Query gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 647
No_of_seqs 318 out of 4649
Neff 6.5
Searched_HMMs 39220
Date Mon May 30 00:50:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780545.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01241 FtsH_fam ATP-depende 100.0 0 0 1683.8 33.4 497 94-590 1-505 (505)
2 PRK10733 hflB ATP-dependent me 100.0 0 0 1480.9 59.6 609 2-612 7-616 (644)
3 CHL00176 ftsH cell division pr 100.0 0 0 1434.4 57.7 575 21-598 41-625 (631)
4 COG0465 HflB ATP-dependent Zn 100.0 0 0 1289.9 49.6 572 20-596 19-595 (596)
5 KOG0731 consensus 100.0 0 0 1154.8 43.3 565 23-597 163-754 (774)
6 KOG0734 consensus 100.0 0 0 1136.4 35.1 476 101-593 260-736 (752)
7 COG1222 RPT1 ATP-dependent 26S 100.0 0 0 634.6 20.2 257 138-394 141-398 (406)
8 PRK03992 proteasome-activating 100.0 0 0 629.3 22.0 259 139-397 123-382 (390)
9 TIGR01242 26Sp45 26S proteasom 100.0 0 0 627.4 14.4 253 137-389 111-364 (364)
10 KOG0730 consensus 100.0 0 0 592.3 20.8 247 139-388 425-674 (693)
11 KOG0733 consensus 100.0 0 0 564.1 20.1 230 139-371 181-414 (802)
12 TIGR01243 CDC48 AAA family ATP 100.0 0 0 528.4 15.8 234 139-373 532-766 (980)
13 KOG0736 consensus 100.0 0 0 514.7 18.3 258 139-405 663-942 (953)
14 KOG0733 consensus 100.0 0 0 511.3 16.1 256 140-405 503-779 (802)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 0 0 482.8 19.7 240 141-388 221-463 (491)
16 TIGR01243 CDC48 AAA family ATP 100.0 0 0 483.3 18.9 372 141-523 199-692 (980)
17 KOG0729 consensus 100.0 0 0 481.4 12.4 260 137-396 166-426 (435)
18 KOG0738 consensus 100.0 0 0 468.5 19.7 260 139-408 203-487 (491)
19 KOG0726 consensus 100.0 0 0 476.7 12.9 253 140-392 177-430 (440)
20 KOG0727 consensus 100.0 0 0 470.1 17.5 250 140-389 147-397 (408)
21 COG0464 SpoVK ATPases of the A 100.0 0 0 467.2 18.9 246 140-388 234-483 (494)
22 KOG0652 consensus 100.0 0 0 471.7 14.2 252 139-390 162-414 (424)
23 KOG0728 consensus 100.0 0 0 460.8 17.9 251 140-390 139-390 (404)
24 KOG0735 consensus 100.0 0 0 461.5 16.6 228 142-372 661-889 (952)
25 COG1223 Predicted ATPase (AAA+ 100.0 0 0 441.8 17.3 242 139-387 112-354 (368)
26 pfam01434 Peptidase_M41 Peptid 100.0 0 0 430.2 20.0 192 397-588 1-192 (192)
27 KOG0737 consensus 100.0 0 0 409.0 15.9 250 136-390 80-334 (386)
28 KOG0739 consensus 100.0 0 0 413.4 9.0 230 139-374 124-356 (439)
29 KOG0651 consensus 100.0 0 0 409.3 10.0 246 143-388 127-373 (388)
30 KOG0732 consensus 100.0 0 0 397.0 15.2 250 141-394 258-531 (1080)
31 KOG0730 consensus 100.0 0 0 383.6 17.6 238 142-390 179-418 (693)
32 KOG0741 consensus 100.0 0 0 380.0 13.4 298 131-435 200-544 (744)
33 KOG0740 consensus 100.0 1.4E-45 0 347.8 12.6 245 139-389 144-405 (428)
34 COG0464 SpoVK ATPases of the A 100.0 7.5E-32 1.9E-36 249.5 13.1 257 167-429 4-270 (494)
35 pfam00004 AAA ATPase family as 100.0 5.2E-32 1.3E-36 250.6 9.3 130 184-317 1-131 (131)
36 KOG0743 consensus 99.9 1.8E-25 4.6E-30 203.3 11.5 277 94-387 144-433 (457)
37 KOG0742 consensus 99.9 7.7E-25 2E-29 198.7 12.8 218 142-372 349-594 (630)
38 CHL00026 ycf2 Ycf2 99.9 3.9E-24 1E-28 193.6 13.5 309 175-497 1624-1996(2286)
39 CHL00179 consensus 99.9 2.1E-24 5.4E-29 195.5 10.9 312 175-500 1594-1968(2262)
40 CHL00178 consensus 99.9 7.3E-24 1.9E-28 191.7 11.0 308 175-496 1452-1829(2133)
41 KOG0736 consensus 99.9 1.3E-22 3.4E-27 182.5 14.1 229 162-397 412-668 (953)
42 KOG0744 consensus 99.9 1E-20 2.6E-25 168.9 13.7 236 143-385 133-411 (423)
43 cd00009 AAA The AAA+ (ATPases 99.8 2.8E-20 7.2E-25 165.7 10.5 129 179-317 17-151 (151)
44 CHL00181 cbbX CbbX; Provisiona 99.8 1.9E-18 4.9E-23 152.4 15.7 209 146-367 20-253 (287)
45 KOG0735 consensus 99.8 7.1E-19 1.8E-23 155.6 13.1 238 180-420 430-683 (952)
46 PRK04195 replication factor C 99.8 3.5E-17 8.8E-22 143.4 18.4 226 145-417 11-251 (403)
47 PRK13342 recombination factor 99.8 1.9E-17 4.9E-22 145.2 13.7 205 145-389 10-225 (417)
48 pfam05496 RuvB_N Holliday junc 99.7 2E-16 5.1E-21 137.8 12.3 191 145-368 21-229 (234)
49 PRK00080 ruvB Holliday junctio 99.7 1E-15 2.6E-20 132.8 15.7 225 145-407 22-265 (328)
50 PRK13341 recombination factor 99.7 3.1E-16 7.9E-21 136.5 10.3 201 145-387 25-246 (726)
51 COG2256 MGS1 ATPase related to 99.6 3.2E-15 8.1E-20 129.2 10.7 202 145-388 21-238 (436)
52 PRK00440 rfc replication facto 99.6 4.3E-14 1.1E-18 121.0 14.1 197 145-385 13-222 (318)
53 PRK05342 clpX ATP-dependent pr 99.6 4.2E-14 1.1E-18 121.1 11.8 145 136-281 59-215 (411)
54 PRK05201 hslU ATP-dependent pr 99.6 1.5E-13 3.8E-18 117.1 14.2 95 139-236 5-107 (442)
55 PRK00411 cdc6 cell division co 99.6 2.6E-13 6.7E-18 115.3 14.4 219 149-390 31-284 (394)
56 PRK12402 replication factor C 99.5 1.4E-13 3.5E-18 117.3 11.4 183 145-363 12-226 (337)
57 COG2255 RuvB Holliday junction 99.5 4.4E-13 1.1E-17 113.7 13.9 227 142-406 21-265 (332)
58 TIGR00763 lon ATP-dependent pr 99.5 1.1E-14 2.7E-19 125.4 5.4 207 147-371 410-668 (941)
59 PRK10787 DNA-binding ATP-depen 99.5 2.4E-13 6E-18 115.6 12.3 218 146-385 320-579 (784)
60 PRK05563 DNA polymerase III su 99.5 2.2E-13 5.5E-18 115.9 11.3 204 146-385 14-241 (541)
61 TIGR02397 dnaX_nterm DNA polym 99.5 2.6E-13 6.7E-18 115.3 11.7 203 146-385 12-241 (363)
62 KOG2028 consensus 99.5 4.1E-13 1.1E-17 113.9 12.3 207 145-388 135-368 (554)
63 PRK07270 DNA polymerase III su 99.5 5E-13 1.3E-17 113.2 12.0 204 145-384 12-240 (557)
64 TIGR00635 ruvB Holliday juncti 99.5 4.5E-13 1.1E-17 113.6 10.5 210 146-389 2-230 (305)
65 COG0714 MoxR-like ATPases [Gen 99.5 9.5E-14 2.4E-18 118.5 6.8 132 179-330 41-202 (329)
66 PRK13407 bchI magnesium chelat 99.5 9.7E-13 2.5E-17 111.2 11.7 154 146-330 6-215 (334)
67 PRK05896 DNA polymerase III su 99.5 2.6E-12 6.7E-17 108.0 13.4 207 142-385 11-241 (613)
68 PRK07133 DNA polymerase III su 99.5 5.5E-12 1.4E-16 105.7 14.6 204 146-385 16-240 (718)
69 smart00382 AAA ATPases associa 99.4 5.3E-13 1.4E-17 113.1 8.8 130 181-319 2-148 (148)
70 PRK08451 DNA polymerase III su 99.4 7.8E-12 2E-16 104.6 14.6 204 146-385 12-239 (523)
71 COG0466 Lon ATP-dependent Lon 99.4 1.7E-12 4.4E-17 109.3 11.0 164 148-332 323-509 (782)
72 PRK06674 DNA polymerase III su 99.4 1.4E-12 3.6E-17 110.0 10.4 205 145-385 13-241 (563)
73 PRK06645 DNA polymerase III su 99.4 4.5E-12 1.2E-16 106.3 13.0 221 135-398 12-261 (507)
74 TIGR03346 chaperone_ClpB ATP-d 99.4 1.3E-12 3.3E-17 110.3 9.8 159 146-329 171-347 (852)
75 TIGR02903 spore_lon_C ATP-depe 99.4 2.3E-13 5.9E-18 115.7 5.8 284 146-465 153-501 (616)
76 PRK06305 DNA polymerase III su 99.4 1.3E-11 3.2E-16 103.1 14.6 203 145-385 14-243 (462)
77 KOG2004 consensus 99.4 7.8E-13 2E-17 111.9 7.7 163 148-333 411-598 (906)
78 PRK06647 DNA polymerase III su 99.4 5.8E-12 1.5E-16 105.6 11.9 203 145-385 13-241 (560)
79 PRK10865 protein disaggregatio 99.4 3.8E-12 9.7E-17 106.9 9.6 160 146-330 176-353 (857)
80 TIGR02639 ClpA ATP-dependent C 99.4 2.1E-12 5.4E-17 108.7 8.0 159 146-329 206-384 (774)
81 TIGR02928 TIGR02928 orc1/cdc6 99.4 5.2E-11 1.3E-15 98.7 14.9 225 149-391 18-292 (383)
82 TIGR02902 spore_lonB ATP-depen 99.4 8.4E-12 2.1E-16 104.4 10.8 299 141-506 59-424 (532)
83 COG1224 TIP49 DNA helicase TIP 99.4 1.5E-11 3.9E-16 102.5 12.0 73 147-226 38-112 (450)
84 PRK11034 clpA ATP-dependent Cl 99.4 4.9E-12 1.3E-16 106.1 9.4 220 147-392 185-436 (758)
85 CHL00095 clpC Clp protease ATP 99.4 7.6E-12 2E-16 104.7 10.0 159 146-329 177-352 (823)
86 PRK10865 protein disaggregatio 99.3 7.8E-11 2E-15 97.4 14.4 159 149-332 569-780 (857)
87 PRK05564 DNA polymerase III su 99.3 3.2E-11 8.2E-16 100.2 12.2 173 145-352 1-183 (313)
88 CHL00081 chlI Mg-protoporyphyr 99.3 3.5E-11 8.9E-16 99.9 12.2 159 142-331 6-227 (347)
89 pfam07728 AAA_5 AAA domain (dy 99.3 1.9E-12 4.8E-17 109.1 4.7 110 183-309 1-139 (139)
90 PRK11034 clpA ATP-dependent Cl 99.3 2.4E-10 6E-15 93.9 15.2 124 150-296 460-608 (758)
