214 (647)
Q Consensus       146 ~f~-dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~l-l~GppGtGKTlla~a~a~e~~-------~~f~~~~~  214 (647)
                      -|+ ++.|++++.   ..+|.|+|+    ...|...-|=|| |+||||+||+-|++.+-.-..       -+.+.+.+
T Consensus        48 ~F~d~~fG~e~~i---~~~V~~~k~----AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w  118 (361)
T smart00763       48 FFDHDFFGMEEAI---ERFVNYFKS----AAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             CHHHHHCCCHHHH---HHHHHHHHH----HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             1101311648999---999999999----9844671256999988998877999999999999862677685599983


No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09  E-value=0.003  Score=42.55  Aligned_cols=153  Identities=19%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHH----CC-CCCCEECCC-----HHHHHH---------HHHHCCHHH
Q ss_conf             35676642012333110037874258889-99974----24-699702058-----578864---------442033245
Q gi|254780545|r  169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVA----GE-ANVPFFTIS-----GSDFVE---------LFVGVGASR  228 (647)
Q Consensus       169 ~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a----~e-~~~~f~~~~-----~s~~~~---------~~~g~g~~~  228 (647)
                      .++-+...|-..+|-+.|+||.|.|||-. ||--|    .+ -.|-|+.+.     +-+-+.         .+|-..+..
T Consensus       211 ~~~~~~~~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~e  290 (432)
T PRK12724        211 DSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK  290 (432)
T ss_pred             CCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf             74011035777762999989999888999999999999974992799952665377999999999985994599518999


Q ss_pred             HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---CCEEEEEECCCCCCCCHHHCC
Q ss_conf             99999999873780120632356414455789886268898899899853032357---782999962981008833316
Q gi|254780545|r  229 VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS---EGVILIAATNRPDVLDAALLR  305 (647)
Q Consensus       229 vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~---~~v~vi~aTn~~~~lD~al~R  305 (647)
                      .++.+.+  ... -+||||-   -|+      +.-|.++   +.+|-..++.|..+   +..+|+.||...+.|...+-|
T Consensus       291 l~~al~~--~~~-DlILIDT---AGr------S~rd~~~---~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~  355 (432)
T PRK12724        291 FKETLAR--DGS-ELILIDT---AGY------SHRNLEQ---LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA  355 (432)
T ss_pred             HHHHHHH--CCC-CEEEEEC---CCC------CCCCHHH---HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf             9999985--699-9999929---998------9789999---99999999863667885179999788998999999998


Q ss_pred             CCCCC-CEEEECHHHHH-HHHHHHHHHHC-CCCC
Q ss_conf             56423-14100013478-89999999854-8877
Q gi|254780545|r  306 PGRFD-RQITVPNPDIV-GREHILMVHSR-NVPL  336 (647)
Q Consensus       306 pgRfd-~~i~~~~P~~~-~r~~i~~~~~~-~~~~  336 (647)
                      -++++ ..+-+-.-|.. .--.||.+..+ ++|+
T Consensus       356 f~~l~~~~lIfTKLDET~s~G~ilni~~~~~~Pi  389 (432)
T PRK12724        356 YESLNYRRILLTKLDEADFLGSFLELADTYSKSF  389 (432)
T ss_pred             HCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf             4269998499971227798669999999988986


No 253
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=97.08  E-value=0.0029  Score=42.66  Aligned_cols=123  Identities=28%  Similarity=0.481  Sum_probs=70.1

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHH----------HHHH-------
Q ss_conf             66420123331--10037874258889999742469----------9702058578864----------4420-------
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVE----------LFVG-------  223 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~----------~~~g-------  223 (647)
                      +..+-..+++|  +-+.||.|+|||.|++.++|...          .+.-..+-.++.+          .|-|       
T Consensus        18 L~~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiL   97 (173)
T cd03246          18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL   97 (173)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCC
T ss_conf             54769998599999999999980999999996666679998999999933289989842089990888367775899767


Q ss_pred             CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf             33245999999998737801206323564144557898862688988998998530323577829999629810088333
Q gi|254780545|r  224 VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAAL  303 (647)
Q Consensus       224 ~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al  303 (647)
                      -|-.|=|-..++|-...|.|+++||--+       +.   ..+.++.+.+.|.++-    ..|..+|-.|.+++.+.   
T Consensus        98 SGGQkQRvalARal~~~p~ililDEpts-------~L---D~~~e~~i~~~l~~l~----~~~~Tvi~vtH~~~~~~---  160 (173)
T cd03246          98 SGGQRQRLGLARALYGNPRILVLDEPNS-------HL---DVEGERALNQAIAALK----AAGATRIVIAHRPETLA---  160 (173)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHH---
T ss_conf             6999999999999827999999968766-------89---9899999999999786----48989999847999998---


Q ss_pred             CCCCCCCCEEEEC
Q ss_conf             1656423141000
Q gi|254780545|r  304 LRPGRFDRQITVP  316 (647)
Q Consensus       304 ~RpgRfd~~i~~~  316 (647)
                          +.||.+.+.
T Consensus       161 ----~aD~Iivl~  169 (173)
T cd03246         161 ----SADRILVLE  169 (173)
T ss_pred             ----HCCEEEEEE
T ss_conf             ----499999993


No 254
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.07  E-value=0.0053  Score=40.74  Aligned_cols=50  Identities=16%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHH------HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HHHHHCCC
Q ss_conf             689999999999------987898888861368756523355899999999--99862488
Q gi|254780545|r  453 TTYVWMTSRLTI------LMGGRVAEEFTFGEDNVTSGAMSDIEYATKLAR--VMVTQFGF  505 (647)
Q Consensus       453 ~tk~~l~~~i~v------~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~--~mV~~~GM  505 (647)
                      ++..++..+|.+      ++.|-+.|-+.++..+++   ..++.+|.++|.  .++.+.-|
T Consensus       532 ~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~~~~~---~~~i~~a~~~a~l~~~I~~lp~  589 (694)
T TIGR03375       532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD---DEEILRAAELAGVTEFVRRHPD  589 (694)
T ss_pred             CCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHCCC
T ss_conf             999999730213576771107469999841699999---9999999998197999971856


No 255
>PRK02496 adk adenylate kinase; Provisional
Probab=97.06  E-value=0.0027  Score=42.88  Aligned_cols=118  Identities=27%  Similarity=0.358  Sum_probs=57.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf             31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG  261 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~  261 (647)
                      +-++|.||||+||+..|+.+|...+++.  +|..+++...+-.+..       .+++...   ++|        +|. . 
T Consensus         2 ~riillG~PGSGKgTqa~~L~~~~~~~h--is~GdllR~~~~~~s~-------lg~~i~~---~i~--------~G~-l-   59 (185)
T PRK02496          2 ARLIFLGPPGAGKGTQAVVLAEHLQIPH--ISTGDILRQAITEQTP-------LGIKAQG---YVD--------SGE-L-   59 (185)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCEE--ECHHHHHHHHHHCCCH-------HHHHHHH---HHH--------CCC-C-
T ss_conf             1899979999998999999999969977--8888999999874998-------8999999---998--------799-6-


Q ss_pred             CCCHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCCCHH------HCCCC-CCCCEEEECHHHHHHHHHHHH
Q ss_conf             862688988998998-53032357782999962981008833------31656-423141000134788999999
Q gi|254780545|r  262 GGNDEREQTLNQLLV-EMDGFESSEGVILIAATNRPDVLDAA------LLRPG-RFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       262 ~~~~e~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~~~~lD~a------l~Rpg-Rfd~~i~~~~P~~~~r~~i~~  328 (647)
                      -. |   .++++|+. .|..-....|+++=   ..|-.++.|      +-..| ..|..|++..|+....+.+++
T Consensus        60 vp-d---~iv~~li~~~l~~~~~~~g~ilD---GfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~  127 (185)
T PRK02496         60 VP-D---QLVLGLVQERLQQPDAANGWILD---GFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLLA  127 (185)
T ss_pred             CC-C---HHHHHHHHHHHHCCCCCCCEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC
T ss_conf             77-2---88999999998484533877886---898857889999999997056730333304999999999874


No 256
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.06  E-value=0.00069  Score=47.13  Aligned_cols=51  Identities=29%  Similarity=0.552  Sum_probs=38.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             31100378742588899997424699702058578864442033245999999998
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~  237 (647)
                      +-+.|.|+||+|||-+.|++|...+.||+-+.  ..+|...|   ..|.++|++--
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~~G   53 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEEEG   53 (172)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCH--HHHHHHHC---CCHHHHHHHHH
T ss_conf             61899717999776899999998199802246--99999979---69999999982


No 257
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06  E-value=0.0013  Score=45.14  Aligned_cols=110  Identities=23%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC---C--CCEECCC-----HHHHHHHHH---------HCCHHH----HHHHHHHHHHHC
Q ss_conf             1003787425888999974246---9--9702058-----578864442---------033245----999999998737
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA---N--VPFFTIS-----GSDFVELFV---------GVGASR----VRDMFEQAKNNS  240 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~---~--~~f~~~~-----~s~~~~~~~---------g~g~~~----vr~lf~~a~~~~  240 (647)
                      ++|.||+|+|||...--+|...   +  +-++...     +-+-+.-|.         ...+..    +++..+.++...
T Consensus         3 i~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREEN   82 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99989999988999999999999769928999748875779999999999749859922775587999999999987568


Q ss_pred             CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC
Q ss_conf             80120632356414455789886268898899899853032357782999962981008833316
Q gi|254780545|r  241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR  305 (647)
Q Consensus       241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R  305 (647)
                      --+||||-   -|+.       .+|+  +-+.+|-.-.+.....+-.+|+.||...+.+|.|...
T Consensus        83 ~D~IlIDT---aGr~-------~~d~--~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f  135 (173)
T cd03115          83 FDVVIVDT---AGRL-------QIDE--NLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF  135 (173)
T ss_pred             CCEEEEEC---CCCC-------CCCH--HHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf             99899978---8878-------7999--9999999998644897215742465506589999998


No 258
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.06  E-value=0.0016  Score=44.47  Aligned_cols=51  Identities=35%  Similarity=0.661  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHC
Q ss_conf             9889852889999999998743356766420123331--10037874258889999742
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAG  203 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~  203 (647)
                      |+|..|.++     +|.|.- -.+..=..+|.-+|+|  +|+.||||||||.||.-++.
T Consensus         2 ~~~~~~~~~-----~e~i~t-Gi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~   54 (241)
T PRK06067          2 FSDLEGEEE-----KEIIST-GNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVW   54 (241)
T ss_pred             HHHHCCCCC-----CCCCCC-CCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             346365431-----452566-87557865069977990899980799887999999999


No 259
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113   This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.   In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=97.05  E-value=0.00034  Score=49.30  Aligned_cols=212  Identities=28%  Similarity=0.361  Sum_probs=116.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH
Q ss_conf             2422569889852889999999998743356766420123331100378742588899997424---6997020585788
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF  217 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~  217 (647)
                      ......-+-|.|--.+-   +++++-.+-       =++.-.-|||-|-+||||=|+||||-..   ++-||+.+++..+
T Consensus       205 ~~~~~~~~~i~G~Spam---~~v~~~~~~-------vA~~nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAAL  274 (574)
T TIGR01817       205 RRRSGKEDGIVGKSPAM---RQVVDQIKV-------VARSNSTVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAAL  274 (574)
T ss_pred             HHHCCCCCCCCCCCHHH---HHHHHHHHH-------HCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf             33123447401247899---999988652-------01317667850565744334442340466455788545006447


Q ss_pred             H------HHHHHC-----CHHHHHH-HHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHH--HHCCCC
Q ss_conf             6------444203-----3245999-999998737801206323564144557898862688988-998998--530323
Q gi|254780545|r  218 V------ELFVGV-----GASRVRD-MFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLV--EMDGFE  282 (647)
Q Consensus       218 ~------~~~~g~-----g~~~vr~-lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~--~mdg~~  282 (647)
                      -      |+|..+     ||-+-|. =|+.|-   -=-+|+|||=-|-+.            =|- |-=.|.  |+....
T Consensus       275 se~lLESELFGHEKGAFTGA~~~RkGRFElAd---GGTLFLDEIGEISPa------------FQAKLLRVLQEGEFERVG  339 (574)
T TIGR01817       275 SETLLESELFGHEKGAFTGAVAQRKGRFELAD---GGTLFLDEIGEISPA------------FQAKLLRVLQEGEFERVG  339 (574)
T ss_pred             CCCHHHHHHHCCCCHHHHHHHHHCCCCEEECC---CCCCCCCCCCCCCHH------------HHHHHHHHHHCCCEEEEC
T ss_conf             76112454513430146888751777533027---883200001467856------------888998875210025327


Q ss_pred             CCC----CEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HH---HHHHHCCCCCCCC---CCHHH
Q ss_conf             577----8299996298100883331656423-------14100013478899-99---9998548877732---11024
Q gi|254780545|r  283 SSE----GVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HI---LMVHSRNVPLAPN---VILKT  344 (647)
Q Consensus       283 ~~~----~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i---~~~~~~~~~~~~~---~d~~~  344 (647)
                      ++.    +|=|||||||  .|..|.-+ |-|=       ..+-+-+|=..+|. +|   -+..|++......   +.+..
T Consensus       340 G~~TlKVdVRlvaATNr--dLE~aV~~-GeFRaDLYYRinVvPl~lPPLRER~~DIP~LA~~fL~kf~~en~R~mL~~~~  416 (574)
T TIGR01817       340 GNRTLKVDVRLVAATNR--DLEEAVAK-GEFRADLYYRINVVPLILPPLRERREDIPLLAEAFLEKFNRENGRPMLTLSP  416 (574)
T ss_pred             CCEEEEEEEEEEECCCC--CHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECH
T ss_conf             87248873678861373--55889727-8973023554422234078777873116899999999876651872032267


Q ss_pred             HH--HH-HHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             54--41-203798--99999999987645532024210456899
Q gi|254780545|r  345 IA--RG-TPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       345 la--~~-t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      =|  .. .--|-|  -+|+|.+..+|.++.   ...|+.+||.=
T Consensus       417 ~Ai~~Lm~c~wPGNVRELENC~eRtAtLs~---~~~It~~df~c  457 (574)
T TIGR01817       417 SAIRVLMSCKWPGNVRELENCVERTATLSR---SGTITRSDFSC  457 (574)
T ss_pred             HHHHHHHCCCCCCCCEEHHHHHHHHHHHCC---CCCCCCCEEEE
T ss_conf             899897517899974004437877875416---88516423664


No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.04  E-value=0.0058  Score=40.43  Aligned_cols=117  Identities=25%  Similarity=0.407  Sum_probs=72.1

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHHHHHH------HH--------CCHHHHHHHHHHH
Q ss_conf             20123331--100378742588899997424---69970205857886444------20--------3324599999999
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFVELF------VG--------VGASRVRDMFEQA  236 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf~~a  236 (647)
                      +|+-+-.|  +||-|.||.||+-|.--+|..   .+.+.+++||-|=.+-.      .|        ..+..+.++++++
T Consensus        75 LGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i  154 (372)
T cd01121          75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI  154 (372)
T ss_pred             HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf             05773067179982599886889999999999863993899824567899998999858788772788435699999999


Q ss_pred             HHHCCHHEEHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             87378012063235641445578988-626889889989985303235778299996298
Q gi|254780545|r  237 KNNSPCIVFVDEIDAVGRHRGIGLGG-GNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       237 ~~~~p~iifiDeida~~~~r~~~~~~-~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      .+..|.++.||-|..+-...-.+..| -..-|+-+  +.|+++-- ..+-.+++||--+.
T Consensus       155 ~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca--~~L~~~AK-~~~i~~~lVGHVTK  211 (372)
T cd01121         155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT--AELMRFAK-ERNIPIFIVGHVTK  211 (372)
T ss_pred             HHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHH--HHHHHHHH-HCCCEEEEEEEECC
T ss_conf             97199889995622020377677998789999999--99999998-61973999987626


No 261
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome.  The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation.  To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes.  X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family.  The disease is characterized by a striking and unpredictable variation in phenotypic expression.  Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.03  E-value=0.0045  Score=41.23  Aligned_cols=119  Identities=34%  Similarity=0.535  Sum_probs=68.6

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-------------CEECC-----CHHHHHHH----HHH--CCH
Q ss_conf             66420123331--100378742588899997424699-------------70205-----85788644----420--332
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-------------PFFTI-----SGSDFVEL----FVG--VGA  226 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-------------~f~~~-----~~s~~~~~----~~g--~g~  226 (647)
                      +..+...+++|  +.+.||.|+|||.|.|+++|-...             .|+.-     .++ +.+.    |.-  -|-
T Consensus        17 l~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~t-l~e~l~~p~~~~LSGG   95 (166)
T cd03223          17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT-LREQLIYPWDDVLSGG   95 (166)
T ss_pred             EEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCC-HHHHHHCCCCCCCCHH
T ss_conf             944588988999999995899988999999869876998679976998799985646658875-9999636154678999


Q ss_pred             HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf             45999999998737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r  227 SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       227 ~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp  306 (647)
                      .|=|-.+.+|--..|-|+++||--+=       .   ..+.++.+.++|.++       +.-+|..|.+++.     ++ 
T Consensus        96 qkQRvalARal~~~p~iliLDEpTs~-------L---D~~~~~~l~~~l~~~-------~~Tvi~VtH~~~~-----~~-  152 (166)
T cd03223          96 EQQRLAFARLLLHKPKFVFLDEATSA-------L---DEESEDRLYQLLKEL-------GITVISVGHRPSL-----WK-  152 (166)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCC-------C---CHHHHHHHHHHHHHC-------CCEEEEEECCHHH-----HH-
T ss_conf             99999999999649999997585332-------8---999999999999977-------9989999434699-----97-


Q ss_pred             CCCCCEEEEC
Q ss_conf             6423141000
Q gi|254780545|r  307 GRFDRQITVP  316 (647)
Q Consensus       307 gRfd~~i~~~  316 (647)
                       .+||.+.++
T Consensus       153 -~aDrvl~Ld  161 (166)
T cd03223         153 -FHDRVLDLD  161 (166)
T ss_pred             -CCCEEEEEE
T ss_conf             -299999991


No 262
>PRK10536 hypothetical protein; Provisional
Probab=97.02  E-value=0.0012  Score=45.45  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             11003787425888999974246
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~  205 (647)
                      =+...||+|||||+||-|.|-++
T Consensus        76 ivf~~GpAGTGKT~lA~a~Al~~   98 (262)
T PRK10536         76 LIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             39998999875899999999999


No 263
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.98  E-value=0.0025  Score=43.08  Aligned_cols=35  Identities=37%  Similarity=0.576  Sum_probs=25.4

Q ss_pred             HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             642012333110--03787425888999974246997
Q gi|254780545|r  174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~  208 (647)
                      .-||+-+|+|.+  +|||||+|||-|+--+|-.+..|
T Consensus        34 ~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp   70 (261)
T pfam08423        34 KLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLP   70 (261)
T ss_pred             HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCH
T ss_conf             8737986677299998998887899999999994070


No 264
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function.  Barmotin belongs to the SMC protein family.  SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.96  E-value=0.0047  Score=41.10  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=8.9

Q ss_pred             CCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf             2981008833316564231410001
Q gi|254780545|r  293 TNRPDVLDAALLRPGRFDRQITVPN  317 (647)
Q Consensus       293 Tn~~~~lD~al~RpgRfd~~i~~~~  317 (647)
                      |.++..+.       ..||.|.|-+
T Consensus       173 TH~~~~i~-------~AD~Ii~v~m  190 (197)
T cd03278         173 THRKGTME-------AADRLYGVTM  190 (197)
T ss_pred             ECCHHHHH-------HCCEEEEEEE
T ss_conf             84999998-------5899999983


No 265
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.91  E-value=0.0018  Score=44.05  Aligned_cols=188  Identities=21%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHCCEEEEEEECC-EEEEEEECCCEEEEEEECCCCHHHHHHHH-----HCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             899999997099159999889-79999957980699982688279999999-----779828998568652189999999
Q gi|254780545|r   28 YSQFIKDVDAGRVRKISVIGT-HITGFYVNGESSFQTYMPLVGSKLLDKLQ-----SKDIEISSRPVNDGSPGLLSYLGS  101 (647)
Q Consensus        28 YSeFlk~Le~g~V~sV~I~~~-~i~~~~~~g~~~~~t~~p~~~~~l~~~L~-----e~~V~v~~~~~~~~s~~~~~iL~~  101 (647)
                      +.=...++++..|..|.|++. .+.+.+..+. ......+..+.+....+.     ..+.+++...+.....        
T Consensus        12 lgpl~~ll~D~~vsDI~In~~~~v~V~~r~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~d~~--------   82 (283)
T pfam00437        12 LIPLEALLDDPGASDIHVNPPGRVWVRFRVGG-IVLREIPDPSPAAAMRLISRIAVMAGLDISERRPPQDAR--------   82 (283)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEE--------
T ss_conf             62578985289987999957991899997797-899825779999999999999998299333327852577--------


Q ss_pred             HHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999998516--77887776766321000011242256988985288999999999874335676642012
Q gi|254780545|r  102 WFPLVLVVLVWMFLMRQIQ--GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGR  179 (647)
Q Consensus       102 ~LPliLli~i~~fl~rr~~--gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~  179 (647)
                       +|+   -+. .  + +..  ....+..+.+-       .......+++|.+-....-+   ++.+||+.+       .+
T Consensus        83 -l~~---~g~-R--~-~i~~~p~~~g~si~IR-------k~~~~~~tl~~L~~~g~~~~---~~~~~L~~~-------v~  137 (283)
T pfam00437        83 -LPL---GGE-R--F-RVSTPPVVAGEAFVIR-------KPSSRSLTLDDLGMTGAFDA---DIAEFLRQA-------VQ  137 (283)
T ss_pred             -ECC---CCE-E--E-EEEECCCCCCCEEEEE-------CCCCCCCCHHHHCCCCCCHH---HHHHHHHHH-------HH
T ss_conf             -256---883-7--9-9998752367458985-------06677899999738977859---999999999-------98


Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCC---CEECCC--------HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf             3331100378742588899997424699---702058--------57886444203324599999999873780120632
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANV---PFFTIS--------GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~---~f~~~~--------~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe  248 (647)
                      --+.+|..||+|+|||-+.+|+..+..-   .++.+-        +..-+++....+.--..++++.|-...|-+|+|.|
T Consensus       138 ~~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~~~~~v~l~~~~~~~t~~~ll~~~LR~~PD~IivGE  217 (283)
T pfam00437       138 ARGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNTRLAGVTFADLLRAALRQRPDRIMVGE  217 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECC
T ss_conf             19759998899998899999999840877762787337852317988789998558876999999996388999897578


Q ss_pred             H
Q ss_conf             3
Q gi|254780545|r  249 I  249 (647)
Q Consensus       249 i  249 (647)
                      +
T Consensus       218 i  218 (283)
T pfam00437       218 I  218 (283)
T ss_pred             C
T ss_conf             6


No 266
>PRK08118 topology modulation protein; Reviewed
Probab=96.91  E-value=0.00077  Score=46.78  Aligned_cols=101  Identities=22%  Similarity=0.320  Sum_probs=64.2

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf             31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG  261 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~  261 (647)
                      +-|+..|+||.|||.||++++...|+|++.+..     .|-.-|=.           ..                     
T Consensus         2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-----l~w~~~w~-----------~~---------------------   44 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-----LFWKPNWE-----------GV---------------------   44 (167)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-----EEECCCCC-----------CC---------------------
T ss_conf             679998899987999999999988969796443-----47668994-----------68---------------------


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             86268898899899853032357782999962981008833316564231410001347889999999854
Q gi|254780545|r  262 GGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       262 ~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                       ..+|-.+.+++++.       .+.=|+=|  |....+|.-+-   |-|-.|.+++|-..-...+++-.++
T Consensus        45 -~~~e~~~~~~~~~~-------~~~WIidG--ny~~~~~~r~~---~aD~iI~Ld~p~~~~~~r~~kR~~~  102 (167)
T PRK08118         45 -PKEEQRTVQNELVK-------EDEWIIDG--NYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQ  102 (167)
T ss_pred             -CHHHHHHHHHHHHH-------CCCEEEEC--CCHHHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             -88999999999983-------89879947--71779987797---6999999859899999999999999


No 267
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.91  E-value=0.0061  Score=40.25  Aligned_cols=287  Identities=16%  Similarity=0.174  Sum_probs=120.9

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHHHCCHHHH-HHH-----HHHHHH---HCCHHEEHHHHHHH
Q ss_conf             11003787425888999974246997-020585788644420332459-999-----999987---37801206323564
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFVGVGASRV-RDM-----FEQAKN---NSPCIVFVDEIDAV  252 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~g~g~~~v-r~l-----f~~a~~---~~p~iifiDeida~  252 (647)
                      .|||+|-|||+|+-|-+.++.=+--. |-+-.||+    -+|.+|.-+ |+-     .-+|-+   .---|.-|||+|-.
T Consensus       495 niLl~GDPgtaKSQlL~yv~~iaPRgvytsGkgsS----avGLTA~v~~~d~~tg~~~LEaGALVLaD~GvccIDEFDKM  570 (916)
T PTZ00111        495 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS----SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC  570 (916)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCC----CCCCEEEEEECCCCCCCEEEECCCEEECCCCEEEEEHHHCC
T ss_conf             59995799601899999999728742674598654----22646899832688786898548089727987996222036


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCE--------EEEEECCCC-----------C--CCCHHHCCCCCCC
Q ss_conf             144557898862688988998998530323-57782--------999962981-----------0--0883331656423
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGV--------ILIAATNRP-----------D--VLDAALLRPGRFD  310 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v--------~vi~aTn~~-----------~--~lD~al~RpgRfd  310 (647)
                      -           ++-...|.+-..+- -.+ ...|+        -|+||.|-.           +  .|.|.||-  |||
T Consensus       571 ~-----------~~~rs~lhEaMEQQ-tvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~enI~lpp~LLS--RFD  636 (916)
T PTZ00111        571 H-----------NESRLSLYEVMEQQ-TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD  636 (916)
T ss_pred             C-----------HHHHHHHHHHHHHH-HHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHH--HHH
T ss_conf             8-----------56788999988663-123532350454120345655328655657878676764579940331--220


Q ss_pred             CEEE-ECHHHHHHHHH----HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             1410-00134788999----999985488777321102454412037989999999998764553202421045689997
Q gi|254780545|r  311 RQIT-VPNPDIVGREH----ILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       311 ~~i~-~~~P~~~~r~~----i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~  385 (647)
                      -.+. ++.||.+.-+.    |.++++..--.+.. +      ....+....-.++-.+  +.....+...+..+ |...+
T Consensus       637 LIfl~lD~~de~~Dr~IA~hIa~~~L~~hl~g~~-~------~~~~~d~~~t~~i~~e--i~~~e~~~~vid~d-~LrKY  706 (916)
T PTZ00111        637 LIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGAN-D------AFDTYDRSNTMHVEPE--ILRSEKDYNLNDLD-MLRMY  706 (916)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC-C------CCCCCCCCCCCCCCCC--CCCCCCCCCCCCHH-HHHHH
T ss_conf             4677505786566689999998766543103543-3------3333355553335631--13311234547789-99999


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH--HCCCCC----CCCEEEEHHHHHHCCCHHHH
Q ss_conf             501368655676668667789999999999999850587-73234322--014555----64056400244322689999
Q gi|254780545|r  386 DKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKA-DPLHKATI--IPRGRA----LGMVMQLPEADRHSTTYVWM  458 (647)
Q Consensus       386 ~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~-~~v~kVTI--ipRg~a----lG~t~~~p~~d~~~~tk~~l  458 (647)
                        |.+-...-...++         -||.+.|+.+++.-- ...+.-++  ..+++.    -++... ........|-.+|
T Consensus       707 --IaYAR~~i~P~LS---------eEA~~~Lv~~YV~mRk~g~~~s~l~~~~~~~ed~d~d~~~~~-s~~k~I~iTtRQL  774 (916)
T PTZ00111        707 --IKFSKLHCFPKLS---------DEAKKVITREYVKMRQGNFQTSNLDELDHAQEDDDDDLYYQS-SGTRMIYVSSRMI  774 (916)
T ss_pred             --HHHHHHCCCCCCC---------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEHHHH
T ss_conf             --9999854799889---------999999999999986034545542222222333333311135-6775020018999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf             9999999878988888613687565233558999999999986248887667334047
Q gi|254780545|r  459 TSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEE  516 (647)
Q Consensus       459 ~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~  516 (647)
                      ++-|...=|   --++-+- +.+|   ..|-++|.+|-+....++++...-|.+.+..
T Consensus       775 ESLIRLSEA---~ARMRLS-e~Vt---~eDaeEAIRLmK~Al~q~a~DP~TG~IDmD~  825 (916)
T PTZ00111        775 SSIIRIAVS---LARMRLS-TFVT---KADALQAVQIVKSSTFQSLVDPTTGKIDFDQ  825 (916)
T ss_pred             HHHHHHHHH---HHHHHCC-CCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf             999999998---7652166-7567---8999999999999999853698888343788


No 268
>PRK04328 hypothetical protein; Provisional
Probab=96.91  E-value=0.00078  Score=46.73  Aligned_cols=29  Identities=45%  Similarity=0.724  Sum_probs=22.5

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             20123331--100378742588899997424
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      +++-+|+|  +|+.||||||||.||--++.+
T Consensus        17 L~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~   47 (250)
T PRK04328         17 LYGGIPERNVVLLSGGPGTGKSIFSQQFLWN   47 (250)
T ss_pred             CCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             1599879969999828999989999999999


No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91  E-value=0.011  Score=38.45  Aligned_cols=169  Identities=16%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCH-----HHHHHHHH---HC---CHHHHHHHHHHHHHH
Q ss_conf             33311003787425888999974246---------997020585-----78864442---03---324599999999873
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISG-----SDFVELFV---GV---GASRVRDMFEQAKNN  239 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~-----s~~~~~~~---g~---g~~~vr~lf~~a~~~  239 (647)
                      -||=+.|+||.|.|||...--+|...         +|-|+.+.-     -+-+..|.   |+   .+....++-....+.
T Consensus       173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~  252 (388)
T PRK12723        173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf             76289998998875787999999999986267677379998078758899999999999788069857889999999972


Q ss_pred             -CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCCHHHCCCCC--CCCEEEE
Q ss_conf             -780120632356414455789886268898899899853032357-782999962981008833316564--2314100
Q gi|254780545|r  240 -SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPDVLDAALLRPGR--FDRQITV  315 (647)
Q Consensus       240 -~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~  315 (647)
                       .--+||||-   -|+      ...+.+   -+++|-.-++-...+ +-.+|+.||.....+..++-|-..  ++..| +
T Consensus       253 ~~~D~IlIDT---AGr------s~~d~~---~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I-~  319 (388)
T PRK12723        253 KDFDLVLIDT---IGK------SPKDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVI-F  319 (388)
T ss_pred             CCCCEEEEEC---CCC------CCCCHH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEE-E
T ss_conf             4999999958---998------856899---99999999974189845999987989999999999984279998499-9


Q ss_pred             CHHHHHHH-HHHHHHHH-CCCCCC---------CCC---CHHHHHHHHHCCCHHHHHHHH
Q ss_conf             01347889-99999985-488777---------321---102454412037989999999
Q gi|254780545|r  316 PNPDIVGR-EHILMVHS-RNVPLA---------PNV---ILKTIARGTPGFSGADLRNLV  361 (647)
Q Consensus       316 ~~P~~~~r-~~i~~~~~-~~~~~~---------~~~---d~~~la~~t~g~sgAdi~~~~  361 (647)
                      -.-|...+ -.+|.+-. .++|++         +|+   |-+.++++.-||+-.|.+..+
T Consensus       320 TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~  379 (388)
T PRK12723        320 TKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFI  379 (388)
T ss_pred             EECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf             832278986699999999888869993899683020338999999998487145469999


No 270
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.90  E-value=0.0076  Score=39.58  Aligned_cols=118  Identities=25%  Similarity=0.409  Sum_probs=71.9

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCC--CCCCEECCCHHHHHHHH------HH--------CCHHHHHHHHHHH
Q ss_conf             420123331--100378742588899997424--69970205857886444------20--------3324599999999
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGE--ANVPFFTISGSDFVELF------VG--------VGASRVRDMFEQA  236 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e--~~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf~~a  236 (647)
                      -+|+-+-.|  +||-|.||.||+.|.--+|+.  .+-+.+++||-|=.+-.      .|        ..+..+.++.+.+
T Consensus        82 VLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i  161 (454)
T PRK11823         82 VLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATI  161 (454)
T ss_pred             CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf             21587206648995079988899999999999855995799815015789999999758888873788536899999999


Q ss_pred             HHHCCHHEEHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             87378012063235641445578988-626889889989985303235778299996298
Q gi|254780545|r  237 KNNSPCIVFVDEIDAVGRHRGIGLGG-GNDEREQTLNQLLVEMDGFESSEGVILIAATNR  295 (647)
Q Consensus       237 ~~~~p~iifiDeida~~~~r~~~~~~-~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~  295 (647)
                      .+..|.++.||-|..+-...-.+.-| -..-|+-+  +.|..+-- ..+--+++||--+.
T Consensus       162 ~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a--~~L~~~AK-~~~i~~~lVGHVTK  218 (454)
T PRK11823        162 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECA--AELTRLAK-QSGIAVFLVGHVTK  218 (454)
T ss_pred             HHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHH--HHHHHHHH-HCCCCEEEEEEECC
T ss_conf             86099889994311154156677899789999999--99999997-44982899997726