91 TIGR03346 chaperone_ClpB ATP-d 99.3 1.2E-10 3E-15 96.1 13.6 125 149-296 566-718 (852)
92 COG0542 clpA ATP-binding subun 99.3 3.4E-11 8.7E-16 100.0 10.3 162 144-329 166-344 (786)
93 PRK07764 DNA polymerase III su 99.3 1.3E-10 3.4E-15 95.7 12.5 188 145-364 12-225 (775)
94 TIGR03345 VI_ClpV1 type VI sec 99.3 2.2E-10 5.7E-15 94.1 13.3 160 146-330 185-362 (852)
95 CHL00095 clpC Clp protease ATP 99.3 2.7E-10 7E-15 93.4 13.4 126 148-296 509-662 (823)
96 pfam07724 AAA_2 AAA domain (Cd 99.3 1.1E-11 2.9E-16 103.5 6.1 101 182-296 4-126 (168)
97 PRK00149 dnaA chromosomal repl 99.2 6.6E-10 1.7E-14 90.7 14.8 221 140-390 111-348 (447)
98 COG0542 clpA ATP-binding subun 99.2 6E-10 1.5E-14 91.0 14.2 126 148-296 491-644 (786)
99 pfam00308 Bac_DnaA Bacterial d 99.2 2.8E-10 7E-15 93.4 12.4 194 142-363 2-211 (219)
100 TIGR03345 VI_ClpV1 type VI sec 99.2 1.3E-10 3.3E-15 95.8 10.0 126 148-296 566-719 (852)
101 TIGR03420 DnaA_homol_Hda DnaA 99.2 7.8E-10 2E-14 90.2 13.1 206 142-384 9-224 (226)
102 KOG0989 consensus 99.2 1.2E-10 3E-15 96.1 8.2 178 145-360 33-227 (346)
103 PRK13765 ATP-dependent proteas 99.2 8.5E-10 2.2E-14 89.9 12.5 101 287-387 278-399 (637)
104 TIGR02881 spore_V_K stage V sp 99.2 4.5E-10 1.1E-14 91.9 11.0 224 146-382 4-254 (261)
105 PRK08853 DNA polymerase III su 99.2 6.1E-10 1.5E-14 90.9 11.3 196 146-382 14-238 (717)
106 COG1474 CDC6 Cdc6-related prot 99.2 1E-09 2.7E-14 89.2 12.4 215 150-388 19-265 (366)
107 COG0593 DnaA ATPase involved i 99.1 6E-09 1.5E-13 83.7 15.7 225 140-390 79-315 (408)
108 PRK09111 DNA polymerase III su 99.1 9.4E-10 2.4E-14 89.6 11.3 205 135-383 14-251 (600)
109 COG1219 ClpX ATP-dependent pro 99.1 6.2E-11 1.6E-15 98.1 5.0 144 136-281 48-203 (408)
110 pfam07726 AAA_3 ATPase family 99.1 2.5E-11 6.4E-16 101.0 1.9 110 183-309 1-129 (131)
111 TIGR02639 ClpA ATP-dependent C 99.1 3E-09 7.7E-14 85.9 12.2 175 141-333 475-707 (774)
112 COG0606 Predicted ATPase with 99.1 1.3E-09 3.2E-14 88.6 10.1 47 144-204 175-221 (490)
113 TIGR00382 clpX ATP-dependent C 99.1 1.1E-10 2.9E-15 96.2 4.5 173 139-318 91-311 (452)
114 PRK07003 DNA polymerase III su 99.1 2.4E-09 6E-14 86.7 11.0 186 145-364 13-224 (816)
115 COG2812 DnaX DNA polymerase II 99.1 8.1E-09 2.1E-13 82.8 13.6 187 145-368 13-228 (515)
116 PRK07994 DNA polymerase III su 99.1 7.4E-10 1.9E-14 90.3 8.3 183 146-364 14-224 (643)
117 PRK09112 DNA polymerase III su 99.1 2.6E-09 6.5E-14 86.4 11.1 181 145-355 20-237 (352)
118 PRK08691 DNA polymerase III su 99.1 7.9E-10 2E-14 90.1 8.2 185 146-364 14-224 (704)
119 KOG0741 consensus 99.1 5.5E-09 1.4E-13 84.0 12.3 139 180-328 537-683 (744)
120 PRK11331 5-methylcytosine-spec 99.0 7.6E-10 1.9E-14 90.2 7.7 130 177-321 190-362 (459)
121 PRK07940 DNA polymerase III su 99.0 3.9E-09 9.9E-14 85.1 11.2 183 146-355 3-212 (395)
122 PRK12323 DNA polymerase III su 99.0 1.3E-09 3.3E-14 88.6 8.1 202 145-383 13-244 (721)
123 KOG1942 consensus 99.0 1.6E-08 4E-13 80.7 13.6 72 147-225 37-110 (456)
124 COG1220 HslU ATP-dependent pro 99.0 1.3E-08 3.3E-13 81.3 12.8 90 146-238 12-109 (444)
125 PRK12422 chromosomal replicati 99.0 2E-08 5.2E-13 79.9 13.8 224 141-388 104-343 (455)
126 PRK08903 hypothetical protein; 99.0 5.2E-09 1.3E-13 84.2 10.5 170 184-385 45-223 (227)
127 PRK05642 DNA replication initi 99.0 3.5E-08 8.8E-13 78.2 14.4 209 141-385 12-232 (234)
128 PRK08084 DNA replication initi 99.0 3.8E-08 9.8E-13 77.9 14.3 202 142-385 16-233 (235)
129 pfam05673 DUF815 Protein of un 99.0 2.1E-08 5.3E-13 79.8 12.5 163 143-335 23-210 (248)
130 pfam01078 Mg_chelatase Magnesi 99.0 1.9E-09 4.9E-14 87.3 7.0 44 147-204 2-45 (207)
131 PRK11388 DNA-binding transcrip 99.0 2.4E-08 6.2E-13 79.3 12.3 212 142-386 319-569 (639)
132 PRK08770 DNA polymerase III su 98.9 4.9E-09 1.2E-13 84.4 8.3 201 146-383 14-239 (663)
133 PRK08058 DNA polymerase III su 98.9 1.2E-08 3E-13 81.7 9.7 152 145-328 2-179 (329)
134 PRK05648 DNA polymerase III su 98.9 1.1E-08 2.7E-13 81.9 9.0 201 145-383 13-239 (705)
135 KOG1969 consensus 98.9 1.1E-07 2.8E-12 74.7 14.2 199 145-373 268-520 (877)
136 PRK08727 hypothetical protein; 98.9 1.6E-07 4E-12 73.5 14.9 201 142-385 13-228 (233)
137 PRK09862 putative ATP-dependen 98.9 8E-08 2E-12 75.6 13.4 49 142-204 185-233 (506)
138 PRK06872 DNA polymerase III su 98.9 1.2E-08 3.2E-13 81.4 8.8 187 146-365 14-225 (696)
139 pfam05621 TniB Bacterial TniB 98.9 7.3E-08 1.9E-12 75.9 12.6 217 150-384 36-285 (302)
140 COG0470 HolB ATPase involved i 98.9 2.1E-08 5.2E-13 79.9 9.7 146 149-325 2-175 (325)
141 PRK07471 DNA polymerase III su 98.9 7.5E-09 1.9E-13 83.0 7.4 194 145-357 14-235 (363)
142 pfam06068 TIP49 TIP49 C-termin 98.9 2.9E-09 7.5E-14 86.0 5.3 81 148-236 24-106 (395)
143 PRK06893 DNA replication initi 98.8 2.7E-07 6.9E-12 71.8 13.8 178 182-385 40-227 (229)
144 PRK11361 acetoacetate metaboli 98.8 3.1E-07 7.8E-12 71.4 14.0 211 146-386 141-391 (457)
145 TIGR03015 pepcterm_ATPase puta 98.8 2.9E-07 7.5E-12 71.5 13.4 196 177-388 38-266 (269)
146 KOG1051 consensus 98.8 5.6E-08 1.4E-12 76.7 9.0 159 148-330 186-362 (898)
147 pfam00493 MCM MCM2/3/5 family. 98.8 4.9E-08 1.2E-12 77.2 8.5 158 149-329 25-219 (327)
148 KOG0745 consensus 98.7 2.1E-08 5.4E-13 79.8 5.7 120 182-302 227-364 (564)
149 PRK08116 hypothetical protein; 98.7 4.2E-08 1.1E-12 77.6 7.0 115 163-296 94-215 (262)
150 PRK08939 primosomal protein Dn 98.7 2.6E-08 6.6E-13 79.2 5.6 138 143-301 123-268 (306)
151 PRK10820 DNA-binding transcrip 98.7 5.2E-08 1.3E-12 76.9 6.4 208 143-381 199-440 (513)
152 PRK07399 DNA polymerase III su 98.7 3.2E-07 8.2E-12 71.2 10.2 181 146-359 2-221 (314)
153 COG2607 Predicted ATPase (AAA+ 98.7 1.4E-06 3.6E-11 66.5 13.3 167 141-337 53-245 (287)
154 PRK07952 DNA replication prote 98.6 1.1E-07 2.8E-12 74.6 7.4 131 144-296 65-202 (242)
155 PRK06620 hypothetical protein; 98.6 1.1E-06 2.7E-11 67.5 11.8 182 161-385 25-213 (214)
156 PRK04132 replication factor C 98.6 3.7E-08 9.4E-13 78.0 4.2 91 146-254 23-124 (863)
157 PRK09087 hypothetical protein; 98.6 1.2E-06 3E-11 67.2 11.7 199 142-387 15-221 (226)
158 COG1239 ChlI Mg-chelatase subu 98.6 3.5E-07 8.9E-12 71.0 8.9 228 142-421 11-306 (423)
159 PRK10365 transcriptional regul 98.6 2E-06 5.2E-11 65.4 12.0 206 150-385 141-386 (441)
160 KOG1514 consensus 98.6 1.7E-06 4.4E-11 65.9 11.6 195 183-390 424-657 (767)
161 PRK11608 pspF phage shock prot 98.6 4.8E-07 1.2E-11 70.0 8.5 147 148-324 6-183 (325)
162 PRK10923 glnG nitrogen regulat 98.5 1.1E-06 2.7E-11 67.5 9.8 210 146-385 136-385 (469)
163 TIGR02442 Cob-chelat-sub cobal 98.5 5.7E-07 1.4E-11 69.5 8.2 150 147-331 3-219 (688)
164 PRK05022 anaerobic nitric oxid 98.5 4.5E-07 1.1E-11 70.2 7.6 194 148-371 186-422 (510)
165 PRK06835 DNA replication prote 98.5 7.4E-07 1.9E-11 68.6 8.5 124 155-297 160-290 (330)
166 TIGR00390 hslU heat shock prot 98.5 1.1E-07 2.8E-12 74.6 4.2 89 146-237 9-105 (463)
167 COG1221 PspF Transcriptional r 98.5 8.5E-07 2.2E-11 68.2 8.4 199 141-368 71-309 (403)
168 COG3829 RocR Transcriptional r 98.5 4.2E-07 1.1E-11 70.4 6.1 210 143-385 240-495 (560)
169 KOG2680 consensus 98.4 3.8E-06 9.7E-11 63.4 10.7 185 148-352 40-253 (454)
170 PRK06871 DNA polymerase III su 98.4 2.3E-06 5.8E-11 65.1 9.5 134 178-330 20-177 (324)
171 PTZ00112 origin recognition co 98.4 2.4E-06 6E-11 65.0 9.2 227 139-389 253-514 (650)
172 COG1484 DnaC DNA replication p 98.4 4.3E-07 1.1E-11 70.3 5.4 72 180-252 104-179 (254)
173 PRK09183 transposase/IS protei 98.4 9.3E-07 2.4E-11 67.9 6.7 101 181-296 101-205 (258)
174 PRK08769 DNA polymerase III su 98.4 4.1E-06 1E-10 63.3 9.5 133 177-328 22-182 (319)
175 PRK05707 DNA polymerase III su 98.4 2.7E-06 6.9E-11 64.5 8.4 133 178-329 19-176 (328)
176 pfam03969 AFG1_ATPase AFG1-lik 98.4 2.5E-06 6.3E-11 64.8 8.1 137 179-344 59-205 (361)
177 pfam01695 IstB IstB-like ATP b 98.3 1.1E-06 2.8E-11 67.4 6.0 101 180-296 46-150 (178)
178 TIGR00368 TIGR00368 Mg chelata 98.3 1.6E-07 4E-12 73.5 1.6 48 143-204 189-236 (505)
179 PRK07132 DNA polymerase III su 98.3 4.7E-06 1.2E-10 62.8 9.1 142 162-327 5-160 (303)
180 TIGR02880 cbbX_cfxQ CbbX prote 98.3 8.5E-06 2.2E-10 60.9 10.2 210 147-367 21-252 (284)
181 PRK06526 transposase; Provisio 98.3 1.5E-06 3.9E-11 66.3 6.3 100 181-296 98-201 (254)
182 PRK06921 hypothetical protein; 98.3 6.6E-06 1.7E-10 61.7 9.1 102 181-295 116-223 (265)
183 PRK08181 transposase; Validate 98.3 1.8E-06 4.5E-11 65.9 6.1 100 181-296 106-209 (269)
184 PRK05917 DNA polymerase III su 98.3 3.7E-05 9.4E-10 56.3 12.5 116 178-309 16-149 (290)
185 KOG0991 consensus 98.3 2.6E-05 6.7E-10 57.4 11.5 235 145-435 24-280 (333)
186 smart00350 MCM minichromosome 98.2 1.3E-05 3.4E-10 59.6 9.4 165 149-334 204-407 (509)
187 KOG2383 consensus 98.2 9.4E-06 2.4E-10 60.6 8.1 175 178-392 111-318 (467)
188 KOG0990 consensus 98.2 4.1E-05 1E-09 56.0 11.4 161 139-332 32-204 (360)
189 PRK06090 DNA polymerase III su 98.2 1.5E-05 3.9E-10 59.1 9.0 134 177-329 21-178 (319)
190 PRK12377 putative replication 98.2 1.6E-06 4.2E-11 66.1 3.9 132 143-296 69-206 (248)
191 pfam03215 Rad17 Rad17 cell cyc 98.2 6.5E-05 1.6E-09 54.6 12.1 204 145-372 16-263 (490)
192 pfam01637 Arch_ATPase Archaeal 98.2 8.4E-05 2.1E-09 53.7 12.5 176 157-353 5-217 (223)
193 pfam00158 Sigma54_activat Sigm 98.2 3.5E-06 8.9E-11 63.7 5.1 120 178-315 19-160 (168)
194 PRK08699 DNA polymerase III su 98.2 8.9E-06 2.3E-10 60.8 7.2 132 178-328 18-182 (325)
195 PRK06964 DNA polymerase III su 98.1 1.9E-05 4.8E-10 58.5 8.4 136 174-328 14-201 (342)
196 PRK07993 DNA polymerase III su 98.1 2.4E-05 6.2E-10 57.7 8.7 134 178-330 21-179 (334)
197 KOG2227 consensus 98.1 0.00023 5.7E-09 50.6 13.1 180 158-355 157-364 (529)
198 PRK13531 regulatory ATPase Rav 98.0 8.4E-07 2.1E-11 68.2 -0.1 128 176-320 34-182 (498)
199 COG3604 FhlA Transcriptional r 98.0 1.7E-05 4.3E-10 58.8 6.3 197 141-368 216-456 (550)
200 COG2204 AtoC Response regulato 98.0 4.5E-05 1.1E-09 55.7 7.9 150 145-324 138-318 (464)
201 PHA02244 ATPase-like protein 97.9 4.4E-05 1.1E-09 55.8 7.2 124 178-322 118-263 (383)
202 COG3267 ExeA Type II secretory 97.9 0.00045 1.2E-08 48.4 12.0 187 181-382 50-267 (269)
203 PRK13406 bchD magnesium chelat 97.9 0.00031 8E-09 49.6 10.9 182 182-390 26-252 (584)
204 pfam06480 FtsH_ext FtsH Extrac 97.9 0.00034 8.6E-09 49.4 11.0 70 17-86 20-102 (104)
205 KOG1968 consensus 97.9 1.1E-05 2.8E-10 60.1 3.3 199 145-367 317-535 (871)
206 TIGR01818 ntrC nitrogen regula 97.8 4.5E-05 1.2E-09 55.7 5.7 205 148-385 135-382 (471)
207 COG1485 Predicted ATPase [Gene 97.7 0.00012 3.1E-09 52.6 6.6 198 133-357 10-224 (367)
208 KOG1051 consensus 97.7 0.00011 2.9E-09 52.8 6.1 127 148-296 562-711 (898)
209 cd01393 recA_like RecA is a b 97.7 9.9E-05 2.5E-09 53.2 5.7 34 175-208 11-46 (226)
210 pfam08298 AAA_PrkA PrkA AAA do 97.7 6.6E-05 1.7E-09 54.5 4.5 84 145-235 55-141 (358)
211 KOG0732 consensus 97.7 3.7E-06 9.5E-11 63.5 -1.9 189 179-371 529-740 (1080)
212 pfam06745 KaiC KaiC. This fami 97.6 0.00056 1.4E-08 47.8 9.0 40 175-214 11-56 (231)
213 KOG1970 consensus 97.6 0.00058 1.5E-08 47.7 9.0 204 146-368 80-320 (634)
214 pfam00931 NB-ARC NB-ARC domain 97.6 0.0011 2.8E-08 45.7 10.4 246 158-443 3-281 (285)
215 COG5245 DYN1 Dynein, heavy cha 97.6 0.00013 3.3E-09 52.4 5.2 203 146-362 1453-1710(3164)
216 PRK08533 flagellar accessory p 97.5 0.00023 6E-09 50.5 6.0 132 167-309 8-175 (230)
217 cd00464 SK Shikimate kinase (S 97.5 0.0001 2.6E-09 53.1 4.2 46 184-234 2-47 (154)
218 COG2074 2-phosphoglycerate kin 97.5 0.01 2.6E-07 38.7 15.0 181 177-389 85-282 (299)
219 pfam00910 RNA_helicase RNA hel 97.5 7.8E-05 2E-09 54.0 3.5 86 184-295 1-105 (105)
220 TIGR02640 gas_vesic_GvpN gas v 97.5 4.1E-05 1.1E-09 56.0 1.9 144 168-333 12-200 (265)
221 PRK05057 aroK shikimate kinase 97.5 0.00013 3.3E-09 52.4 4.1 43 181-225 4-46 (172)
222 PRK09302 circadian clock prote 97.5 0.0011 2.8E-08 45.6 8.9 73 181-253 24-136 (501)
223 PRK09361 radB DNA repair and r 97.5 0.00093 2.4E-08 46.2 8.2 40 175-214 15-59 (224)
224 PRK00131 aroK shikimate kinase 97.5 0.00014 3.5E-09 52.2 3.9 51 180-235 3-53 (175)
225 KOG0478 consensus 97.5 0.0017 4.3E-08 44.3 9.5 119 182-321 463-616 (804)
226 COG1373 Predicted ATPase (AAA+ 97.5 0.013 3.3E-07 37.9 14.5 125 176-324 33-160 (398)
227 TIGR00678 holB DNA polymerase 97.4 0.00041 1E-08 48.7 6.1 154 177-354 10-214 (216)
228 PRK13947 shikimate kinase; Pro 97.4 0.00017 4.3E-09 51.5 3.9 40 182-223 2-41 (171)
229 PRK13948 shikimate kinase; Pro 97.4 0.00022 5.6E-09 50.7 4.5 53 179-236 8-60 (182)
230 pfam02562 PhoH PhoH-like prote 97.4 0.00031 8E-09 49.6 5.2 21 184-204 22-42 (205)
231 TIGR02173 cyt_kin_arch cytidyl 97.4 8.9E-05 2.3E-09 53.6 2.3 29 184-212 3-31 (173)
232 PRK13946 shikimate kinase; Pro 97.4 0.00021 5.3E-09 50.9 4.1 49 182-235 21-69 (195)
233 PRK13949 shikimate kinase; Pro 97.4 0.00023 5.9E-09 50.5 4.3 49 182-235 2-50 (169)
234 COG1241 MCM2 Predicted ATPase 97.4 0.00054 1.4E-08 47.9 6.2 250 183-512 321-608 (682)
235 COG3284 AcoR Transcriptional a 97.4 0.0012 3.1E-08 45.3 7.8 183 183-386 338-555 (606)
236 cd01394 radB RadB. The archaea 97.3 0.0013 3.4E-08 45.1 7.8 40 175-214 11-55 (218)
237 cd01124 KaiC KaiC is a circadi 97.3 0.00045 1.2E-08 48.4 5.3 30 184-213 2-34 (187)
238 pfam05729 NACHT NACHT domain. 97.3 0.0036 9.3E-08 41.9 9.8 139 182-332 1-163 (165)
239 KOG0480 consensus 97.3 0.0011 2.7E-08 45.8 6.7 164 144-329 341-540 (764)
240 pfam00448 SRP54 SRP54-type pro 97.3 0.001 2.6E-08 46.0 6.5 114 181-306 1-137 (196)
241 TIGR00602 rad24 checkpoint pro 97.2 0.00028 7.1E-09 50.0 3.5 58 146-210 87-147 (670)
242 cd01428 ADK Adenylate kinase ( 97.2 0.00093 2.4E-08 46.2 6.1 118 184-329 2-125 (194)
243 PRK03731 aroL shikimate kinase 97.2 0.00035 8.9E-09 49.2 3.8 44 180-225 1-44 (172)
244 COG2274 SunT ABC-type bacterio 97.2 0.0079 2E-07 39.5 10.3 43 452-497 539-587 (709)
245 KOG0477 consensus 97.2 0.0064 1.6E-07 40.1 9.6 138 183-335 484-654 (854)
246 cd01120 RecA-like_NTPases RecA 97.1 0.0018 4.7E-08 44.0 6.7 72 184-255 2-100 (165)
247 PRK00625 shikimate kinase; Pro 97.1 0.00053 1.4E-08 47.9 3.8 31 183-213 2-32 (173)
248 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0013 3.4E-08 45.1 5.8 32 176-207 12-45 (235)
249 TIGR02974 phageshock_pspF psp 97.1 0.0009 2.3E-08 46.3 4.9 161 171-360 13-210 (349)
250 COG0563 Adk Adenylate kinase a 97.1 0.0017 4.4E-08 44.2 6.3 30 183-212 2-31 (178)
251 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00068 1.7E-08 47.2 4.2 62 146-214 48-118 (361)
252 PRK12724 flagellar biosynthesi 97.1 0.003 7.5E-08 42.6 7.4 153 169-336 211-389 (432)
253 cd03246 ABCC_Protease_Secretio 97.1 0.0029 7.3E-08 42.7 7.3 123 173-316 18-169 (173)
254 TIGR03375 type_I_sec_LssB type 97.1 0.0053 1.3E-07 40.7 8.5 50 453-505 532-589 (694)
255 PRK02496 adk adenylate kinase; 97.1 0.0027 6.8E-08 42.9 7.0 118 182-328 2-127 (185)
256 COG0703 AroK Shikimate kinase 97.1 0.00069 1.8E-08 47.1 4.0 51 182-237 3-53 (172)
257 cd03115 SRP The signal recogni 97.1 0.0013 3.3E-08 45.1 5.4 110 184-305 3-135 (173)
258 PRK06067 flagellar accessory p 97.1 0.0016 4.1E-08 44.5 5.8 51 147-203 2-54 (241)
259 TIGR01817 nifA Nif-specific re 97.0 0.00034 8.8E-09 49.3 2.3 212 141-383 205-457 (574)
260 cd01121 Sms Sms (bacterial rad 97.0 0.0058 1.5E-07 40.4 8.5 117 176-295 75-211 (372)
261 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0045 1.1E-07 41.2 7.9 119 173-316 17-161 (166)
262 PRK10536 hypothetical protein; 97.0 0.0012 3E-08 45.5 4.8 23 183-205 76-98 (262)
263 pfam08423 Rad51 Rad51. Rad51 i 97.0 0.0025 6.4E-08 43.1 6.3 35 174-208 34-70 (261)
264 cd03278 ABC_SMC_barmotin Barmo 97.0 0.0047 1.2E-07 41.1 7.5 18 293-317 173-190 (197)
265 pfam00437 GSPII_E Type II/IV s 96.9 0.0018 4.7E-08 44.0 5.1 188 28-249 12-218 (283)