No 271
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport.  These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2).  No known transmembrane proteins or domains are associated with these proteins.
Probab=96.88  E-value=0.0015  Score=44.70  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC-------CCEECCC----HHH---HHHHHHH--CCHH---HHHH
Q ss_conf             66420123331--10037874258889999742469-------9702058----578---8644420--3324---5999
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN-------VPFFTIS----GSD---FVELFVG--VGAS---RVRD  231 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~-------~~f~~~~----~s~---~~~~~~g--~g~~---~vr~  231 (647)
                      |..-...+..|  .++.||.|.|||.+-|+++--+.       +|....+    +..   +.....+  -|.+   +++.
T Consensus        11 ~vpndi~l~~g~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgg~~~~~~l~~   90 (162)
T cd03227          11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALAL   90 (162)
T ss_pred             EECCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             50770260898689998998775799999999999986326775255542776402305766412000542999999999


Q ss_pred             HHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf             99999873780120632356414455789886268898899899853032357782999962981008833
Q gi|254780545|r  232 MFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA  302 (647)
Q Consensus       232 lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~a  302 (647)
                      ++..+..+.|+++++||+.+     |.+    ..++. .+.+.+.+.  +.  .+..+|.+|..++.-.-|
T Consensus        91 ~l~~~~~~~~~lillDE~~~-----Gtd----~~~~~-~l~~~i~~~--~~--~~~~~i~tTH~~eL~~la  147 (162)
T cd03227          91 ILALASLKPRPLYILDEIDR-----GLD----PRDGQ-ALAEAILEH--LV--KGAQVIVITHLPELAELA  147 (162)
T ss_pred             HHHHCCCCCCCEEEECCCCC-----CCC----HHHHH-HHHHHHHHH--HH--CCCEEEEECCHHHHHHHH
T ss_conf             99854248984899636557-----999----88999-999999999--97--699899979739999998


No 272
>KOG2170 consensus
Probab=96.87  E-value=0.007  Score=39.83  Aligned_cols=94  Identities=24%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---
Q ss_conf             985288999999-9998743356766420123331100378742588899997424699702058578864442033---
Q gi|254780545|r  150 VAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG---  225 (647)
Q Consensus       150 v~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g---  225 (647)
                      +.|+.-+++.+- -+-.|+.+|.      -+-|--+=|+|+|||||..-|+-+|...   |-.-.-|.||.+|++.-   
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~---~~~Gl~S~~V~~fvat~hFP  154 (344)
T KOG2170          84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENL---YRGGLRSPFVHHFVATLHFP  154 (344)
T ss_pred             HHCHHHHHHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCCHHHHHHHHHHHH---HHCCCCCHHHHHHHHHCCCC
T ss_conf             63208799999999999862899------9987589830899875648999999998---75112562688765541599


Q ss_pred             -HHHHH--------HHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             -24599--------9999998737801206323564
Q gi|254780545|r  226 -ASRVR--------DMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       226 -~~~vr--------~lf~~a~~~~p~iifiDeida~  252 (647)
                       ++.|.        .+=..+++-.-+|..+||.|-+
T Consensus       155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm  190 (344)
T KOG2170         155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL  190 (344)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHC
T ss_conf             767899999999999999998557754873105435


No 273
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776    This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=96.86  E-value=0.021  Score=36.34  Aligned_cols=189  Identities=29%  Similarity=0.380  Sum_probs=115.7

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCE-----E-C--------------------------------CCHHHHHHHHHH
Q ss_conf             3110037874258889999742469970-----2-0--------------------------------585788644420
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPF-----F-T--------------------------------ISGSDFVELFVG  223 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f-----~-~--------------------------------~~~s~~~~~~~g  223 (647)
                      .||-+-|--|||||-||+|++.-.-.+-     + +                                +.-+.|+++=+|
T Consensus        18 gGv~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~~   97 (705)
T TIGR02031        18 GGVAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPLG   97 (705)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCC
T ss_conf             54554167773889999999985888743266201478888873234456542332047766622046505641025898


Q ss_pred             CCHHHHH------------------HHHHHHHHHCC-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC-
Q ss_conf             3324599------------------99999987378-01206323564144557898862688988998998530-323-
Q gi|254780545|r  224 VGASRVR------------------DMFEQAKNNSP-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFE-  282 (647)
Q Consensus       224 ~g~~~vr------------------~lf~~a~~~~p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~-  282 (647)
                      +++-|+-                  -||..|    | +++++|++.=+.              +++.|.|+.-|| |.. 
T Consensus        98 vtedrL~G~iDve~sl~~G~~V~~~GlL~~A----~~gvlyvd~~~lld--------------~~~~n~l~~AL~~G~~~  159 (705)
T TIGR02031        98 VTEDRLLGGIDVEESLASGQRVLQPGLLDEA----NRGVLYVDSLNLLD--------------DSLVNRLLDALDEGVVI  159 (705)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCHHHC----CCCCEECCCHHHHH--------------HHHHHHHHHHHHCCCEE
T ss_conf             7320302640020146878254407603116----89704315454110--------------68999999886549768


Q ss_pred             -CCCC-------EEEEEECCCCCCCCHHH----CCCCCCCCEEEECHH-HHHHHHHHHHHH--HCCCCC--CCCCCHH--
Q ss_conf             -5778-------29999629810088333----165642314100013-478899999998--548877--7321102--
Q gi|254780545|r  283 -SSEG-------VILIAATNRPDVLDAAL----LRPGRFDRQITVPNP-DIVGREHILMVH--SRNVPL--APNVILK--  343 (647)
Q Consensus       283 -~~~~-------v~vi~aTn~~~~lD~al----~RpgRfd~~i~~~~P-~~~~r~~i~~~~--~~~~~~--~~~~d~~--  343 (647)
                       .++|       -+++=||-.|+--|++|    +=  |+--+|....+ +.+.|.+|.+..  ....+-  ..++|=+  
T Consensus       160 vEREGiS~~~Pa~f~Liatydp~E~~~~lr~~L~D--Rla~~v~~~~~~~~~~R~~iv~~~~~F~~~~~~~~~~~~~e~~  237 (705)
T TIGR02031       160 VEREGISVVHPAKFVLIATYDPAEGDGALREHLLD--RLALIVSLEEVASLEARVEIVRRAELFSELQEEVFEEVNDELL  237 (705)
T ss_pred             EEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH--HHHHEECCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHH
T ss_conf             88656563047673036631777787766204540--3441105110257888999988998887506632011576245


Q ss_pred             ----HH--HHH---HHCCCHHHHHHHH------------------HHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             ----45--441---2037989999999------------------99876455320242104568999750136
Q gi|254780545|r  344 ----TI--ARG---TPGFSGADLRNLV------------------NEAALMAARRNRRLVTMQEFEDAKDKILM  390 (647)
Q Consensus       344 ----~l--a~~---t~g~sgAdi~~~~------------------~eAa~~a~r~~~~~i~~~dl~~A~~rv~~  390 (647)
                          .|  ||.   -.-+|-..+..|+                  +-|-.+||-++|+.|+.+||..|+.=|+.
T Consensus       238 ~~~~~ie~ARe~L~~V~is~eq~~~lv~~a~~lGv~g~RAdLfa~raA~a~AAl~gR~~V~~eDL~~AV~LV~~  311 (705)
T TIGR02031       238 LLRGQIEAARELLPQVTISAEQVKELVLTALSLGVEGHRADLFAVRAAKALAALEGRTEVEEEDLKLAVELVLL  311 (705)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             78999999998567873648999999999997388730178999999999999870724588899988772125


No 274
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.84  E-value=0.0047  Score=41.12  Aligned_cols=31  Identities=32%  Similarity=0.597  Sum_probs=24.3

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +-..+++|  +-+.||.|||||.|.++++|-..
T Consensus        20 vsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~   52 (255)
T PRK11248         20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             177986998999999998469999999975998


No 275
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.83  E-value=0.0033  Score=42.22  Aligned_cols=35  Identities=31%  Similarity=0.543  Sum_probs=27.4

Q ss_pred             HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             642012333110--03787425888999974246997
Q gi|254780545|r  174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~  208 (647)
                      .-||+-+|.|-+  +|||||||||-|+--+|-.+..|
T Consensus        94 ~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp  130 (318)
T PRK04301         94 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLP  130 (318)
T ss_pred             HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECC
T ss_conf             0547983367078886688787035667767653376


No 276
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.83  E-value=0.0032  Score=42.34  Aligned_cols=44  Identities=30%  Similarity=0.486  Sum_probs=35.1

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf             3331100378742588899997424699702058578864442033
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g  225 (647)
                      -.+.|-|.|.+|+|||-+.|.+|...++||+-++  ..+|...|..
T Consensus       132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD--~~IEk~aG~s  175 (304)
T PRK08154        132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELN--REIEREAGLS  175 (304)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCCC
T ss_conf             7784798899999888999999999598977877--9999992999


No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82  E-value=0.0074  Score=39.68  Aligned_cols=122  Identities=25%  Similarity=0.362  Sum_probs=66.3

Q ss_pred             HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC----------CEECCCHHHHHHH----------H--------
Q ss_conf             766420123331--100378742588899997424699----------7020585788644----------4--------
Q gi|254780545|r  172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV----------PFFTISGSDFVEL----------F--------  221 (647)
Q Consensus       172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~----------~f~~~~~s~~~~~----------~--------  221 (647)
                      -+..+-..+++|  +.+.||.|+|||.|.++++|-...          +.-..+..++...          |        
T Consensus        17 iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi   96 (171)
T cd03228          17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI   96 (171)
T ss_pred             CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC
T ss_conf             16771899859989999999998399999999767758974899999998859989986318999666843757799977


Q ss_pred             HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf             20332459999999987378012063235641445578988626889889989985303235778299996298100883
Q gi|254780545|r  222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA  301 (647)
Q Consensus       222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~  301 (647)
                      .--|. +=|=....|--..|.|+.+||--+       +.   ....++.+.++|.++-   .  +..+|-.|.+++.+  
T Consensus        97 LSgGq-~Qri~lARal~~~p~illlDEpts-------~L---D~~~~~~i~~~l~~~~---~--~~Tvi~vtH~~~~~--  158 (171)
T cd03228          97 LSGGQ-RQRIAIARALLRDPPILILDEATS-------AL---DPETEALILEALRALA---K--GKTVIVIAHRLSTI--  158 (171)
T ss_pred             CCHHH-HHHHHHHHHHHHCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHHC---C--CCEEEEEECCHHHH--
T ss_conf             44889-999999999974899899957766-------79---9899999999999980---9--99899995799999--


Q ss_pred             HHCCCCCCCCEEEEC
Q ss_conf             331656423141000
Q gi|254780545|r  302 ALLRPGRFDRQITVP  316 (647)
Q Consensus       302 al~RpgRfd~~i~~~  316 (647)
                         +  .+||.+.+.
T Consensus       159 ---~--~~D~v~~l~  168 (171)
T cd03228         159 ---R--DADRIIVLD  168 (171)
T ss_pred             ---H--HCCEEEEEE
T ss_conf             ---7--099999981


No 278
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79  E-value=0.0026  Score=42.94  Aligned_cols=113  Identities=19%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHC-------CCCCCEECCC-----HHHHHHHH---HH------CCHHHHHHHHHHHHHH
Q ss_conf             33110037874258889999742-------4699702058-----57886444---20------3324599999999873
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAG-------EANVPFFTIS-----GSDFVELF---VG------VGASRVRDMFEQAKNN  239 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~-------e~~~~f~~~~-----~s~~~~~~---~g------~g~~~vr~lf~~a~~~  239 (647)
                      .|=+.|+||+|+|||...=-+|.       ...|-++.+.     +-+-...|   .|      ..+..++++.   ++.
T Consensus       210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al---~~~  286 (412)
T PRK05703        210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKAL---EQL  286 (412)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---HHH
T ss_conf             73699988888756769999999999972998179998376777799999999997197379847999999999---871


Q ss_pred             CC-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC
Q ss_conf             78-0120632356414455789886268898899899853032357782999962981008833316564
Q gi|254780545|r  240 SP-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR  308 (647)
Q Consensus       240 ~p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR  308 (647)
                      +. -+||||-   -|+      . ..|.  +-+.||-..++....-+-.+|+.||-..+.+...+-|-++
T Consensus       287 ~~~dlILIDT---aG~------s-~~d~--~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~  344 (412)
T PRK05703        287 ANCDLILIDT---AGR------S-QRDP--RLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSR  344 (412)
T ss_pred             CCCCEEEEEC---CCC------C-CCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             5899799968---988------9-7899--9999999998624887189997598998999999998467


No 279
>pfam00406 ADK Adenylate kinase.
Probab=96.79  E-value=0.0025  Score=43.04  Aligned_cols=112  Identities=23%  Similarity=0.360  Sum_probs=60.0

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf             0378742588899997424699702058578864442033---2459999999987378012063235641445578988
Q gi|254780545|r  186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG---ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG  262 (647)
Q Consensus       186 l~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g---~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~  262 (647)
                      |.||||+||+..|+.+|...+++.+++  .+++...+-.+   ..+++++.+.- +..|                     
T Consensus         1 i~G~PGsGKgTqa~~La~~~~~~~is~--GdllR~~~~~~s~~g~~i~~~i~~G-~lvp---------------------   56 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKYGIVHLST--GDLLRAEVKSGTELGKEAKEYMDKG-ELVP---------------------   56 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHHHHCCCHHHHHHHHHHHCC-CCCC---------------------
T ss_conf             918898985999999999859906769--9999999862887999999999869-9543---------------------


Q ss_pred             CCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCCHH------HCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             626889889989985-3032357782999962981008833------316564231410001347889999999
Q gi|254780545|r  263 GNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLDAA------LLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       263 ~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD~a------l~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                        |   -++++++.+ |..-....|+|+=   ..|-.++.|      +..-...|..|++..|+..-.+.++.-
T Consensus        57 --d---~i~~~l~~~~l~~~~~~~g~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R  122 (186)
T pfam00406        57 --D---EVVVGLVKERLEQNDCKNGFLLD---GFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGR  122 (186)
T ss_pred             --H---HHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf             --0---99999999997074554866873---798989999999999974998777999973789999999766


No 280
>PRK13808 adenylate kinase; Provisional
Probab=96.78  E-value=0.0039  Score=41.64  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=26.8

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             110037874258889999742469970205
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      -++|.||||+||.--|+-++.+.++|-+|+
T Consensus         2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIST   31 (297)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST   31 (297)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf             599978999985899999999869886758


No 281
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.78  E-value=0.0018  Score=44.19  Aligned_cols=38  Identities=24%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH
Q ss_conf             1003787425888999974246997020585788644420
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG  223 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g  223 (647)
                      |.|.|+||+|||-..|.+|...++||+-..  +.+|.-.|
T Consensus         3 I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D--~~Ie~~~G   40 (488)
T PRK13951          3 IFLVGMMGSGKSTIGKRISEVLDLQFIDMD--EEIERREG   40 (488)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHC
T ss_conf             999899999877999999998397956477--99999859


No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.76  E-value=0.0096  Score=38.85  Aligned_cols=31  Identities=35%  Similarity=0.622  Sum_probs=20.5

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...+++|  +.+.||.|||||-|.++++|-..
T Consensus        23 isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~   55 (218)
T cd03255          23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             289986998999999999869999999966999


No 283
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.75  E-value=0.0041  Score=41.55  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=24.1

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6420123331--10037874258889999742469
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+...+|+|  +.+.||.|+|||.|.+++-...+
T Consensus        12 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~   46 (176)
T cd03238          12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASG   46 (176)
T ss_pred             CCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             75487888998999999999989999998887610


No 284
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.74  E-value=0.00085  Score=46.45  Aligned_cols=30  Identities=27%  Similarity=0.597  Sum_probs=26.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             100378742588899997424699702058
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTIS  213 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~  213 (647)
                      +++.|++|||||.+|+++|.+.|++|+.-.
T Consensus         2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D   31 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD   31 (150)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             899918999999999999997199564154


No 285
>PRK03839 putative kinase; Provisional
Probab=96.72  E-value=0.00066  Score=47.27  Aligned_cols=30  Identities=23%  Similarity=0.584  Sum_probs=26.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             100378742588899997424699702058
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTIS  213 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~  213 (647)
                      +++.|.||||||.+|+.+|...|..+++++
T Consensus         3 I~ITGTPGtGKTTva~~La~~lg~~~i~v~   32 (180)
T PRK03839          3 IAITGTPGVGKTTISKLLAEKLGYEYVNLR   32 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEEEHH
T ss_conf             999789999989999999997698798799


No 286
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.70  E-value=0.021  Score=36.44  Aligned_cols=33  Identities=36%  Similarity=0.569  Sum_probs=24.9

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6420123331--10037874258889999742469
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+..++.+|  +-+.||.|+|||.|.|+++|-..
T Consensus        17 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   51 (201)
T cd03231          17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             ECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             53078887995999999999999999999966778


No 287
>KOG3347 consensus
Probab=96.70  E-value=0.0008  Score=46.67  Aligned_cols=35  Identities=40%  Similarity=0.733  Sum_probs=30.4

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             3110037874258889999742469970205857886
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      -.||+.|-||||||.||.++|...+.+++.+|  +++
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is--d~v   42 (176)
T KOG3347           8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLV   42 (176)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCEEEHH--HHH
T ss_conf             88798679998802599999997398567455--677


No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.68  E-value=0.025  Score=35.83  Aligned_cols=31  Identities=42%  Similarity=0.647  Sum_probs=22.8

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +..++.+|  +.|.||.|||||-|.|+++|-..
T Consensus        21 vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~   53 (206)
T PRK13539         21 LSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLP   53 (206)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             078986994999989999989999999958878


No 289
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.65  E-value=0.0011  Score=45.80  Aligned_cols=36  Identities=28%  Similarity=0.546  Sum_probs=30.9

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             33110037874258889999742469970205857886
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      +|-+++.|+.|||||.+++++|.+.++||+-  |-+|.
T Consensus         3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fie--gDd~H   38 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFID--GDDLH   38 (176)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEC--CCCCC
T ss_conf             8579998289899899999999995987762--34437


No 290
>cd00983 recA RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.64  E-value=0.0047  Score=41.06  Aligned_cols=27  Identities=41%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             123331--100378742588899997424
Q gi|254780545|r  178 GRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       178 ~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      .-+|+|  +-++|||++|||.||-.+..+
T Consensus        50 GGiP~GRivei~G~essGKTtlal~~ia~   78 (325)
T cd00983          50 GGYPKGRIIEIYGPESSGKTTLALHAIAE   78 (325)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             99668808999889877799999999999


No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.64  E-value=0.015  Score=37.39  Aligned_cols=30  Identities=33%  Similarity=0.470  Sum_probs=19.9

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +...+++|  +.+.||+|||||-|-+.++|-.
T Consensus        17 vsl~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~   48 (206)
T TIGR03608        17 LNLTIEKGKMVAIVGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             07798699899998799970999999997599


No 292
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.64  E-value=0.015  Score=37.49  Aligned_cols=223  Identities=26%  Similarity=0.299  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHHHCC-------------
Q ss_conf             42256988985288999999999874335676642012333110037----8742588899997424-------------
Q gi|254780545|r  142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVG----PPGTGKTLLARAVAGE-------------  204 (647)
Q Consensus       142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~G----ppGtGKTlla~a~a~e-------------  204 (647)
                      ...-.|++..|++..+....-  .++.    +...=..++..+.+++    ++|.+++..++-+-.+             
T Consensus        98 ~~~~~~~~~~~~k~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~  171 (647)
T COG1067          98 GRPESFSELLGQKAEEKAEYL--SYLI----LLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPK  171 (647)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             687225799985636788777--7666----8876224666665404553462167789988887653125310333045


Q ss_pred             --------CCCCEECCCHHHHHHHHH------HCC------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf             --------699702058578864442------033------245999999998737801206323564144557898862
Q gi|254780545|r  205 --------ANVPFFTISGSDFVELFV------GVG------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN  264 (647)
Q Consensus       205 --------~~~~f~~~~~s~~~~~~~------g~g------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~  264 (647)
                              -+.||++.++..--+++.      ..|      -.|++- =.--++|. -++||||++-++..         
T Consensus       172 ~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~p-GaVHkAng-GVLiIdei~lL~~~---------  240 (647)
T COG1067         172 NFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKP-GAVHKANG-GVLIIDEIGLLAQP---------  240 (647)
T ss_pred             HHHHCCCCCCCCEEECCCCCHHHCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCC-CEEEEEHHHHHCCH---------
T ss_conf             56540235589679668777465361277768887667888642367-61101258-47999756632839---------


Q ss_pred             HHHHHHHHHHHHHHC-C-------CCCC-----------CCEEEEEECCCCCC-----CCHHHCCCCCCCC--EEEECHH
Q ss_conf             688988998998530-3-------2357-----------78299996298100-----8833316564231--4100013
Q gi|254780545|r  265 DEREQTLNQLLVEMD-G-------FESS-----------EGVILIAATNRPDV-----LDAALLRPGRFDR--QITVPNP  318 (647)
Q Consensus       265 ~e~~~~ln~ll~~md-g-------~~~~-----------~~v~vi~aTn~~~~-----lD~al~RpgRfd~--~i~~~~P  318 (647)
                           ..+-+|+.|- .       .+.+           -...+|.+-|+-+.     +|+-++.  -|..  .+.-.+|
T Consensus       241 -----~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~  313 (647)
T COG1067         241 -----LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMP  313 (647)
T ss_pred             -----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHH--HCCEEEEECCCCC
T ss_conf             -----899999999824456657674024861578885565489940889999765534777884--0556899768889


Q ss_pred             -HHHHHHHHHHHHHCCCCCC---CCCC------HHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             -4788999999985488777---3211------0245441203------7989999999998764553202421045689
Q gi|254780545|r  319 -DIVGREHILMVHSRNVPLA---PNVI------LKTIARGTPG------FSGADLRNLVNEAALMAARRNRRLVTMQEFE  382 (647)
Q Consensus       319 -~~~~r~~i~~~~~~~~~~~---~~~d------~~~la~~t~g------~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~  382 (647)
                       ..+.|...+..+.+-+..+   +.++      +-+.|.+..|      .++.||.+++.+|+..|..++++.|+.+|++
T Consensus       314 ~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve  393 (647)
T COG1067         314 ITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVE  393 (647)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             98689999999999999862899988889999999999986165650214899999999986688853786647699999


Q ss_pred             HHHHHC
Q ss_conf             997501
Q gi|254780545|r  383 DAKDKI  388 (647)
Q Consensus       383 ~A~~rv  388 (647)
                      +|+.+-
T Consensus       394 ~a~~~~  399 (647)
T COG1067         394 EALQKR  399 (647)
T ss_pred             HHHHHH
T ss_conf             999874


No 293
>PRK09354 recA recombinase A; Provisional
Probab=96.64  E-value=0.0045  Score=41.25  Aligned_cols=29  Identities=48%  Similarity=0.799  Sum_probs=23.0

Q ss_pred             HH-CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             20-123331--100378742588899997424
Q gi|254780545|r  176 LG-GRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       176 ~g-~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      +| .-+|+|  +-+|||+++|||.||-.+..+
T Consensus        52 LGiGG~P~GRivEi~G~esSGKTtlal~~iae   83 (350)
T PRK09354         52 LGIGGLPKGRIVEIYGPESSGKTTLALHAIAE   83 (350)
T ss_pred             HCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             75899678708999889877799999999999


No 294
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.62  E-value=0.011  Score=38.34  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCC
Q ss_conf             0123331100378742588899997424----699702058
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTIS  213 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~  213 (647)
                      |.++-.=+++.|+||.|||.++--+|-.    .|.|..++|
T Consensus        15 Gl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~s   55 (186)
T pfam03796        15 GLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFS   55 (186)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             98888179999679998799999999999997099668754


No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61  E-value=0.0077  Score=39.55  Aligned_cols=121  Identities=33%  Similarity=0.506  Sum_probs=66.0

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHH-------HHHHHH-----CCHHHHHHHHHHHHH
Q ss_conf             420123331--1003787425888999974246997--020585788-------644420-----332459999999987
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDF-------VELFVG-----VGASRVRDMFEQAKN  238 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~-------~~~~~g-----~g~~~vr~lf~~a~~  238 (647)
                      ..-..+++|  +.+.||.|+|||.|.++++|.....  -+.+.|.+.       ....+|     -|-.+=|-....|-.
T Consensus        17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~QLSgGqkqrv~iA~al~   96 (157)
T cd00267          17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL   96 (157)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             11789879979999878899989999999588479962899999999979999999406087668869999999999997


Q ss_pred             HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             37801206323564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r  239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV  315 (647)
Q Consensus       239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~  315 (647)
                      ..|-|+++||-.+       +.   .-...+.+-+++.++   .. +|.-+|-+|..++.+...      .|+.+.+
T Consensus        97 ~~p~ililDEPts-------gL---D~~~~~~l~~~i~~l---~~-~g~tii~vtH~~~~~~~~------~d~v~~~  153 (157)
T cd00267          97 LNPDLLLLDEPTS-------GL---DPASRERLLELLREL---AE-EGRTVIIVTHDPELAELA------ADRVIVL  153 (157)
T ss_pred             CCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHH---HH-CCCEEEEEECCHHHHHHH------CCEEEEE
T ss_conf             0999999969876-------68---999999999999999---96-899999990899999997------9999997


No 296
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.61  E-value=0.07  Score=32.60  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH-HHHHHHC
Q ss_conf             9999999987433567664201233311003787425888-9999742
Q gi|254780545|r  157 KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL-LARAVAG  203 (647)
Q Consensus       157 k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl-la~a~a~  203 (647)
                      .++-.|++.+|++-     -..+++.-++|+|++|||||+ |+.|++-
T Consensus         4 R~~tlel~~~l~~~-----~~~~~~~r~vL~G~~GsGKS~~L~q~v~~   46 (274)
T pfam10236         4 REETLELTKKLKEA-----DASKKVVRFVLTGERGSGKSVLLAQAMAY   46 (274)
T ss_pred             CHHHHHHHHHHHHH-----CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             15899999999874-----04799518998897997799999999999


No 297
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.60  E-value=0.015  Score=37.49  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=19.6

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +-..+++|  +.+.||.|||||.|.|.++|-.
T Consensus        26 is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~   57 (225)
T PRK10247         26 INFSLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             17998599699999999999999999996466


No 298
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57  E-value=0.026  Score=35.70  Aligned_cols=31  Identities=35%  Similarity=0.646  Sum_probs=24.8

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             6420123331--100378742588899997424
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..+-..+++|  +.+.||+|+|||.|.+.++|.
T Consensus        24 ~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~   56 (192)
T cd03232          24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             ECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             883889928839999999999889999998379


No 299
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.54  E-value=0.067  Score=32.74  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------CE---------ECCCHHHHHHHH-HH--
Q ss_conf             998743356766420123331100378742588899997424699-------70---------205857886444-20--
Q gi|254780545|r  163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-------PF---------FTISGSDFVELF-VG--  223 (647)
Q Consensus       163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~f---------~~~~~s~~~~~~-~g--  223 (647)
                      ++..|++--+    ..++|...||+|  |+||+-+|+++|...-+       |.         .+-+.+|+.... .|  
T Consensus        10 i~~~l~~~i~----~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~~~~   83 (290)
T PRK07276         10 LFQRFQTILE----QDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQGQV   83 (290)
T ss_pred             HHHHHHHHHH----CCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCC
T ss_conf             9999999998----499650542169--8687999999999981899999898988999999876999871377167775


Q ss_pred             CCHHHHHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             3324599999999873----780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  224 VGASRVRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       224 ~g~~~vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                      .+-..||++-......    ..=|+.||+.|-+-              .+.-|.||--+.  +...++++|=.|+.++.+
T Consensus        84 I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt--------------~~AaNaLLK~LE--EPp~~t~~iLlt~~~~~l  147 (290)
T PRK07276         84 IKTDTIRELTANFSQSGYEGKRQVFIIKDADKMH--------------VNAANSLLKVIE--EPQSEIYIFLLTNDENKV  147 (290)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCCEEEEEECCHHHC
T ss_conf             7688999999998445613782799977656529--------------999999999703--898883799887992549


Q ss_pred             CHHHC-CC
Q ss_conf             83331-65
Q gi|254780545|r  300 DAALL-RP  306 (647)
Q Consensus       300 D~al~-Rp  306 (647)
                      =|-++ |-
T Consensus       148 LpTI~SRC  155 (290)
T PRK07276        148 LPTIKSRT  155 (290)
T ss_pred             CHHHHHCC
T ss_conf             37887366


No 300
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.54  E-value=0.0017  Score=44.27  Aligned_cols=36  Identities=33%  Similarity=0.613  Sum_probs=30.1

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             1003787425888999974246997020585788644
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      |-..||||||||..|+-+|...|.||++. |.-|.+|
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa-G~iFR~~   38 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVSA-GTIFREM   38 (179)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCCCEEEC-CHHHHHH
T ss_conf             99617999970279999999829715621-2799999


No 301
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.53  E-value=0.0015  Score=44.74  Aligned_cols=39  Identities=46%  Similarity=0.835  Sum_probs=27.8

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH
Q ss_conf             0123331--1003787425888999974246---9970205857
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS  215 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s  215 (647)
                      ++-+|+|  +|++|+||||||.||..++.+.   |-|.++++-.
T Consensus        17 ~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          17 GGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             68988997899993899868999999999776269858999920


No 302
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.51  E-value=0.0024  Score=43.16  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-HHHHHCCHH-HHHHH--------
Q ss_conf             335676642012-----333110037874258889999742469970205857886-444203324-59999--------
Q gi|254780545|r  168 CDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-ELFVGVGAS-RVRDM--------  232 (647)
Q Consensus       168 ~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~~~~g~g~~-~vr~l--------  232 (647)
                      +||-+|=.+=.+     .-|-|++.||.-||||.|++.+|..-+.|+..--|-+++ +.|.|.... ...|+        
T Consensus       213 ~nP~~~W~~Ip~~vR~~FvKkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ~  292 (411)
T PRK08099        213 ENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHA  292 (411)
T ss_pred             HCHHHHHHHCCHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             38788888613777775436899989998888999999999978995189899999997189745688889999999999


Q ss_pred             --HHHHHHHCCHHEEHHHHHHH
Q ss_conf             --99998737801206323564
Q gi|254780545|r  233 --FEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       233 --f~~a~~~~p~iifiDeida~  252 (647)
                        =+.|.+.|.-++|+|- |++
T Consensus       293 ~~e~~a~~~AnklLFcDT-D~l  313 (411)
T PRK08099        293 QYIDFAVKYANKVAFIDT-DFV  313 (411)
T ss_pred             HHHHHHHHCCCCEEEEEC-CHH
T ss_conf             999998750597699838-499


No 303
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.51  E-value=0.0029  Score=42.66  Aligned_cols=53  Identities=23%  Similarity=0.327  Sum_probs=40.3

Q ss_pred             HHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             698-89852889999999-998743356766420123331100378742588899997424
Q gi|254780545|r  146 TFK-DVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       146 ~f~-dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      .++ .+-|+.-|++.+.. +.++|.+|.-      +-|-=+-|+|||||||++.|+-||..
T Consensus        22 ~L~~~lfGQhla~~~v~~al~~~l~~~~p------~KpLVlSfHG~tGtGKn~vs~liA~~   76 (127)
T pfam06309        22 DLARRLFGQHLVKQLVVRSVKGHWENPKP------RKPLVLSFHGWTGTGKNFVAEIIADN   76 (127)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCCC------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             99875347798999999999999748999------99748870189998798999999999


No 304
>PRK13764 ATPase; Provisional
Probab=96.50  E-value=0.0014  Score=44.83  Aligned_cols=149  Identities=21%  Similarity=0.248  Sum_probs=70.3

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH-------HCCHHEEHHHHHHH
Q ss_conf             33110037874258889999742469-97020585788644420332459999999987-------37801206323564
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGVGASRVRDMFEQAKN-------NSPCIVFVDEIDAV  252 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~-------~~p~iifiDeida~  252 (647)
                      -+|+|..||||.|||.||.|+|.-.. ..++.-+--+=..|.|+..-...-.|--...+       .-|--..+||+-  
T Consensus       259 a~GilIaG~PGaGKsTfaqalA~~~~~~g~iVKTmEsPRDl~v~~~iTQy~~l~g~~e~t~diLlLvRPDytifDE~R--  336 (605)
T PRK13764        259 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYTPLEGSMEETADILLLVRPDYTIFDEMR--  336 (605)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCCCHHHHEEEEEEECCCCEEEEEHH--
T ss_conf             664999779999778999999999984797898324862366895420524356887773006788548826640020--


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH--HH
Q ss_conf             1445578988626889889989985303235778299996298100883331656423141000134788999999--98
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM--VH  330 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~--~~  330 (647)
                       +.++....  .|-|          |-|   -.-|=|+-||+-.|    |+.   ||=.++++++--     .|+.  +|
T Consensus       337 -~~~Df~if--aD~R----------laG---vGmvGvvHA~~~iD----AiQ---RfigRVELG~IP-----qivDTVIf  388 (605)
T PRK13764        337 -KTEDFEVF--ADMR----------LAG---VGMVGVVHATSPID----AIQ---RFIGRVELGMIP-----QIVDTVIF  388 (605)
T ss_pred             -CCCCCCCE--EHHH----------HCC---CCEEEEEECCCHHH----HHH---HHHCCCHHCCCC-----HHEEEEEE
T ss_conf             -43330000--1010----------005---74476885288789----999---873301105642-----14048999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             54887773211024544120379899999
Q gi|254780545|r  331 SRNVPLAPNVILKTIARGTPGFSGADLRN  359 (647)
Q Consensus       331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~  359 (647)
                      .++-..+.=.+++.-.+--.|+.-+||+.
T Consensus       389 I~~G~v~kVy~l~~tVKvP~Gm~e~DLAR  417 (605)
T PRK13764        389 IKDGEVAKVYDLEFTVKVPTGMKEEDLAR  417 (605)
T ss_pred             EECCEEEEEEEEEEEEECCCCCCHHHCCC
T ss_conf             80784889999888885789988455148