266 PRK08118 topology modulation p 96.9 0.00077 2E-08 46.8 3.1 101 182-332 2-102 (167)
267 PTZ00111 DNA replication licen 96.9 0.0061 1.6E-07 40.3 7.8 287 183-516 495-825 (916)
268 PRK04328 hypothetical protein; 96.9 0.00078 2E-08 46.7 3.2 29 176-204 17-47 (250)
269 PRK12723 flagellar biosynthesi 96.9 0.011 2.8E-07 38.5 9.0 169 180-361 173-379 (388)
270 PRK11823 DNA repair protein Ra 96.9 0.0076 1.9E-07 39.6 8.2 118 175-295 82-218 (454)
271 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0015 3.8E-08 44.7 4.4 116 173-302 11-147 (162)
272 KOG2170 consensus 96.9 0.007 1.8E-07 39.8 7.7 94 150-252 84-190 (344)
273 TIGR02031 BchD-ChlD magnesium 96.9 0.021 5.4E-07 36.3 10.1 189 182-390 18-311 (705)
274 PRK11248 tauB taurine transpor 96.8 0.0047 1.2E-07 41.1 6.7 31 176-206 20-52 (255)
275 PRK04301 radA DNA repair and r 96.8 0.0033 8.4E-08 42.2 5.8 35 174-208 94-130 (318)
276 PRK08154 anaerobic benzoate ca 96.8 0.0032 8.1E-08 42.3 5.7 44 180-225 132-175 (304)
277 cd03228 ABCC_MRP_Like The MRP 96.8 0.0074 1.9E-07 39.7 7.6 122 172-316 17-168 (171)
278 PRK05703 flhF flagellar biosyn 96.8 0.0026 6.7E-08 42.9 5.0 113 181-308 210-344 (412)
279 pfam00406 ADK Adenylate kinase 96.8 0.0025 6.4E-08 43.0 5.0 112 186-329 1-122 (186)
280 PRK13808 adenylate kinase; Pro 96.8 0.0039 1E-07 41.6 5.9 30 183-212 2-31 (297)
281 PRK13951 bifunctional shikimat 96.8 0.0018 4.5E-08 44.2 4.1 38 184-223 3-40 (488)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0096 2.4E-07 38.8 7.8 31 176-206 23-55 (218)
283 cd03238 ABC_UvrA The excision 96.8 0.0041 1E-07 41.6 5.8 33 174-206 12-46 (176)
284 cd02021 GntK Gluconate kinase 96.7 0.00085 2.2E-08 46.4 2.3 30 184-213 2-31 (150)
285 PRK03839 putative kinase; Prov 96.7 0.00066 1.7E-08 47.3 1.5 30 184-213 3-32 (180)
286 cd03231 ABC_CcmA_heme_exporter 96.7 0.021 5.3E-07 36.4 9.1 33 174-206 17-51 (201)
287 KOG3347 consensus 96.7 0.0008 2E-08 46.7 1.8 35 182-218 8-42 (176)
288 PRK13539 cytochrome c biogenes 96.7 0.025 6.4E-07 35.8 9.4 31 176-206 21-53 (206)
289 PRK09825 idnK D-gluconate kina 96.7 0.0011 2.7E-08 45.8 2.2 36 181-218 3-38 (176)
290 cd00983 recA RecA is a bacter 96.6 0.0047 1.2E-07 41.1 5.5 27 178-204 50-78 (325)
291 TIGR03608 L_ocin_972_ABC putat 96.6 0.015 3.9E-07 37.4 8.1 30 176-205 17-48 (206)
292 COG1067 LonB Predicted ATP-dep 96.6 0.015 3.8E-07 37.5 8.0 223 142-388 98-399 (647)
293 PRK09354 recA recombinase A; P 96.6 0.0045 1.1E-07 41.3 5.3 29 176-204 52-83 (350)
294 pfam03796 DnaB_C DnaB-like hel 96.6 0.011 2.9E-07 38.3 7.3 37 177-213 15-55 (186)
295 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0077 2E-07 39.5 6.4 121 175-315 17-153 (157)
296 pfam10236 DAP3 Mitochondrial r 96.6 0.07 1.8E-06 32.6 12.9 42 157-203 4-46 (274)
297 PRK10247 putative ABC transpor 96.6 0.015 3.8E-07 37.5 7.8 30 176-205 26-57 (225)
298 cd03232 ABC_PDR_domain2 The pl 96.6 0.026 6.7E-07 35.7 8.9 31 174-204 24-56 (192)
299 PRK07276 DNA polymerase III su 96.5 0.067 1.7E-06 32.7 10.8 122 163-306 10-155 (290)
300 COG1102 Cmk Cytidylate kinase 96.5 0.0017 4.4E-08 44.3 2.7 36 184-220 3-38 (179)
301 COG0467 RAD55 RecA-superfamily 96.5 0.0015 3.7E-08 44.7 2.3 39 177-215 17-60 (260)
302 PRK08099 nicotinamide-nucleoti 96.5 0.0024 6.2E-08 43.2 3.3 84 168-252 213-313 (411)
303 pfam06309 Torsin Torsin. This 96.5 0.0029 7.3E-08 42.7 3.6 53 146-204 22-76 (127)
304 PRK13764 ATPase; Provisional 96.5 0.0014 3.6E-08 44.8 2.1 149 181-359 259-417 (605)
305 cd03369 ABCC_NFT1 Domain 2 of 96.5 0.02 5.1E-07 36.6 7.8 35 172-206 23-59 (207)
306 COG4650 RtcR Sigma54-dependent 96.5 0.007 1.8E-07 39.8 5.4 103 145-253 162-295 (531)
307 cd04155 Arl3 Arl3 subfamily. 96.4 0.0044 1.1E-07 41.3 4.3 103 183-299 16-128 (173)
308 PRK06995 flhF flagellar biosyn 96.4 0.0062 1.6E-07 40.2 5.0 133 184-331 179-335 (404)
309 PRK07261 topology modulation p 96.4 0.002 5.1E-08 43.8 2.3 99 184-332 3-102 (171)
310 TIGR02329 propionate_PrpR prop 96.4 0.0034 8.5E-08 42.2 3.5 175 123-332 284-499 (658)
311 TIGR01351 adk adenylate kinase 96.4 0.0034 8.8E-08 42.1 3.5 185 184-423 2-201 (232)
312 pfam00625 Guanylate_kin Guanyl 96.4 0.02 5.1E-07 36.6 7.3 25 182-206 2-26 (182)
313 PRK06731 flhF flagellar biosyn 96.4 0.032 8.3E-07 35.0 8.4 25 179-203 73-97 (270)
314 TIGR02237 recomb_radB DNA repa 96.4 0.0024 6.1E-08 43.2 2.6 52 176-235 5-63 (223)
315 pfam01580 FtsK_SpoIIIE FtsK/Sp 96.4 0.014 3.5E-07 37.7 6.4 52 240-298 151-202 (202)
316 cd03251 ABCC_MsbA MsbA is an e 96.3 0.018 4.5E-07 36.9 6.9 33 173-205 18-52 (234)
317 pfam09848 DUF2075 Uncharacteri 96.3 0.0058 1.5E-07 40.4 4.4 91 184-280 4-113 (348)
318 pfam01583 APS_kinase Adenylyls 96.3 0.018 4.7E-07 36.8 6.8 101 184-318 5-109 (157)
319 PRK12339 2-phosphoglycerate ki 96.3 0.11 2.7E-06 31.3 13.8 178 181-389 3-192 (197)
320 cd01130 VirB11-like_ATPase Typ 96.3 0.0041 1E-07 41.6 3.2 74 177-250 21-110 (186)
321 PRK09302 circadian clock prote 96.2 0.005 1.3E-07 40.9 3.6 30 175-204 258-289 (501)
322 cd03288 ABCC_SUR2 The SUR doma 96.2 0.011 2.9E-07 38.3 5.4 35 172-206 36-72 (257)
323 PTZ00088 adenylate kinase 1; P 96.2 0.0025 6.4E-08 43.1 2.0 30 183-212 2-31 (225)
324 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.019 4.9E-07 36.7 6.5 32 175-206 22-55 (220)
325 PRK11545 gntK gluconate kinase 96.2 0.0031 7.8E-08 42.4 2.4 38 180-219 7-44 (177)
326 cd03247 ABCC_cytochrome_bd The 96.2 0.027 6.8E-07 35.7 7.1 34 173-206 18-53 (178)
327 cd01122 GP4d_helicase GP4d_hel 96.2 0.0089 2.3E-07 39.1 4.7 37 177-213 26-66 (271)
328 PRK11889 flhF flagellar biosyn 96.2 0.019 4.9E-07 36.6 6.4 145 180-336 240-407 (436)
329 KOG0482 consensus 96.2 0.098 2.5E-06 31.5 10.0 171 149-334 343-546 (721)
330 pfam05707 Zot Zonular occluden 96.2 0.0091 2.3E-07 39.0 4.7 129 184-325 3-143 (183)
331 PRK00279 adk adenylate kinase; 96.2 0.0028 7.2E-08 42.7 2.0 116 184-328 3-126 (215)
332 cd00984 DnaB_C DnaB helicase C 96.2 0.04 1E-06 34.4 7.9 38 177-214 9-50 (242)
333 PRK13540 cytochrome c biogenes 96.1 0.03 7.6E-07 35.3 7.2 34 173-206 17-52 (200)
334 PRK00300 gmk guanylate kinase; 96.1 0.05 1.3E-06 33.7 8.3 25 182-206 8-32 (208)
335 cd03213 ABCG_EPDR ABCG transpo 96.1 0.05 1.3E-06 33.6 8.3 32 174-205 26-59 (194)
336 cd03292 ABC_FtsE_transporter F 96.1 0.035 8.9E-07 34.8 7.5 29 176-204 20-50 (214)
337 cd03240 ABC_Rad50 The catalyti 96.1 0.047 1.2E-06 33.9 8.0 20 184-203 25-44 (204)
338 PRK13900 type IV secretion sys 96.1 0.011 2.7E-07 38.6 4.7 79 171-249 150-244 (332)
339 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.1 0.032 8.3E-07 35.0 7.1 33 173-205 19-53 (238)
340 cd03253 ABCC_ATM1_transporter 96.1 0.019 4.9E-07 36.7 5.9 33 173-205 17-51 (236)
341 PRK04182 cytidylate kinase; Pr 96.1 0.034 8.7E-07 34.9 7.2 29 184-212 3-31 (178)
342 PRK10790 putative multidrug tr 96.1 0.037 9.3E-07 34.6 7.3 12 490-501 482-493 (593)
343 pfam01057 Parvo_NS1 Parvovirus 96.0 0.0034 8.6E-08 42.1 1.9 25 182-206 114-138 (271)
344 cd03229 ABC_Class3 This class 96.0 0.023 5.9E-07 36.1 6.1 31 175-205 18-50 (178)
345 COG0324 MiaA tRNA delta(2)-iso 96.0 0.088 2.2E-06 31.9 9.0 98 180-294 2-102 (308)
346 COG1936 Predicted nucleotide k 96.0 0.0044 1.1E-07 41.3 2.4 32 184-218 3-34 (180)
347 cd03254 ABCC_Glucan_exporter_l 96.0 0.02 5.1E-07 36.6 5.7 32 174-205 20-53 (229)
348 pfam06414 Zeta_toxin Zeta toxi 96.0 0.0065 1.7E-07 40.1 3.2 128 179-332 10-141 (191)
349 pfam00154 RecA recA bacterial 96.0 0.013 3.4E-07 37.9 4.7 27 176-202 44-73 (322)
350 TIGR02858 spore_III_AA stage I 96.0 0.022 5.6E-07 36.2 5.8 117 161-306 110-250 (282)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.025 6.4E-07 35.8 6.1 118 174-315 17-140 (144)
352 cd03250 ABCC_MRP_domain1 Domai 95.9 0.028 7.2E-07 35.5 6.3 31 175-205 23-55 (204)
353 PRK10418 nikD nickel transport 95.9 0.03 7.6E-07 35.3 6.4 40 176-215 22-63 (254)
354 cd03233 ABC_PDR_domain1 The pl 95.9 0.061 1.6E-06 33.0 7.9 38 177-215 27-66 (202)