No 305
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.47  E-value=0.02  Score=36.55  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             766420123331--10037874258889999742469
Q gi|254780545|r  172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      -+..+-.++++|  +-+.||.|+|||-|+++++|...
T Consensus        23 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~   59 (207)
T cd03369          23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             2402588986999999999999879999999998728


No 306
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.46  E-value=0.007  Score=39.84  Aligned_cols=103  Identities=28%  Similarity=0.506  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------H------HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHH------CCCC
Q ss_conf             5698898528899999999987433------5------67664201233311003787425888999974------2469
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCD------P------QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA------GEAN  206 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~------~------~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a------~e~~  206 (647)
                      .++++|+--  -.+|-.+.++|||.      |      +...+...+-..-+||.||.|.||++||+-|-      ....
T Consensus       162 sry~~iasr--fa~ere~tl~~lksgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~s  239 (531)
T COG4650         162 SRYNAIASR--FAEEREQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFS  239 (531)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             677789999--999889999999733321585778899999999861469768646887436689999999998887537


Q ss_pred             CCEECCCHHHHHHHHHHCCHH-----HHHHHHHHHH--------HHCCHHEEHHHHHHHH
Q ss_conf             970205857886444203324-----5999999998--------7378012063235641
Q gi|254780545|r  207 VPFFTISGSDFVELFVGVGAS-----RVRDMFEQAK--------NNSPCIVFVDEIDAVG  253 (647)
Q Consensus       207 ~~f~~~~~s~~~~~~~g~g~~-----~vr~lf~~a~--------~~~p~iifiDeida~~  253 (647)
                      -+|..+.+..+.    |.++.     .|+-.|.-|+        ..-.-.+|+|||--+|
T Consensus       240 g~fvevncatlr----gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelg  295 (531)
T COG4650         240 GAFVEVNCATLR----GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELG  295 (531)
T ss_pred             CCEEEEEEEEEC----CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHHHHCC
T ss_conf             862788630004----75288998764001314633455442433778657567433247


No 307
>cd04155 Arl3 Arl3 subfamily.  Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension.  In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form.  The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.  Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2).  It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery.  In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.45  E-value=0.0044  Score=41.31  Aligned_cols=103  Identities=23%  Similarity=0.375  Sum_probs=58.0

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHHHH
Q ss_conf             110037874258889999742469970205857886---------4442033245999999998737801206-323564
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV-DEIDAV  252 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi-Deida~  252 (647)
                      -|++.|++|+|||.|-+.+.++.-.....+.|....         ..|---|..+.|.+....-+.+-+|||+ |--|. 
T Consensus        16 Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~v~~~~~~~~lwD~~G~~~~~~~~~~y~~~a~~iI~VvD~td~-   94 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK-   94 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCH-
T ss_conf             8999979999889999998569986606811323799998999999985587510126899765556379999966756-


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             14455789886268898899899853032357782999962981008
Q gi|254780545|r  253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                        .       .-++-...++++|.+..  ..+..++++|  |..|..
T Consensus        95 --~-------~~~~~~~~l~~~l~~~~--~~~~PiLiv~--NK~Dl~  128 (173)
T cd04155          95 --K-------RLEEAGAELVELLEEEK--LAGVPVLVFA--NKQDLA  128 (173)
T ss_pred             --H-------HHHHHHHHHHHHHHHHH--CCCCCEEEEE--ECCCCC
T ss_conf             --8-------89999999999974130--0698389999--766677


No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.43  E-value=0.0062  Score=40.22  Aligned_cols=133  Identities=22%  Similarity=0.325  Sum_probs=66.0

Q ss_pred             EEECCCCCHHHHHHHHHHHC-----C--CCCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHCCH
Q ss_conf             10037874258889999742-----4--6997020585-----7886444---20------3324599999999873780
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG-----E--ANVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNSPC  242 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~-----e--~~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~p~  242 (647)
                      +.|+||+|.|||...--+|.     +  ..|-++.+.-     -+-..-|   .|      ..+.-++...+..+.  --
T Consensus       179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~--~d  256 (404)
T PRK06995        179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRN--KH  256 (404)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC--CC
T ss_conf             8986688876375899999999998389837999768754789999999998759559995999999999997089--99


Q ss_pred             HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHH
Q ss_conf             1206323564144557898862688988998998530323-577829999629810088333165642--3141000134
Q gi|254780545|r  243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPD  319 (647)
Q Consensus       243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~  319 (647)
                      +||||-   -|+.       ..|.   -+.+.|..+.... ..+..+|+.||.+.+.|+..+-|-..+  +..|.=-+=-
T Consensus       257 lILIDT---aGrs-------~rD~---~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDE  323 (404)
T PRK06995        257 IVLIDT---VGMS-------QRDR---MVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDE  323 (404)
T ss_pred             EEEEEC---CCCC-------CCCH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             999809---9989-------7688---89999999973578852899977989999999999984469998399830406


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             788999999985
Q gi|254780545|r  320 IVGREHILMVHS  331 (647)
Q Consensus       320 ~~~r~~i~~~~~  331 (647)
                      ...--.||.+-.
T Consensus       324 t~~~G~iln~~~  335 (404)
T PRK06995        324 AASLGGALDTVI  335 (404)
T ss_pred             CCCHHHHHHHHH
T ss_conf             797239999999


No 309
>PRK07261 topology modulation protein; Provisional
Probab=96.40  E-value=0.002  Score=43.80  Aligned_cols=99  Identities=17%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      |+..|+||.|||.||+.++...++|++.+..     .|.+-|-.                                 ...
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~-----l~w~p~w~---------------------------------~~~   44 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQ-----LHFSSNWQ---------------------------------ERD   44 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECC-----EEECCCCE---------------------------------ECC
T ss_conf             9998899986899999999987979797022-----78889998---------------------------------888


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC-CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             268898899899853032357782999962981008-833316564231410001347889999999854
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL-DAALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l-D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                      .+|..+.+++++.+       +.=|+=  -|....+ |.-|   .|-|-.|.+++|-..--..+++-+++
T Consensus        45 ~~e~~~~~~~~~~~-------~~WIiD--Gny~~~~~~~rl---~~aD~iI~Ld~p~~~~l~rvikR~l~  102 (171)
T PRK07261         45 DDDMIADISNFLLK-------QDWIIE--GNYSNCLYEERM---AEADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             HHHHHHHHHHHHHC-------CCEEEE--CCCCCHHHHHHH---HHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             99999999999848-------987994--785124777679---77999999858499999999999999


No 310
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704   At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=96.40  E-value=0.0034  Score=42.15  Aligned_cols=175  Identities=31%  Similarity=0.430  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCCCCCC------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf             8877767663210000------1----12422569889852889999999998743356766420123331100378742
Q gi|254780545|r  123 GARGAMGFGKSKAKLL------S----GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGT  192 (647)
Q Consensus       123 g~~~~msfGKSkAk~~------~----~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGt  192 (647)
                      ..+..|.|-.|++-..      .    .-.+.-+.+|+-|.+-.-+.++..|      ..|    ++-+--||..|..||
T Consensus       284 adGtvftfqesraverldr~~~~~tr~~lrtR~~~~dl~G~s~~Me~VR~~v------~lY----Ars~atVLi~GE~GT  353 (658)
T TIGR02329       284 ADGTVFTFQESRAVERLDRALRSATRNQLRTRYRLDDLLGESAAMEQVRALV------RLY----ARSAATVLIEGESGT  353 (658)
T ss_pred             CCCCEEEEHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHH------HHH----CCCCCEEEEECCCCC
T ss_conf             3550454022478899988621303554320345476538982138999999------852----688650675147772


Q ss_pred             HHHHHHHHHHCC-----------CCCCEECCCHHHHHHHHH-----H--CC----HHH--HHHHHHHHHHHCCHHEEHHH
Q ss_conf             588899997424-----------699702058578864442-----0--33----245--99999999873780120632
Q gi|254780545|r  193 GKTLLARAVAGE-----------ANVPFFTISGSDFVELFV-----G--VG----ASR--VRDMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       193 GKTlla~a~a~e-----------~~~~f~~~~~s~~~~~~~-----g--~g----~~~--vr~lf~~a~~~~p~iifiDe  248 (647)
                      ||=|.|++|-.|           -..||+.|++--|-|-..     |  +|    +.|  =--||+-|..   --+|+||
T Consensus       354 GKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~---GTLFLDE  430 (658)
T TIGR02329       354 GKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDE  430 (658)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC---CCEEEHH
T ss_conf             2899999975999874666501337884687474656888877642676665016776776122220057---9510010


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHCC--CCCCC----CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHH
Q ss_conf             3564144557898862688988-9989985303--23577----829999629810088333165642314100013478
Q gi|254780545|r  249 IDAVGRHRGIGLGGGNDEREQT-LNQLLVEMDG--FESSE----GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIV  321 (647)
Q Consensus       249 ida~~~~r~~~~~~~~~e~~~~-ln~ll~~mdg--~~~~~----~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~  321 (647)
                      |=-+=       -.     -|| |--.|.|=.=  .....    .|=|||||.++  |+..+ --|||=+       |.=
T Consensus       431 IGEmP-------LP-----LQtRLLRVLeEreV~RvG~~~P~~VDvRvvaAth~~--L~~~v-~~GrFR~-------DLf  488 (658)
T TIGR02329       431 IGEMP-------LP-----LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA--LETAV-QQGRFRR-------DLF  488 (658)
T ss_pred             HCCCC-------CH-----HHHHHHHHHHCCCEEECCCCCCCEEEEEEEECCCHH--HHHHH-HCCCCCH-------HHH
T ss_conf             03578-------61-----467777765122147617875402444343312222--58798-5788242-------289


Q ss_pred             HHHHHHHHHHC
Q ss_conf             89999999854
Q gi|254780545|r  322 GREHILMVHSR  332 (647)
Q Consensus       322 ~r~~i~~~~~~  332 (647)
                      -|..||++.+-
T Consensus       489 YRL~~Lri~lP  499 (658)
T TIGR02329       489 YRLSILRIDLP  499 (658)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999851478


No 311
>TIGR01351 adk adenylate kinases; InterPro: IPR006259    Most members of this family are known or believed to be adenylate kinase.   Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells  and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason.   ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.  ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.39  E-value=0.0034  Score=42.07  Aligned_cols=185  Identities=25%  Similarity=0.332  Sum_probs=102.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHH-HCCCCCCCC
Q ss_conf             100378742588899997424699702058578864442033245999999998737-801206323564-144557898
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS-PCIVFVDEIDAV-GRHRGIGLG  261 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~-p~iifiDeida~-~~~r~~~~~  261 (647)
                      ++|.||||+||=-.|+-|+.+.++|-+|+          |       |||+.+-+.. |==.=+.+   + -..+|. ..
T Consensus         2 ~~~lGpPGsGKGTQa~~i~~~~gl~HIST----------G-------DllR~~~~~~T~LG~~~k~---y~y~~~G~-LV   60 (232)
T TIGR01351         2 LILLGPPGSGKGTQAKRIAEKLGLPHIST----------G-------DLLRAAVKAGTPLGKKAKE---YNYMDKGE-LV   60 (232)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCC----------H-------HHHHHHHHHCCHHHHHHHC---CCCCCCCC-CC
T ss_conf             46755989876679999998608850202----------5-------8999998707977898732---67200377-57


Q ss_pred             CCCHHHHHHHHHHHH-HHCCC-CC-----CCCEEEEE---ECCCCCCCCHHHCCCCC-CCCEEEECHHH-HHHHHHHHHH
Q ss_conf             862688988998998-53032-35-----77829999---62981008833316564-23141000134-7889999999
Q gi|254780545|r  262 GGNDEREQTLNQLLV-EMDGF-ES-----SEGVILIA---ATNRPDVLDAALLRPGR-FDRQITVPNPD-IVGREHILMV  329 (647)
Q Consensus       262 ~~~~e~~~~ln~ll~-~mdg~-~~-----~~~v~vi~---aTn~~~~lD~al~RpgR-fd~~i~~~~P~-~~~r~~i~~~  329 (647)
                        -|   +++|+|+. .|+.- +.     .+|.|+=|   +-+..+.||.-|-+.|- +|..|++..|| ..=...|..-
T Consensus        61 --PD---~~v~~lv~~rl~~~~~~~~~~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR  135 (232)
T TIGR01351        61 --PD---EIVNQLVKERLQQNPDCVSLKSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGR  135 (232)
T ss_pred             --CH---HHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCC
T ss_conf             --78---9999999999745600011010686266388887899999999998618984178885358799999977327


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8548877732110245441203-798999999999876455320242104568999750136865567666866778999
Q gi|254780545|r  330 HSRNVPLAPNVILKTIARGTPG-FSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA  408 (647)
Q Consensus       330 ~~~~~~~~~~~d~~~la~~t~g-~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vA  408 (647)
                      ..-. ....-.++..--=..+| .++.|...    +-.+..|.       +|=++++                 .+|+..
T Consensus       136 ~~cp-~cG~~Yh~~f~pPk~~gG~~~cD~~~----~~~l~qR~-------DD~~evv-----------------~~RL~~  186 (232)
T TIGR01351       136 RICP-SCGRVYHIKFNPPKVPGGENLCDDCG----GELLIQRE-------DDTEEVV-----------------KKRLEV  186 (232)
T ss_pred             CCCC-CCCCEEEECCCCCCCCCCCCCCCCCC----CCEEEEEC-------CCCHHHH-----------------HHHHHH
T ss_conf             3306-77855610227886787679886445----75027706-------9988999-----------------999999


Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999999985058
Q gi|254780545|r  409 YHEAGHAVVACHVPK  423 (647)
Q Consensus       409 yHEAGHAlva~~l~~  423 (647)
                      |||---=|+.|+-..
T Consensus       187 Y~~~t~Pli~yY~~~  201 (232)
T TIGR01351       187 YKEQTEPLIDYYRKK  201 (232)
T ss_pred             HHHHCCHHHHHHHHC
T ss_conf             888520089999846


No 312
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.38  E-value=0.02  Score=36.56  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=21.2

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             3110037874258889999742469
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      |=+.|+||+|.|||.|++++..+-.
T Consensus         2 klivl~GPSG~GK~tl~~~L~~~~~   26 (182)
T pfam00625         2 RPIVLSGPSGVGKSHIKKALLDEYP   26 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             8699989899999999999998486


No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38  E-value=0.032  Score=35.02  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHC
Q ss_conf             2333110037874258889999742
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAG  203 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~  203 (647)
                      +.|+=++|+||.|+|||..+--+|.
T Consensus        73 ~~~~vI~lvG~~G~GKTTT~AKLA~   97 (270)
T PRK06731         73 KEVQTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9981899988898988999999999


No 314
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.37  E-value=0.0024  Score=43.21  Aligned_cols=52  Identities=35%  Similarity=0.731  Sum_probs=33.2

Q ss_pred             HHCCCCCCEE--ECCCCCHHHHHHHHHHHCCC---C--CCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             2012333110--03787425888999974246---9--97020585788644420332459999999
Q gi|254780545|r  176 LGGRIPHGVL--LVGPPGTGKTLLARAVAGEA---N--VPFFTISGSDFVELFVGVGASRVRDMFEQ  235 (647)
Q Consensus       176 ~g~~~p~g~l--l~GppGtGKTlla~a~a~e~---~--~~f~~~~~s~~~~~~~g~g~~~vr~lf~~  235 (647)
                      ||+-.-+|+.  +|||||||||-+|=.+|-++   |  |-|+-+-|        |.+..|+|+++..
T Consensus         5 LgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEG--------GLS~ER~~q~~~~   63 (223)
T TIGR02237         5 LGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEG--------GLSPERFKQIAED   63 (223)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--------CCHHHHHHHHHHC
T ss_conf             0585120358898758998678999999999986189589996289--------8328999998630


No 315
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif.  It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=96.35  E-value=0.014  Score=37.73  Aligned_cols=52  Identities=27%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             78012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       240 ~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      -|.++.|||+..+....+      .++..... .+|+.+=--...-||.+|.||.||..
T Consensus       151 p~ivvviDE~~~l~~~~~------~~~~~~~~-~~l~~iar~GRa~GihlilatQrP~~  202 (202)
T pfam01580       151 PPIVVIVDERAELMLAAP------KDSEMRVE-GALARLARMGRAAGIHLLLATQRPGV  202 (202)
T ss_pred             CCEEEEEHHHHHHHHHCC------HHHHHHHH-HHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf             818986445999986555------04689999-99999999887338299998189999


No 316
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35  E-value=0.018  Score=36.92  Aligned_cols=33  Identities=36%  Similarity=0.628  Sum_probs=24.1

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             66420123331--1003787425888999974246
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +..+...+++|  +-++||.|+|||.|.+.+.|-.
T Consensus        18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~   52 (234)
T cd03251          18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             53608998799999999899982999999996676


No 317
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.34  E-value=0.0058  Score=40.42  Aligned_cols=91  Identities=26%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC-----C--CCEECCCHHHHHHHH---HHCCHHHHHHHHHH-------HHHHCC--HHE
Q ss_conf             1003787425888999974246-----9--970205857886444---20332459999999-------987378--012
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA-----N--VPFFTISGSDFVELF---VGVGASRVRDMFEQ-------AKNNSP--CIV  244 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~-----~--~~f~~~~~s~~~~~~---~g~g~~~vr~lf~~-------a~~~~p--~ii  244 (647)
                      ++..|-||||||++|-.+..+.     +  ..|++.+++...-.+   .+....+.+.+|..       ..+..|  .|+
T Consensus         4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~fi~~~~~~~~~~dvv   83 (348)
T pfam09848         4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTSFINNLHKAPPHEDVV   83 (348)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf             99977799389999999999986440268208995786699999999860412001020007252316523579867789


Q ss_pred             EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             063235641445578988626889889989985303
Q gi|254780545|r  245 FVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG  280 (647)
Q Consensus       245 fiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg  280 (647)
                      ++||..=+=.+....    +.  ..--|||..-|+.
T Consensus        84 ivDEAhRl~~k~~~~----~~--~~~~~ql~~i~~~  113 (348)
T pfam09848        84 IVDEAHRLWTKSDLY----FN--FSGPNQLDEIMKR  113 (348)
T ss_pred             EEEHHHHHHHCCCCC----CC--CCCHHHHHHHHHH
T ss_conf             983178665433655----67--7857999999975


No 318
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.31  E-value=0.018  Score=36.81  Aligned_cols=101  Identities=24%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      +-|.|.||.|||.||+++...                           |    ++....+++||- |.+-..-+...+-+
T Consensus         5 iW~TGLsGsGKTTlA~~l~~~---------------------------L----~~~~~~~~~LDG-D~~R~~l~~dlgys   52 (157)
T pfam01583         5 VWFTGLSGSGKSTIANALERK---------------------------L----FAQGISVYVLDG-DNVRHGLNKDLGFS   52 (157)
T ss_pred             EEEECCCCCCHHHHHHHHHHH---------------------------H----HHCCCCEEEECC-HHHHCCCCCCCCCC
T ss_conf             998898999999999999999---------------------------9----975997799768-87750125777989


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC---C-CCCCCEEEECHH
Q ss_conf             268898899899853032357782999962981008833316---5-642314100013
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR---P-GRFDRQITVPNP  318 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R---p-gRfd~~i~~~~P  318 (647)
                      -.+|. .....+.++-.+-.+.|++||+++.-|-.=.-...|   + ++| ..|+|.-|
T Consensus        53 ~~~R~-~n~~r~~~lak~l~~~g~~VIvs~isp~~~~R~~~r~~~~~~~y-~EIyv~~~  109 (157)
T pfam01583        53 EEDRT-ENIRRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKF-IEVFVDTP  109 (157)
T ss_pred             HHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCE-EEEEECCC
T ss_conf             89999-99999999999984289658872157899999999986478857-99996386


No 319
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.29  E-value=0.11  Score=31.31  Aligned_cols=178  Identities=17%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCC
Q ss_conf             33110037874258889999742469970205857886444203324599999999873780120632356414455789
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL  260 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~  260 (647)
                      |+=+|+.|.|||||+.+|-.+|...|.+-+  -++|.           ||++.+..-...|. ++---.+|.- .-    
T Consensus         3 ~~iiligG~sGvGKStla~~lA~rlgi~~v--isTD~-----------IRevlR~~i~~eP~-L~~Ssy~A~~-~~----   63 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRAIDIV--LSGDY-----------LREFLRPYVDDEPV-LAKSVYDAWE-FY----   63 (197)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEE--ECCHH-----------HHHHHHHHCCCCCC-HHHHHHHHHH-HC----
T ss_conf             479998579988789999999997499755--34347-----------99999986688740-0330467988-70----


Q ss_pred             CCCCHH------HHHHHHHHHHHHCC----C-CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             886268------89889989985303----2-357782999962981008833316564231410001347889999999
Q gi|254780545|r  261 GGGNDE------REQTLNQLLVEMDG----F-ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       261 ~~~~~e------~~~~ln~ll~~mdg----~-~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
                      +...++      .+| .+++..-+++    . .....+|+=|.-=.|..+|.-. +.+-  ..+.+-.+|.+.-++-|..
T Consensus        64 ~~~~~~~ii~Gf~~q-~~~V~~gi~avi~Ra~~eg~slIIEGVHlvP~~i~~~~-~~~~--~~~~l~i~dee~H~~Rf~~  139 (197)
T PRK12339         64 GSMTDENIVKGYLDQ-ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-TNNI--RAFYLYIRDAELHRSRLAD  139 (197)
T ss_pred             CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHH-HCCE--EEEEEEECCHHHHHHHHHH
T ss_conf             896527899999999-99999999999999997399779985211778877887-6595--8999997888999999999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf             8548877732110245441203798999999999876-45532024210456899975013
Q gi|254780545|r  330 HSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAAL-MAARRNRRLVTMQEFEDAKDKIL  389 (647)
Q Consensus       330 ~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~-~a~r~~~~~i~~~dl~~A~~rv~  389 (647)
                      -.+....+.  ..++..+.-+     .|. ..++-.+ .|-+.+-+.|...++++++++++
T Consensus       140 R~~~~~~~~--p~~ry~~~f~-----~IR-~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~  192 (197)
T PRK12339        140 RINYTHKNS--PGKRLAEHLP-----EYR-TIMDYSIADARGYNIKVIDTDNYREARNPLL  192 (197)
T ss_pred             HHHHCCCCC--HHHHHHHHHH-----HHH-HHHHHHHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf             854312677--1669999899-----999-9999999988873998553772899999999


No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.25  E-value=0.0041  Score=41.55  Aligned_cols=74  Identities=26%  Similarity=0.395  Sum_probs=45.5

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH--------HHHHHHHH------HCCHHHHHHHHHHHHHHC
Q ss_conf             0123331100378742588899997424699--7020585--------78864442------033245999999998737
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG--------SDFVELFV------GVGASRVRDMFEQAKNNS  240 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~--------s~~~~~~~------g~g~~~vr~lf~~a~~~~  240 (647)
                      -++--+.+|..||+|+|||-|.+|++.+..-  -++.+--        +..+.+..      +.+.-...++++.|-...
T Consensus        21 ~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~~~~~~li~~aLR~~  100 (186)
T cd01130          21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR  100 (186)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHCCCC
T ss_conf             99859989998999998999999999613345645984153540477775688886046457865034999988736689


Q ss_pred             CHHEEHHHHH
Q ss_conf             8012063235
Q gi|254780545|r  241 PCIVFVDEID  250 (647)
Q Consensus       241 p~iifiDeid  250 (647)
                      |-.|++-|+-
T Consensus       101 pd~iivGEiR  110 (186)
T cd01130         101 PDRIIVGEVR  110 (186)
T ss_pred             CCEEECCCCC
T ss_conf             9737317568


No 321
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.23  E-value=0.005  Score=40.88  Aligned_cols=30  Identities=43%  Similarity=0.655  Sum_probs=22.9

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             420123331--100378742588899997424
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      -+|.-.++|  .|+.||||||||.||--.+.+
T Consensus       258 llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~  289 (501)
T PRK09302        258 MCGGGFFRGSIILVSGATGTGKTLLVSKFAEA  289 (501)
T ss_pred             HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             72599758946999889998889999999999


No 322
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.22  E-value=0.011  Score=38.32  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=26.9

Q ss_pred             HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             766420123331--10037874258889999742469
Q gi|254780545|r  172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      -+..+-..+|+|  +-+.||.|+|||-|++++.+-..
T Consensus        36 vL~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~   72 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             CEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             3105389987999999999999819999999960566


No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.22  E-value=0.0025  Score=43.06  Aligned_cols=30  Identities=23%  Similarity=0.548  Sum_probs=26.6

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             110037874258889999742469970205
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      -++|.||||+||+..|+-+|...+++.+++
T Consensus         2 ~iillGpPGsGKgT~a~~l~~~~~~~hiSt   31 (225)
T PTZ00088          2 KIVLFGAPGVGKGTFAEILSKKEKLKHINM   31 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf             799989999987999999999879906878


No 324
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21  E-value=0.019  Score=36.67  Aligned_cols=32  Identities=41%  Similarity=0.672  Sum_probs=25.2

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .....+++|  +-+.||.|||||.|.++++|-..
T Consensus        22 ~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~   55 (220)
T cd03293          22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             7188987998999999999579999999975999


No 325
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.19  E-value=0.0031  Score=42.43  Aligned_cols=38  Identities=32%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             3331100378742588899997424699702058578864
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      -|.=+++.|++|||||.+|+++|...++||+-  |-+|-+
T Consensus         7 ~~~iiVVMGVsGsGKSTig~~LA~~l~~~fie--gDdfHp   44 (177)
T PRK11545          7 DHHIYVLMGVSGSGKSAVASAVAHQLHAAFLD--GDFLHP   44 (177)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEC--CCCCCC
T ss_conf             87599998479899999999999981998553--655589


No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.19  E-value=0.027  Score=35.66  Aligned_cols=34  Identities=29%  Similarity=0.610  Sum_probs=26.6

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ...+-..+++|  +.+.||.|+|||-|.++++|...
T Consensus        18 L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~   53 (178)
T cd03247          18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             325589986999999999998759999999986176


No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19  E-value=0.0089  Score=39.08  Aligned_cols=37  Identities=35%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHH----CCCCCCEECCC
Q ss_conf             01233311003787425888999974----24699702058
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVA----GEANVPFFTIS  213 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a----~e~~~~f~~~~  213 (647)
                      |.++-.=+++.|+||+|||.|+..+|    .+.|.|.+..|
T Consensus        26 Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S   66 (271)
T cd01122          26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS   66 (271)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99998089999689986999999999999997699089997


No 328
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19  E-value=0.019  Score=36.65  Aligned_cols=145  Identities=16%  Similarity=0.291  Sum_probs=72.6

Q ss_pred             CCCCEEECCCCCHHHHHH-HHHH---HCCC-CCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHC
Q ss_conf             333110037874258889-9997---4246-997020585-----7886444---20------33245999999998737
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLL-ARAV---AGEA-NVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNS  240 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTll-a~a~---a~e~-~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~  240 (647)
                      -..-|-|.||.|.|||-. ||--   .++- .|.|+.+.-     -+=+.-|   .|      ..+.-++.....-+..+
T Consensus       240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf             17179998999988899999999998616980899980663476999999999984994399688899999999876336


Q ss_pred             CH-HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC--CCCEEEECH
Q ss_conf             80-120632356414455789886268898899899853032357782999962981008833316564--231410001
Q gi|254780545|r  241 PC-IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR--FDRQITVPN  317 (647)
Q Consensus       241 p~-iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~~~  317 (647)
                      -| +||||-   -|+      + ..|+  .-+.+|...++........+|+.||.+...+...+-|-+.  +|..|.--+
T Consensus       320 ~~DLILIDT---AGR------S-~RD~--~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~idglIfTKL  387 (436)
T PRK11889        320 RVDYILIDT---AGK------N-YRAS--ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEEC---CCC------C-CCCH--HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             888899929---898------8-4689--999999999851277716999978899899999999725799882899713


Q ss_pred             HHHHHHHHHHHHHH-CCCCC
Q ss_conf             34788999999985-48877
Q gi|254780545|r  318 PDIVGREHILMVHS-RNVPL  336 (647)
Q Consensus       318 P~~~~r~~i~~~~~-~~~~~  336 (647)
                      -....--.||.+.. .++|+
T Consensus       388 DET~SlG~ILNv~~~s~LPI  407 (436)
T PRK11889        388 DETASSGELLKIPAVSSAPI  407 (436)
T ss_pred             CCCCCCHHHHHHHHHHCCCE
T ss_conf             25687037888998839987


No 329
>KOG0482 consensus
Probab=96.17  E-value=0.098  Score=31.55  Aligned_cols=171  Identities=28%  Similarity=0.358  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCCCCCEECC-CHHHHHHHHHHCC
Q ss_conf             898528899999999987433567664201233--3110037874258889999742469970205-8578864442033
Q gi|254780545|r  149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEANVPFFTI-SGSDFVELFVGVG  225 (647)
Q Consensus       149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-~~s~~~~~~~g~g  225 (647)
                      .|-|.+++|..|.-..  .-.|++-..-|.|+-  -.|+|.|-||.-|+-|-+.+..=+--..+.+ .||+    =||.+
T Consensus       343 EIyGheDVKKaLLLlL--VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT  416 (721)
T KOG0482         343 EIYGHEDVKKALLLLL--VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT  416 (721)
T ss_pred             HHCCCHHHHHHHHHHH--HCCCCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCC----CCCCC
T ss_conf             6306167999999995--17888888887666253469963897133899999998507665030388877----65511


Q ss_pred             HHHHHHHHH-------HHHH-HCCHHEEHHHHHHHHC-CCCCCCCCCCHHHH-HHHHHHHHHHCCCCC--CCCEEEEEEC
Q ss_conf             245999999-------9987-3780120632356414-45578988626889-889989985303235--7782999962
Q gi|254780545|r  226 ASRVRDMFE-------QAKN-NSPCIVFVDEIDAVGR-HRGIGLGGGNDERE-QTLNQLLVEMDGFES--SEGVILIAAT  293 (647)
Q Consensus       226 ~~~vr~lf~-------~a~~-~~p~iifiDeida~~~-~r~~~~~~~~~e~~-~~ln~ll~~mdg~~~--~~~v~vi~aT  293 (647)
                      |+-.||--.       -|-- .---|.-|||+|-... .|.+    -|..-| ||+.-   ---|..+  |...-++||.
T Consensus       417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA----IHEVMEQQTISI---aKAGI~TtLNAR~sILaAA  489 (721)
T KOG0482         417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA----IHEVMEQQTISI---AKAGINTTLNARTSILAAA  489 (721)
T ss_pred             HHHHCCCCCCEEEECCCEEEECCCCEEEEHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHC
T ss_conf             121137777706860663897169657612333230333579----999987654456---3420100050567766544


Q ss_pred             CC----------C---CCCCHHHCCCCCCCCEE-EECHHHHHHH----HHHHHHHHCCC
Q ss_conf             98----------1---00883331656423141-0001347889----99999985488
Q gi|254780545|r  294 NR----------P---DVLDAALLRPGRFDRQI-TVPNPDIVGR----EHILMVHSRNV  334 (647)
Q Consensus       294 n~----------~---~~lD~al~RpgRfd~~i-~~~~P~~~~r----~~i~~~~~~~~  334 (647)
                      |-          |   =.|.+|||-  |||-.. -.+.||.+.-    ..|.-+|..+.
T Consensus       490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~  546 (721)
T KOG0482         490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEE  546 (721)
T ss_pred             CCCCCCCCCCCCHHHHCCCCHHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             7433466866696673698488987--54546421268764334899877675540377


No 330
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.17  E-value=0.0091  Score=39.02  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=72.7

Q ss_pred             EEECCCCCHHHHHHHHHH----HCCCCCCEECCCHHHH----HHHHHHCCHHH---HHHHHHHHH-HHCCHHEEHHHHHH
Q ss_conf             100378742588899997----4246997020585788----64442033245---999999998-73780120632356
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAV----AGEANVPFFTISGSDF----VELFVGVGASR---VRDMFEQAK-NNSPCIVFVDEIDA  251 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~----a~e~~~~f~~~~~s~~----~~~~~g~g~~~---vr~lf~~a~-~~~p~iifiDeida  251 (647)
                      .|..|.||+|||+.|=..    |-..|-+.+. .-..+    +..+.|.....   +-+.+..=+ ...-++|+|||.--
T Consensus         3 ~litG~pGsGKS~~aV~~~i~~al~~GR~V~t-NI~gL~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~g~liViDE~~~   81 (183)
T pfam05707         3 YLITGKPGSGKTLEAVSYHILPALKKGRKVIT-NIDGLNLERFPKVFGEDVRERLEDIGYMDPWRTYPKGALLVIDEAQT   81 (183)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCHH
T ss_conf             99935999962299999999999878998998-78653522101223444543200001222331499987999989765


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf             41445578988626889889989985303235778299996298100883331656423141000134788999
Q gi|254780545|r  252 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREH  325 (647)
Q Consensus       252 ~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~  325 (647)
                      +-+.|+.+..  .+   ..+.. |.+    ....|+=++-.|-.|..||+.+++  +-++++.+-..+.-+...
T Consensus        82 ~~~~r~~~~~--~~---~~i~~-l~~----HRH~G~DiiliTQ~~~~id~~ir~--lve~~~~~~r~~~~g~~~  143 (183)
T pfam05707        82 WFPSRRGGDK--VP---PVLDA-FST----HRHLGWDIILITQNPSKIDKQIRA--LVEHHVHCRRLTALGIKG  143 (183)
T ss_pred             HCCCCCCCCC--CC---HHHHH-HHH----CCCCCCEEEEEECCHHHHHHHHHH--HHCEEEEEEECCCCCCCC
T ss_conf             5488777888--83---89999-998----077882089991897997299998--614899999533468863


No 331
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.16  E-value=0.0028  Score=42.68  Aligned_cols=116  Identities=24%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      ++|.||||+||+..|+-+|...+++.+++  .+++..-              .+..+|-=   -++..+ ..+|. ..  
T Consensus         3 iillG~PGsGKgTqa~~la~~~~~~~is~--GdllR~~--------------i~~~s~~g---~~i~~~-~~~G~-lV--   59 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIPHIST--GDMLRAA--------------IKAGTELG---KEAKSY-MDAGE-LV--   59 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHH--------------HHCCCHHH---HHHHHH-HHCCC-CC--
T ss_conf             99989999987999999999869917868--8999999--------------87399889---999999-97798-77--


Q ss_pred             CHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCC------CHHHCCCCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf             2688988998998-53032357782999962981008------833316564-23141000134788999999
Q gi|254780545|r  264 NDEREQTLNQLLV-EMDGFESSEGVILIAATNRPDVL------DAALLRPGR-FDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       264 ~~e~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~~~~l------D~al~RpgR-fd~~i~~~~P~~~~r~~i~~  328 (647)
                      .|   .++++|+. .|...+...|.|+=   ..|-.+      |..+..+|+ .|..|++..|+..-.+.++.
T Consensus        60 pd---~i~~~lv~~~l~~~~~~~G~IlD---GfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~  126 (215)
T PRK00279         60 PD---EIVIGLVKERLAQPDCANGFLLD---GFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSG  126 (215)
T ss_pred             CH---HHHHHHHHHHHHCCCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHC
T ss_conf             88---99999999998365655707986---899987999999999986499868899996889999999861


No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.16  E-value=0.04  Score=34.40  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=26.3

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHC----CCCCCEECCCH
Q ss_conf             012333110037874258889999742----46997020585
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAG----EANVPFFTISG  214 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~----e~~~~f~~~~~  214 (647)
                      |.++-.=+++.|+||+|||.++..+|-    ..|.+.+.+|.
T Consensus         9 G~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~Sl   50 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             999981899996899999999999999999977995999933


No 333
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14  E-value=0.03  Score=35.29  Aligned_cols=34  Identities=35%  Similarity=0.613  Sum_probs=26.7

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...-..+|+|  +.|.||-|+|||.|.|.++|-..
T Consensus        17 l~~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~   52 (200)
T PRK13540         17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             812278987997999988999879999999977858


No 334
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.14  E-value=0.05  Score=33.67  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             3110037874258889999742469
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +=++++||+|+|||-|++.+..+-.
T Consensus         8 ~livisGPSG~GK~tl~~~L~~~~p   32 (208)
T PRK00300          8 LLIVLSAPSGAGKSTLVRALLERDP   32 (208)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             3899999998899999999997299


No 335
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.12  E-value=0.05  Score=33.63  Aligned_cols=32  Identities=38%  Similarity=0.731  Sum_probs=25.3

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             6420123331--1003787425888999974246
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ..+...++.|  +.+.||+|+|||-|.++++|..
T Consensus        26 ~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~   59 (194)
T cd03213          26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             ECCEEEEECCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             8838899088199999899951999999985777


No 336
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.12  E-value=0.035  Score=34.81  Aligned_cols=29  Identities=41%  Similarity=0.701  Sum_probs=20.6

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             20123331--100378742588899997424
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      +-..+++|  +.+.||+|+|||-|.+.++|-
T Consensus        20 vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl   50 (214)
T cd03292          20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             1779859989999979995399999999629


No 337
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains.  The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence.  This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.11  E-value=0.047  Score=33.88  Aligned_cols=20  Identities=40%  Similarity=0.602  Sum_probs=11.8

Q ss_pred             EEECCCCCHHHHHHHHHHHC
Q ss_conf             10037874258889999742
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG  203 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~  203 (647)
                      +.|.||.|+|||.|.+++.+
T Consensus        25 taivG~NGaGKSTLl~~i~~   44 (204)
T cd03240          25 TLIVGQNGAGKTTIIEALKY   44 (204)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99998999999999999863


No 338
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.09  E-value=0.011  Score=38.56  Aligned_cols=79  Identities=22%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH---------HHHHHHHH-----HCCHHHHHHHHH
Q ss_conf             6766420123331100378742588899997424699--7020585---------78864442-----033245999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG---------SDFVELFV-----GVGASRVRDMFE  234 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~---------s~~~~~~~-----g~g~~~vr~lf~  234 (647)
                      ..|-+.-++-.+.+|..|+.|+|||-|++|++.+..-  -++.+--         +..+.++.     |.+.--.++|.+
T Consensus       150 ~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~~~g~~~vt~~~Ll~  229 (332)
T PRK13900        150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKGGQGRAKVTTQDLIE  229 (332)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHH
T ss_conf             99999998648719998888988999999998358953535663140663566688889999716888866086999999


Q ss_pred             HHHHHCCHHEEHHHH
Q ss_conf             998737801206323
Q gi|254780545|r  235 QAKNNSPCIVFVDEI  249 (647)
Q Consensus       235 ~a~~~~p~iifiDei  249 (647)
                      .|-...|--|++-|+
T Consensus       230 ~aLR~rPDRIivGEv  244 (332)
T PRK13900        230 ACLRLRPDRIIVGEL  244 (332)
T ss_pred             HHHCCCCCEEEECCC
T ss_conf             975689975844555


No 339
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.07  E-value=0.032  Score=35.03  Aligned_cols=33  Identities=36%  Similarity=0.500  Sum_probs=24.9

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             66420123331--1003787425888999974246
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +..+-.++|+|  +-++||+|+|||.|++.+.+-.
T Consensus        19 L~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~   53 (238)
T cd03249          19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             22558997699999999999998999999982386


No 340
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria.  Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06  E-value=0.019  Score=36.70  Aligned_cols=33  Identities=36%  Similarity=0.583  Sum_probs=24.5

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             66420123331--1003787425888999974246
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ...+..++|+|  +-+.||+|+|||-|++.+.|-.
T Consensus        17 L~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~   51 (236)
T cd03253          17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             30568998699999999999998999999974385


No 341
>PRK04182 cytidylate kinase; Provisional
Probab=96.06  E-value=0.034  Score=34.88  Aligned_cols=29  Identities=34%  Similarity=0.690  Sum_probs=26.5

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             10037874258889999742469970205
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      |-+.||+|+|||-+|+.+|...|.+|+..
T Consensus         3 ItI~g~~GSGk~tIak~LA~~lg~~~~d~   31 (178)
T PRK04182          3 ITISGPPGSGKTTVARLLAEKLGLKLVSA   31 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf             99958998887999999999959938721


No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.06  E-value=0.037  Score=34.64  Aligned_cols=12  Identities=42%  Similarity=0.479  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999986
Q gi|254780545|r  490 EYATKLARVMVT  501 (647)
Q Consensus       490 ~~AT~iA~~mV~  501 (647)
                      +|--.|||.+..
T Consensus       482 rQRiaiARall~  493 (593)
T PRK10790        482 KQLLALARVLVE  493 (593)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999955


No 343
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.03  E-value=0.0034  Score=42.13  Aligned_cols=25  Identities=44%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             3110037874258889999742469
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .-+.|||||.||||+||.||+.-.+
T Consensus       114 N~i~~~Gp~~TGks~la~ai~~~~~  138 (271)
T pfam01057       114 NTVWFYGPASTGKTNLAQAIAHAVP  138 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             5699988987678999999998689


No 344
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01  E-value=0.023  Score=36.09  Aligned_cols=31  Identities=42%  Similarity=0.700  Sum_probs=25.2

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             420123331--1003787425888999974246
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      .....+++|  +-+.||+|||||.|.|+++|-.
T Consensus        18 ~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~   50 (178)
T cd03229          18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             707698899899999999983999999998599


No 345
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.00  E-value=0.088  Score=31.89  Aligned_cols=98  Identities=20%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf             33311003787425888999974246997020585788644420--3324599999999873780120632356414455
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG  257 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~  257 (647)
                      .|+-++++||-++|||-||=++|.+.+.+.+++.--   ..|-|  .|-++.-   ..-++..| =..||..|--   ..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm---QvYr~mdIGTAKps---~~e~~~vp-HhliDi~~p~---e~   71 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM---QVYRGLDIGTAKPS---LEELAGVP-HHLIDIRDPT---ES   71 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH---HHCCCCCCCCCCCC---HHHHCCCC-EEEECCCCCC---CC
T ss_conf             963799989887577899999999829928930235---53188863079999---99985899-7875456832---25


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECC
Q ss_conf             789886268898899899853032357-7829999629
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATN  294 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn  294 (647)
                      .   +..+    -.-+.+..|+..... +.-|++|-|-
T Consensus        72 y---sa~~----f~~~a~~~i~~i~~rgk~pIlVGGTg  102 (308)
T COG0324          72 Y---SAAE----FQRDALAAIDDILARGKLPILVGGTG  102 (308)
T ss_pred             C---CHHH----HHHHHHHHHHHHHHCCCCCEEECCHH
T ss_conf             5---4999----99999999999996899879976679


No 346
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.99  E-value=0.0044  Score=41.33  Aligned_cols=32  Identities=22%  Similarity=0.544  Sum_probs=26.2

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             10037874258889999742469970205857886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      |+..|+||||||.+++.++ +.|.+.++.  ++|+
T Consensus         3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l--~el~   34 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL--NELA   34 (180)
T ss_pred             EEEECCCCCCHHHHHHHHH-HHCCCEEEH--HHHH
T ss_conf             7993799986687999999-829846619--9999


No 347
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99  E-value=0.02  Score=36.55  Aligned_cols=32  Identities=38%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             6420123331--1003787425888999974246
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ..+-..+++|  +-+.||+|+|||.|.+.+.|..
T Consensus        20 ~~inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   53 (229)
T cd03254          20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             4629998799999999999980999999996686


No 348
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.98  E-value=0.0065  Score=40.08  Aligned_cols=128  Identities=24%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf             233311003787425888999974246-9970205857886444203324599999999873780120632356414455
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG  257 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~  257 (647)
                      .-|+-++|.|+||.|||.+++.+..+. +..++.+++-+|.+            .+.........    |+.++-...  
T Consensus        10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~------------~~P~y~~l~~~----~~~~~~~~~--   71 (191)
T pfam06414        10 ERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRT------------YHPDYDELQKA----DPKDASELT--   71 (191)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH------------HHHHHHHHHHC----CHHHHHHHH--
T ss_conf             698799995799888899999998753789938971358788------------77747865540----767789998--


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf             7898862688988998998530323577829999629810088---33316564231410001347889999999854
Q gi|254780545|r  258 IGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD---AALLRPGRFDRQITVPNPDIVGREHILMVHSR  332 (647)
Q Consensus       258 ~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD---~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~  332 (647)
                            +.+..+...+++...  ++..-++|+=++--.++.+.   ..|..-|..=..+.|..|-...+..++.-|.+
T Consensus        72 ------~~~a~~~~~~~~~~a--~~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry~~  141 (191)
T pfam06414        72 ------QPDASRWVEKLIDYA--IERGYNIILEGTLRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRYEE  141 (191)
T ss_pred             ------HHHHHHHHHHHHHHH--HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             ------999999999999999--9759998985777897999999999997899799999988999999999999985


No 349
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=95.97  E-value=0.013  Score=37.85  Aligned_cols=27  Identities=44%  Similarity=0.804  Sum_probs=21.4

Q ss_pred             HH-CCCCCC--EEECCCCCHHHHHHHHHHH
Q ss_conf             20-123331--1003787425888999974
Q gi|254780545|r  176 LG-GRIPHG--VLLVGPPGTGKTLLARAVA  202 (647)
Q Consensus       176 ~g-~~~p~g--~ll~GppGtGKTlla~a~a  202 (647)
                      +| .-+|+|  +.++|||+||||.||-.+.
T Consensus        44 Lg~GGlP~GRi~ei~G~essGKTtlal~~i   73 (322)
T pfam00154        44 LGIGGLPKGRIIEIYGPESSGKTTLALHAI   73 (322)
T ss_pred             HCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             758997787089998898777899999999


No 350
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217   Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.95  E-value=0.022  Score=36.23  Aligned_cols=117  Identities=31%  Similarity=0.476  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC--CCCEECCCH---------HHHHHHHHHC-----
Q ss_conf             999987433567664201233311003787425888999974246--997020585---------7886444203-----
Q gi|254780545|r  161 QEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA--NVPFFTISG---------SDFVELFVGV-----  224 (647)
Q Consensus       161 ~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~--~~~f~~~~~---------s~~~~~~~g~-----  224 (647)
                      .+++.||-|.      .. -+-..|+.|||=||||.|=|=+|...  |++=+.+.|         ||.-..|-|+     
T Consensus       110 ~~~~~yL~d~------~~-~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~GvPQ~~v  182 (282)
T TIGR02858       110 DKILPYLVDR------NG-RVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVNGVPQLDV  182 (282)
T ss_pred             HHHHHHHHCC------CC-CEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCC
T ss_conf             6668877305------89-4467888868898851048889888607854246899746998432465654588241446


Q ss_pred             C--------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             3--------24599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  225 G--------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       225 g--------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
                      |        .=+---|.-.-|..||=||-.|||=           ..+|     +..||.-     -+.||=||+ |=|-
T Consensus       183 G~RtDVLD~CPKAEGmMM~iRSMSP~Viv~DEIG-----------r~ED-----~~Al~eA-----~naGV~~I~-TaHg  240 (282)
T TIGR02858       183 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG-----------REED-----VEALLEA-----LNAGVSVIA-TAHG  240 (282)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCCEEEEECCC-----------CHHH-----HHHHHHH-----HCCCCEEEE-EECC
T ss_conf             7606751788537899999970698579981488-----------9533-----8999998-----616756887-6404


Q ss_pred             CCCCHHHCCC
Q ss_conf             0088333165
Q gi|254780545|r  297 DVLDAALLRP  306 (647)
Q Consensus       297 ~~lD~al~Rp  306 (647)
                      ..+|.=-.||
T Consensus       241 ~~~~Dl~kRP  250 (282)
T TIGR02858       241 RDLEDLKKRP  250 (282)
T ss_pred             CCHHHHHCCH
T ss_conf             8812665076


No 351
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.95  E-value=0.025  Score=35.81  Aligned_cols=118  Identities=24%  Similarity=0.342  Sum_probs=62.0

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf             6420123331--1003787425888999974246997--020585788644420--332459999999987378012063
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVD  247 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiD  247 (647)
                      ..+-..+++|  +-|.||.|+|||.|.|+++|...-.  -+.+.+..-+ .|+.  -|-.+-|-.+..|-...|-|+++|
T Consensus        17 ~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i-~y~~QLSgGqkqr~~la~al~~~p~iliLD   95 (144)
T cd03221          17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLD   95 (144)
T ss_pred             EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEE-EEEHHCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             6348998799999999899984999999984898898509999996089-987007999999999999972599899995


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             23564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r  248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV  315 (647)
Q Consensus       248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~  315 (647)
                      |--+       +.   .-+..+.+.++|.+..      +-++ -.|...+.++.      -.||.+.+
T Consensus        96 EPt~-------~L---D~~~~~~i~~~l~~~~------~tii-~vsHd~~~~~~------~~drii~l  140 (144)
T cd03221          96 EPTN-------HL---DLESIEALEEALKEYP------GTVI-LVSHDRYFLDQ------VATKIIEL  140 (144)
T ss_pred             CCCC-------CC---CHHHHHHHHHHHHHCC------CEEE-EEECCHHHHHH------HCCEEEEE
T ss_conf             7755-------58---9999999999999709------9999-99679899998------79999999


No 352
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.94  E-value=0.028  Score=35.46  Aligned_cols=31  Identities=42%  Similarity=0.747  Sum_probs=20.7

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             420123331--1003787425888999974246
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      .+-..+|+|  +-+.||.|+|||.|.+.++|..
T Consensus        23 ~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~   55 (204)
T cd03250          23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             148997699899999999985899999981895


No 353
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.93  E-value=0.03  Score=35.29  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             20123331--10037874258889999742469970205857
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
                      ....+++|  +-+.||.|||||+++|++.|-..-.....+|.
T Consensus        22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~   63 (254)
T PRK10418         22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR   63 (254)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCE
T ss_conf             072898999999999998789999999957998898415789


No 354
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91  E-value=0.061  Score=33.04  Aligned_cols=38  Identities=32%  Similarity=0.624  Sum_probs=26.9

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             0123331--10037874258889999742469970205857
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
                      -..+++|  +.+.||.|+|||-|.++++|... |...++|+
T Consensus        27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~-~~~~~~G~   66 (202)
T cd03233          27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-GNVSVEGD   66 (202)
T ss_pred             EEEECCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE
T ss_conf             88980984999998999988999999837878-98751379


No 355
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.91  E-value=0.16  Score=30.04  Aligned_cols=228  Identities=21%  Similarity=0.296  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHH-HHH------HHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf             99999999987-433------5676642----012333110037874258889999742469970205857886444203
Q gi|254780545|r  156 AKEDLQEIVDF-LCD------PQKFKRL----GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV  224 (647)
Q Consensus       156 ~k~~~~~~v~~-l~~------~~~~~~~----g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~  224 (647)
                      -|+++.+.|.. |.+      .++|.-+    -.+-|-=||+-|.+||||+.+|-.+|...|.+=  +-++|.       
T Consensus       226 ~~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RLGI~~--VIsTDs-------  296 (492)
T PRK12337        226 RRDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRLGITR--VVPTDA-------  296 (492)
T ss_pred             EHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCHH-------
T ss_conf             09999999999998730388999999999973568876999607888668889999999609881--025447-------


Q ss_pred             CHHHHHHHHHH--HHHHCCHHEEHHHHHHHHCCCCCCC-CCCCHHHHHH-------HHHHHHHHCCC-----CCCCCEEE
Q ss_conf             32459999999--9873780120632356414455789-8862688988-------99899853032-----35778299
Q gi|254780545|r  225 GASRVRDMFEQ--AKNNSPCIVFVDEIDAVGRHRGIGL-GGGNDEREQT-------LNQLLVEMDGF-----ESSEGVIL  289 (647)
Q Consensus       225 g~~~vr~lf~~--a~~~~p~iifiDeida~~~~r~~~~-~~~~~e~~~~-------ln~ll~~mdg~-----~~~~~v~v  289 (647)
                          ||+++..  .++..|++ +---.+|.-.-+..+. ...+.....+       .++..+-+++.     .....|||
T Consensus       297 ----IREVMR~~is~el~P~L-h~SSy~Awk~L~~~~~~~~~~~~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVI  371 (492)
T PRK12337        297 ----IREVMRAMVSKDLLPTL-HASTFNAWEALVPPGLGLPGEPTRVELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVL  371 (492)
T ss_pred             ----HHHHHHHHCCHHHCCHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             ----99999984597648457-7755688886087345777786076899899999999999999999999972886799


Q ss_pred             EEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH-HHH
Q ss_conf             9962981008833316564231410001347889999999854887773211024544120379899999999987-645
Q gi|254780545|r  290 IAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA-LMA  368 (647)
Q Consensus       290 i~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa-~~a  368 (647)
                      =|.-=.|..+..... .+-+---+.|-+||.+..++=|-.-.+........  +...+.   |  -.|.. +++-. ..|
T Consensus       372 EGVHLvPg~i~~~~~-e~~~vIp~mV~i~dEe~Hr~RF~~R~r~t~~~Rp~--ekYLk~---F--~eIR~-IQdyLv~rA  442 (492)
T PRK12337        372 EGVHLVPGYLQHAYQ-DGALTVPMLVALPDEEEHRRHFELRDRETAASRPL--HRYMRH---F--EEIRL-MQDHLLRLA  442 (492)
T ss_pred             EEEEECHHHHHHHHC-CCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCH--HHHHHH---H--HHHHH-HHHHHHHHH
T ss_conf             833307066666641-58738999998476799999999875141036860--179997---9--99999-999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH
Q ss_conf             53202421045689997501368-655676668667789
Q gi|254780545|r  369 ARRNRRLVTMQEFEDAKDKILMG-AERRSTAMTEEEKKI  406 (647)
Q Consensus       369 ~r~~~~~i~~~dl~~A~~rv~~G-~ek~~~~~~~~ek~~  406 (647)
                      -+.+-..|...||++++|+.+-= .++--..++|+++..
T Consensus       443 re~gVPVI~n~~ldesvd~~~evi~~r~~~a~~~e~~~~  481 (492)
T PRK12337        443 REEDVPVLDGETLDESADKAVEVVLRYVMVALTPEERGQ  481 (492)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             874998207876677999999999999998459899998


No 356
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.90  E-value=0.0082  Score=39.34  Aligned_cols=139  Identities=31%  Similarity=0.466  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH---
Q ss_conf             5698898528899999999987433567664201233311003787425888999974246---9970205857886---
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV---  218 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~---  218 (647)
                      +.++|..|.+.....-..+-..+.+..|+..+.+.    .|+.|..||||-|+|||+-...   ..||+.+++..+-   
T Consensus       195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAP----LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~  270 (511)
T COG3283         195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAP----LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDA  270 (511)
T ss_pred             CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCC----EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
T ss_conf             12575424477873039999999999865403787----68744888618899998744384558973676447796667


Q ss_pred             ---HHHH-HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCC-C---CC----C
Q ss_conf             ---4442-0332459999999987378012063235641445578988626889889989985-3032-3---57----7
Q gi|254780545|r  219 ---ELFV-GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGF-E---SS----E  285 (647)
Q Consensus       219 ---~~~~-g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~-~---~~----~  285 (647)
                         |+|. +.|..--.-+|++|-.   --+|+|||--.-+            +-|.  .||-- -||- .   ..    -
T Consensus       271 aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp------------~lQa--KLLRFL~DGtFRRVGee~Ev~v  333 (511)
T COG3283         271 AESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP------------RLQA--KLLRFLNDGTFRRVGEDHEVHV  333 (511)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHCCC---CEEEEEHHHHCCH------------HHHH--HHHHHHCCCCCCCCCCCCEEEE
T ss_conf             677773568887776346340269---7488500332499------------8999--9999862776000377545787


Q ss_pred             CEEEEEECCCC--CCCCHHHCCCCCC
Q ss_conf             82999962981--0088333165642
Q gi|254780545|r  286 GVILIAATNRP--DVLDAALLRPGRF  309 (647)
Q Consensus       286 ~v~vi~aTn~~--~~lD~al~RpgRf  309 (647)
                      +|=||+||.++  +..+     .|+|
T Consensus       334 dVRVIcatq~nL~~lv~-----~g~f  354 (511)
T COG3283         334 DVRVICATQVNLVELVQ-----KGKF  354 (511)
T ss_pred             EEEEEECCCCCHHHHHH-----CCCH
T ss_conf             78999616666999986-----3725


No 357
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.89  E-value=0.045  Score=33.98  Aligned_cols=12  Identities=17%  Similarity=0.326  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999986
Q gi|254780545|r  490 EYATKLARVMVT  501 (647)
Q Consensus       490 ~~AT~iA~~mV~  501 (647)
                      +|=-.|||.++.
T Consensus       457 rQRialARAll~  468 (569)
T PRK10789        457 KQRISIARALLL  468 (569)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999954


No 358
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.88  E-value=0.16  Score=29.96  Aligned_cols=107  Identities=20%  Similarity=0.268  Sum_probs=62.6

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf             31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG  261 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~  261 (647)
                      +=++|.|+-|||||.+-++++.. |.+.+                                     ++..++..||+..|
T Consensus       128 ~~~vl~G~TG~GKT~iL~~L~~~-G~qvi-------------------------------------DLEglAnHRGS~FG  169 (311)
T TIGR03167       128 PLIVLGGMTGSGKTELLHALANA-GAQVL-------------------------------------DLEGLANHRGSSFG  169 (311)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-CCCCC-------------------------------------CHHHHHHCCCCCCC
T ss_conf             76998788887789999999976-99742-------------------------------------58998631465346


Q ss_pred             CCCH----HHHHHHHHHHHHHCCCCCCCCEEE------EEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             8626----889889989985303235778299------99629810088333165642314100013478899999998
Q gi|254780545|r  262 GGND----EREQTLNQLLVEMDGFESSEGVIL------IAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       262 ~~~~----e~~~~ln~ll~~mdg~~~~~~v~v------i~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
                      +-..    -..+-=|.|..++..++....|+|      ||.-.-|+.|=.++.    --.+|.+..|-..=-..|++-|
T Consensus       170 ~~~~~~QPsQk~FEn~l~~~l~~~~~~~~i~vE~ES~~IG~~~iP~~l~~~M~----~a~~i~i~~~le~Rv~~l~~~Y  244 (311)
T TIGR03167       170 ALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDESRRIGRVALPDALFEAMR----AAPLVELEASLEERVERLVEEY  244 (311)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH----CCCEEEEECCHHHHHHHHHHHH
T ss_conf             88889997899999999999981788895699603313057138999999985----1998999899999999999986


No 359
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.84  E-value=0.034  Score=34.86  Aligned_cols=14  Identities=7%  Similarity=0.159  Sum_probs=7.2

Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             76668667789999
Q gi|254780545|r  396 STAMTEEEKKITAY  409 (647)
Q Consensus       396 ~~~~~~~ek~~vAy  409 (647)
                      +..+|--||.|+|.
T Consensus       474 G~~LSGGQrQRiai  487 (575)
T PRK11160        474 GRQLSGGEQRRLGI  487 (575)
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             99599999999999


No 360
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.83  E-value=0.057  Score=33.24  Aligned_cols=35  Identities=40%  Similarity=0.760  Sum_probs=28.7

Q ss_pred             HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             642012333110--03787425888999974246997
Q gi|254780545|r  174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~  208 (647)
                      ..+|.-+|+|.+  +|||+|+|||.+|--++.+|..|
T Consensus        51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~   87 (279)
T COG0468          51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP   87 (279)
T ss_pred             HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             7746886553589984688765466899998886537


No 361
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.82  E-value=0.023  Score=36.08  Aligned_cols=143  Identities=26%  Similarity=0.432  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf             2256988985288999999999-874-33567664201233311003787425888999974246997020585788644
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIV-DFL-CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL  220 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v-~~l-~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~  220 (647)
                      ...-|.|.-|.++-.- .+++. .|| ---.+--.-|.+..--.+|.|+-|+|||-+.++++.+    ||.-+-..+   
T Consensus        13 i~~l~~~~~g~~d~~~-~~~~~~~wligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~----~~~d~~~~~---   84 (198)
T pfam05272        13 IETLFIDYLGAEDSLY-TREVSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGE----WFTDSIRSF---   84 (198)
T ss_pred             HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----HCCCCCCCC---
T ss_conf             9999999629997599-99999999999999997789767767899889867899999997377----515655576---


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCC---------CCEEEE
Q ss_conf             42033245999999998737801206323564144557898862688988998998-53032357---------782999
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-EMDGFESS---------EGVILI  290 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-~mdg~~~~---------~~v~vi  290 (647)
                             .=++........  -|+-+||++.+.+ +         +.+ .+-++|+ .-|-|...         ..-+.|
T Consensus        85 -------~~kD~~~~l~~~--wi~el~El~~~~k-~---------~~~-~lK~fls~~~d~~R~pY~~~~~~~pR~~vfi  144 (198)
T pfam05272        85 -------EGKDAYEKLQGV--WIVEIAELDGFSK-A---------EVE-AIKAFITRTVDSFRAPYGRRAESFPRQCVFV  144 (198)
T ss_pred             -------CCCHHHHHHHHH--HHHHHHHHHHCCH-H---------HHH-HHHHHHCCHHHCCHHCCCCCCEECCEEEEEE
T ss_conf             -------773899999987--8732598751365-3---------299-9999845413123102235640065479999


Q ss_pred             EECCCCCC-CCHHHCCCCCCCCEEEEC
Q ss_conf             96298100-883331656423141000
Q gi|254780545|r  291 AATNRPDV-LDAALLRPGRFDRQITVP  316 (647)
Q Consensus       291 ~aTn~~~~-lD~al~RpgRfd~~i~~~  316 (647)
                      |+||..+. -||.==|  ||= .|.|+
T Consensus       145 gTtN~~~~L~D~TGnR--RF~-pi~v~  168 (198)
T pfam05272       145 GTTNRDEFLKDPTGNR--RFW-PVKVG  168 (198)
T ss_pred             EECCCCCCCCCCCCCE--EEE-EEEEC
T ss_conf             9638876557999981--689-99968


No 362
>cd04154 Arl2 Arl2 subfamily.  Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity.  Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix.  The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI.  Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different.  In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport.  In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.81  E-value=0.012  Score=38.05  Aligned_cols=105  Identities=20%  Similarity=0.354  Sum_probs=53.9

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf             11003787425888999974246997020585788---------644420332459999999987378012063235641
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF---------VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG  253 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~---------~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~  253 (647)
                      -+++.|+||+|||.|-+.+.++--.....+.|-.+         +..|---|..+.|.+...--+.+-+|||+  +|+--
T Consensus        16 KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~~a~~ii~V--vD~td   93 (173)
T cd04154          16 RILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV--VDSSD   93 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE--EECCC
T ss_conf             8999989997889999998399989726705777899998999999996688602005899972266538999--85565


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             44557898862688988998998530323577829999629810088
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      +.       .-++....+.++|.+-..  .+..++|+|  |..|.-+
T Consensus        94 ~~-------~~~~~~~~l~~ll~~~~~--~~~pili~~--NK~Dl~~  129 (173)
T cd04154          94 RL-------RLDDCKRELKELLQEERL--AGATLLILA--NKQDLPG  129 (173)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHC--CCCCEEEEE--ECCCCCC
T ss_conf             78-------899999999999863541--598479998--7656777


No 363
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=95.78  E-value=0.05  Score=33.68  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             HHHHHCCCC-----CCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
Q ss_conf             664201233-----31100378742588899997424----699702058578864442033245999999998737801
Q gi|254780545|r  173 FKRLGGRIP-----HGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI  243 (647)
Q Consensus       173 ~~~~g~~~p-----~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~i  243 (647)
                      |+--|..+|     +.+|++|-+|||||-+-+.+...    -+...++=.+-+|++.|+..+-.-|=+=|   -+.+|+=
T Consensus       172 i~i~glpl~k~sE~qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~~FY~p~~DiILNPf---DaRc~~W  248 (732)
T PRK13700        172 IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNPL---DARCAAW  248 (732)
T ss_pred             CEECCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCEEECCH---HHCCCCC
T ss_conf             2467866676520312677468888899999999999997299589993998533976398888654820---1058987


Q ss_pred             EEHHHH
Q ss_conf             206323
Q gi|254780545|r  244 VFVDEI  249 (647)
Q Consensus       244 ifiDei  249 (647)
                      -+++|+
T Consensus       249 s~w~E~  254 (732)
T PRK13700        249 DLWKEC  254 (732)
T ss_pred             CHHHHH
T ss_conf             557660


No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.78  E-value=0.036  Score=34.71  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=17.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCC
Q ss_conf             100378742588899997424
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e  204 (647)
                      +-|.|.||.|||.||+++...
T Consensus         2 iW~tGLsgsGKTTlA~~l~~~   22 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEK   22 (149)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             898799999999999999999


No 365
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.77  E-value=0.0052  Score=40.77  Aligned_cols=224  Identities=24%  Similarity=0.309  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf             22569889852889999999998743356766420123331100378742588899997424699702058578864442
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV  222 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~  222 (647)
                      .+++.+|..=-+..|+.|.+                 --+|+|..||||.|||.+|.|+|.     |+.-.|- .+    
T Consensus       242 vk~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAe-----fy~~~Gk-iV----  294 (604)
T COG1855         242 VKLSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAE-----FYASQGK-IV----  294 (604)
T ss_pred             EEEEHHHCCCCHHHHHHHHH-----------------HHCCEEEECCCCCCHHHHHHHHHH-----HHHHCCC-EE----
T ss_conf             99605542879899999886-----------------416469956999974689999999-----9986696-88----


Q ss_pred             HCCHHHHHHH--HHHHHHHCCHHEEHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCCC
Q ss_conf             0332459999--99998737801206323-564144557898862688988998998530-3235778299996298100
Q gi|254780545|r  223 GVGASRVRDM--FEQAKNNSPCIVFVDEI-DAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFESSEGVILIAATNRPDV  298 (647)
Q Consensus       223 g~g~~~vr~l--f~~a~~~~p~iifiDei-da~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~~~~~v~vi~aTn~~~~  298 (647)
                      - +-..=|||  =...-+.+|---=..+. |.+--.|-.-.  --||-..| +.|...-| .+.+-.-|=|+-||.-.|.
T Consensus       295 K-TmEsPRDl~v~~eITQYs~l~g~me~t~DiLLLvRPDYT--IyDEmR~t-~DF~vyaDmRLAGVGMVGVVHATrpIDA  370 (604)
T COG1855         295 K-TMESPRDLQVSPEITQYSPLEGDMEKTADILLLVRPDYT--IYDEMRKT-EDFQVYADLRLAGVGMVGVVHATRPIDA  370 (604)
T ss_pred             E-ECCCCCCCCCCHHHHHCCCCCCCHHHHCCEEEEECCCCE--EHHHHHCC-CCEEEEEEEECCCCCEEEEEECCCHHHH
T ss_conf             6-324751356886663206445645552337999658845--10334156-6616766500115754768961780589