355 PRK12337 2-phosphoglycerate ki 95.9 0.16 4E-06 30.0 14.2 228 156-406 226-481 (492)
356 COG3283 TyrR Transcriptional r 95.9 0.0082 2.1E-07 39.3 3.4 139 145-309 195-354 (511)
357 PRK10789 putative multidrug tr 95.9 0.045 1.2E-06 34.0 7.2 12 490-501 457-468 (569)
358 TIGR03167 tRNA_sel_U_synt tRNA 95.9 0.16 4.1E-06 30.0 12.0 107 182-330 128-244 (311)
359 PRK11160 cysteine/glutathione 95.8 0.034 8.7E-07 34.9 6.4 14 396-409 474-487 (575)
360 COG0468 RecA RecA/RadA recombi 95.8 0.057 1.5E-06 33.2 7.5 35 174-208 51-87 (279)
361 pfam05272 VirE Virulence-assoc 95.8 0.023 5.9E-07 36.1 5.4 143 143-316 13-168 (198)
362 cd04154 Arl2 Arl2 subfamily. 95.8 0.012 3.2E-07 38.0 4.0 105 183-300 16-129 (173)
363 PRK13700 conjugal transfer pro 95.8 0.05 1.3E-06 33.7 7.0 74 173-249 172-254 (732)
364 cd02027 APSK Adenosine 5'-phos 95.8 0.036 9.1E-07 34.7 6.3 21 184-204 2-22 (149)
365 COG1855 ATPase (PilT family) [ 95.8 0.0052 1.3E-07 40.8 2.0 224 143-423 242-476 (604)
366 TIGR01842 type_I_sec_PrtD type 95.7 0.023 6E-07 36.0 5.2 143 145-301 283-531 (556)
367 COG3842 PotA ABC-type spermidi 95.7 0.0059 1.5E-07 40.4 2.1 29 176-204 24-54 (352)
368 TIGR01313 therm_gnt_kin carboh 95.7 0.0046 1.2E-07 41.1 1.5 84 184-305 1-89 (175)
369 COG5271 MDN1 AAA ATPase contai 95.7 0.037 9.4E-07 34.6 6.1 133 179-329 1541-1701(4600)
370 cd03222 ABC_RNaseL_inhibitor T 95.7 0.012 3.2E-07 38.0 3.7 68 179-249 21-98 (177)
371 COG1131 CcmA ABC-type multidru 95.6 0.11 2.8E-06 31.1 8.3 32 175-206 23-56 (293)
372 cd03252 ABCC_Hemolysin The ABC 95.6 0.066 1.7E-06 32.8 7.2 33 172-204 17-51 (237)
373 pfam09439 SRPRB Signal recogni 95.6 0.029 7.5E-07 35.3 5.4 64 182-246 4-82 (181)
374 KOG2543 consensus 95.6 0.15 3.8E-06 30.2 8.9 137 179-329 28-191 (438)
375 cd03245 ABCC_bacteriocin_expor 95.6 0.043 1.1E-06 34.1 6.1 33 173-205 20-54 (220)
376 COG3854 SpoIIIAA ncharacterize 95.6 0.0083 2.1E-07 39.3 2.4 69 182-250 138-228 (308)
377 pfam01745 IPT Isopentenyl tran 95.5 0.024 6.1E-07 36.0 4.6 121 184-322 4-130 (232)
378 PRK03846 adenylylsulfate kinas 95.5 0.074 1.9E-06 32.4 7.0 107 179-319 22-132 (198)
379 PRK13657 cyclic beta-1,2-gluca 95.5 0.073 1.9E-06 32.5 7.0 13 559-571 524-536 (585)
380 TIGR00362 DnaA chromosomal rep 95.5 0.22 5.7E-06 29.0 13.2 141 177-332 176-327 (493)
381 PRK11174 cysteine/glutathione 95.5 0.066 1.7E-06 32.8 6.7 14 396-409 483-496 (588)
382 PRK05818 DNA polymerase III su 95.4 0.11 2.9E-06 31.1 7.9 179 179-383 6-210 (262)
383 cd03230 ABC_DR_subfamily_A Thi 95.4 0.12 3.1E-06 30.8 8.0 108 176-300 19-159 (173)
384 cd03291 ABCC_CFTR1 The CFTR su 95.4 0.057 1.5E-06 33.2 6.3 33 174-206 54-88 (282)
385 cd03214 ABC_Iron-Siderophores_ 95.3 0.069 1.8E-06 32.7 6.5 33 174-206 16-50 (180)
386 cd03248 ABCC_TAP TAP, the Tran 95.3 0.049 1.3E-06 33.7 5.7 28 177-204 34-63 (226)
387 TIGR01743 purR_Bsub pur operon 95.3 0.042 1.1E-06 34.2 5.3 132 143-297 65-238 (269)
388 PRK09401 reverse gyrase; Revie 95.3 0.26 6.5E-06 28.5 9.4 10 509-518 916-925 (1176)
389 COG4178 ABC-type uncharacteriz 95.3 0.01 2.6E-07 38.6 2.0 15 67-81 68-82 (604)
390 KOG3928 consensus 95.3 0.016 4E-07 37.3 3.0 36 178-213 176-212 (461)
391 cd03283 ABC_MutS-like MutS-lik 95.2 0.036 9.3E-07 34.7 4.8 107 180-300 24-152 (199)
392 cd00071 GMPK Guanosine monopho 95.2 0.03 7.7E-07 35.2 4.3 26 184-209 2-27 (137)
393 PRK09544 znuC high-affinity zi 95.2 0.092 2.4E-06 31.7 6.7 32 175-206 22-55 (251)
394 smart00072 GuKc Guanylate kina 95.2 0.12 3E-06 30.9 7.3 29 181-209 2-30 (184)
395 PTZ00035 Rad51; Provisional 95.2 0.052 1.3E-06 33.5 5.4 34 176-209 123-158 (350)
396 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.099 2.5E-06 31.5 6.8 117 177-307 25-165 (213)
397 PRK13851 type IV secretion sys 95.2 0.017 4.4E-07 37.0 2.9 79 171-249 152-245 (343)
398 COG1127 Ttg2A ABC-type transpo 95.1 0.051 1.3E-06 33.6 5.3 32 174-205 25-58 (263)
399 PRK06217 hypothetical protein; 95.1 0.015 3.8E-07 37.5 2.5 96 182-322 2-97 (185)
400 pfam00488 MutS_V MutS domain V 95.1 0.026 6.6E-07 35.7 3.7 113 179-306 40-175 (234)
401 cd00227 CPT Chloramphenicol (C 95.1 0.021 5.4E-07 36.4 3.2 40 182-221 3-42 (175)
402 KOG2228 consensus 95.1 0.01 2.6E-07 38.7 1.5 139 181-331 49-219 (408)
403 KOG0057 consensus 95.1 0.13 3.4E-06 30.6 7.3 21 452-472 520-540 (591)
404 TIGR02982 heterocyst_DevA ABC 95.1 0.009 2.3E-07 39.1 1.2 28 176-203 24-53 (220)
405 cd02020 CMPK Cytidine monophos 95.0 0.015 3.8E-07 37.5 2.3 29 184-212 2-30 (147)
406 COG1066 Sms Predicted ATP-depe 95.0 0.19 4.7E-06 29.5 7.9 115 172-291 82-217 (456)
407 COG2874 FlaH Predicted ATPases 95.0 0.11 2.9E-06 31.1 6.8 38 167-204 12-51 (235)
408 COG3839 MalK ABC-type sugar tr 95.0 0.014 3.5E-07 37.7 2.0 30 176-205 22-53 (338)
409 KOG3595 consensus 95.0 0.024 6.1E-07 36.0 3.2 34 180-213 464-497 (1395)
410 cd03244 ABCC_MRP_domain2 Domai 94.9 0.11 2.7E-06 31.3 6.4 34 173-206 20-55 (221)
411 TIGR03575 selen_PSTK_euk L-ser 94.9 0.026 6.7E-07 35.7 3.2 35 184-218 2-40 (340)
412 KOG0481 consensus 94.9 0.087 2.2E-06 31.9 5.8 168 183-363 366-580 (729)
413 PRK12727 flagellar biosynthesi 94.8 0.046 1.2E-06 33.9 4.4 134 184-332 351-507 (557)
414 PRK11432 fbpC ferric transport 94.8 0.018 4.6E-07 36.9 2.2 31 176-206 25-57 (351)
415 cd03289 ABCC_CFTR2 The CFTR su 94.8 0.088 2.2E-06 31.9 5.7 33 173-205 20-54 (275)
416 PRK05541 adenylylsulfate kinas 94.8 0.061 1.6E-06 33.0 4.9 23 182-204 8-30 (176)
417 cd03216 ABC_Carb_Monos_I This 94.8 0.13 3.4E-06 30.6 6.5 108 177-298 20-144 (163)
418 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.3 7.7E-06 28.0 8.3 27 178-204 21-49 (200)
419 pfam08433 KTI12 Chromatin asso 94.7 0.11 2.8E-06 31.2 6.0 81 184-298 2-82 (266)
420 TIGR03265 PhnT2 putative 2-ami 94.7 0.018 4.5E-07 36.9 1.9 31 176-206 23-55 (353)
421 PRK05506 bifunctional sulfate 94.7 0.2 5E-06 29.4 7.2 63 25-89 55-121 (613)
422 pfam07931 CPT Chloramphenicol 94.7 0.031 7.9E-07 35.1 3.1 39 183-221 3-41 (174)
423 pfam01202 SKI Shikimate kinase 94.7 0.04 1E-06 34.3 3.7 42 190-236 1-42 (158)
424 cd04157 Arl6 Arl6 subfamily. 94.7 0.039 1E-06 34.4 3.6 105 183-300 1-118 (162)
425 smart00534 MUTSac ATPase domai 94.6 0.13 3.4E-06 30.6 6.3 101 184-299 2-125 (185)
426 PRK06696 uridine kinase; Valid 94.6 0.041 1E-06 34.3 3.7 54 159-218 10-66 (227)
427 cd03286 ABC_MSH6_euk MutS6 hom 94.6 0.047 1.2E-06 33.8 4.0 114 177-306 26-163 (218)
428 cd04161 Arl2l1_Arl13_like Arl2 94.6 0.047 1.2E-06 33.9 3.9 101 184-298 2-112 (167)
429 cd04158 ARD1 ARD1 subfamily. 94.6 0.043 1.1E-06 34.1 3.7 102 184-298 2-112 (169)
430 COG0630 VirB11 Type IV secreto 94.5 0.029 7.5E-07 35.3 2.8 199 26-250 13-227 (312)
431 cd01129 PulE-GspE PulE/GspE Th 94.5 0.056 1.4E-06 33.3 4.2 100 137-250 49-159 (264)
432 cd03287 ABC_MSH3_euk MutS3 hom 94.5 0.056 1.4E-06 33.3 4.1 115 181-310 31-168 (222)
433 cd03284 ABC_MutS1 MutS1 homolo 94.5 0.1 2.6E-06 31.5 5.4 110 182-307 31-164 (216)
434 COG0194 Gmk Guanylate kinase [ 94.5 0.11 2.7E-06 31.3 5.5 32 183-215 6-37 (191)
435 pfam02367 UPF0079 Uncharacteri 94.5 0.029 7.3E-07 35.4 2.5 34 175-208 7-42 (123)
436 cd03294 ABC_Pro_Gly_Bertaine T 94.5 0.025 6.3E-07 35.9 2.2 30 176-205 43-74 (269)
437 pfam02456 Adeno_IVa2 Adenoviru 94.4 0.058 1.5E-06 33.2 4.0 82 176-258 83-215 (370)
438 COG4088 Predicted nucleotide k 94.4 0.018 4.6E-07 36.8 1.4 23 184-206 4-26 (261)
439 TIGR03348 VI_IcmF type VI secr 94.3 0.19 4.8E-06 29.5 6.5 41 153-198 83-128 (1169)
440 PRK00023 cmk cytidylate kinase 94.3 0.023 5.9E-07 36.1 1.9 29 184-212 7-35 (225)
441 TIGR03258 PhnT 2-aminoethylpho 94.3 0.028 7.1E-07 35.5 2.2 30 176-205 24-55 (362)
442 TIGR03600 phage_DnaB phage rep 94.2 0.23 5.9E-06 28.8 6.8 28 177-204 190-217 (421)
443 PRK11144 modC molybdate transp 94.2 0.027 6.8E-07 35.6 1.9 29 177-205 18-48 (352)