Q ss_pred             CCHHHCCCCCCCCEEEECH-HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8833316564231410001-347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r  299 LDAALLRPGRFDRQITVPN-PDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       299 lD~al~RpgRfd~~i~~~~-P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
                      +-       ||=.++++++ |..-+-    -++.++-....=.+++...+--.|++-+||+.              ..|.
T Consensus       371 iQ-------R~igRVELG~IPqIvDT----VIfI~~G~V~kVy~ls~tVKVP~Gm~EeDLAR--------------PVIe  425 (604)
T COG1855         371 IQ-------RFIGRVELGMIPQIVDT----VIFIKDGEVAKVYELSYTVKVPTGMTEEDLAR--------------PVIE  425 (604)
T ss_pred             HH-------HHHCCEEECCCCCCEEE----EEEEECCEEEEEEEEEEEEECCCCCCHHHHCC--------------CEEE
T ss_conf             99-------86440631466412268----99981881889999999997678878677158--------------5389


Q ss_pred             HHHHHHH---HHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf             4568999---7501368655676668667---78999999999999985058
Q gi|254780545|r  378 MQEFEDA---KDKILMGAERRSTAMTEEE---KKITAYHEAGHAVVACHVPK  423 (647)
Q Consensus       378 ~~dl~~A---~~rv~~G~ek~~~~~~~~e---k~~vAyHEAGHAlva~~l~~  423 (647)
                      ..||+.-   ++-..+|-+---..+...+   .+..|+.+--.++ ..++|+
T Consensus       426 VrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~~~i-~r~~p~  476 (604)
T COG1855         426 VRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIEREI-KRYLPG  476 (604)
T ss_pred             EEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCC
T ss_conf             765036854689997164799997568777726677999999999-974799


No 366
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.75  E-value=0.023  Score=36.04  Aligned_cols=143  Identities=27%  Similarity=0.486  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------H--HHHHCCCCCC--EEEC
Q ss_conf             5698898528899999999987433567---------------------------------6--6420123331--1003
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK---------------------------------F--KRLGGRIPHG--VLLV  187 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~---------------------------------~--~~~g~~~p~g--~ll~  187 (647)
                      -.|+...+--.+-..|++....++.++.                                 +  ..+.-+++.|  +=..
T Consensus       283 ~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~WsqPivPk~~l~gi~F~~~aGe~laII  362 (556)
T TIGR01842       283 GGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKKWSQPIVPKPTLRGISFAIQAGEALAII  362 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCEEEEE
T ss_conf             88888999999999999999857888754578898636888776510786313578977614227862156377458887


Q ss_pred             CCCCHHHHHHHHHHHCCCCCC--EECCCHHHH------------------HHHHHHCC------------------HHH-
Q ss_conf             787425888999974246997--020585788------------------64442033------------------245-
Q gi|254780545|r  188 GPPGTGKTLLARAVAGEANVP--FFTISGSDF------------------VELFVGVG------------------ASR-  228 (647)
Q Consensus       188 GppGtGKTlla~a~a~e~~~~--f~~~~~s~~------------------~~~~~g~g------------------~~~-  228 (647)
                      ||+|+|||-|||-+-|-.-..  -+-.+|.|+                  +|.|-|-=                  |+| 
T Consensus       363 GPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAkl  442 (556)
T TIGR01842       363 GPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAKL  442 (556)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             47865258898788721013565336403344023753658801547985050767676402446887887899999976


Q ss_pred             --HHHH--------------------------HHHHHH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             --9999--------------------------999987--3780120632356414455789886268898899899853
Q gi|254780545|r  229 --VRDM--------------------------FEQAKN--NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM  278 (647)
Q Consensus       229 --vr~l--------------------------f~~a~~--~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m  278 (647)
                        |+||                          -..||+  -.||+|-+||=+|       +.   .+|-||-|-+=|.++
T Consensus       443 AGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNs-------NL---D~~GE~AL~~Ai~~l  512 (556)
T TIGR01842       443 AGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNS-------NL---DEEGEQALANAIKAL  512 (556)
T ss_pred             HCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-------CC---CHHHHHHHHHHHHHH
T ss_conf             03035751696885443137777786146899999998717983787328898-------76---617899999999999


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCH
Q ss_conf             03235778299996298100883
Q gi|254780545|r  279 DGFESSEGVILIAATNRPDVLDA  301 (647)
Q Consensus       279 dg~~~~~~v~vi~aTn~~~~lD~  301 (647)
                          +..|+.||-.|.||..|.-
T Consensus       513 ----K~rg~tvv~itHRp~lL~~  531 (556)
T TIGR01842       513 ----KARGITVVVITHRPSLLGL  531 (556)
T ss_pred             ----HHCCCEEEEEECHHHHHHH
T ss_conf             ----8679728998410689999


No 367
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.73  E-value=0.0059  Score=40.38  Aligned_cols=29  Identities=48%  Similarity=0.732  Sum_probs=24.5

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             20123331--100378742588899997424
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      +-..+++|  +-|.||+|||||.+-|.|||=
T Consensus        24 isl~i~~Gef~tlLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             1445448868999899888889999999677


No 368
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=95.71  E-value=0.0046  Score=41.14  Aligned_cols=84  Identities=27%  Similarity=0.373  Sum_probs=55.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf             10037874258889999742469-----9702058578864442033245999999998737801206323564144557
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI  258 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~  258 (647)
                      +.|.|+.|||||..|.+++.+.+     ++|  +.|-+|--      +++|       +|.+-=|-.=||      .|-.
T Consensus         1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~y--ieGDdLHP------~~Ni-------~KMs~GiPL~Dd------DR~p   59 (175)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKY--IEGDDLHP------AANI-------EKMSRGIPLNDD------DRWP   59 (175)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCCCC------HHHH-------HHHCCCCCCCCC------CCHH
T ss_conf             9676027862889999999985431578875--68866678------7779-------873178888701------2043


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC
Q ss_conf             89886268898899899853032357782999962981008833316
Q gi|254780545|r  259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR  305 (647)
Q Consensus       259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R  305 (647)
                              +=+.||.-++.+..-+...++||.|         +||-|
T Consensus        60 --------WL~~l~~~~~~~~~~~~~~~~~~~C---------SALKr   89 (175)
T TIGR01313        60 --------WLKNLADALAQAAAKNKVHLVIITC---------SALKR   89 (175)
T ss_pred             --------HHHHHHHHHHHHHHCCCCCCEEEEE---------ECCHH
T ss_conf             --------7999999999998457745447884---------01113


No 369
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.71  E-value=0.037  Score=34.63  Aligned_cols=133  Identities=28%  Similarity=0.374  Sum_probs=81.8

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHH---HHHHHHH----C--CHHHHHH-HHHHHHHHCCHHEEHHH
Q ss_conf             23331100378742588899997424699702058578---8644420----3--3245999-99999873780120632
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSD---FVELFVG----V--GASRVRD-MFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~---~~~~~~g----~--g~~~vr~-lf~~a~~~~p~iifiDe  248 (647)
                      ..-|++||.|.||.|||-|-.|+|.+.|-..+-+.-|+   ++..|..    +  |+-+-++ -|-.|-+.. --|.+||
T Consensus      1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271        1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred             HCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHHCC-CEEEEEH
T ss_conf             528854622799866789999999974572478632011028987377887556761674246899985349-8799624


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC------------CCCCCCCEEEEEECCCC------CCCCHHHCCCCCCC
Q ss_conf             3564144557898862688988998998530------------32357782999962981------00883331656423
Q gi|254780545|r  249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMD------------GFESSEGVILIAATNRP------DVLDAALLRPGRFD  310 (647)
Q Consensus       249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~md------------g~~~~~~v~vi~aTn~~------~~lD~al~RpgRfd  310 (647)
                      |.- +.             ..+|-.|=.++|            -|+-..+..|.||-|--      ..|...++-  ||-
T Consensus      1620 iNL-aS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271        1620 INL-AS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred             HHH-HH-------------HHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCHHCCCCCCCCCHHHHH--HHH
T ss_conf             103-27-------------88998889988501442563113325216870554204811027985668788862--211


Q ss_pred             CEEEECHHHHHHHHHHHHH
Q ss_conf             1410001347889999999
Q gi|254780545|r  311 RQITVPNPDIVGREHILMV  329 (647)
Q Consensus       311 ~~i~~~~P~~~~r~~i~~~  329 (647)
                      + |+++.-..++-..|.+.
T Consensus      1684 v-V~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271        1684 V-VKMDGLTTDDITHIANK 1701 (4600)
T ss_pred             E-EEECCCCCCHHHHHHHH
T ss_conf             5-77503453009999985


No 370
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70  E-value=0.012  Score=38.03  Aligned_cols=68  Identities=26%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             CCCCC--EEECCCCCHHHHHHHHHHHCCCCC-----CEE--CCC-HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf             23331--100378742588899997424699-----702--058-57886444203324599999999873780120632
Q gi|254780545|r  179 RIPHG--VLLVGPPGTGKTLLARAVAGEANV-----PFF--TIS-GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       179 ~~p~g--~ll~GppGtGKTlla~a~a~e~~~-----~f~--~~~-~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe  248 (647)
                      .+++|  +=+.||.|||||.|.|.++|...-     .+-  .++ -++.+++-   |-.|-|-.+..|-..-|-++++||
T Consensus        21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~~~~~~pq~~~LS---GGqrQRv~iAral~~~p~lllLDE   97 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS---GGELQRVAIAAALLRNATFYLFDE   97 (177)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCEECCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             55899899998999999999999996886788994666686122155515079---899999999999823999999748


Q ss_pred             H
Q ss_conf             3
Q gi|254780545|r  249 I  249 (647)
Q Consensus       249 i  249 (647)
                      -
T Consensus        98 P   98 (177)
T cd03222          98 P   98 (177)
T ss_pred             C
T ss_conf             8


No 371
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.63  E-value=0.11  Score=31.14  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=25.8

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .+-..+++|  +.|.||.|.|||.|-|+++|-..
T Consensus        23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~   56 (293)
T COG1131          23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             EEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             0499982895999989999989999999967977


No 372
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli.  The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane.  HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB.  This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport.  Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.63  E-value=0.066  Score=32.79  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=24.6

Q ss_pred             HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             766420123331--100378742588899997424
Q gi|254780545|r  172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      -+..+-..+|+|  +-+.||+|+|||-|++.+.|-
T Consensus        17 ~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~gl   51 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             25150899879999999999998599999999677


No 373
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=95.63  E-value=0.029  Score=35.32  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHH---H--------CCHHHHHHHHHHH---HHHCCHHEEH
Q ss_conf             311003787425888999974246997-02058578864442---0--------3324599999999---8737801206
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFV---G--------VGASRVRDMFEQA---KNNSPCIVFV  246 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~---g--------~g~~~vr~lf~~a---~~~~p~iifi  246 (647)
                      .-|||.||+|.|||.|---+....-++ .-++. +.+.+.+.   |        -|-.|+|..|...   ..++-+|||.
T Consensus         4 ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~-~n~~~~~~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~~~~gIVfV   82 (181)
T pfam09439         4 PAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQE-PSAAYKYMNNKGNSLTLIDFPGHVKLRYKLLETLKDSSSLRGLVFV   82 (181)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCEECCCC-CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             869998689998999999997599487588867-8640687516896689998899689999999864300264499999


No 374
>KOG2543 consensus
Probab=95.60  E-value=0.15  Score=30.19  Aligned_cols=137  Identities=21%  Similarity=0.288  Sum_probs=81.8

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH------HHHH-C------CH------HH---HHHHHHH-
Q ss_conf             23331100378742588899997424699702058578864------4420-3------32------45---9999999-
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE------LFVG-V------GA------SR---VRDMFEQ-  235 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~------~~~g-~------g~------~~---vr~lf~~-  235 (647)
                      ..|.-+.+||-.|||||.+.+++-.+++.|+..++.-+...      ...- +      |.      -.   .-.+|.+ 
T Consensus        28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~  107 (438)
T KOG2543          28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW  107 (438)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66515799614787455999999860378630541577516799999999873567874055542799999999999844


Q ss_pred             -HHHHC--CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC-C
Q ss_conf             -98737--8012063235641445578988626889889989985303235778299996298100883331656423-1
Q gi|254780545|r  236 -AKNNS--PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD-R  311 (647)
Q Consensus       236 -a~~~~--p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd-~  311 (647)
                       |..+.  --.|++|-+|++..   .+        ...+++|+.--.-...+.-+|+.-++-.+   +.=+.|-|-++ -
T Consensus       108 ~~~t~~d~~~~liLDnad~lrD---~~--------a~ll~~l~~L~el~~~~~i~iils~~~~e---~~y~~n~g~~~i~  173 (438)
T KOG2543         108 PAATNRDQKVFLILDNADALRD---MD--------AILLQCLFRLYELLNEPTIVIILSAPSCE---KQYLINTGTLEIV  173 (438)
T ss_pred             HHHHCCCCEEEEEECCHHHHHC---CC--------HHHHHHHHHHHHHHCCCCEEEEEECCCCH---HHHHCCCCCCCCE
T ss_conf             7764467449999747776630---65--------07889999899873777369998326667---7752146777864


Q ss_pred             EEEECHHHHHHHHHHHHH
Q ss_conf             410001347889999999
Q gi|254780545|r  312 QITVPNPDIVGREHILMV  329 (647)
Q Consensus       312 ~i~~~~P~~~~r~~i~~~  329 (647)
                      .+++|-++.++-..|+..
T Consensus       174 ~l~fP~Ys~~e~~~Il~~  191 (438)
T KOG2543         174 VLHFPQYSVEETQVILSR  191 (438)
T ss_pred             EEECCCCCHHHHHHHHHC
T ss_conf             785387788999999841


No 375
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2.  A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.58  E-value=0.043  Score=34.13  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=25.1

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             66420123331--1003787425888999974246
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +..+-.++++|  +-+.||.|+|||.|.+.+.|-.
T Consensus        20 L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~   54 (220)
T cd03245          20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             53459998799999999999985999999996725


No 376
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56  E-value=0.0083  Score=39.30  Aligned_cols=69  Identities=32%  Similarity=0.525  Sum_probs=39.3

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCC---CEEC-----CC-HHHHHHHHHHC-------------CHHHHHHHHHHHHHH
Q ss_conf             31100378742588899997424699---7020-----58-57886444203-------------324599999999873
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANV---PFFT-----IS-GSDFVELFVGV-------------GASRVRDMFEQAKNN  239 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~---~f~~-----~~-~s~~~~~~~g~-------------g~~~vr~lf~~a~~~  239 (647)
                      -..|+.||||||||.|-|-+|.-...   .|..     +. -|++--...|+             ++-+-.-+....|..
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm  217 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM  217 (308)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             24699659988707799999998631511267732899715004303435886032322101046561788899999954


Q ss_pred             CCHHEEHHHHH
Q ss_conf             78012063235
Q gi|254780545|r  240 SPCIVFVDEID  250 (647)
Q Consensus       240 ~p~iifiDeid  250 (647)
                      +|-++.+|||-
T Consensus       218 ~PEViIvDEIG  228 (308)
T COG3854         218 SPEVIIVDEIG  228 (308)
T ss_pred             CCCEEEEECCC
T ss_conf             99579983436


No 377
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=95.52  E-value=0.024  Score=36.00  Aligned_cols=121  Identities=23%  Similarity=0.312  Sum_probs=64.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH-HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf             1003787425888999974246997020585788-644420332459999999987378012063235641445578988
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF-VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG  262 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~-~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~  262 (647)
                      .|++||.|+|||-+|-++|.+.|.|.++..--++ .++-+|.|---.-+|..      --=|++|+       |.-.  .
T Consensus         4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~El~g------T~RiYL~~-------R~l~--~   68 (232)
T pfam01745         4 YLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQG------TRRIYLDN-------RPLS--E   68 (232)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCC------CCEEEECC-------CCCC--C
T ss_conf             8997887777169999999995997796203443001136778999799657------52698616-------7343--4


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC----CCCCCC-EEEECHHHHHH
Q ss_conf             6268898899899853032357782999962981008833316----564231-41000134788
Q gi|254780545|r  263 GNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR----PGRFDR-QITVPNPDIVG  322 (647)
Q Consensus       263 ~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R----pgRfd~-~i~~~~P~~~~  322 (647)
                      |+-.-++....|+.+.+......|||+=|-.  ...| .++.+    .-+|-- ...+.+||.+.
T Consensus        69 Gii~a~eA~~~Li~~V~~~~~~~glILEGGS--ISLl-~~ma~~~~w~~~f~w~v~r~~l~d~~~  130 (232)
T pfam01745        69 GIIDAEEAHDRLIAEVTSHKDEGGVILEGGS--ISLL-KRMAQSPYWNAGFPWHVKRMRLPDRDV  130 (232)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCEEEECCH--HHHH-HHHHHCHHHCCCCEEEEEEEECCCHHH
T ss_conf             6648899999999999604667866872750--9999-999757341489648999974798789


No 378
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.51  E-value=0.074  Score=32.44  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=52.0

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf             23331100378742588899997424699702058578864442033245999999998737801206323564144557
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI  258 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~  258 (647)
                      .-|.=+-|.|.||.|||.||+++...                           |+    +....+++||- |.+-..-+.
T Consensus        22 ~kg~viWlTGLSGSGKTTlA~~L~~~---------------------------L~----~~~~~~~~LDG-D~lR~~l~~   69 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEA---------------------------LH----ELGVHTYLLDG-DNVRHGLCS   69 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH---------------------------HH----HCCCCEEEECH-HHHHHHHCC
T ss_conf             99869998799999889999999999---------------------------99----75997599777-999874366


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC----CCCCCEEEECHHH
Q ss_conf             898862688988998998530323577829999629810088333165----6423141000134
Q gi|254780545|r  259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP----GRFDRQITVPNPD  319 (647)
Q Consensus       259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp----gRfd~~i~~~~P~  319 (647)
                      ..+-+-.+|..- ..-+.++-.+-.+.|++||+++--|-.-+-...|-    ++| ..|++.-|=
T Consensus        70 dlgfs~~dR~~n-~~r~~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~~~~~f-~EIyl~~~l  132 (198)
T PRK03846         70 DLGFSDADRKEN-IRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEF-IEVFVDTPL  132 (198)
T ss_pred             CCCCCHHHHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCE-EEEEECCCH
T ss_conf             789899999999-999999999998589836641478879999999986787757-999943889


No 379
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.49  E-value=0.073  Score=32.47  Aligned_cols=13  Identities=23%  Similarity=0.031  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999899999999
Q gi|254780545|r  559 IIQEKNDNFVAIA  571 (647)
Q Consensus       559 iL~~n~~~l~~la  571 (647)
                      |+-.||-..-+-|
T Consensus       524 iiIaHRlsti~~a  536 (585)
T PRK13657        524 FIIAHRLSTVRNA  536 (585)
T ss_pred             EEEECCHHHHHHC
T ss_conf             9960688889969


No 380
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957   The bacterial dnaA protein , ,  plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC).   DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=95.49  E-value=0.22  Score=28.96  Aligned_cols=141  Identities=23%  Similarity=0.357  Sum_probs=91.7

Q ss_pred             HCC-CCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             012-33311003787425888999974246-----997020585788644420332459999999987378012063235
Q gi|254780545|r  177 GGR-IPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       177 g~~-~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeid  250 (647)
                      .++ .-.-+++||-.|.|||.+..++.+..     ....++++...|..-++-.-...-.+-|..-.+.. -.+.+|++.
T Consensus       176 p~~p~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~l~dd~~  254 (493)
T TIGR00362       176 PGKPAYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNKLDDFKKKYRSL-DFLLIDDIQ  254 (493)
T ss_pred             CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHH
T ss_conf             7876656247744754215678777643444306773278850146789999875200168888876311-123111047


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC---CCCHHHCCCCCCC--CEEEECHHHHHHHHH
Q ss_conf             64144557898862688988998998530323577829999629810---0883331656423--141000134788999
Q gi|254780545|r  251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD---VLDAALLRPGRFD--RQITVPNPDIVGREH  325 (647)
Q Consensus       251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~---~lD~al~RpgRfd--~~i~~~~P~~~~r~~  325 (647)
                      -+..+...     ..|--.+.|.|.      ..+.. +++.....|.   .+...|.-  ||.  ....+..||.+.|..
T Consensus       255 ~~~~~~~~-----~~~~~~~~~~l~------~~~~~-~~~~~d~~p~~~~~~~~~l~~--~~~~g~~~~~~~p~~~~~~~  320 (493)
T TIGR00362       255 FLAGKEKT-----QEEFFHTFNALH------EDGKQ-IVLTSDRSPKEIPGLEDRLKS--RFGWGLTADIEPPDLETRLA  320 (493)
T ss_pred             HHHCCCCH-----HHHHHHHHHHHH------HCCCE-EEEECCCCCCHHCHHHHHHHH--HHHCCCEEECCCCCHHHHHH
T ss_conf             64135203-----688888888774------06852-788516662010004677765--43014100024652357899


Q ss_pred             HHHHHHC
Q ss_conf             9999854
Q gi|254780545|r  326 ILMVHSR  332 (647)
Q Consensus       326 i~~~~~~  332 (647)
                      |+.....
T Consensus       321 ~~~~~~~  327 (493)
T TIGR00362       321 ILKKKAE  327 (493)
T ss_pred             HHHHHHH
T ss_conf             9886544


No 381
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.46  E-value=0.066  Score=32.81  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=7.6

Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             76668667789999
Q gi|254780545|r  396 STAMTEEEKKITAY  409 (647)
Q Consensus       396 ~~~~~~~ek~~vAy  409 (647)
                      +..+|--+|.++|.
T Consensus       483 G~~LSGGQrQRiai  496 (588)
T PRK11174        483 AAGLSVGQAQRLAL  496 (588)
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             88779999999999


No 382
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.45  E-value=0.11  Score=31.06  Aligned_cols=179  Identities=15%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCC-----CCC---------EECCCHHHHHHHHHH---CCHHHHHHHHHHHHH---
Q ss_conf             233311003787425888999974246-----997---------020585788644420---332459999999987---
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEA-----NVP---------FFTISGSDFVELFVG---VGASRVRDMFEQAKN---  238 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~---------f~~~~~s~~~~~~~g---~g~~~vr~lf~~a~~---  238 (647)
                      ..|..+||.|++||||-=++.++|...     .-|         +..-+.+||...+-.   .+-..+|++-...-.   
T Consensus         6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~   85 (262)
T PRK05818          6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   85 (262)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             89850566448776469999999998622899999988862786755899977997166455779899999999821140


Q ss_pred             --HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf             --378012063235641445578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r  239 --NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP  316 (647)
Q Consensus       239 --~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~  316 (647)
                        ..--|++|+++|.+-              ++.-|.||--+.  +...+++.|-.|+.++.|=|-++-     |++...
T Consensus        86 e~~g~KV~II~~Ae~Mt--------------~~AANALLKtLE--EPp~nt~fIL~t~~~~~LLPTIrS-----RC~~~~  144 (262)
T PRK05818         86 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS-----RCVQYV  144 (262)
T ss_pred             CCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHHH-----HCCCCC
T ss_conf             02884899987778749--------------999999998612--898783899973881437308887-----701446


Q ss_pred             HHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1347889999999854887----773211024544120379899999999987645532024210456899
Q gi|254780545|r  317 NPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED  383 (647)
Q Consensus       317 ~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~  383 (647)
                      + -..+.+..++++.+...    .-.+..++.++.....-|=.|+-++...+.    -++...++..+...
T Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i----~~~n~~~~~~~~~~  210 (262)
T PRK05818        145 V-LSKEKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLI----NKKNKLIQIHKAWI  210 (262)
T ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCEEHHHHHH
T ss_conf             6-643466788887408889876410110799998861676888999999998----75688433999999


No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity.  In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.  Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family.  The ATP-binding domain shows the highest similarity between all members of the ABC transporter family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44  E-value=0.12  Score=30.85  Aligned_cols=108  Identities=22%  Similarity=0.363  Sum_probs=56.1

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-----CEE--------------------------CCCHHHHHHHHH
Q ss_conf             20123331--100378742588899997424699-----702--------------------------058578864442
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-----PFF--------------------------TISGSDFVELFV  222 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-----~f~--------------------------~~~~s~~~~~~~  222 (647)
                      .-..+++|  +-|.||.|+|||-|.|.++|-..-     -+.                          ..+.-+.++.-.
T Consensus        19 vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSg   98 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG   98 (173)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCH
T ss_conf             08788799399998789979999999997685778788999999988684888657899956876671267789863398


Q ss_pred             HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  223 GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       223 g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                         -.+-|-.+..|-...|-|+++||--     .|-..    ..+ +.+-++|.++   .. +|.-||-+|...+.+.
T Consensus        99 ---G~kqrv~ia~al~~~p~lllLDEPt-----~gLD~----~~~-~~i~~~i~~l---~~-~g~tvi~~tH~l~~~~  159 (173)
T cd03230          99 ---GMKQRLALAQALLHDPELLILDEPT-----SGLDP----ESR-REFWELLREL---KK-EGKTILLSSHILEEAE  159 (173)
T ss_pred             ---HHHHHHHHHHHHHCCCCEEEECCCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEECCCHHHHH
T ss_conf             ---9999999999996499999990886-----57999----999-9999999999---96-8999999928389999


No 384
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.43  E-value=0.057  Score=33.24  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=25.3

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6420123331--10037874258889999742469
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+-.++++|  +-++||.|+|||-|++.++|...
T Consensus        54 k~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~   88 (282)
T cd03291          54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE   88 (282)
T ss_pred             ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             16489984999999999999819999999957872


No 385
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.35  E-value=0.069  Score=32.66  Aligned_cols=33  Identities=36%  Similarity=0.577  Sum_probs=26.1

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6420123331--10037874258889999742469
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+...+++|  +-+.||.|+|||-|.++++|-..
T Consensus        16 ~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~   50 (180)
T cd03214          16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             ECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             04377886997999998999889999999957989


No 386
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.34  E-value=0.049  Score=33.72  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=13.8

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             0123331--100378742588899997424
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      -..+++|  +-+.||.|+|||.|++.+.|-
T Consensus        34 s~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl   63 (226)
T cd03248          34 SFTLHPGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             899829999999999998499999999645


No 387
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=95.32  E-value=0.042  Score=34.21  Aligned_cols=132  Identities=28%  Similarity=0.485  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-----EECCCCCHHHH---H------------------
Q ss_conf             225698898528899999999987433567664201233311-----00378742588---8------------------
Q gi|254780545|r  143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGV-----LLVGPPGTGKT---L------------------  196 (647)
Q Consensus       143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~-----ll~GppGtGKT---l------------------  196 (647)
                      .+|+|==..+..++++=++|+-+-|++|+|-      +|-|.     ||+-||=--|-   |                  
T Consensus        65 GGv~YiP~~~~~~~~~fv~~l~~~l~~s~Ri------~PGgflY~~Dll~~Psi~ski~~ila~~F~d~~ID~V~TV~TK  138 (269)
T TIGR01743        65 GGVKYIPEVSEKEAKEFVEELCEKLSESERI------LPGGFLYLTDLLFKPSILSKIGKILASVFIDKEIDAVMTVETK  138 (269)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHCCCCCC------CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             9705845646045688999999862288840------3774755534541781577788887543268557878995218


Q ss_pred             ---HHHHHHCCCCCCEECCC-------HHHHHH-HHHHCCH-HHHHHHHHHHHH---HCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf             ---99997424699702058-------578864-4420332-459999999987---37801206323564144557898
Q gi|254780545|r  197 ---LARAVAGEANVPFFTIS-------GSDFVE-LFVGVGA-SRVRDMFEQAKN---NSPCIVFVDEIDAVGRHRGIGLG  261 (647)
Q Consensus       197 ---la~a~a~e~~~~f~~~~-------~s~~~~-~~~g~g~-~~vr~lf~~a~~---~~p~iifiDeida~~~~r~~~~~  261 (647)
                         ||-++|.-.+|||+-+.       || +|+ -||--+. .||+.+| .||+   ..--++|||++=     |+    
T Consensus       139 GvPLA~~~A~~LnV~lvivRkD~kvTEGS-tVSiNYVSGssG~~I~~M~-LarrSLk~GS~vL~vDDFm-----ka----  207 (269)
T TIGR01743       139 GVPLAYAVAKVLNVPLVIVRKDSKVTEGS-TVSINYVSGSSGDRIQKMS-LARRSLKKGSKVLIVDDFM-----KA----  207 (269)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCEECCC-EEEEEEEECCCCHHHHHHH-HHHHHHHHCCEEEEEECCC-----CC----
T ss_conf             82389899876496179998468121053-2899556768743678888-8888886089089995355-----54----


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCC
Q ss_conf             86268898899899853032357-7829999629810
Q gi|254780545|r  262 GGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPD  297 (647)
Q Consensus       262 ~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~  297 (647)
                      ||      |+|-|...|+-|+.+ -||=|+.+|..++
T Consensus       208 GG------T~~Gm~~LL~EFda~l~GiGVli~~~~~~  238 (269)
T TIGR01743       208 GG------TVKGMIELLKEFDAELAGIGVLIDNEESE  238 (269)
T ss_pred             CC------CHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             87------02678888876271102322133235531


No 388
>PRK09401 reverse gyrase; Reviewed
Probab=95.30  E-value=0.26  Score=28.52  Aligned_cols=10  Identities=30%  Similarity=0.717  Sum_probs=5.0

Q ss_pred             CCCEEECCCC
Q ss_conf             6733404787
Q gi|254780545|r  509 LGKVSYEEGQ  518 (647)
Q Consensus       509 lG~i~~~~~~  518 (647)
                      .|+++|-..+
T Consensus       916 ~GLITYmRTD  925 (1176)
T PRK09401        916 LGLITYHRTD  925 (1176)
T ss_pred             CCEEECCCCC
T ss_conf             7803325889


No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.27  E-value=0.01  Score=38.63  Aligned_cols=15  Identities=13%  Similarity=0.251  Sum_probs=9.3

Q ss_pred             CCCHHHHHHHHHCCC
Q ss_conf             882799999997798
Q gi|254780545|r   67 LVGSKLLDKLQSKDI   81 (647)
Q Consensus        67 ~~~~~l~~~L~e~~V   81 (647)
                      .....|++.|...+.
T Consensus        68 ~w~~~~~~aL~~~d~   82 (604)
T COG4178          68 DWNGPFYNALARRDL   82 (604)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             434378999998558


No 390
>KOG3928 consensus
Probab=95.27  E-value=0.016  Score=37.31  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=26.8

Q ss_pred             CCCCCCEEECCCCCHHHHH-HHHHHHCCCCCCEECCC
Q ss_conf             1233311003787425888-99997424699702058
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTL-LARAVAGEANVPFFTIS  213 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTl-la~a~a~e~~~~f~~~~  213 (647)
                      ..|-+-.+|+|+||||||+ ||.|++--+.-.|+-+-
T Consensus       176 ~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~~wlIlh  212 (461)
T KOG3928         176 MHPVKRFVLDGEPGTGKSIALAQAVHYAADQKWLILH  212 (461)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             6763589985799876205999999987317859997


No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.24  E-value=0.036  Score=34.66  Aligned_cols=107  Identities=26%  Similarity=0.438  Sum_probs=65.3

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCC-----CC---------CCEECC----CHHHH----HHHHHHCCHHHHHHHHHHHH
Q ss_conf             3331100378742588899997424-----69---------970205----85788----64442033245999999998
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGE-----AN---------VPFFTI----SGSDF----VELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e-----~~---------~~f~~~----~~s~~----~~~~~g~g~~~vr~lf~~a~  237 (647)
                      .++.+++.||=..|||.+-|+++--     +|         .||+.+    ..+|=    .+.|. .-..+++.+++.++
T Consensus        24 ~~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~~~~~i~t~i~~~d~~~~~~S~F~-~E~~~~~~il~~~~  102 (199)
T cd03283          24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAK  102 (199)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEECCCEEEEEEECCCHHHCCCCHHH-HHHHHHHHHHHHHC
T ss_conf             98589998999986599999999999999968938624478233089999834751224535799-99999999999724


Q ss_pred             HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      ++.+|.+.+||+=     ||++    ..|.....-.+|..+.   . .+..++.||...+..+
T Consensus       103 ~~~~sLvliDEl~-----~GT~----~~eg~a~a~a~le~l~---~-~~~~~iitTH~~~l~~  152 (199)
T cd03283         103 KGEPVLFLLDEIF-----KGTN----SRERQAASAAVLKFLK---N-KNTIGIISTHDLELAD  152 (199)
T ss_pred             CCCCEEEEECCCC-----CCCC----HHHHHHHHHHHHHHHH---H-CCCEEEEECCCHHHHH
T ss_conf             8985799614324-----7998----6789999999999998---6-7987999887289886


No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.23  E-value=0.03  Score=35.24  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=21.1