444 pfam06068 TIP49 TIP49 C-termin 94.1 0.22 5.6E-06 29.0 6.5 87 239-348 274-376 (395)
445 COG1116 TauB ABC-type nitrate/ 94.1 0.028 7.1E-07 35.5 1.9 33 174-206 20-54 (248)
446 cd04162 Arl9_Arfrp2_like Arl9/ 94.1 0.087 2.2E-06 31.9 4.4 102 184-300 2-113 (164)
447 PRK04220 2-phosphoglycerate ki 94.1 0.49 1.3E-05 26.5 14.0 187 178-389 89-285 (306)
448 pfam00519 PPV_E1_C Papillomavi 94.1 0.044 1.1E-06 34.0 2.9 79 162-248 244-326 (432)
449 cd03280 ABC_MutS2 MutS2 homolo 94.1 0.17 4.3E-06 29.8 5.8 104 181-300 28-155 (200)
450 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.028 7.2E-07 35.4 1.9 34 173-206 15-51 (255)
451 cd01131 PilT Pilus retraction 94.1 0.094 2.4E-06 31.7 4.5 67 184-250 4-84 (198)
452 cd03301 ABC_MalK_N The N-termi 94.1 0.033 8.3E-07 35.0 2.2 32 175-206 18-51 (213)
453 COG1132 MdlB ABC-type multidru 94.1 0.25 6.4E-06 28.6 6.7 37 464-503 413-451 (567)
454 PRK13536 nodulation factor exp 94.1 0.41 1.1E-05 27.0 7.8 31 176-206 26-58 (306)
455 COG1124 DppF ABC-type dipeptid 94.0 0.028 7.2E-07 35.5 1.7 29 178-206 28-58 (252)
456 TIGR01187 potA polyamine ABC t 94.0 0.028 7.1E-07 35.5 1.7 21 186-206 1-21 (331)
457 TIGR03574 selen_PSTK L-seryl-t 94.0 0.067 1.7E-06 32.8 3.6 21 184-204 2-22 (249)
458 cd04105 SR_beta Signal recogni 93.9 0.063 1.6E-06 32.9 3.4 65 183-247 2-80 (203)
459 PRK11650 ugpC glycerol-3-phosp 93.9 0.032 8.3E-07 35.0 1.9 31 176-206 23-55 (358)
460 TIGR03415 ABC_choXWV_ATP choli 93.9 0.036 9.3E-07 34.7 2.2 28 178-205 45-74 (382)
461 PRK10419 nikE nickel transport 93.9 0.033 8.4E-07 35.0 2.0 27 178-204 33-61 (266)
462 KOG3354 consensus 93.9 0.029 7.5E-07 35.3 1.7 36 182-219 13-48 (191)
463 cd04159 Arl10_like Arl10-like 93.9 0.2 5.1E-06 29.3 5.9 63 184-246 2-74 (159)
464 KOG1803 consensus 93.9 0.016 4.1E-07 37.2 0.3 17 182-198 202-218 (649)
465 TIGR03263 guanyl_kin guanylate 93.9 0.041 1E-06 34.3 2.3 31 184-214 4-34 (180)
466 COG3172 NadR Predicted ATPase/ 93.8 0.095 2.4E-06 31.6 4.2 68 181-248 8-86 (187)
467 PRK13894 conjugal transfer ATP 93.8 0.04 1E-06 34.4 2.2 182 30-249 26-229 (320)
468 PRK10646 putative ATPase; Prov 93.8 0.046 1.2E-06 33.9 2.5 33 177-209 22-56 (153)
469 pfam03266 DUF265 Protein of un 93.7 0.023 5.8E-07 36.1 0.9 23 184-206 2-24 (168)
470 cd04160 Arfrp1 Arfrp1 subfamil 93.7 0.15 3.8E-06 30.2 5.0 64 184-247 2-82 (167)
471 cd03299 ABC_ModC_like Archeal 93.7 0.042 1.1E-06 34.2 2.2 29 177-205 19-49 (235)
472 PRK01184 hypothetical protein; 93.7 0.045 1.1E-06 34.0 2.3 32 184-218 4-35 (183)
473 cd03296 ABC_CysA_sulfate_impor 93.7 0.043 1.1E-06 34.1 2.2 31 176-206 21-53 (239)
474 cd03290 ABCC_SUR1_N The SUR do 93.7 0.033 8.4E-07 35.0 1.6 34 173-206 17-52 (218)
475 PRK13768 GTPase; Provisional 93.6 0.043 1.1E-06 34.1 2.2 25 180-204 1-25 (253)
476 cd03295 ABC_OpuCA_Osmoprotecti 93.6 0.045 1.2E-06 34.0 2.2 32 175-206 19-52 (242)
477 smart00178 SAR Sar1p-like memb 93.6 0.14 3.6E-06 30.4 4.7 105 180-298 16-130 (184)
478 COG1643 HrpA HrpA-like helicas 93.6 0.12 2.9E-06 31.0 4.2 15 454-468 571-585 (845)
479 PRK11664 ATP-dependent RNA hel 93.6 0.052 1.3E-06 33.5 2.4 13 379-391 455-467 (812)
480 cd03300 ABC_PotA_N PotA is an 93.5 0.047 1.2E-06 33.9 2.2 30 176-205 19-50 (232)
481 PRK08694 consensus 93.5 0.24 6.1E-06 28.7 5.8 37 177-213 214-256 (468)
482 COG1136 SalX ABC-type antimicr 93.5 0.61 1.6E-05 25.8 8.7 67 230-316 150-216 (226)
483 PRK11147 ABC transporter ATPas 93.5 0.04 1E-06 34.4 1.8 24 553-576 486-509 (632)
484 TIGR00390 hslU heat shock prot 93.5 0.032 8.1E-07 35.1 1.3 134 241-389 269-423 (463)
485 cd03257 ABC_NikE_OppD_transpor 93.5 0.049 1.2E-06 33.7 2.2 32 175-206 23-56 (228)
486 cd03297 ABC_ModC_molybdenum_tr 93.5 0.044 1.1E-06 34.1 1.9 22 184-205 26-47 (214)
487 PRK13537 lipooligosaccharide t 93.4 0.42 1.1E-05 27.0 6.9 29 177-205 25-55 (304)
488 TIGR02868 CydC ABC transporter 93.4 0.049 1.3E-06 33.7 2.1 55 141-205 356-411 (566)
489 cd01882 BMS1 Bms1. Bms1 is an 93.4 0.096 2.4E-06 31.6 3.6 70 177-247 35-112 (225)
490 PRK13648 cbiO cobalt transport 93.4 0.052 1.3E-06 33.5 2.2 31 174-204 26-58 (269)
491 PRK10851 sulfate/thiosulfate t 93.4 0.053 1.4E-06 33.5 2.2 31 176-206 21-53 (352)
492 TIGR02788 VirB11 P-type DNA tr 93.3 0.13 3.2E-06 30.7 4.1 193 35-249 2-243 (328)
493 pfam04851 ResIII Type III rest 93.3 0.094 2.4E-06 31.7 3.4 53 184-252 21-76 (103)
494 COG4619 ABC-type uncharacteriz 93.3 0.057 1.5E-06 33.2 2.3 23 182-204 30-52 (223)
495 pfam00006 ATP-synt_ab ATP synt 93.3 0.044 1.1E-06 34.1 1.7 22 184-205 18-39 (213)
496 cd00878 Arf_Arl Arf (ADP-ribos 93.3 0.21 5.3E-06 29.2 5.1 63 184-246 2-73 (158)
497 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.05 1.3E-06 33.6 2.0 34 173-206 10-50 (246)
498 PRK09452 potA putrescine/sperm 93.3 0.056 1.4E-06 33.3 2.2 20 184-203 46-65 (378)
499 cd04150 Arf1_5_like Arf1-Arf5- 93.2 0.16 4E-06 30.0 4.5 104 184-300 3-115 (159)
500 COG4988 CydD ABC-type transpor 93.2 0.45 1.1E-05 26.8 6.8 118 175-316 341-528 (559)
No 1
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=100.00 E-value=0 Score=1683.78 Aligned_cols=497 Identities=61% Similarity=0.968 Sum_probs=488.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999-999999999999851677-887-7-7676632100001124225698898528899999999987433
Q gi|254780545|r 94 GLLSYLGSWFP-LVLVVLVWMFLMRQIQGG-GAR-G-AMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCD 169 (647)
Q Consensus 94 ~~~~iL~~~LP-liLli~i~~fl~rr~~gG-g~~-~-~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~ 169 (647)
+|+.+|++||| +|+|+++|+||+|+|+|+ |++ + +|||||||||++.+++++|||+||||+||+|+||.||||||||
T Consensus 1 ~~~~~l~~~~P~iL~l~g~~~~f~R~~~G~lGG~~~g~f~fGKS~Ak~~~~~~~kv~F~DVAG~dEAKeEl~EiVdFLK~ 80 (505)
T TIGR01241 1 SLLGFLFSLLPPILLLIGLFFLFRRQMQGGLGGKGRGAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELVEIVDFLKN 80 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 95777999999999999999999997226788877652565337898730589813223444532333433313422269
Q ss_pred HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf 56766420123331100378742588899997424699702058578864442033245999999998737801206323
Q gi|254780545|r 170 PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI 249 (647)
Q Consensus 170 ~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDei 249 (647)
|+||++||+|||||||||||||||||||||||||||+||||++|||||||||||||||||||||++||++||||||||||
T Consensus 81 P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDLFeqAK~nAPCIIFIDEI 160 (505)
T TIGR01241 81 PSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI 160 (505)
T ss_pred CHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHHHHHHHHHCCCEEEEECH
T ss_conf 63798727889871473178784246788752025889624740761011120564000144579999718970564010
Q ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 5641445578-988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r 250 DAVGRHRGIG-LGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 250 da~~~~r~~~-~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
|||||+||.+ .+||||||||||||||+|||||++++||||||||||||+|||||||||||||||.|++||.+||++||+
T Consensus 161 DAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~~PD~~GR~~IL~ 240 (505)
T TIGR01241 161 DAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 240 (505)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 00033356436676541355433233133178589885799850488411651006878744513458887467899999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98548877732110245441203798999999999876455320242104568999750136865567666866778999
Q gi|254780545|r 329 VHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408 (647)
Q Consensus 329 ~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vA 408 (647)
+|+++++|+++|||..||++|||||||||+||||||||+|+|+|++.|++.||++|+|||++|+||||++||++||+.||
T Consensus 241 VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKsr~is~~eK~~vA 320 (505)