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             10037874258889999742469970
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPF  209 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f  209 (647)
                      +.|+||+|+|||-|++.+..+..-.|
T Consensus         2 ivi~GPSG~GK~tl~~~L~~~~~~~~   27 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNF   27 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf             99999998899999999985198776


No 393
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.20  E-value=0.092  Score=31.73  Aligned_cols=32  Identities=34%  Similarity=0.595  Sum_probs=25.1

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .+-..+++|  +-|.||.|+|||.|.|+++|...
T Consensus        22 ~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~   55 (251)
T PRK09544         22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             3078987997999998999889999999966888


No 394
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.20  E-value=0.12  Score=30.92  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             33110037874258889999742469970
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVPF  209 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~f  209 (647)
                      +|=++|.||+|.||+-|.+.+...-.-.|
T Consensus         2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~   30 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF   30 (184)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             97799999999999999999986396450


No 395
>PTZ00035 Rad51; Provisional
Probab=95.17  E-value=0.052  Score=33.51  Aligned_cols=34  Identities=35%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             HHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             2012333110--037874258889999742469970
Q gi|254780545|r  176 LGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVPF  209 (647)
Q Consensus       176 ~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~f  209 (647)
                      ||+-++.|.+  ++|+||||||-|+.-+|-.|..|.
T Consensus       123 LGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~  158 (350)
T PTZ00035        123 LKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPI  158 (350)
T ss_pred             HCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCH
T ss_conf             278941385878972798978999999999904857


No 396
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.16  E-value=0.099  Score=31.50  Aligned_cols=117  Identities=21%  Similarity=0.323  Sum_probs=66.1

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCC--------------CCCCEE-----CCCHHHHHHHHHHCC-----HHHHHHH
Q ss_conf             0123331100378742588899997424--------------699702-----058578864442033-----2459999
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGE--------------ANVPFF-----TISGSDFVELFVGVG-----ASRVRDM  232 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e--------------~~~~f~-----~~~~s~~~~~~~g~g-----~~~vr~l  232 (647)
                      +..-++.+++.||-.-|||.+-|+++--              +.+|++     .+..+|=  ..-|.+     -.+++.+
T Consensus        25 ~~~~~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~~vpa~~~~~~~~~~i~~~i~~~d~--~~~~~StF~~E~~~~~~i  102 (213)
T cd03281          25 GGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRES--VSSGQSAFMIDLYQVSKA  102 (213)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCEEEEECCHHH--HHCCCCHHHHHHHHHHHH
T ss_conf             799825999989998765999999999999998588576740399721223767676434--441325899999999999


Q ss_pred             HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCC
Q ss_conf             999987378012063235641445578988626889889989985303235778299996298100883331656
Q gi|254780545|r  233 FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPG  307 (647)
Q Consensus       233 f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rpg  307 (647)
                      .+.|.+  .+.++|||+=     ||++.    .|.....-.+|..+-. ..+....++.||...+..+...+++.
T Consensus       103 l~~~~~--~sLvliDEl~-----~GT~~----~eg~ala~a~le~l~~-~~~~~~~~~~tTH~~~L~~~~~~~~~  165 (213)
T cd03281         103 LRLATR--RSLVLIDEFG-----KGTDT----EDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSLLPER  165 (213)
T ss_pred             HHHCCC--CCEEEEEECC-----CCCCH----HHHHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHHHHHHCCCC
T ss_conf             985888--8658773134-----78883----5679999999999996-58876649998972787654401656


No 397
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.16  E-value=0.017  Score=36.97  Aligned_cols=79  Identities=22%  Similarity=0.360  Sum_probs=50.1

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHH-----HCCHHHHHHHHHH
Q ss_conf             676642012333110037874258889999742469----------9702058578864442-----0332459999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFV-----GVGASRVRDMFEQ  235 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~-----g~g~~~vr~lf~~  235 (647)
                      ..|-+.-++--+.+|..|+.|+|||-|.+|+..+..          .+=+.+..+..+.++.     |.|+--.++|.+.
T Consensus       152 ~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~  231 (343)
T PRK13851        152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA  231 (343)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99999999769889998889861999999999628965527996115002589999689996589888583979999999


Q ss_pred             HHHHCCHHEEHHHH
Q ss_conf             98737801206323
Q gi|254780545|r  236 AKNNSPCIVFVDEI  249 (647)
Q Consensus       236 a~~~~p~iifiDei  249 (647)
                      |-...|--||+-|+
T Consensus       232 aLRmrPDRIivGEv  245 (343)
T PRK13851        232 SLRMRPDRILLGEM  245 (343)
T ss_pred             HHCCCCCEEEEEEE
T ss_conf             86079982899852


No 398
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.13  E-value=0.051  Score=33.59  Aligned_cols=32  Identities=28%  Similarity=0.564  Sum_probs=24.3

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             6420123331--1003787425888999974246
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ..+..++|||  .-..||+|||||.|-|.+.|..
T Consensus        25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll   58 (263)
T COG1127          25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL   58 (263)
T ss_pred             CCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             2731355078189998898868999999985657


No 399
>PRK06217 hypothetical protein; Validated
Probab=95.13  E-value=0.015  Score=37.49  Aligned_cols=96  Identities=25%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf             31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG  261 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~  261 (647)
                      +-|+..|.+|+|||.||+++|...++|++.+.-     .|..-|              -|.         ...+|.    
T Consensus         2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~-----~~W~p~--------------~~p---------f~~kR~----   49 (185)
T PRK06217          2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD-----FFWLPT--------------DPP---------FTTKRE----   49 (185)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-----CEECCC--------------CCC---------CCCCCC----
T ss_conf             679997899887899999999975989686455-----535689--------------997---------564379----


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf             8626889889989985303235778299996298100883331656423141000134788
Q gi|254780545|r  262 GGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVG  322 (647)
Q Consensus       262 ~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~  322 (647)
                        ..||.+.   ++..+   ...++.|+=  -|...--|+-+-   |||-.|++.+|..--
T Consensus        50 --~~eR~~l---l~~~~---~~~~~WV~s--Gs~~~wgd~l~p---~~DlvVfL~lP~~ir   97 (185)
T PRK06217         50 --PEERLRL---LLEDL---RDSEGWILS--GSLLGWGDPLEP---LFDLVVFLYIPPELR   97 (185)
T ss_pred             --HHHHHHH---HHHHH---HCCCCEEEE--CCCCCCCCCCCC---CCCEEEEEECCHHHH
T ss_conf             --9999999---99986---379998995--775232321134---356899982898999


No 400
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=95.11  E-value=0.026  Score=35.74  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHC-----CCCC---------CEE-----CCCHHHHH----HHHHHCCHHHHHHHHHH
Q ss_conf             2333110037874258889999742-----4699---------702-----05857886----44420332459999999
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAG-----EANV---------PFF-----TISGSDFV----ELFVGVGASRVRDMFEQ  235 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~-----e~~~---------~f~-----~~~~s~~~----~~~~g~g~~~vr~lf~~  235 (647)
                      .-++.+++.||-..|||.+-|+++-     .+|.         |.|     .+..+|=+    +-|.. --.+++.+++.
T Consensus        40 ~~~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G~~VPA~~a~~~~~d~I~~~i~~~dsl~~~~StF~~-e~~~~~~il~~  118 (234)
T pfam00488        40 ERSRILLITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMV-EMLETANILHN  118 (234)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCEEEEEECCCCHHHCCCCHHHH-HHHHHHHHHHH
T ss_conf             96169999788777619999999999999983687422205996365599985675334466117999-99999999973


Q ss_pred             HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf             98737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r  236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp  306 (647)
                      |.  ..+.|+|||+=     ||+.    .+|+....-.+|..+   ....+..++.||...+..+-+-..|
T Consensus       119 ~~--~~sLvliDEl~-----~GT~----~~eg~al~~aile~L---~~~~~~~~i~tTH~~~L~~l~~~~~  175 (234)
T pfam00488       119 AT--DKSLVILDELG-----RGTS----TYDGLAIAWAVAEHL---AEKIRARTLFATHYHELTKLAEKLP  175 (234)
T ss_pred             CC--CCCEECCCCCC-----CCCC----HHHHHHHHHHHHHHH---HHHCCCEEEEEECHHHHHHHHHHCC
T ss_conf             88--77322014245-----8998----346799999999999---9735977999713577999987476


No 401
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.09  E-value=0.021  Score=36.36  Aligned_cols=40  Identities=25%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             3110037874258889999742469970205857886444
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      |=|+|.|++-.|||-||+|+-....-||+.++--+|++|.
T Consensus         3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~   42 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL   42 (175)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf             4999868998988999999998476756884185898867


No 402
>KOG2228 consensus
Probab=95.08  E-value=0.01  Score=38.71  Aligned_cols=139  Identities=22%  Similarity=0.365  Sum_probs=72.9

Q ss_pred             CCCEEECCCCCHHHHHH-HHHHHC--CCCCCEECCCHHHHHH----------------H-----HHHCCHHHHHHHHHHH
Q ss_conf             33110037874258889-999742--4699702058578864----------------4-----4203324599999999
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLL-ARAVAG--EANVPFFTISGSDFVE----------------L-----FVGVGASRVRDMFEQA  236 (647)
Q Consensus       181 p~g~ll~GppGtGKTll-a~a~a~--e~~~~f~~~~~s~~~~----------------~-----~~g~g~~~vr~lf~~a  236 (647)
                      ..-+++.||-|.|||+| +-+++-  |-|-.|+.+----++.                +     -.|--+...-.|.+.-
T Consensus        49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L  128 (408)
T KOG2228          49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL  128 (408)
T ss_pred             CCCEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
T ss_conf             77269981477881674077876677517727999878500155899999999999997532124225334699999987


Q ss_pred             ---HHHCCH-HEEH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC-CCCCC
Q ss_conf             ---873780-1206-32356414455789886268898899899853032357782999962981008833316-56423
Q gi|254780545|r  237 ---KNNSPC-IVFV-DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR-PGRFD  310 (647)
Q Consensus       237 ---~~~~p~-iifi-Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R-pgRfd  310 (647)
                         .+...| |||| ||||-.+..           ..||+-.=|-.|-- +....|.+||-|-|.|.++--=.| ..||-
T Consensus       129 ~~~~~~t~~~ViFIldEfDlf~~h-----------~rQtllYnlfDisq-s~r~Piciig~Ttrld~lE~LEKRVKSRFs  196 (408)
T KOG2228         129 KKGDETTSGKVIFILDEFDLFAPH-----------SRQTLLYNLFDISQ-SARAPICIIGVTTRLDILELLEKRVKSRFS  196 (408)
T ss_pred             HCCCCCCCCEEEEEEEHHHCCCCC-----------HHHHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             337877885199983100024640-----------35678999988876-247986999850323389999999874335


Q ss_pred             CE-EEECHHH-HHHHHHHHHHHH
Q ss_conf             14-1000134-788999999985
Q gi|254780545|r  311 RQ-ITVPNPD-IVGREHILMVHS  331 (647)
Q Consensus       311 ~~-i~~~~P~-~~~r~~i~~~~~  331 (647)
                      .+ |++..|- ..+-..|++-.+
T Consensus       197 hr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228         197 HRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             CCEEECCCCCCHHHHHHHHHHHH
T ss_conf             52462269888588999999973


No 403
>KOG0057 consensus
Probab=95.07  E-value=0.13  Score=30.56  Aligned_cols=21  Identities=24%  Similarity=0.148  Sum_probs=13.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             268999999999998789888
Q gi|254780545|r  452 STTYVWMTSRLTILMGGRVAE  472 (647)
Q Consensus       452 ~~tk~~l~~~i~v~LgGRaAE  472 (647)
                      ..|..++++.|.-.++||..=
T Consensus       520 ~~TE~~i~~~i~~~~~~rTvI  540 (591)
T KOG0057         520 SETEREILDMIMDVMSGRTVI  540 (591)
T ss_pred             HHHHHHHHHHHHHHCCCCEEE
T ss_conf             566999999998751797699


No 404
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=95.07  E-value=0.009  Score=39.07  Aligned_cols=28  Identities=43%  Similarity=0.754  Sum_probs=20.7

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHC
Q ss_conf             20123331--10037874258889999742
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAG  203 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~  203 (647)
                      ....+-.|  |+|.||+|||||-|=-=|.+
T Consensus        24 i~L~i~~GEiViltGPSGSGKTTLLtLiG~   53 (220)
T TIGR02982        24 INLEINPGEIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             CCEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             631771764798437889846889998876


No 405
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.05  E-value=0.015  Score=37.50  Aligned_cols=29  Identities=28%  Similarity=0.684  Sum_probs=25.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             10037874258889999742469970205
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      |-.-||||+|||-+||.+|...|++|++.
T Consensus         2 IaIdGpagsGKsT~ak~lA~~l~~~~ldt   30 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT   30 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf             88868997898999999999909907766


No 406
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.03  E-value=0.19  Score=29.54  Aligned_cols=115  Identities=22%  Similarity=0.414  Sum_probs=66.7

Q ss_pred             HHHHHHCCCCCC--EEECCCCCHHHHH-HHHHHHCCC-CCCEECCCHHHHHHHH------HH--------CCHHHHHHHH
Q ss_conf             766420123331--1003787425888-999974246-9970205857886444------20--------3324599999
Q gi|254780545|r  172 KFKRLGGRIPHG--VLLVGPPGTGKTL-LARAVAGEA-NVPFFTISGSDFVELF------VG--------VGASRVRDMF  233 (647)
Q Consensus       172 ~~~~~g~~~p~g--~ll~GppGtGKTl-la~a~a~e~-~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf  233 (647)
                      ...-+|.-+-+|  +|+-|-||-||+. |-+..|.=+ .-+.+++||-+=...+      .|        ..+.++.++.
T Consensus        82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~  161 (456)
T COG1066          82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDII  161 (456)
T ss_pred             HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHH
T ss_conf             87653677236617997368987798999999999870595799967767899999999828996455774112899999


Q ss_pred             HHHHHHCCHHEEHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCC--EEEEE
Q ss_conf             99987378012063235641445578-988626889889989985303235778--29999
Q gi|254780545|r  234 EQAKNNSPCIVFVDEIDAVGRHRGIG-LGGGNDEREQTLNQLLVEMDGFESSEG--VILIA  291 (647)
Q Consensus       234 ~~a~~~~p~iifiDeida~~~~r~~~-~~~~~~e~~~~ln~ll~~mdg~~~~~~--v~vi~  291 (647)
                      +...+..|.++.||-|..+-...-++ .|+-..-|+-|  +-|+.+   .+..+  ++++|
T Consensus       162 ~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t--~~L~~~---AK~~~i~~fiVG  217 (456)
T COG1066         162 AELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVA--AELMRL---AKTKNIAIFIVG  217 (456)
T ss_pred             HHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHH--HHHHHH---HHHCCCEEEEEE
T ss_conf             99985499789996541230263357998589999999--999999---987597399998


No 407
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.03  E-value=0.11  Score=31.09  Aligned_cols=38  Identities=42%  Similarity=0.629  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             43356766420123331--100378742588899997424
Q gi|254780545|r  167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..|-|.=.++|+-+|-|  +|..|+-|||||.|.+-++--
T Consensus        12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG   51 (235)
T COG2874          12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG   51 (235)
T ss_pred             CCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             7847778651699746769999888985488999999998


No 408
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.00  E-value=0.014  Score=37.69  Aligned_cols=30  Identities=43%  Similarity=0.731  Sum_probs=24.9

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +...+..|  +-|.||+|||||.|-|.|||=-
T Consensus        22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             26897479799998999888899999996887


No 409
>KOG3595 consensus
Probab=94.97  E-value=0.024  Score=35.97  Aligned_cols=34  Identities=35%  Similarity=0.398  Sum_probs=22.6

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3331100378742588899997424699702058
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS  213 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~  213 (647)
                      ++.-.||.|-.|+||+-+.+=++.=++..+|.+.
T Consensus       464 ~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~  497 (1395)
T KOG3595         464 PRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIE  497 (1395)
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf             9885688740676753299998611576605742


No 410
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.93  E-value=0.11  Score=31.31  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +..+-..+++|  +-+.||.|+|||-|++.++|-..
T Consensus        20 L~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~   55 (221)
T cd03244          20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             754489986998999999999989999999967971


No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.88  E-value=0.026  Score=35.66  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=27.4

Q ss_pred             EEECCCCCHHHHHHHHHHHC----CCCCCEECCCHHHHH
Q ss_conf             10037874258889999742----469970205857886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG----EANVPFFTISGSDFV  218 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~----e~~~~f~~~~~s~~~  218 (647)
                      -+|+|.||.|||-||+++..    +.|+.+..+..-+++
T Consensus         2 CVLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlI   40 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC
T ss_conf             043269878736899999999864447605898621214


No 412
>KOG0481 consensus
Probab=94.87  E-value=0.087  Score=31.92  Aligned_cols=168  Identities=27%  Similarity=0.358  Sum_probs=84.2

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHCCHHHHHHHH-----HH--HHH-HCCHHEEHHHHHHH
Q ss_conf             1100378742588899997424699702058--57886444203324599999-----99--987-37801206323564
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS--GSDFVELFVGVGASRVRDMF-----EQ--AKN-NSPCIVFVDEIDAV  252 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~--~s~~~~~~~g~g~~~vr~lf-----~~--a~~-~~p~iifiDeida~  252 (647)
                      .|||.|-|||.|+-|-|-+-.-+-+.. ++|  ||+    -.|.+|+-+||--     -+  |-- .-.-|+-|||+|- 
T Consensus       366 NVLLLGDPgtAKSQlLKFvEkvsPIaV-YTSGKGSS----AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDK-  439 (729)
T KOG0481         366 NVLLLGDPGTAKSQLLKFVEKVSPIAV-YTSGKGSS----AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDK-  439 (729)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEE-EECCCCCC----CCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEHHHC-
T ss_conf             289836985268999999986086379-94688764----334624678668763389826659981697898300002-


Q ss_pred             HCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCC--CCCEEEEEECCCC-----------CCCC--HHHCCCCCCCCEEEEC
Q ss_conf             144557898862688-9889989985303235--7782999962981-----------0088--3331656423141000
Q gi|254780545|r  253 GRHRGIGLGGGNDER-EQTLNQLLVEMDGFES--SEGVILIAATNRP-----------DVLD--AALLRPGRFDRQITVP  316 (647)
Q Consensus       253 ~~~r~~~~~~~~~e~-~~~ln~ll~~mdg~~~--~~~v~vi~aTn~~-----------~~lD--~al~RpgRfd~~i~~~  316 (647)
                        -|......-|..- .||+.-   ---|..+  |..--|+||.|-+           |.+|  |-+|-  |||-.+-|-
T Consensus       440 --Mre~DRVAIHEAMEQQTISI---AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK  512 (729)
T KOG0481         440 --MREDDRVAIHEAMEQQTISI---AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK  512 (729)
T ss_pred             --CCCHHHHHHHHHHHHHHHHH---HHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH--HCCEEEEEE
T ss_conf             --58201568989987655777---55052256424033445337866554346785556322346764--513799983


Q ss_pred             HHHHHHH-----HHHHHHHHCC--CCCCC------CCCHHHHHHH--------HHCCCHHHHHHHHHH
Q ss_conf             1347889-----9999998548--87773------2110245441--------203798999999999
Q gi|254780545|r  317 NPDIVGR-----EHILMVHSRN--VPLAP------NVILKTIARG--------TPGFSGADLRNLVNE  363 (647)
Q Consensus       317 ~P~~~~r-----~~i~~~~~~~--~~~~~------~~d~~~la~~--------t~g~sgAdi~~~~~e  363 (647)
                      ---...|     +.++.+|..+  ...++      .+.++.+-+.        .|-+|.+--++|.+.
T Consensus       513 D~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~  580 (729)
T KOG0481         513 DEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSR  580 (729)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             36760353689877531000444455674334788223899999999998603888899999999877


No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85  E-value=0.046  Score=33.92  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCC-------CCCCEECCCH-----HHHHH---HHHHCC------HHHHHHHHHHHHHHCCH
Q ss_conf             100378742588899997424-------6997020585-----78864---442033------24599999999873780
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE-------ANVPFFTISG-----SDFVE---LFVGVG------ASRVRDMFEQAKNNSPC  242 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e-------~~~~f~~~~~-----s~~~~---~~~g~g------~~~vr~lf~~a~~~~p~  242 (647)
                      +-|+||.|.|||...--+|..       -.|.++.+..     -+=..   ...|+-      ..-++++...-+  .--
T Consensus       351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~--~~~  428 (557)
T PRK12727        351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYK  428 (557)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC--CCC
T ss_conf             787437776731179999999999739981899972664087999999999983975798289999999999836--999


Q ss_pred             HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHHH
Q ss_conf             1206323564144557898862688988998998530323577829999629810088333165642--31410001347
Q gi|254780545|r  243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPDI  320 (647)
Q Consensus       243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~~  320 (647)
                      +|+||-   .|.       +..|.   -+...|..+++...-...+|+.||...+.|+..+-+-+++  +.+|.--+=..
T Consensus       429 lvliDT---aG~-------~~rd~---~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~  495 (557)
T PRK12727        429 LVLIDT---AGM-------GQRDR---ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDET  495 (557)
T ss_pred             EEEEEC---CCC-------CCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             899949---998-------84699---99999998751477635999968899899999999853799874899614367


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             889999999854
Q gi|254780545|r  321 VGREHILMVHSR  332 (647)
Q Consensus       321 ~~r~~i~~~~~~  332 (647)
                      ..--.+|.+.++
T Consensus       496 ~~~G~~l~~~~~  507 (557)
T PRK12727        496 GRFGSALSVVVD  507 (557)
T ss_pred             CCCCHHHHHHHH
T ss_conf             870399999999


No 414
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.82  E-value=0.018  Score=36.87  Aligned_cols=31  Identities=48%  Similarity=0.697  Sum_probs=25.0

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...+++|  +-|.||+|||||.|.|++||=..
T Consensus        25 vsl~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~   57 (351)
T PRK11432         25 LDLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK   57 (351)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             574988998999999996499999999976999


No 415
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.81  E-value=0.088  Score=31.89  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             66420123331--1003787425888999974246
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +..+-..+++|  +-+.||.|+|||.|.+++.+-.
T Consensus        20 L~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~   54 (275)
T cd03289          20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             42507998799999999999997999999996035


No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.78  E-value=0.061  Score=33.04  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             31100378742588899997424
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      .=+.|.|.||+|||.+|+++...
T Consensus         8 ~viW~TGLsGSGKTTiA~~l~~~   30 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             79997899999899999999999


No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.75  E-value=0.13  Score=30.57  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHHH-----CCHHHHHHHHHHHHHH
Q ss_conf             0123331--10037874258889999742469----------97020585788644420-----3324599999999873
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFVG-----VGASRVRDMFEQAKNN  239 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a~~~  239 (647)
                      ...+++|  +-|.||.|+|||-|.|.++|-..          -+.-..+..+....-++     -|-.+=|-.+..|-..
T Consensus        20 sl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qLSgG~~Qrv~iaral~~   99 (163)
T cd03216          20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR   99 (163)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf             88987998999998899899999999957768985789999999999999999987994894699899999999999972


Q ss_pred             CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             78012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r  240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       240 ~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .|-|+++||--     .+-..    ..+ +.+-++|.++   .. +|.-|+-.|...+.
T Consensus       100 ~p~llilDEPt-----~gLD~----~~~-~~i~~~l~~l---~~-~G~til~vtH~l~~  144 (163)
T cd03216         100 NARLLILDEPT-----AALTP----AEV-ERLFKVIRRL---RA-QGVAVIFISHRLDE  144 (163)
T ss_pred             CCCEEEEECCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEEECCHHH
T ss_conf             99999990975-----57999----999-9999999999---87-89899999384999


No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.70  E-value=0.3  Score=27.99  Aligned_cols=27  Identities=41%  Similarity=0.727  Sum_probs=21.4

Q ss_pred             CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             123331--100378742588899997424
Q gi|254780545|r  178 GRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       178 ~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..+++|  +-+.||.|+|||.|.++++|-
T Consensus        21 l~v~~Gei~~iiGpnGaGKSTLl~~i~G~   49 (200)
T cd03217          21 LTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf             68879989999968999999999997077


No 419
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=94.70  E-value=0.11  Score=31.22  Aligned_cols=81  Identities=16%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
                      |+|+|.|++|||..|+.++...                            +.  +.. .++.|+| |+++..|.. ....
T Consensus         2 ivl~G~P~SGKSt~A~~L~~~l----------------------------~~--~~~-~v~vi~d-~~~~~~~~~-y~~s   48 (266)
T pfam08433         2 IILTGLPSSGKSTRAKELAKYL----------------------------EE--KGY-DVIVISD-ESLGIESDD-YKDS   48 (266)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH----------------------------HH--CCC-EEEEECC-CCCCCCCCC-CCCC
T ss_conf             7985799996889999999999----------------------------97--599-3899780-012675310-0010


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             26889889989985303235778299996298100
Q gi|254780545|r  264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      +.|. .+=..|..+.+..-+.+.+|++-.+|....
T Consensus        49 ~~Ek-~~R~~l~s~v~r~Ls~~~iVIlD~~NYiKG   82 (266)
T pfam08433        49 KKEK-FLRGSLRSAVKRDLSKNTIVIVDSLNYIKG   82 (266)
T ss_pred             HHHH-HHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf             4789-999999999987516688899548740456


No 420
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.69  E-value=0.018  Score=36.92  Aligned_cols=31  Identities=42%  Similarity=0.688  Sum_probs=24.4

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...+++|  +-|.||+|||||.|-|+|||=-.
T Consensus        23 v~l~v~~Ge~~~llGpSG~GKtTlLr~iaGl~~   55 (353)
T TIGR03265        23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER   55 (353)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             486998999999999995359999999976999


No 421
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.68  E-value=0.2  Score=29.37  Aligned_cols=63  Identities=11%  Similarity=0.154  Sum_probs=27.2

Q ss_pred             EECHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCHHHHHHH----HHCCCEEEEEECC
Q ss_conf             2158999999970991599998897999995798069998268827999999----9779828998568
Q gi|254780545|r   25 DISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGSKLLDKL----QSKDIEISSRPVN   89 (647)
Q Consensus        25 eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~~l~~~L----~e~~V~v~~~~~~   89 (647)
                      ++.|+-+++.++..+=+.|+|+=-+.  ++...+.+|....-+.-.++...+    ..+++-+-..+..
T Consensus        55 ~~~~a~l~D~l~~EreqGiTIDva~~--~F~t~~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~  121 (613)
T PRK05506         55 EIDLALLVDGLAAEREQGITIDVAYR--YFSTPKRKFIVADTPGHEQYTRNMATGASTADLAIILVDAR  121 (613)
T ss_pred             CEEEEEECCCCHHHHHCCCEEEEEEE--EEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf             60354421488889855971685677--88438705999428967989989998786538799999888


No 422
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=94.67  E-value=0.031  Score=35.15  Aligned_cols=39  Identities=31%  Similarity=0.475  Sum_probs=35.7

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf             110037874258889999742469970205857886444
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF  221 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~  221 (647)
                      =|+|.|+|-.|||-||||+-....-||+.++--.|+++.
T Consensus         3 II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~   41 (174)
T pfam07931         3 IILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAM   41 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf             999748998887999999998474746764285888767


No 423
>pfam01202 SKI Shikimate kinase.
Probab=94.66  E-value=0.04  Score=34.34  Aligned_cols=42  Identities=29%  Similarity=0.530  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             74258889999742469970205857886444203324599999999
Q gi|254780545|r  190 PGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA  236 (647)
Q Consensus       190 pGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a  236 (647)
                      +|+|||.++|.+|...++||+.+.-  +++...|.   .++++|++-
T Consensus         1 mGsGKstigk~LA~~L~~~fiD~D~--~ie~~~g~---si~eif~~~   42 (158)
T pfam01202         1 MGAGKTTIGRLLAKALGLPFIDTDQ--EIEKRTGM---SIAEIFEEE   42 (158)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEECHH--HHHHHHCC---CHHHHHHHH
T ss_conf             9897799999999996999788729--99988788---999999981


No 424
>cd04157 Arl6 Arl6 subfamily.  Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases.  Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development.  Arl6 is also believed to have a role in cilia or flagella function.  Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p.  Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation.  At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism.  Older literature suggests that A
Probab=94.66  E-value=0.039  Score=34.42  Aligned_cols=105  Identities=26%  Similarity=0.353  Sum_probs=54.0

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCC-CCEE-CCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHH
Q ss_conf             110037874258889999742469-9702-05857886---------4442033245999999998737801206-3235
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEAN-VPFF-TISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV-DEID  250 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~-~~f~-~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi-Deid  250 (647)
                      .||+.|++|+|||.|.+.+-..-. ...+ .+.|....         ..|---|..+.|.++..--..+-+|||+ |=-|
T Consensus         1 ~Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~~~~~iI~VvDssd   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCC
T ss_conf             99999999998899999997289875641685075789998399889999858874420558987056744899970763


Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCC
Q ss_conf             6414455789886268898899899853032357-7829999629810088
Q gi|254780545|r  251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPDVLD  300 (647)
Q Consensus       251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~~lD  300 (647)
                      .   .|       -.+....+..+|..-+ +... -.++++|  |..|.-|
T Consensus        81 ~---~~-------~~~~~~~l~~ll~~~~-~~~~~~PiLI~~--NK~D~~~  118 (162)
T cd04157          81 R---LR-------LVVVKDELELLLNHPD-IKHRRVPILFFA--NKMDLPD  118 (162)
T ss_pred             H---HH-------HHHHHHHHHHHHHCHH-HCCCCCEEEEEE--ECCCCCC
T ss_conf             8---88-------9999999999971765-517984599998--1477889


No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.65  E-value=0.13  Score=30.61  Aligned_cols=101  Identities=24%  Similarity=0.384  Sum_probs=55.2

Q ss_pred             EEECCCCCHHHHHHHHHHHC--------------CCCCCEEC-----CCHHHHH----HHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             10037874258889999742--------------46997020-----5857886----4442033245999999998737
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG--------------EANVPFFT-----ISGSDFV----ELFVGVGASRVRDMFEQAKNNS  240 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~--------------e~~~~f~~-----~~~s~~~----~~~~g~g~~~vr~lf~~a~~~~  240 (647)
                      +++.||-..|||.+-|+++-              ++.+|.|.     +..+|=+    +-|.. --.+++.+++.|  ..
T Consensus         2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~~d~i~~~i~~~d~~~~~~S~F~~-e~~~~~~il~~~--~~   78 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMV-EMKETANILKNA--TE   78 (185)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHC--CC
T ss_conf             899799988489999999999999997888615771995031002335641002156418999-999999999838--98


Q ss_pred             CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             80120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
                      .+.+.+||+=     ||++    ..|+....-.+|..+   ....+..++.||...+..
T Consensus        79 ~sLvliDEl~-----~GT~----~~eg~ala~aile~l---~~~~~~~~iitTH~~eL~  125 (185)
T smart00534       79 NSLVLLDELG-----RGTS----TYDGVAIAAAVLEYL---LEKIGALTLFATHYHELT  125 (185)
T ss_pred             CEEEEECCCC-----CCCC----HHHHHHHHHHHHHHH---HHCCCCEEEEEECHHHHH
T ss_conf             7376304113-----6888----147899999999999---963697599860437899


No 426
>PRK06696 uridine kinase; Validated
Probab=94.63  E-value=0.041  Score=34.30  Aligned_cols=54  Identities=30%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf             99999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r  159 DLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV  218 (647)
Q Consensus       159 ~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~  218 (647)
                      .+.++++-+      .++.-.-|-=|-.-||||+|||.||++++...   |.|++.++.-+|.
T Consensus        10 ~~~~~~~~i------~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~   66 (227)
T PRK06696         10 VVKEIANHI------LTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFH   66 (227)
T ss_pred             HHHHHHHHH------HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             999999999------835999868999778998787999999999997469948997154434


No 427
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.61  E-value=0.047  Score=33.84  Aligned_cols=114  Identities=20%  Similarity=0.312  Sum_probs=65.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCC-----CCCC---------EE-----CCCHHHHHHHHHHCC-----HHHHHHH
Q ss_conf             0123331100378742588899997424-----6997---------02-----058578864442033-----2459999
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGE-----ANVP---------FF-----TISGSDFVELFVGVG-----ASRVRDM  232 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e-----~~~~---------f~-----~~~~s~~~~~~~g~g-----~~~vr~l  232 (647)
                      +..-++.+++.||-..|||.+-|++|--     +|.+         .+     .+...|  ++.-|.+     -.+++.+
T Consensus        26 ~~~~~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~~vpA~~~~~~~~d~i~~~i~~~d--~~~~~~StF~~e~~~~~~i  103 (218)
T cd03286          26 GATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARD--DIMKGESTFMVELSETANI  103 (218)
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCEEECCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf             79974089998999887389999999999999828843014647734664899745866--1431150699999999999


Q ss_pred             HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf             99998737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r  233 FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       233 f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp  306 (647)
                      ++.+.+  .+.+++||+=     ||++    ..|+....-.+|..+   ..+.+..++.+|...+..+....+|
T Consensus       104 l~~~~~--~sLvllDE~~-----~GT~----~~eg~ala~aile~L---~~~~~~~~i~tTH~~el~~~~~~~~  163 (218)
T cd03286         104 LRHATP--DSLVILDELG-----RGTS----THDGYAIAHAVLEYL---VKKVKCLTLFSTHYHSLCDEFHEHG  163 (218)
T ss_pred             HHHCCC--CCCEECCCCC-----CCCC----CHHHHHHHHHHHHHH---HHCCCCEEEEECCCHHHHHHHHHCC
T ss_conf             986799--8501025546-----8998----116799999999999---8637976999767289999886488