T TIGR01241 241 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKSRVISEKEKKIVA 320 (505)
T ss_pred HHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEE
T ss_conf 98548899702477999701568767889999999999986179865628889878776522766788532677742220
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCC-CCCCEEEEHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999998505877323432201455-56405640024-43226899999999999878988888613687565233
Q gi|254780545|r 409 YHEAGHAVVACHVPKADPLHKATIIPRGR-ALGMVMQLPEA-DRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAM 486 (647)
Q Consensus 409 yHEAGHAlva~~l~~~~~v~kVTIipRg~-alG~t~~~p~~-d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs 486 (647)
|||||||||+|+++++||||||||||||+ |||||+++|++ |++++||++|+++|.++||||||||++||+++|||||+
T Consensus 321 YHEaGHAl~G~~~~~~DpV~KvTIIPRG~~AlG~t~~lP~~~D~~l~~k~~L~~~i~~~lGGRaAEe~~fG~~~vttGA~ 400 (505)
T TIGR01241 321 YHEAGHALVGLLLKDADPVHKVTIIPRGQGALGYTQFLPEEGDKYLYTKKQLLAKIAVLLGGRAAEEIIFGEEEVTTGAS 400 (505)
T ss_pred EECHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
T ss_conf 11157899997353447523256314784415516836774441003688999999987320310022307887323621
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55899999999998624888766733404-78767434565677678788999999999999999999999999999899
Q gi|254780545|r 487 SDIEYATKLARVMVTQFGFSNLLGKVSYE-EGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKND 565 (647)
Q Consensus 487 ~DL~~AT~iA~~mV~~~GMs~~lG~i~~~-~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~ 565 (647)
|||+|||+|||+|||+||||++||||.|. +..++.|+|+++...++|||+||+.||+||++||++||++|++||++|++
T Consensus 401 nD~~~AT~iAr~MVT~~GMS~klG~v~~~~~~~~~~flg~~~~~~~~~Se~tA~~ID~EV~~i~~~~Y~~A~~iL~e~~~ 480 (505)
T TIGR01241 401 NDLKQATNIARAMVTEWGMSEKLGPVAYGQSDGGEVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRD 480 (505)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15899999999731533674200451220234677679876544412218899999999999999999999999986488
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999998885499999999972
Q gi|254780545|r 566 NFVAIAEALLEYETLSGKEIASLIR 590 (647)
Q Consensus 566 ~l~~la~~Lle~EtL~~~ei~~il~ 590 (647)
.|+.||+.||++|||+.+||++|++
T Consensus 481 ~L~~~a~~Ll~~ETi~~~~~~~l~~ 505 (505)
T TIGR01241 481 ELELLAKELLEKETITREEIKELLA 505 (505)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999888763588689999819
No 2
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=0 Score=1480.89 Aligned_cols=609 Identities=54% Similarity=0.900 Sum_probs=577.1
Q ss_pred HHHHHH-HHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 989999-9999972367777774021589999999709915999988979999957980699982688279999999779
Q gi|254780545|r 2 IALCLI-ASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKD 80 (647)
Q Consensus 2 I~ivli-~l~~lf~~~~~~~~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~~l~~~L~e~~ 80 (647)
+|++++ +++.+|..+..+..+.++|+||+|++++++|+|++|.|.++.+.++.+++. .|.++.|..++++.+.|.+++
T Consensus 7 ~~~~i~~~~~~~~~~~~~~~~~~~~i~ys~f~~~~~~~~v~~v~i~~~~i~~~~~~~~-~~~~~~p~~d~~l~~~l~~~~ 85 (644)
T PRK10733 7 LWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSN-RYTTYIPVNDPKLLDNLLTKN 85 (644)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCEEEEEEECCEEEEEECCCC-EEEEECCCCCHHHHHHHHHCC
T ss_conf 9999999999999983678888706539999999984991599995779999986897-699857888879999999749
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 82899856865218999999999999999999999985167788777676632100001124225698898528899999
Q gi|254780545|r 81 IEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDL 160 (647)
Q Consensus 81 V~v~~~~~~~~s~~~~~iL~~~LPliLli~i~~fl~rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~ 160 (647)
+++...++. ..++|..++++|+|+++|+++|+||+|+|++||++++|+|||||||++.+++++|||+||+|++++|+||
T Consensus 86 v~~~~~~~~-~~~~~~~~l~~~~p~ll~~~~~~~~~r~~~~gg~~~~~~fgkskak~~~~~~~~vtF~DVaG~~eaK~el 164 (644)
T PRK10733 86 VKVVGEPPE-EPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEV 164 (644)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 848860687-7647999999999999999999999998426788877776766561125778987710408978999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 99998743356766420123331100378742588899997424699702058578864442033245999999998737
Q gi|254780545|r 161 QEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240 (647)
Q Consensus 161 ~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~ 240 (647)
+|+|+|||+|+||+++|+++||||||+|||||||||||||+||||+||||++|||+|+|||||+|++|||+||++||++|
T Consensus 165 ~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~~vGvga~rVR~lF~~Ar~~a 244 (644)
T PRK10733 165 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA 244 (644)
T ss_pred HHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHEEEECCHHHHHHHHHHHHHCC
T ss_conf 99999812979999749979985177798998778999998645598089978477302225306899999999999669
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHH
Q ss_conf 80120632356414455789886268898899899853032357782999962981008833316564231410001347
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDI 320 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~ 320 (647)
|||||||||||+|++|+.+.+++||||+|||||||+|||||+.+++|||||||||||.|||||||||||||+|+|++||.
T Consensus 245 P~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCH
T ss_conf 97999953220366678988898328887899999995488887876999626997554777716888655999779898
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88999999985488777321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r 321 VGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT 400 (647)
Q Consensus 321 ~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~ 400 (647)
++|++||++|++++|+++|+|++.+|+.|+|||||||+|||||||++|+|++++.|++.||++|+|||++|+|+++++++
T Consensus 325 ~~R~~ILkvh~~~~~l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl~AaR~~k~~It~~d~e~A~drV~~G~ekks~~~s 404 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMT 404 (644)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89999999996488777311589884459986703332599999999987087543076689988885115345666689
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 66778999999999999985058773234322014555640564002443226899999999999878988888613687
Q gi|254780545|r 401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480 (647)
Q Consensus 401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ 480 (647)
++||++|||||||||||+|++++++||+||||+|||+|+|||+++|++|++++||++|+++|+++||||+|||++||.++
T Consensus 405 e~ek~~vAyHEAGHAlva~~l~~~dpv~KVTIiPRG~AlG~t~~~P~ed~~~~tk~~l~~~I~vlLGGRaAEel~fG~~~ 484 (644)
T PRK10733 405 EAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEH 484 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
T ss_conf 99999999999989999997689887217996547876773111685100042599999877886341887766607988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56523355899999999998624888766733404787674345656776787889999999999999999999999999
Q gi|254780545|r 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSII 560 (647)
Q Consensus 481 ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL 560 (647)
+||||+|||++||+||+.||++||||+++||+.|++.+++.|+|+++...++||++|++.||+||++|+++||++|++||
T Consensus 485 vTTGAsnDL~~AT~iAr~MV~~~GMSd~lGpv~~~~~~~~~flGr~~~~~~~~Se~ta~~ID~EV~~ii~eay~~A~~iL 564 (644)
T PRK10733 485 VSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLL 564 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77682788999999999999996888555871224677751346555556775899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9989999999999988854999999999722899998522245665556534
Q gi|254780545|r 561 QEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSEDDGVALCASVPQA 612 (647)
Q Consensus 561 ~~n~~~l~~la~~Lle~EtL~~~ei~~il~~~~~~~~~~~~~~~~~~~~~~~ 612 (647)
++|++.|++||++|||+|||+++||++||+++++++|..+............