No 428
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily.  Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases.  Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS).  Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions.  Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.58  E-value=0.047  Score=33.89  Aligned_cols=101  Identities=28%  Similarity=0.369  Sum_probs=62.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHHHHH
Q ss_conf             100378742588899997424699702058578864---------442033245999999998737801206-3235641
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV-DEIDAVG  253 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi-Deida~~  253 (647)
                      ||+.|-+|.|||.+-..+.++--.....+.|.....         .|---|..+.|.++..--+.+-+|||+ |=-|   
T Consensus         2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDssD---   78 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD---   78 (167)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCC---
T ss_conf             89990089988999999828998765087773179999899999999899877888999987347765799985575---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             445578988626889889989985303235778299996298100
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      +.|       =.|....|..+|.+=+  -.+..|+|+|  |.-|.
T Consensus        79 ~~r-------l~eak~~L~~lL~~~~--l~~~PiLIla--NKqDl  112 (167)
T cd04161          79 DDR-------VQEVKEILRELLQHPR--VSGKPILVLA--NKQDK  112 (167)
T ss_pred             HHH-------HHHHHHHHHHHHCCHH--HCCCEEEEEE--ECCCC
T ss_conf             889-------9999999999965887--7899599998--86576


No 429
>cd04158 ARD1 ARD1 subfamily.  ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family.  In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif.  This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family.  Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity.  However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain.  The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs.  The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain.  ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.57  E-value=0.043  Score=34.15  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=59.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf             10037874258889999742469970205857886---------444203324599999999873780120632356414
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR  254 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~  254 (647)
                      ||+.|.+|+|||.+.+.+.+..-.+-..+-|-...         ..|---|..+.|.+...--+++-+|||.  +|+--+
T Consensus         2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfV--vDssd~   79 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV--VDSSHR   79 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEE--EECCHH
T ss_conf             999998999889999999579968977868816699998988999998999724463678755576279999--986306


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             45578988626889889989985303235778299996298100
Q gi|254780545|r  255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      .|       =+|-...|+.+|.+-+-  .+..++++|  |..|.
T Consensus        80 ~~-------~~ea~~~l~~ll~~~~~--~~~piLIla--NK~Dl  112 (169)
T cd04158          80 DR-------VSEAHSELAKLLTEKEL--RDALLLIFA--NKQDV  112 (169)
T ss_pred             HH-------HHHHHHHHHHHHHHHHH--CCCEEEEEE--ECCCC
T ss_conf             77-------99999999999712753--798499997--35567


No 430
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54  E-value=0.029  Score=35.34  Aligned_cols=199  Identities=18%  Similarity=0.276  Sum_probs=98.1

Q ss_pred             ECHHHHHHHHHHCCEEEEEEECCE-EEEEEECCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             158999999970991599998897-9999957980699982688279999999779828998568652189999999999
Q gi|254780545|r   26 ISYSQFIKDVDAGRVRKISVIGTH-ITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFP  104 (647)
Q Consensus        26 IsYSeFlk~Le~g~V~sV~I~~~~-i~~~~~~g~~~~~t~~p~~~~~l~~~L~e~~V~v~~~~~~~~s~~~~~iL~~~LP  104 (647)
                      +.|..+.-.+.+.+|+.|.+++.. +..+.+... .+.+..+..+......+...-.....++.....+    ++..-+|
T Consensus        13 ~g~g~l~p~l~D~~iedI~~n~~~~v~v~~~~~~-~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~P----i~~~~lp   87 (312)
T COG0630          13 IGLGKLEPLLRDPRIEDIVVNGPGPVYVEHKGGG-SYVTNIPFLTEEELDSLAIRLAQRSGKPISEANP----ILDATLP   87 (312)
T ss_pred             CCCCCCCHHHCCCCCEEEEECCCCCEEEEEECCC-EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC----CEEEECC
T ss_conf             2652353001389840699728962899970675-0342554567889999999999862996678887----1687748


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             99999999999985167788777676632100001124225698898528899999999987433567664201233311
Q gi|254780545|r  105 LVLVVLVWMFLMRQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGV  184 (647)
Q Consensus       105 liLli~i~~fl~rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~  184 (647)
                      -..-+.+  -+-.....+  +..+.+-|.+.+       -.+-.|+........+..          .|..+-..-.+-+
T Consensus        88 ~g~Ri~i--~~~~~v~~~--~~s~~IRk~~~~-------~~t~~~l~~~gt~~~~~~----------ayL~~~ie~~~si  146 (312)
T COG0630          88 DGSRIQI--VLGPEVSPN--GSSFTIRKFSDE-------PITPEDLIEYGTISPEQA----------AYLWLAIEARKSI  146 (312)
T ss_pred             CCEEEEE--ECCCCCCCC--CCCEEEECCCCC-------CCCHHHHHHCCCCCHHHH----------HHHHHHHHCCCCE
T ss_conf             8648988--407865689--886688626688-------899899854378888899----------9999999769949


Q ss_pred             EECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHHHC-----CHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf             0037874258889999742469----------970205857886444203-----3245999999998737801206323
Q gi|254780545|r  185 LLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFVGV-----GASRVRDMFEQAKNNSPCIVFVDEI  249 (647)
Q Consensus       185 ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~g~-----g~~~vr~lf~~a~~~~p~iifiDei  249 (647)
                      +.+||+|+|||-+-.|+...-.          .|=+.+.+...+.++...     +.-...++++.|-...|-.|.++|+
T Consensus       147 ii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~~~~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEv  226 (312)
T COG0630         147 IICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGEL  226 (312)
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             99888888649599999863785221899525554147887658998325777656666999999986239986999633


Q ss_pred             H
Q ss_conf             5
Q gi|254780545|r  250 D  250 (647)
Q Consensus       250 d  250 (647)
                      .
T Consensus       227 r  227 (312)
T COG0630         227 R  227 (312)
T ss_pred             E
T ss_conf             3


No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53  E-value=0.056  Score=33.29  Aligned_cols=100  Identities=23%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC
Q ss_conf             00112422569889852889999999998743356766420123331-10037874258889999742469---970205
Q gi|254780545|r  137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI  212 (647)
Q Consensus       137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~  212 (647)
                      +..+.....+++|.+=.++..+.++++.              .-|.| +|+.||+|.|||-+..|+-.+..   ..++.+
T Consensus        49 ll~~~~~~~~L~~LG~~~~~~~~l~~~~--------------~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~ti  114 (264)
T cd01129          49 ILDKKNQILDLEKLGLKPENLEIFRKLL--------------EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV  114 (264)
T ss_pred             EECCCCCCCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             7577666579879579999999999997--------------08998899978999977999999998643688508998


Q ss_pred             CHH-HHH-----HHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             857-886-----44420332-459999999987378012063235
Q gi|254780545|r  213 SGS-DFV-----ELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       213 ~~s-~~~-----~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeid  250 (647)
                      --+ ++.     ..-+.... ..-.+.-..+-...|-||+|+||.
T Consensus       115 EdPvE~~~~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~igEiR  159 (264)
T cd01129         115 EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             ECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf             676314568873576166668789999999855699988746889


No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.49  E-value=0.056  Score=33.28  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=64.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCC-----CCC---------CEE-----CCCHHHHH----HHHHHCCHHHHHHHHHHHH
Q ss_conf             331100378742588899997424-----699---------702-----05857886----4442033245999999998
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGE-----ANV---------PFF-----TISGSDFV----ELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e-----~~~---------~f~-----~~~~s~~~----~~~~g~g~~~vr~lf~~a~  237 (647)
                      .+..++.||-..|||.+-|+++--     +|.         |.+     .+...|=+    +-|.. --.+++.+++.+.
T Consensus        31 ~~~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~~vpa~~~~~~~~d~i~~~i~~~d~~~~~~StF~~-e~~~~~~il~~~~  109 (222)
T cd03287          31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV-ELSETSHILSNCT  109 (222)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEECCCEEEEECCCCCHHHCCCCHHHH-HHHHHHHHHHHCC
T ss_conf             448999789988728999999999999972677214563996357599950678623445227999-9999999998678


Q ss_pred             HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
Q ss_conf             7378012063235641445578988626889889989985303235778299996298100883331656423
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD  310 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd  310 (647)
                      .  .+.++|||+=     ||+.    ..|+....-.+|..+   ....+..++.||...+..+-.-..|+++.
T Consensus       110 ~--~sLvliDEl~-----~GT~----~~eg~ala~aile~l---~~~~~~~~i~tTH~~~L~~l~~~~~~~v~  168 (222)
T cd03287         110 S--RSLVILDELG-----RGTS----THDGIAIAYATLHYL---LEEKKCLVLFVTHYPSLGEILRRFEGSIR  168 (222)
T ss_pred             C--CCEEEECCCC-----CCCC----HHHHHHHHHHHHHHH---HHCCCCEEEEECCCHHHHHHHHHCCCCEE
T ss_conf             8--7544232246-----8998----357799999999999---86058899994762789999875878457


No 433
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.49  E-value=0.1  Score=31.46  Aligned_cols=110  Identities=22%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             CCEEECCCCCHHHHHHHHHHHC-----CCC---------CCEE-----CCCHHHHHHHHHHCC-----HHHHHHHHHHHH
Q ss_conf             3110037874258889999742-----469---------9702-----058578864442033-----245999999998
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAG-----EAN---------VPFF-----TISGSDFVELFVGVG-----ASRVRDMFEQAK  237 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~-----e~~---------~~f~-----~~~~s~~~~~~~g~g-----~~~vr~lf~~a~  237 (647)
                      +.+++.||-..|||.+-|+++-     .+|         +|.|     .+..+|=  ..-|.+     -.+++.+++.| 
T Consensus        31 ~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~~vpA~~a~i~~~d~I~t~i~~~d~--i~~~~StF~~e~~~~~~il~~a-  107 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDD--LAGGRSTFMVEMVETANILNNA-  107 (216)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCEEEEEECCCCH--HHCCCCHHHHHHHHHHHHHHHC-
T ss_conf             5999989987745999999999999998687587661599704469995068621--3337265899999999999848-


Q ss_pred             HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCC
Q ss_conf             7378012063235641445578988626889889989985303235778299996298100883331656
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPG  307 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rpg  307 (647)
                       ...+.|.|||+=     ||++.    .|.......+|..+   ..+.+..++.||...+.-+-+...|+
T Consensus       108 -~~~sLvliDEl~-----~gT~~----~eg~ala~aile~L---~~~~~~~~i~tTH~~~L~~l~~~~~~  164 (216)
T cd03284         108 -TERSLVLLDEIG-----RGTST----YDGLSIAWAIVEYL---HEKIGAKTLFATHYHELTELEGKLPR  164 (216)
T ss_pred             -CCCCEEEECCCC-----CCCCH----HHHHHHHHHHHHHH---HHCCCCEEEEEECHHHHHHHHHHCCC
T ss_conf             -776156334456-----89985----78899999999999---97079728975050889998762866


No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.48  E-value=0.11  Score=31.29  Aligned_cols=32  Identities=31%  Similarity=0.596  Sum_probs=23.6

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf             110037874258889999742469970205857
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGS  215 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s  215 (647)
                      =+.|+||+|+||+-+.|++-..-+ -.+|+|.+
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~T   37 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDDK-LRFSVSAT   37 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC-EEEEEEEC
T ss_conf             999989988888999999986349-37999852


No 435
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=94.46  E-value=0.029  Score=35.43  Aligned_cols=34  Identities=38%  Similarity=0.571  Sum_probs=27.6

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             420123331--1003787425888999974246997
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP  208 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~  208 (647)
                      +++...+.|  ++|.|+=|.|||.|+|+++...|+.
T Consensus         7 ~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~   42 (123)
T pfam02367         7 RLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGIT   42 (123)
T ss_pred             HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             999768999799998887788999999999985998


No 436
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea.  This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily.  The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46  E-value=0.025  Score=35.86  Aligned_cols=30  Identities=23%  Similarity=0.468  Sum_probs=23.9

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ....+++|  +-+.||+|||||.|.|++||=.
T Consensus        43 vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~   74 (269)
T cd03294          43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             47588899999999899848999999997599


No 437
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.42  E-value=0.058  Score=33.22  Aligned_cols=82  Identities=29%  Similarity=0.470  Sum_probs=49.0

Q ss_pred             HHCCCCCCEEECCCCCHHHHHHHHHHHCCCC------CC----------------------------------EECCCH-
Q ss_conf             2012333110037874258889999742469------97----------------------------------020585-
Q gi|254780545|r  176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEAN------VP----------------------------------FFTISG-  214 (647)
Q Consensus       176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~~------~~----------------------------------f~~~~~-  214 (647)
                      +|..|-=|+ .|||-||||+-|-|.+-+---      .-                                  ++..+| 
T Consensus        83 y~~qP~I~v-VYGPTG~GKSQLlRNlis~~lI~P~PETVfFItPq~~mIpp~E~~aWe~Ql~EGNY~~~~dgti~P~t~t  161 (370)
T pfam02456        83 YGLQPVIGV-VYGPTGCGKSQLLRNLLSCQLIQPIPETVFFITPQKDMIPPQEQTAWELQLCEGNYSCGPDGTIAPQTGT  161 (370)
T ss_pred             CCCCCEEEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf             678744999-9889987789999998734667799972899767778679899999999987357767999746356575


Q ss_pred             --HHHHHHHHHCC-------HHHHHHHHHHHHHHCCHHEEHHHH-HHHHCCCCC
Q ss_conf             --78864442033-------245999999998737801206323-564144557
Q gi|254780545|r  215 --SDFVELFVGVG-------ASRVRDMFEQAKNNSPCIVFVDEI-DAVGRHRGI  258 (647)
Q Consensus       215 --s~~~~~~~g~g-------~~~vr~lf~~a~~~~p~iifiDei-da~~~~r~~  258 (647)
                        ++|++|-.-+-       -..=+.+|.+|-++.|--|.+||- +-+|..++-
T Consensus       162 ~~P~Fv~msy~d~t~~~Nldv~~p~NiF~~Aa~~GPIaIImDECMe~Lg~~~~I  215 (370)
T pfam02456       162 FRPRFVEMTYEDATSPENLDVNHPNNIFVQAAKNGPIAIIMDECMEKLGSHKSI  215 (370)
T ss_pred             CCHHHEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHCCCCCH
T ss_conf             350030301777268335688980679999870598799879999986279865


No 438
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.36  E-value=0.018  Score=36.84  Aligned_cols=23  Identities=43%  Similarity=0.768  Sum_probs=20.8

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             10037874258889999742469
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ++|.|+||.|||-+||-+|.+..
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             99826999880178999999999


No 439
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.34  E-value=0.19  Score=29.49  Aligned_cols=41  Identities=41%  Similarity=0.806  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHH
Q ss_conf             288999999999874335676642012-----3331100378742588899
Q gi|254780545|r  153 VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLA  198 (647)
Q Consensus       153 ~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla  198 (647)
                      ++...+.+++.+..||...    +|.+     .| =.|+.||||+|||-+-
T Consensus        83 ~~~l~~r~~~al~~Lk~~~----~~g~~~ly~LP-WYlviG~~gsGKTt~l  128 (1169)
T TIGR03348        83 IRELRARFNEALALLKRSR----LGGRRYLYDLP-WYLVIGPPGSGKTTLL  128 (1169)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CCCCCHHHHCC-EEEEECCCCCCHHHHH
T ss_conf             9999999999999997552----68732264389-5899789998668999


No 440
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.33  E-value=0.023  Score=36.07  Aligned_cols=29  Identities=24%  Similarity=0.540  Sum_probs=25.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf             10037874258889999742469970205
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTI  212 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~  212 (647)
                      |-.-||.|+||+-+||.+|.+.|.+|+..
T Consensus         7 IaIDGpagSGKST~ak~lA~~L~~~yldT   35 (225)
T PRK00023          7 IAIDGPAGSGKGTVAKILAKKLGFHYLDT   35 (225)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf             99658986787899999999939887641


No 441
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.30  E-value=0.028  Score=35.50  Aligned_cols=30  Identities=47%  Similarity=0.657  Sum_probs=24.0

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +...+++|  +-|.||+|||||.|-|++||=.
T Consensus        24 vsl~i~~GE~~~llGpSG~GKTTlLr~iaGL~   55 (362)
T TIGR03258        24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             67199999899999999745999999997776


No 442
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.23  E-value=0.23  Score=28.85  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=20.4

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             0123331100378742588899997424
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      |.++-.=+++.|.||.|||.||--+|..
T Consensus       190 Gl~~g~LiIiaARPsmGKTafalnia~n  217 (421)
T TIGR03600       190 GLVKGDLIVIGARPSMGKTTLALNIAEN  217 (421)
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             9998868999854678745999999999


No 443
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.18  E-value=0.027  Score=35.62  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=23.4

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             0123331--1003787425888999974246
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ...+|+|  +-|.||+|||||.|.+++||-.
T Consensus        18 ~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl~   48 (352)
T PRK11144         18 NLTLPAQGITAIFGRSGAGKTSLINLISGLT   48 (352)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9998899899999999962999999997689


No 444
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=94.14  E-value=0.22  Score=28.99  Aligned_cols=87  Identities=31%  Similarity=0.381  Sum_probs=46.1

Q ss_pred             HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC------------CCCCCHHHCCC
Q ss_conf             378012063235641445578988626889889989985303235778299996298------------10088333165
Q gi|254780545|r  239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR------------PDVLDAALLRP  306 (647)
Q Consensus       239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~------------~~~lD~al~Rp  306 (647)
                      .-|-|+||||..-+-           -|--.-||--|      ++.-.-+||-||||            |.-+..-|   
T Consensus       274 lvpGVLFIDEvHMLD-----------iEcFsfLnral------Es~laPivI~ATNRG~~~IRGTd~~sPHGiP~Dl---  333 (395)
T pfam06068       274 IVPGVLFIDEVHMLD-----------IECFSFLNRAL------ESELAPIVILATNRGICTIRGTDIISPHGIPLDL---  333 (395)
T ss_pred             EECCCEEEECCHHCC-----------HHHHHHHHHHH------CCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHH---
T ss_conf             842746885000000-----------58998887765------0567876999844652035256775888998777---


Q ss_pred             CCCCCE--EEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH
Q ss_conf             642314--10001347889999999854--8877732110245441
Q gi|254780545|r  307 GRFDRQ--ITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARG  348 (647)
Q Consensus       307 gRfd~~--i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~  348 (647)
                        +||.  |...+=+.++-++|+++.++  +..++++ -++.|++.
T Consensus       334 --LDRllII~T~py~~~ei~~Ii~iRa~~E~v~l~~~-al~~L~~i  376 (395)
T pfam06068       334 --LDRLLIITTEPYTREEIKQILEIRAQEEGVEISEE-ALDLLAKI  376 (395)
T ss_pred             --HHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHH
T ss_conf             --73025885688998999999998777607877989-99999986


No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.12  E-value=0.028  Score=35.50  Aligned_cols=33  Identities=33%  Similarity=0.639  Sum_probs=26.2

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6420123331--10037874258889999742469
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+...+++|  +-+.||+|||||.|-+.+||=..
T Consensus        20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             05035877997999989997889999999968787


No 446
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily.  Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project.  It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2).  This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.10  E-value=0.087  Score=31.91  Aligned_cols=102  Identities=26%  Similarity=0.419  Sum_probs=60.7

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf             1003787425888999974246997-0205857886---------44420332459999999987378012063235641
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG  253 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~  253 (647)
                      +|+.|..|.|||.+...+.++.... ...+-|..+.         .+|---|..+.|.+...--..+-+|||+  +|+--
T Consensus         2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~~~gIIfV--VDssD   79 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV--VDSAD   79 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE--EECCC
T ss_conf             9999679998999999981699876535632774699998999999985375288865699871177589999--95688


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             44557898862688988998998530323577829999629810088
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      +.|       =+|....|..+|.+-    .+-.++|+|  |.-|.-+
T Consensus        80 ~~r-------l~eak~~L~~ll~~~----~~~PlLIla--NKqDl~~  113 (164)
T cd04162          80 SER-------LPLARQELHQLLQHP----PDLPLVVLA--NKQDLPA  113 (164)
T ss_pred             HHH-------HHHHHHHHHHHHHCC----CCCEEEEEE--ECCCCCC
T ss_conf             889-------999999999997087----998699998--6324336


No 447
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.09  E-value=0.49  Score=26.47  Aligned_cols=187  Identities=18%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH--HHHCCHHEEHHHHHHHHCC
Q ss_conf             12333110037874258889999742469970205857886444203324599999999--8737801206323564144
Q gi|254780545|r  178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA--KNNSPCIVFVDEIDAVGRH  255 (647)
Q Consensus       178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a--~~~~p~iifiDeida~~~~  255 (647)
                      -+-|-=||+.|.+||||+.||--+|...|.+-+-  ++|           -||++....  ++..|++ +---.+|.-.-
T Consensus        89 ~~~pliILigGtsGvGKSTlA~~LA~rLgI~~vi--sTD-----------~IREVmR~~~~~el~P~L-h~SSy~Awk~l  154 (306)
T PRK04220         89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVI--GTD-----------SIREVMRKIISKELLPTL-HESSYTAWKSL  154 (306)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCH-----------HHHHHHHHCCCCCCCCHH-HCCCHHHHHCC
T ss_conf             6998799985899887899999999970988342--221-----------699999852483017513-22751310023


Q ss_pred             CCCCCCCCCHH---HHHHHHHHHHHHCCC-----CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf             55789886268---898899899853032-----3577829999629810088333165642314100013478899999
Q gi|254780545|r  256 RGIGLGGGNDE---REQTLNQLLVEMDGF-----ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHIL  327 (647)
Q Consensus       256 r~~~~~~~~~e---~~~~ln~ll~~mdg~-----~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~  327 (647)
                      +... .+..+-   -+...+++..-+|+.     .....+|+=|.-=.|..+++...- +--=.-+.+-++|.+.-++-|
T Consensus       155 ~~~~-~~~~~~I~Gf~~Q~~~V~~gI~aiI~Ra~~eg~slIIEGVHlvP~~i~~~~~~-~~~vi~fll~i~dEe~H~~RF  232 (306)
T PRK04220        155 RRPP-WEEPDHILGFERHVEPVLVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLN-MPNVFMFVLTLSDEETHKARF  232 (306)
T ss_pred             CCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC-CCCEEEEEEEECCHHHHHHHH
T ss_conf             6787-78657999999999999999999999999729968998430377887777643-883899999978889999999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf             99854887773211024544120379899999999987645532024210456899975013
Q gi|254780545|r  328 MVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKIL  389 (647)
Q Consensus       328 ~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~  389 (647)
                      ..-.+....    ..+   ++...|..  |..+-+.-.-.|-+.+-+.|...|+++++++++
T Consensus       233 ~~Ra~~~~R----~~~---rYl~~f~~--IR~IQ~yLv~~A~~~~vPiI~N~~id~tv~~i~  285 (306)
T PRK04220        233 YARARVSKR----PAE---RYLKHFDE--IREIQDYIVEKAKEHGVPVIENVSIEETVDKIL  285 (306)
T ss_pred             HHHCCCCCC----CHH---HHHHHHHH--HHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHH
T ss_conf             985044789----878---99997999--999999999998880998106866899999999


No 448
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=94.08  E-value=0.044  Score=34.03  Aligned_cols=79  Identities=23%  Similarity=0.473  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC--CEEECCCCCHHHHHHHHHHHCCCCCCEEC--CCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             999874335676642012333--11003787425888999974246997020--58578864442033245999999998
Q gi|254780545|r  162 EIVDFLCDPQKFKRLGGRIPH--GVLLVGPPGTGKTLLARAVAGEANVPFFT--ISGSDFVELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       162 ~~v~~l~~~~~~~~~g~~~p~--g~ll~GppGtGKTlla~a~a~e~~~~f~~--~~~s~~~~~~~g~g~~~vr~lf~~a~  237 (647)
                      |++.||..-+.|-+   .+||  -+++||||-|||+|++-.+-.=.+-..+|  -|.|.|==.=  ...++| .|-+.| 
T Consensus       244 efi~Fl~alk~fLk---g~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ViSfvNskShFWLqP--L~daKi-allDDA-  316 (432)
T pfam00519       244 EFISFLSALKDFLK---GIPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFVNSKSHFWLQP--LADAKI-ALLDDA-  316 (432)
T ss_pred             CHHHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCC--HHHCCE-EEEECC-
T ss_conf             39999999999964---89852469998999966768999999984986999614877302273--532746-422066-


Q ss_pred             HHCCHHEEHHH
Q ss_conf             73780120632
Q gi|254780545|r  238 NNSPCIVFVDE  248 (647)
Q Consensus       238 ~~~p~iifiDe  248 (647)
                       ..||=-+||-
T Consensus       317 -T~~CW~Y~D~  326 (432)
T pfam00519       317 -THACWDYIDT  326 (432)
T ss_pred             -CHHHHHHHHH
T ss_conf             -0888999999


No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.08  E-value=0.17  Score=29.85  Aligned_cols=104  Identities=20%  Similarity=0.386  Sum_probs=56.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHC-----CCC----------CCEE-----CCCHHH-H---HHHHHHCCHHHHHHHHHHH
Q ss_conf             33110037874258889999742-----469----------9702-----058578-8---6444203324599999999
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAG-----EAN----------VPFF-----TISGSD-F---VELFVGVGASRVRDMFEQA  236 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~-----e~~----------~~f~-----~~~~s~-~---~~~~~g~g~~~vr~lf~~a  236 (647)
                      .+.+++.||=..|||.+-|+++-     .+|          +|+|     .+..++ +   .+.|. .--.+++.+++.+
T Consensus        28 ~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~vpa~~~~~~~~~d~i~~~i~~~d~~~~~~S~F~-~E~~~~~~il~~~  106 (200)
T cd03280          28 KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS-SHMKNIARILQHA  106 (200)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHH-HHHHHHHHHHHHC
T ss_conf             339999889877509999999999999997778001100472665678888467336667787999-9999999999858


Q ss_pred             HHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             8737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r  237 KNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       237 ~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                      .  ..+.++|||+=     ||++    ..|+......+|..+-   . .+..+|.+|...+.-+
T Consensus       107 ~--~~sLvliDE~~-----~gTn----~~eg~~~a~a~l~~l~---~-~~~~~i~tTH~~eL~~  155 (200)
T cd03280         107 D--PDSLVLLDELG-----SGTD----PVEGAALAIAILEELL---E-RGALVIATTHYGELKA  155 (200)
T ss_pred             C--CCCEEEECCCC-----CCCC----HHHHHHHHHHHHHHHH---H-CCCEEEEECCCHHHHH
T ss_conf             8--88879755666-----8988----7899999999999998---5-7997999897178998


No 450
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.07  E-value=0.028  Score=35.44  Aligned_cols=34  Identities=38%  Similarity=0.617  Sum_probs=27.1

Q ss_pred             HHHHHCCCCC-C--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             6642012333-1--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPH-G--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~-g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      |.-.|..+|| |  +-|.||.|+|||-|.|.++|...
T Consensus        15 ~~l~~L~ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~   51 (255)
T cd03236          15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             EEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             3651789898980999989999709999999967986


No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.07  E-value=0.094  Score=31.69  Aligned_cols=67  Identities=28%  Similarity=0.455  Sum_probs=39.5

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCC----CEECCC-HHHHHHH---------HHHCCHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf             100378742588899997424699----702058-5788644---------42033245999999998737801206323
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANV----PFFTIS-GSDFVEL---------FVGVGASRVRDMFEQAKNNSPCIVFVDEI  249 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~----~f~~~~-~s~~~~~---------~~g~g~~~vr~lf~~a~~~~p~iifiDei  249 (647)
                      +|+.||.|.|||-+..|+..+..-    ..+.+- ..+|+-.         -+|....-..+..+.|-...|-+|+|.|+
T Consensus         4 iLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~~~sf~~~lr~aLR~~PDvI~vGEi   83 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM   83 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECCCC
T ss_conf             99989999979999999998536378836999647377523676448873330788637999999998548885752777


Q ss_pred             H
Q ss_conf             5
Q gi|254780545|r  250 D  250 (647)
Q Consensus       250 d  250 (647)
                      -
T Consensus        84 R   84 (198)
T cd01131          84 R   84 (198)
T ss_pred             C
T ss_conf             8


No 452
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.07  E-value=0.033  Score=35.01  Aligned_cols=32  Identities=44%  Similarity=0.678  Sum_probs=24.8

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .+...+++|  +-+.||+|||||.|.|++||--.
T Consensus        18 ~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~   51 (213)
T cd03301          18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             6177986998999999998809999999976999


No 453
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.06  E-value=0.25  Score=28.57  Aligned_cols=37  Identities=30%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--HHHHHHC
Q ss_conf             998789888886136875652335589999999--9998624
Q gi|254780545|r  464 ILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLA--RVMVTQF  503 (647)
Q Consensus       464 v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA--~~mV~~~  503 (647)
                      .++.|-+.|-+.||..+.|   ...+.+|-+.|  ...+.+.
T Consensus       413 ~LF~~TI~~NI~~g~~~at---~eei~~a~k~a~~~d~I~~l  451 (567)
T COG1132         413 LLFSGTIRENIALGRPDAT---DEEIEEALKLANAHEFIANL  451 (567)
T ss_pred             HHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHC
T ss_conf             7777669999745788999---99999999994863789847


No 454
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.06  E-value=0.41  Score=27.03  Aligned_cols=31  Identities=35%  Similarity=0.624  Sum_probs=22.5

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...+++|  +=|.||-|.|||-+.|.++|-..
T Consensus        26 vs~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~   58 (306)
T PRK13536         26 LSFTVASGECFGLLGPNGAGKSTIARMILGMTS   58 (306)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             177885996999999989809999999967957


No 455
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.98  E-value=0.028  Score=35.47  Aligned_cols=29  Identities=41%  Similarity=0.617  Sum_probs=22.9

Q ss_pred             CCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             123331--10037874258889999742469
Q gi|254780545|r  178 GRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       178 ~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ..+.+|  +=+.||+|||||.|++++||=..
T Consensus        28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          28 LEIERGETLGIVGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             9964897899984898988899999956567


No 456
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.98  E-value=0.028  Score=35.49  Aligned_cols=21  Identities=52%  Similarity=0.816  Sum_probs=18.4

Q ss_pred             ECCCCCHHHHHHHHHHHCCCC
Q ss_conf             037874258889999742469
Q gi|254780545|r  186 LVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       186 l~GppGtGKTlla~a~a~e~~  206 (647)
                      |-||+|||||.|=+-+||=-.
T Consensus         1 LLGpSGcGKTTlLrlLAGf~~   21 (331)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ   21 (331)
T ss_pred             CCCCCCCCHHHHHHHHHCCCC
T ss_conf             978888747999999834587


No 457
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.96  E-value=0.067  Score=32.75  Aligned_cols=21  Identities=29%  Similarity=0.749  Sum_probs=18.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCC
Q ss_conf             100378742588899997424
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e  204 (647)
                      |+|.|-||.|||.+|+.++..
T Consensus         2 ivl~GlP~SGKSt~a~~L~~~   22 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELSKK   22 (249)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             789678999899999999999


No 458
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta).  SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane.  Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP.  SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane.  The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane.  SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon.  High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=93.94  E-value=0.063  Score=32.94  Aligned_cols=65  Identities=34%  Similarity=0.461  Sum_probs=35.7

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHH--H----------HHHHHHCCHHHHHH-HHHHHHHHCCHHEEHH
Q ss_conf             11003787425888999974246997-02058578--8----------64442033245999-9999987378012063
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSD--F----------VELFVGVGASRVRD-MFEQAKNNSPCIVFVD  247 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~--~----------~~~~~g~g~~~vr~-lf~~a~~~~p~iifiD  247 (647)
                      -+||.||+|.|||.|---+......+ +-++....  +          +..+-=-|-.|+|. +++.-+..+.||||.=
T Consensus         2 tvLl~Gl~~aGKT~Lf~~L~~~~~~~T~tS~~~n~~~~~~~~~~~~~~~~lvD~PGH~klR~~~~~~~~~~~~gIVfvV   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             5999907999899999999749988877888786206640246687279999879968899999999875498999999


No 459
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.93  E-value=0.032  Score=35.02  Aligned_cols=31  Identities=42%  Similarity=0.734  Sum_probs=24.4

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +...+++|  +-|.||+|||||.|.|++||=..
T Consensus        23 vsl~i~~Ge~~~llGpsG~GKTTllr~iaGl~~   55 (358)
T PRK11650         23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER   55 (358)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             277988998999999986369999999976999


No 460
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.93  E-value=0.036  Score=34.65  Aligned_cols=28  Identities=43%  Similarity=0.616  Sum_probs=23.2

Q ss_pred             CCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             123331--1003787425888999974246
Q gi|254780545|r  178 GRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       178 ~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ..+++|  +-|.||+|||||.|.|+++|=.
T Consensus        45 l~I~~GEi~~lvGpSGsGKSTLLr~i~GL~   74 (382)
T TIGR03415        45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLN   74 (382)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             488799899999999734999999997599


No 461
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=93.92  E-value=0.033  Score=34.99  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=21.8

Q ss_pred             CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             123331--100378742588899997424
Q gi|254780545|r  178 GRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       178 ~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..+.+|  +-+.||+|||||.|+|+++|-
T Consensus        33 ~~i~~GE~l~ivGeSGsGKSTL~r~i~gl   61 (266)
T PRK10419         33 LTLKSGETVALLGRSGCGKSTLARLLVGL   61 (266)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             58889989999999997799999999669


No 462
>KOG3354 consensus
Probab=93.90  E-value=0.029  Score=35.33  Aligned_cols=36  Identities=25%  Similarity=0.560  Sum_probs=29.6

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             31100378742588899997424699702058578864
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
                      --+++.|+.||||+..++|++.+.+++|+  .|-+|..
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~Hp   48 (191)
T KOG3354          13 YVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLHP   48 (191)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCC--CCCCCCC
T ss_conf             05999835887744599999998588624--5555798


No 463
>cd04159 Arl10_like Arl10-like subfamily.  Arl9/Arl10 was identified from a human cancer-derived EST dataset.  No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.89  E-value=0.2  Score=29.32  Aligned_cols=63  Identities=29%  Similarity=0.419  Sum_probs=40.5

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf             1003787425888999974246-99702058578864---------442033245999999998737801206
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV  246 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi  246 (647)
                      |++.|++|+|||-|.+.+.+.- ......+-|.++..         .|-=.|..+.|.+...--+.+-+|||+
T Consensus         2 I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~~~~i~~~~~~l~iwDt~G~e~~~~l~~~y~~~~~~ii~V   74 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV   74 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             8999999986999999997599988616732505899998999999997983587799999874686368751


No 464
>KOG1803 consensus
Probab=93.88  E-value=0.016  Score=37.21  Aligned_cols=17  Identities=47%  Similarity=0.782  Sum_probs=13.4

Q ss_pred             CCEEECCCCCHHHHHHH
Q ss_conf             31100378742588899
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLA  198 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla  198 (647)
                      .=.+.+||||||||..-
T Consensus       202 ~l~~I~GPPGTGKT~Tl  218 (649)
T KOG1803         202 DLLIIHGPPGTGKTRTL  218 (649)
T ss_pred             CCEEEECCCCCCCEEEH
T ss_conf             83575579988840439


No 465
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.87  E-value=0.041  Score=34.32  Aligned_cols=31  Identities=35%  Similarity=0.610  Sum_probs=23.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCH
Q ss_conf             1003787425888999974246997020585
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG  214 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~  214 (647)
                      +.|+||+|+|||-|++.+..+..-.+++++.
T Consensus         4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~   34 (180)
T TIGR03263         4 IVISGPSGVGKSTLVKALLEEDPNLKFSISA   34 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9998999889999999999768994488704


No 466
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.83  E-value=0.095  Score=31.64  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHH--------HH---HHHHHHHHHCCHHEEHHH
Q ss_conf             331100378742588899997424699702058578864442033245--------99---999999873780120632
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASR--------VR---DMFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~--------vr---~lf~~a~~~~p~iifiDe  248 (647)
                      .|-|-+.||-.||||.|++++|.--+.++--.-|-+|+.-+.|-+++-        ++   +.-+.|.+.+|.|+|||-
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~v~fiDT   86 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANKVAFIDT   86 (187)
T ss_pred             HEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             5135564576657179999999996887312778999999848964231043899986157888898727784599734


No 467
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.79  E-value=0.04  Score=34.36  Aligned_cols=182  Identities=16%  Similarity=0.212  Sum_probs=86.9

Q ss_pred             HHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCH-H---HHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99999970991599998897999995798069998268827-9---999999-779828998568652189999999999
Q gi|254780545|r   30 QFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGS-K---LLDKLQ-SKDIEISSRPVNDGSPGLLSYLGSWFP  104 (647)
Q Consensus        30 eFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~-~---l~~~L~-e~~V~v~~~~~~~~s~~~~~iL~~~LP  104 (647)
                      ++..+|++-.|.+|.|++..-..+-..|...  ...+..+. .   +...+- ..+-.++..     .+.    +..-||
T Consensus        26 ~l~~~L~Dp~VtEI~iN~~~~Vwver~G~~~--~~~~~l~~~~~~~~i~~lA~~~g~~i~~~-----~Pi----~da~Lp   94 (320)
T PRK13894         26 ELLAALNDPKTVEIMLNADGKLWLERLGEPM--RCIGTLRVAQAQAIIETIAGYHGKEVTRS-----KPI----LEGELP   94 (320)
T ss_pred             HHHHHHCCCCCEEEEECCCCEEEEEECCEEE--ECCCCCCHHHHHHHHHHHHHHHCCEECCC-----CCE----EEEEEC
T ss_conf             8999717999679998699959999489058--51676899999999999999809874678-----966----999908


Q ss_pred             HHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999985167----78877767663210000112422569889852889999999998743356766420123
Q gi|254780545|r  105 LVLVVLVWMFLMRQIQG----GGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI  180 (647)
Q Consensus       105 liLli~i~~fl~rr~~g----Gg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~  180 (647)
                      +   -      -.|.+.    --.+..+++-|       +.....|.+|.....-.-.   +..+||+       .-++-
T Consensus        95 ~---d------G~R~~~~~pP~~~~~~~sIRk-------~~~~~~tL~dlv~~G~~~~---~~a~~L~-------~~V~~  148 (320)
T PRK13894         95 L---D------GSRFAGQLPPVVPAPTFAIRK-------KAVAIFTLDQYVERGIMTA---EQREAII-------AAVRA  148 (320)
T ss_pred             C---C------CEEEEEECCCCCCCCEEEEEC-------CCCCCCCHHHHHHCCCCCH---HHHHHHH-------HHHHC
T ss_conf             9---9------889999878878996599968-------6899999999987699999---9999999-------99972


Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCC-HHHH-------HHHHHHCCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf             33110037874258889999742469-----9702058-5788-------644420332459999999987378012063
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTIS-GSDF-------VELFVGVGASRVRDMFEQAKNNSPCIVFVD  247 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~-~s~~-------~~~~~g~g~~~vr~lf~~a~~~~p~iifiD  247 (647)
                      -+.+|..|+.|+|||-|.+|+.++.-     --.+.+- ..++       +.++ ..++-..++|.+.|-...|--|++-
T Consensus       149 r~nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL~~~~~n~v~~~-~~~~vt~~~Ll~~aLR~rPDRIivG  227 (320)
T PRK13894        149 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYH-TSIDVNMTALLKTTLRMRPDRILVG  227 (320)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf             875899858886568999999863202695201775258788078777735764-4788689999999736799858766


Q ss_pred             HH
Q ss_conf             23
Q gi|254780545|r  248 EI  249 (647)
Q Consensus       248 ei  249 (647)
                      |+
T Consensus       228 Ev  229 (320)
T PRK13894        228 EV  229 (320)
T ss_pred             CC
T ss_conf             54


No 468
>PRK10646 putative ATPase; Provisional
Probab=93.79  E-value=0.046  Score=33.94  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             0123331--10037874258889999742469970
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPF  209 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f  209 (647)
                      +..++.|  ++|.|+=|.|||.|+|+++...|+.-
T Consensus        22 a~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~   56 (153)
T PRK10646         22 AKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQG   56 (153)
T ss_pred             HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             97689997999988887899999999999849978


No 469
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=93.73  E-value=0.023  Score=36.13  Aligned_cols=23  Identities=39%  Similarity=0.758  Sum_probs=19.8

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             10037874258889999742469
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +++.||||+|||-|.+.++.++.
T Consensus         2 i~ITG~pGvGKTTli~kv~~~l~   24 (168)
T pfam03266         2 IFITGPPGVGKTTLVKKVIELLK   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89978999889999999999998


No 470
>cd04160 Arfrp1 Arfrp1 subfamily.  Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif.  Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes.  It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network.  Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D.  Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.73  E-value=0.15  Score=30.22  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=36.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCC-CCCCEE------CCCHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCHHEEH-
Q ss_conf             100378742588899997424-699702------0585788---------64442033245999999998737801206-
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGE-ANVPFF------TISGSDF---------VELFVGVGASRVRDMFEQAKNNSPCIVFV-  246 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e-~~~~f~------~~~~s~~---------~~~~~g~g~~~vr~lf~~a~~~~p~iifi-  246 (647)
                      |++.|++|+|||-|-+.+... ....+.      .+-|.++         +..|-=-|..+.|.+...--+.+-+|||+ 
T Consensus         2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~Vv   81 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVI   81 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99999999888899998875036767776554035313268999989999999968987888789987428987899998


Q ss_pred             H
Q ss_conf             3
Q gi|254780545|r  247 D  247 (647)
Q Consensus       247 D  247 (647)
                      |
T Consensus        82 D   82 (167)
T cd04160          82 D   82 (167)
T ss_pred             E
T ss_conf             6


No 471
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72  E-value=0.042  Score=34.21  Aligned_cols=29  Identities=31%  Similarity=0.683  Sum_probs=23.1

Q ss_pred             HCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             0123331--1003787425888999974246
Q gi|254780545|r  177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ...+++|  +-+.||+|||||.|.|++||-.
T Consensus        19 s~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~   49 (235)
T cd03299          19 SLEVERGDYFVILGPTGSGKSVLLETIAGFI   49 (235)
T ss_pred             EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             8798899899999999635999999997499


No 472
>PRK01184 hypothetical protein; Provisional
Probab=93.71  E-value=0.045  Score=34.01  Aligned_cols=32  Identities=28%  Similarity=0.712  Sum_probs=26.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf             10037874258889999742469970205857886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV  218 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~  218 (647)
                      |-|.|+||+||+..|+ ++.+.|+|.++.+  +.+
T Consensus         4 IGlTG~iGSGKstva~-i~~e~G~~vi~~~--Div   35 (183)
T PRK01184          4 IIVTGMPGSGKGEFSK-IARELGIPVVVMG--DVI   35 (183)
T ss_pred             EEEECCCCCCHHHHHH-HHHHCCCEEEECC--HHH
T ss_conf             9996899887899999-9997799399860--778


No 473
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70  E-value=0.043  Score=34.13  Aligned_cols=31  Identities=48%  Similarity=0.786  Sum_probs=24.1

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ....+++|  +-+.||+|||||.|.+.++|=-.
T Consensus        21 is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~   53 (239)
T cd03296          21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             386988998999999999779999999976999


No 474
>cd03290 ABCC_SUR1_N The SUR domain 1.  The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.68  E-value=0.033  Score=34.97  Aligned_cols=34  Identities=38%  Similarity=0.664  Sum_probs=24.1

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ...+-.++|+|  +-+.||+|||||-|.++++|...
T Consensus        17 L~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~   52 (218)
T cd03290          17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             647699986999999999999809999999855565


No 475
>PRK13768 GTPase; Provisional
Probab=93.65  E-value=0.043  Score=34.13  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             3331100378742588899997424
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      ++.+++..||||+|||.+.+++...
T Consensus         1 M~~~~~ViGpaGSGKsT~~~~l~~~   25 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLVGALSDW   25 (253)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9718999899999889999999999


No 476
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment.  ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62  E-value=0.045  Score=33.98  Aligned_cols=32  Identities=31%  Similarity=0.581  Sum_probs=24.6

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .+...+++|  +-+.||+|||||.|.+.++|=..
T Consensus        19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~   52 (242)
T cd03295          19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             0276886998999999999569999999975999


No 477
>smart00178 SAR Sar1p-like members of the Ras-family  of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.57  E-value=0.14  Score=30.42  Aligned_cols=105  Identities=20%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH-HHH
Q ss_conf             3331100378742588899997424699702058578864---------442033245999999998737801206-323
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV-DEI  249 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi-Dei  249 (647)
                      -+.-||+.|-.|.|||-+-..+.++.-.....+.|....+         .|---|..++|.+...--..+-+|||+ |--
T Consensus        16 ke~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~~Yy~~~~~iIfVVDss   95 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY   95 (184)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             61479999658898899999980699753057878864899999999999988987778899998821675899997268


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             5641445578988626889889989985303235778299996298100
Q gi|254780545|r  250 DAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV  298 (647)
Q Consensus       250 da~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~  298 (647)
                      |   +.|       -+|....|..+|.+-+  -.+..++|+|  |.-|.
T Consensus        96 D---~~r-------~~eak~~L~~ll~~~~--l~~~PlLila--NKqDl  130 (184)
T smart00178       96 D---KER-------FAESKRELDALLSDEE--LATVPFLILG--NKIDA  130 (184)
T ss_pred             C---HHH-------HHHHHHHHHHHHHHHH--HCCCCEEEEE--ECCCC
T ss_conf             6---889-------9999999999864676--5597099999--75677


No 478
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.55  E-value=0.12  Score=31.03  Aligned_cols=15  Identities=13%  Similarity=0.377  Sum_probs=6.1

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             899999999999878
Q gi|254780545|r  454 TYVWMTSRLTILMGG  468 (647)
Q Consensus       454 tk~~l~~~i~v~LgG  468 (647)
                      ....+...+.+.+.+
T Consensus       571 ~~~~i~~~~l~~~~~  585 (845)
T COG1643         571 RAPWIIAALLVQTSA  585 (845)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             658899999875313


No 479
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=93.55  E-value=0.052  Score=33.54  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=6.4

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             5689997501368
Q gi|254780545|r  379 QEFEDAKDKILMG  391 (647)
Q Consensus       379 ~dl~~A~~rv~~G  391 (647)
                      .|+...+++...|
T Consensus       455 ~dl~~~l~~~~~~  467 (812)
T PRK11664        455 SDLSVALSRNQPG  467 (812)
T ss_pred             CCHHHHHHHHCCC
T ss_conf             4799998653434


No 480
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54  E-value=0.047  Score=33.86  Aligned_cols=30  Identities=43%  Similarity=0.653  Sum_probs=23.7

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             20123331--1003787425888999974246
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +...+++|  +-+.||+|||||.|.++++|=.
T Consensus        19 vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~   50 (232)
T cd03300          19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             17488799899999999983999999997799


No 481
>PRK08694 consensus
Probab=93.54  E-value=0.24  Score=28.74  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCCC------CCCEECCC
Q ss_conf             01233311003787425888999974246------99702058
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGEA------NVPFFTIS  213 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e~------~~~f~~~~  213 (647)
                      |.++-.=+++-|-||.|||-||--+|..+      .|-|||.-
T Consensus       214 Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLE  256 (468)
T PRK08694        214 GLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSME  256 (468)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             8887847999617865378999999999998479847997788


No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.53  E-value=0.61  Score=25.78  Aligned_cols=67  Identities=25%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
Q ss_conf             99999998737801206323564144557898862688988998998530323577829999629810088333165642
Q gi|254780545|r  230 RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF  309 (647)
Q Consensus       230 r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf  309 (647)
                      |-...+|-.+.|.||+-||=-+        .-  ..+..+.+-.||.++   ....|..+|-+|..|+.-.       +.
T Consensus       150 RVAIARAL~~~P~iilADEPTg--------nL--D~~t~~~V~~ll~~~---~~~~g~tii~VTHD~~lA~-------~~  209 (226)
T COG1136         150 RVAIARALINNPKIILADEPTG--------NL--DSKTAKEVLELLREL---NKERGKTIIMVTHDPELAK-------YA  209 (226)
T ss_pred             HHHHHHHHHCCCCEEEEECCCC--------CC--CHHHHHHHHHHHHHH---HHHCCCEEEEECCCHHHHH-------HC
T ss_conf             9999999824998699607666--------58--867899999999999---8746989999908989997-------48


Q ss_pred             CCEEEEC
Q ss_conf             3141000
Q gi|254780545|r  310 DRQITVP  316 (647)
Q Consensus       310 d~~i~~~  316 (647)
                      ||.|++.
T Consensus       210 dr~i~l~  216 (226)
T COG1136         210 DRVIELK  216 (226)
T ss_pred             CEEEEEE
T ss_conf             9899984


No 483
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.51  E-value=0.04  Score=34.40  Aligned_cols=24  Identities=8%  Similarity=0.034  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999989999999999988
Q gi|254780545|r  553 YQKAKSIIQEKNDNFVAIAEALLE  576 (647)
Q Consensus       553 y~~a~~iL~~n~~~l~~la~~Lle  576 (647)
                      |.-+.=++.-.|.-|+.+|..++.
T Consensus       486 y~Gtvl~VSHDr~fl~~~~~~~~~  509 (632)
T PRK11147        486 YQGTLLLVSHDRQFVDNTVTECWI  509 (632)
T ss_pred             CCCEEEEEECCHHHHHHHCCEEEE
T ss_conf             898399997989999853456999


No 484
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491   This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome.    ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=93.50  E-value=0.032  Score=35.11  Aligned_cols=134  Identities=23%  Similarity=0.379  Sum_probs=81.0

Q ss_pred             CHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCC--------CCCCCCEEEEEECC----CCCCCCHHHCCCC
Q ss_conf             80120632356414455789886268-89889989985303--------23577829999629----8100883331656
Q gi|254780545|r  241 PCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDG--------FESSEGVILIAATN----RPDVLDAALLRPG  307 (647)
Q Consensus       241 p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg--------~~~~~~v~vi~aTn----~~~~lD~al~Rpg  307 (647)
                      --||||||||=||.+-+.+  +++|- ||=+==-||=-..|        .-.++.|+.|||=-    +|..|=|-|-  |
T Consensus       269 ~GiiFIDEIDKIa~~~~e~--S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQ--G  344 (463)
T TIGR00390       269 SGIIFIDEIDKIAKKGKES--SGADVSREGVQRDLLPIVEGSTVNTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQ--G  344 (463)
T ss_pred             CCCEEEECCHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCHHH--C
T ss_conf             7828985303542168886--78887655651011420226664310010422157876752320277766663110--6


Q ss_pred             CCCCEEEECHHHHHHHHHHHHH--------HHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             4231410001347889999999--------85488777321102454412037989999999998764553202421045
Q gi|254780545|r  308 RFDRQITVPNPDIVGREHILMV--------HSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQ  379 (647)
Q Consensus       308 Rfd~~i~~~~P~~~~r~~i~~~--------~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~  379 (647)
                      ||--+++..--+.+.=..||.-        |-.=+. .++|+++        ||---|..|. |+|.++ -...+.|.-.
T Consensus       345 RfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~-~eGv~i~--------F~d~AI~~iA-e~ay~~-N~~teniGAR  413 (463)
T TIGR00390       345 RFPIRVELEALTVDDFERILTEPKNSLIKQYQALLK-VEGVNIE--------FSDEAIKKIA-ELAYNV-NQKTENIGAR  413 (463)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCEE--------ECHHHHHHHH-HHHHHH-CCCCCCCCCC
T ss_conf             673778767632999999620834368999999887-6276403--------3556899999-999981-6442334650


Q ss_pred             HHHHHHHHCC
Q ss_conf             6899975013
Q gi|254780545|r  380 EFEDAKDKIL  389 (647)
Q Consensus       380 dl~~A~~rv~  389 (647)
                      -|.--++|++
T Consensus       414 RLHTv~E~ll  423 (463)
T TIGR00390       414 RLHTVLERLL  423 (463)
T ss_pred             HHHHHHHHHH
T ss_conf             4668999999


No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.49  E-value=0.049  Score=33.74  Aligned_cols=32  Identities=41%  Similarity=0.577  Sum_probs=25.3

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             420123331--10037874258889999742469
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      .+...+++|  +-+.||.|||||.|.++++|-..
T Consensus        23 dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (228)
T cd03257          23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             6078986998999999999869999999972898


No 486
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45  E-value=0.044  Score=34.06  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=19.3

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             1003787425888999974246
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +-+.||+|||||.|.+.+||=.
T Consensus        26 ~~iiGpSGsGKSTll~~i~GL~   47 (214)
T cd03297          26 TGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999999735999999998499


No 487
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=93.42  E-value=0.42  Score=26.98  Aligned_cols=29  Identities=31%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             HCCCCCCE--EECCCCCHHHHHHHHHHHCCC
Q ss_conf             01233311--003787425888999974246
Q gi|254780545|r  177 GGRIPHGV--LLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       177 g~~~p~g~--ll~GppGtGKTlla~a~a~e~  205 (647)
                      -..+++|=  =|.||-|.|||.+-+.++|-.
T Consensus        25 s~~V~~Gei~gllGpNGAGKTTli~~l~Gl~   55 (304)
T PRK13537         25 SFHVQPGECFGLLGPNGAGKTTTLKMLLGLT   55 (304)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             7788699599999998972999999997795


No 488
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=93.41  E-value=0.049  Score=33.70  Aligned_cols=55  Identities=24%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             2422569889-8528899999999987433567664201233311003787425888999974246
Q gi|254780545|r  141 NVGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       141 ~~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~  205 (647)
                      ++++.++.|+ .|.+.....+.+-|++          -.++=+=+-+.||+|||||-|++.++|=.
T Consensus       356 ~~p~L~~~~ls~~~pg~~~~vl~~V~L----------~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l  411 (566)
T TIGR02868       356 DKPTLELRDLSVGYPGAPPNVLDGVSL----------DLPPGERVAILGPSGSGKSTLLATLAGLL  411 (566)
T ss_pred             CCCEEEEEEEEEECCCCCHHHHCCCCC----------CCCCCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             875078987765269873465427864----------11388608986688765789999998402


No 489
>cd01882 BMS1 Bms1.  Bms1 is an essential, evolutionarily conserved, nucleolar protein.  Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.  Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit.  The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly.  It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=93.37  E-value=0.096  Score=31.62  Aligned_cols=70  Identities=26%  Similarity=0.417  Sum_probs=40.1

Q ss_pred             HCCCCCCEEECCCCCHHHHHHHHHHHCC-CCCCEECCCHH-------HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf             0123331100378742588899997424-69970205857-------88644420332459999999987378012063
Q gi|254780545|r  177 GGRIPHGVLLVGPPGTGKTLLARAVAGE-ANVPFFTISGS-------DFVELFVGVGASRVRDMFEQAKNNSPCIVFVD  247 (647)
Q Consensus       177 g~~~p~g~ll~GppGtGKTlla~a~a~e-~~~~f~~~~~s-------~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiD  247 (647)
                      .-.||-=|-..||||+|||.|-|.+... .+-+.-.+.|+       .-.=-|+-. ..-+..+-+.|+-.-=+++.||
T Consensus        35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc-~nDi~smiD~AKvADlVLl~iD  112 (225)
T cd01882          35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIEC-PNDINAMIDIAKVADLVLLLID  112 (225)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEC-CCHHHHHHHHHHHHHEEEEEEC
T ss_conf             89999699998989977889999999998544375578887999468426899974-8609999878876433688861


No 490
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.36  E-value=0.052  Score=33.55  Aligned_cols=31  Identities=35%  Similarity=0.616  Sum_probs=23.6

Q ss_pred             HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf             6420123331--100378742588899997424
Q gi|254780545|r  174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e  204 (647)
                      ..+...+|+|  +.+.||.|||||-|+|.++|=
T Consensus        26 ~~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl   58 (269)
T PRK13648         26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             645899859989999999999799999999649


No 491
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.35  E-value=0.053  Score=33.47  Aligned_cols=31  Identities=48%  Similarity=0.811  Sum_probs=24.7

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             20123331--10037874258889999742469
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      ....+++|  +-|.||.|||||.|.|++||-..
T Consensus        21 vsl~i~~GE~~~llGpSGsGKSTLlr~iaGL~~   53 (352)
T PRK10851         21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH   53 (352)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             376999998999999998469999999976999


No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=93.33  E-value=0.13  Score=30.73  Aligned_cols=193  Identities=20%  Similarity=0.287  Sum_probs=113.4

Q ss_pred             HHHCCEEEEEEECCEEEEEEECCCEE--EEEEECC---CCHHHHHHHHHCCCEEE--EEECCC-CCHHHHHHHHH-----
Q ss_conf             97099159999889799999579806--9998268---82799999997798289--985686-52189999999-----
Q gi|254780545|r   35 VDAGRVRKISVIGTHITGFYVNGESS--FQTYMPL---VGSKLLDKLQSKDIEIS--SRPVND-GSPGLLSYLGS-----  101 (647)
Q Consensus        35 Le~g~V~sV~I~~~~i~~~~~~g~~~--~~t~~p~---~~~~l~~~L~e~~V~v~--~~~~~~-~s~~~~~iL~~-----  101 (647)
                      |++..|.+|-|+......++.+....  .....|.   .+-+....|-..=..++  .+...+ ..+.+..-|..     
T Consensus         2 L~~~~v~EI~iNrP~eVW~lE~~~gw~~~~~d~P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~RvQ   81 (328)
T TIGR02788         2 LDDEDVTEICINRPGEVWVLEGRGGWRTQRFDVPERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERVQ   81 (328)
T ss_pred             CCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf             78888407999869179999568965888872675224418999999999887653786201022863788869994799


Q ss_pred             -HHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHH-----------------HHHHHHHHHHHHH
Q ss_conf             -99999999999999985167788-7776766321000011242256988-----------------9852889999999
Q gi|254780545|r  102 -WFPLVLVVLVWMFLMRQIQGGGA-RGAMGFGKSKAKLLSGNVGSVTFKD-----------------VAGVDEAKEDLQE  162 (647)
Q Consensus       102 -~LPliLli~i~~fl~rr~~gGg~-~~~msfGKSkAk~~~~~~~~v~f~d-----------------v~g~~~~k~~~~~  162 (647)
                       .+|....              ++ .-.+++-|       |...+.+++|                 -..+.+..++|.|
T Consensus        82 ~V~PPAc~--------------~~eTvs~tIRK-------pS~~~~sL~dy~~~G~F~~ar~~~~~~~~~~~d~~~~L~e  140 (328)
T TIGR02788        82 IVIPPACE--------------NDETVSITIRK-------PSLVDLSLDDYEEKGFFDTARAVVVPASTELSDKDEELLE  140 (328)
T ss_pred             EEECCCCC--------------CCCEEEEEEEC-------CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             98068758--------------98858999952-------6444554799962798544777631443443468999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCH-HHHHHHH----HHCCHH
Q ss_conf             9987433567664201233311003787425888999974246----------997020585-7886444----203324
Q gi|254780545|r  163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISG-SDFVELF----VGVGAS  227 (647)
Q Consensus       163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~-s~~~~~~----~g~g~~  227 (647)
                      ..+- .+-+.|-++-+.--|-|+++|-+|+|||-+-||+-++-          +++=+.++. +.-|-++    ||.|.+
T Consensus       141 l~~~-g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~  219 (328)
T TIGR02788       141 LLDA-GDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSA  219 (328)
T ss_pred             HHHC-CCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             9862-888799999987389199990689718999999973276225278885201147888986456553464234435


Q ss_pred             H--HHHHHHHHHHHCCHHEEHHHH
Q ss_conf             5--999999998737801206323
Q gi|254780545|r  228 R--VRDMFEQAKNNSPCIVFVDEI  249 (647)
Q Consensus       228 ~--vr~lf~~a~~~~p~iifiDei  249 (647)
                      +  ..+|-+.+=+..|==||+=|+
T Consensus       220 ~vt~~~Ll~scLRMrPDRI~LgEL  243 (328)
T TIGR02788       220 KVTPKDLLESCLRMRPDRILLGEL  243 (328)
T ss_pred             CCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf             689899999971177405767430


No 493
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=93.30  E-value=0.094  Score=31.67  Aligned_cols=53  Identities=26%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             1003787425888999974246---99702058578864442033245999999998737801206323564
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~  252 (647)
                      .+++.|+|+|||.++-+++.+.   +-.++.+..+              +.|.++..+.-  +|++||..-.
T Consensus        21 ~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~--------------~~L~~Q~~~~~--lii~DE~H~~   76 (103)
T pfam04851        21 GLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPR--------------KDLLEQALEEF--VIIIDEAHHS   76 (103)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC--------------HHHHHHHHHHH--HHHHHHHHHC
T ss_conf             69995899987999999999998469929999082--------------99999999965--6460163523


No 494
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.27  E-value=0.057  Score=33.24  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.2

Q ss_pred             CCEEECCCCCHHHHHHHHHHHCC
Q ss_conf             31100378742588899997424
Q gi|254780545|r  182 HGVLLVGPPGTGKTLLARAVAGE  204 (647)
Q Consensus       182 ~g~ll~GppGtGKTlla~a~a~e  204 (647)
                      --+++.||+||||+.|-|++|.=
T Consensus        30 e~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC
T ss_conf             54887678876688999999813


No 495
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=93.26  E-value=0.044  Score=34.06  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCC
Q ss_conf             1003787425888999974246
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEA  205 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~  205 (647)
                      +++.||||+|||.|+..++..+
T Consensus        18 ~~I~g~~g~GKt~l~~~i~~~~   39 (213)
T pfam00006        18 IGIFGGSGTGKTVLLGMIARNA   39 (213)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             7787899998899999999856


No 496
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases.  Arf proteins are activators of phospholipase D isoforms.  Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated.  Arfs are N-terminally myristoylated.  Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner.  They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site.  Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins.  Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus.  Most other Arf family proteins are so far relatively poorly characterized.  Thu
Probab=93.26  E-value=0.21  Score=29.19  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf             10037874258889999742469970205857886---------4442033245999999998737801206
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV  246 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi  246 (647)
                      |++.|+||+|||-|-+.+.+..-.....+-|.++.         ..|-=-|..+.|.+...--+.+-++||.
T Consensus         2 i~ilG~~~vGKTsll~~l~~~~~~~~~pTig~~~~~i~~~~~~l~iwDt~G~~~~~~~~~~y~~~a~~~i~V   73 (158)
T cd00878           2 ILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV   73 (158)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf             999999999889999999539988744560740899984889999998899722144899872768776899


No 497
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.26  E-value=0.05  Score=33.65  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=26.9

Q ss_pred             HHHHHCCCCCC-------EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331-------10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG-------VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g-------~ll~GppGtGKTlla~a~a~e~~  206 (647)
                      +..+-..+++|       +-|.||.|||||-|.|.++|-..
T Consensus        10 l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~   50 (246)
T cd03237          10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             15068985688465798999997999769999999977878


No 498
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.25  E-value=0.056  Score=33.30  Aligned_cols=20  Identities=50%  Similarity=0.903  Sum_probs=0.0

Q ss_pred             EEECCCCCHHHHHHHHHHHC
Q ss_conf             10037874258889999742
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG  203 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~  203 (647)
                      +-|.||.|||||.|.+.+||
T Consensus        46 ~~llGpSGsGKSTLlr~iaG   65 (378)
T PRK09452         46 LTLLGPSGCGKTTVLRLIAG   65 (378)
T ss_pred             EEEECCCCCHHHHHHHHHHC
T ss_conf             99998999769999999976


No 499
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily.  This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins.  Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation.  Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state.  GDP/GTP exchange exposes the helix, which anchors to the membrane.  Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein.  A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site.  Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned.  Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI.  It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins.  Humans, but not rodents
Probab=93.23  E-value=0.16  Score=30.05  Aligned_cols=104  Identities=20%  Similarity=0.310  Sum_probs=0.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf             100378742588899997424699702058578864---------44203324599999999873780120632356414
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR  254 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~  254 (647)
                      +|+.|.+|.|||.|-+.+-..--.+-..+.|.++..         .|---|..+.|.+...--+.+-+|||+  +|    
T Consensus         3 ililG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~V--vD----   76 (159)
T cd04150           3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV--VD----   76 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEE--EE----
T ss_conf             999999999989999999729967758968701799998989999997899721465678647687389999--97----


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             4557898862688988998998530323577829999629810088
Q gi|254780545|r  255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD  300 (647)
Q Consensus       255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD  300 (647)
                             ..+.++-+..-..|.++=.-....++.++-.-|..|.-+
T Consensus        77 -------~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~  115 (159)
T cd04150          77 -------SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             -------CCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCC
T ss_conf             -------777789999999999996235336982999997566778


No 500
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.22  E-value=0.45  Score=26.77  Aligned_cols=118  Identities=24%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----------------------------------------------
Q ss_conf             420123331100378742588899997424699-----------------------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----------------------------------------------  207 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----------------------------------------------  207 (647)
                      .+-+++-+-+-++||+|||||-|..+++|....                                               
T Consensus       341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~  420 (559)
T COG4988         341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP  420 (559)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCC
T ss_conf             06754896799988999978999999847577778448889931000687788867246279984056418877731687


Q ss_pred             -----------------CEECCCHHHHHHHHHHCCHH------HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf             -----------------70205857886444203324------5999999998737801206323564144557898862
Q gi|254780545|r  208 -----------------PFFTISGSDFVELFVGVGAS------RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN  264 (647)
Q Consensus       208 -----------------~f~~~~~s~~~~~~~g~g~~------~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~  264 (647)
                                       .|+..  ++=...-+|+|-+      +-|-.-.+|=-+-+.++++||--|          +-.
T Consensus       421 ~~s~e~i~~al~~a~l~~~v~~--p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA----------~LD  488 (559)
T COG4988         421 DASDEEIIAALDQAGLLEFVPK--PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA----------HLD  488 (559)
T ss_pred             CCCHHHHHHHHHHHCHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC----------CCC
T ss_conf             6789999999998257876167--7764330215888778999999999998558888898548756----------798


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf             6889889989985303235778299996298100883331656423141000
Q gi|254780545|r  265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP  316 (647)
Q Consensus       265 ~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~  316 (647)
                      -|.|+.+-+.|.++-     ++-.|+-+|.|+..+-       +-|+.+.++
T Consensus       489 ~etE~~i~~~l~~l~-----~~ktvl~itHrl~~~~-------~~D~I~vld  528 (559)
T COG4988         489 AETEQIILQALQELA-----KQKTVLVITHRLEDAA-------DADRIVVLD  528 (559)
T ss_pred             HHHHHHHHHHHHHHH-----HCCEEEEEECCHHHHH-------CCCEEEEEC
T ss_conf             767999999999997-----2786999976737785-------499899964


Done!