T Consensus 565 ~~nr~~L~~lA~~LLEkETL~geEi~~Il~~~~~~p~~~~~~~~~~~~~~~~ 616 (644)
T PRK10733 565 TDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDN 616 (644)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9979999999999998738589999999669999999898888888889988
No 3
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=0 Score=1434.42 Aligned_cols=575 Identities=48% Similarity=0.794 Sum_probs=538.2
Q ss_pred CCCEEECHHHHHHHHHHCCEEEEEEECCEEEEEEEC-------CCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCH
Q ss_conf 774021589999999709915999988979999957-------9806999826882799999997798289985686521
Q gi|254780545|r 21 DGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVN-------GESSFQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSP 93 (647)
Q Consensus 21 ~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~-------g~~~~~t~~p~~~~~l~~~L~e~~V~v~~~~~~~~s~ 93 (647)
..+++|+||+|++++++|+|++|.+.++..++++.. ....+.+..|..++++++.|.+++|++...+..+. +
T Consensus 41 ~~~~~i~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~-~ 119 (631)
T CHL00176 41 QASSRMTYGRFLEYLDMGWVKRVDLYDNGRTAIVEASSPELGNRPQRIRVELPAGASELIQKLKEANVDIDAHPPVQT-S 119 (631)
T ss_pred CCCCEECHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC-C
T ss_conf 566352499999999739846999964873899983477667763389961688988999999986982887348877-6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999-99999999999998516--77887776766321000011242256988985288999999999874335
Q gi|254780545|r 94 GLLSYLGSWF-PLVLVVLVWMFLMRQIQ--GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDP 170 (647)
Q Consensus 94 ~~~~iL~~~L-PliLli~i~~fl~rr~~--gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~ 170 (647)
+|..++.+|+ |+++++++|+|++|.++ +|+++++|+|||||||++.+.+++|||+||+|+|++|+||+|+|+|||+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gks~ak~~~~~~~~vtF~DVaG~~eaK~el~EivdfLk~P 199 (631)
T CHL00176 120 IFITLLSNLLFPLILIGVLWFLFRRSSNKKGGPGQALMNFGKSKARFQMEAKTGITFNDVAGVEEAKEELEEVVTFLKKP 199 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 79999999999999999999999986015899878878868676521457899977532288589999999999983595
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 67664201233311003787425888999974246997020585788644420332459999999987378012063235
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeid 250 (647)
++|+++|+++||||||+|||||||||||||+||||+||||++|||+|+|||||+||+|||+||++||++|||||||||||
T Consensus 200 ~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiD 279 (631)
T CHL00176 200 ERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEID 279 (631)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 88764499689658988989987889999985655884699883785564215558999999999986399699987101
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 64144557898862688988998998530323577829999629810088333165642314100013478899999998
Q gi|254780545|r 251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
|+|++|+.+.+|+||||+|||||||+|||||++++||||||||||||.|||||||||||||+|+|++||.++|++||++|
T Consensus 280 aig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh 359 (631)
T CHL00176 280 AVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVH 359 (631)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 20114789888985089999999999842888788869998258855456866268877549982698989999999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 54887773211024544120379899999999987645532024210456899975013686556766686677899999
Q gi|254780545|r 331 SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYH 410 (647)
Q Consensus 331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyH 410 (647)
++++|+++|+|++.+|+.|+|||||||+|||||||++|+|++++.|+++||++|+|||++|+++ ++.++++||++||||
T Consensus 360 ~k~~~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal~AaR~~~~~it~~d~~~AidrV~~G~ek-~~~~~~~ekr~vAyH 438 (631)
T CHL00176 360 ARNKKLAEDVSLELIARRTPGFSGADLANLLNEAAILAARRRKNQITMSEIDEAIDRVIAGMEG-TPLADSKIKRLIAYH 438 (631)
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHH
T ss_conf 7078666530099998626998678887699999999998477764788999999999716566-677898999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99999999850587732343220145556405640024432268999999999998789888886136875652335589
Q gi|254780545|r 411 EAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIE 490 (647)
Q Consensus 411 EAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~ 490 (647)
|||||||+++|++++||+||||+|||+|+|||++.|++|++++||++|+++|+|+|||||||+++||.+++||||+|||+
T Consensus 439 EAGHAlVa~ll~~~dpV~KVTIiPRG~AlG~t~~~P~ed~~l~Tk~eL~~~I~vlLGGRaAEEivfG~~~vTTGAs~DL~ 518 (631)
T CHL00176 439 EVGHAIVGTLLPEHDPVQKVTLIPRGNARGLTWFTPNEDQSLISRSQLLARIVGALGGRAAEEVVFGSTEVTTGASNDLQ 518 (631)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 99999999977898760389981278865057776643323342999999999976257765532389887777278999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986248887667334047876743456567767878899999999999999999999999999989999999
Q gi|254780545|r 491 YATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAI 570 (647)
Q Consensus 491 ~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~l 570 (647)
+||+||+.||++|||| ++||+.|....++.|+|+++...++||++|+..||+||++||++||++|++||++|++.|++|
T Consensus 519 ~AT~iAr~MV~~~GMS-~lG~v~~~~~~~~~flG~~~~~~~~~Se~ta~~ID~EV~~il~~ay~~A~~iL~enr~~Le~L 597 (631)
T CHL00176 519 QVTSLARQMVTRFGMS-NIGPLALESQSGENFLGREMRSRSEYSEEIAIRIDKEVRKIVHTCYDYAYQILKDNRVVLDRL 597 (631)
T ss_pred HHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999985888-666753257777543455555566657999999999999999999999999999969999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999888549999999997228999985
Q gi|254780545|r 571 AEALLEYETLSGKEIASLIRGEKISRPS 598 (647)
Q Consensus 571 a~~Lle~EtL~~~ei~~il~~~~~~~~~ 598 (647)
|++|||+|||+++||++|+++++..+|.
T Consensus 598 Ae~LLekETL~geEi~~Il~~~~~~ppk 625 (631)
T CHL00176 598 VELLLEKETIDGDEFREIVSEYTILPPK 625 (631)
T ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCC
T ss_conf 9999984825899999997249999898
No 4
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=1289.86 Aligned_cols=572 Identities=58% Similarity=0.913 Sum_probs=539.7
Q ss_pred CCCCEEECHHHHHHHHHHCCEEEEEEECC--EEEEEEECCCEEEEEEECC--CCHHHHHHHHHCCCEEEEEECCCCCHHH
Q ss_conf 77740215899999997099159999889--7999995798069998268--8279999999779828998568652189
Q gi|254780545|r 20 QDGVQDISYSQFIKDVDAGRVRKISVIGT--HITGFYVNGESSFQTYMPL--VGSKLLDKLQSKDIEISSRPVNDGSPGL 95 (647)
Q Consensus 20 ~~~~~eIsYSeFlk~Le~g~V~sV~I~~~--~i~~~~~~g~~~~~t~~p~--~~~~l~~~L~e~~V~v~~~~~~~~s~~~ 95 (647)
+.....++|++|+..+..++|+++.+.++ .+..++.++ ..+.++.|. .++++...+..+++++....+ ...++|
T Consensus 19 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (596)
T COG0465 19 NSSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG-SKNTVYLPKGVNDPNLVSFLDSNNITESGFIP-EDNSLL 96 (596)
T ss_pred HCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEECCC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CCCCHH
T ss_conf 3246651199999997267851899827732899886488-60578705875547888888752886434678-764079
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999-8516778877767663210000112422569889852889999999998743356766
Q gi|254780545|r 96 LSYLGSWFPLVLVVLVWMFLM-RQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFK 174 (647)
Q Consensus 96 ~~iL~~~LPliLli~i~~fl~-rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~ 174 (647)
..++.+++|+++++++|+|++ |++++|+++++|+|||||||.+.+.+++|+|+||+|+|++|+|+.|+|+|||+|+||+
T Consensus 97 ~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~ 176 (596)
T COG0465 97 ASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQ 176 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999889999999999999999862577766667775889874135667675664186799999999999863855667
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf 42012333110037874258889999742469970205857886444203324599999999873780120632356414
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~ 254 (647)
++|+++|||+||+|||||||||||||+||||+||||++|||+|+|||||+||+|||+||++|+++||||||||||||+|+
T Consensus 177 ~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr 256 (596)
T COG0465 177 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 256 (596)
T ss_pred HCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCC
T ss_conf 52353456526855999872789999845468983530344464431478838889999985515996698763433145
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC
Q ss_conf 45578988626889889989985303235778299996298100883331656423141000134788999999985488
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV 334 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~ 334 (647)
+||.+.|||||||||||||||+|||||..++||+|||||||||.|||||||||||||+|.|++||..+|++||++|++++
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 45778899806999999888852015788875488526787433317652887766255447851565788878864157
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 77732110245441203798999999999876455320242104568999750136865567666866778999999999
Q gi|254780545|r 335 PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGH 414 (647)
Q Consensus 335 ~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGH 414 (647)
+++++||+..+|+.|+|||||||+|++||||++|+|+++..|++.||++|+|||++|+||+++++++.+|+.||||||||
T Consensus 337 ~l~~~V~l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagh 416 (596)
T COG0465 337 PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGH 416 (596)
T ss_pred CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 77766788898643778563067655668899998836846753453889999965877688646745403257889999
Q ss_pred HHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99998505877323432201455564056400244322689999999999987898888861368756523355899999
Q gi|254780545|r 415 AVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATK 494 (647)
Q Consensus 415 Alva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~ 494 (647)
|+++++++++||||||||+|||+|||||+++|++|++++|+++++++|+++||||+|||++||. ++||||+|||++||+
T Consensus 417 alv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~ 495 (596)
T COG0465 417 ALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATD 495 (596)
T ss_pred HHHHHHCCCCCCCCEEEECCCCHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCHHHHHHHHH
T ss_conf 9999727887620035522672220110038854532012778887999986671766646244-501352131899999
Q ss_pred HHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999862488876673340478767434565677678788999999999999999999999999999899999999999
Q gi|254780545|r 495 LARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEAL 574 (647)
Q Consensus 495 iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~la~~L 574 (647)
+|+.||++||||+++|++.|+..++ +|+|+.+ ..++||++|++.||.||++++++||+++++||.+|++.++.+++.|
T Consensus 496 ~ar~mVt~~Gms~~lG~v~~~~~~~-~flg~~~-~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~L 573 (596)
T COG0465 496 LARAMVTEYGMSAKLGPVAYEQVEG-VFLGRYQ-KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEML 573 (596)
T ss_pred HHHHHHHHCCCCHHHCCEEHHHCCC-CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998533518526536512322034-1004665-5567657789999999999889999999999998478999999999
Q ss_pred HHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 8885499999999972289999
Q gi|254780545|r 575 LEYETLSGKEIASLIRGEKISR 596 (647)
Q Consensus 575 le~EtL~~~ei~~il~~~~~~~ 596 (647)
+++|||+++++..|++.++.+.
T Consensus 574 le~Eti~~~~i~~i~~~~~~~~ 595 (596)
T COG0465 574 LEKETIDAEEIKDILAGRKLPS 595 (596)
T ss_pred HHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8764168888999982356789
No 5
>KOG0731 consensus
Probab=100.00 E-value=0 Score=1154.79 Aligned_cols=565 Identities=50% Similarity=0.778 Sum_probs=499.4
Q ss_pred CEEECHHHHH-HHHHHCCEEEEEEEC-CEE-EEEEECC--------CEEEEEEECCCCHHHHHHHHHC----CCE-EEEE
Q ss_conf 4021589999-999709915999988-979-9999579--------8069998268827999999977----982-8998
Q gi|254780545|r 23 VQDISYSQFI-KDVDAGRVRKISVIG-THI-TGFYVNG--------ESSFQTYMPLVGSKLLDKLQSK----DIE-ISSR 86 (647)
Q Consensus 23 ~~eIsYSeFl-k~Le~g~V~sV~I~~-~~i-~~~~~~g--------~~~~~t~~p~~~~~l~~~L~e~----~V~-v~~~ 86 (647)
.++++|++|+ +++++|.|.++++.+ ... ..++..+ ...+..+.+ -+.|.+.+... ++. +...
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~--v~~F~~kl~~a~~~l~~~~~~~~ 240 (774)
T KOG0731 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS--VDNFERKLDEAQRNLGIDTVVRV 240 (774)
T ss_pred CEEEEHHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEEEE--CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4043199999987604622567863230268999731554665400378888300--43077777888887477743676
Q ss_pred ECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5686-5218999999999999999999999985167------78877767663210--0001124225698898528899
Q gi|254780545|r 87 PVND-GSPGLLSYLGSWFPLVLVVLVWMFLMRQIQG------GGARGAMGFGKSKA--KLLSGNVGSVTFKDVAGVDEAK 157 (647)
Q Consensus 87 ~~~~-~s~~~~~iL~~~LPliLli~i~~fl~rr~~g------Gg~~~~msfGKSkA--k~~~~~~~~v~f~dv~g~~~~k 157 (647)
|... ....+..++..++|.+++++..++++|++++ |++.+++.|+.+++ |+..+.+++|+|+||||+|++|
T Consensus 241 pV~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731 241 PVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 47997232156676655689999876751453025555668766667632400355032115789887601026708999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999998743356766420123331100378742588899997424699702058578864442033245999999998
Q gi|254780545|r 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~ 237 (647)
+||+|+|.|||||++|+++|+++|||+||+|||||||||||||+|||||||||++|||+|+|||||+|++|||+||..||
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999843989998747767675178789998678999988530589646413378888760343488899998743
Q ss_pred HHCCHHEEHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf 7378012063235641445-578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r 238 NNSPCIVFVDEIDAVGRHR-GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316 (647)
Q Consensus 238 ~~~p~iifiDeida~~~~r-~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~ 316 (647)
++||||||||||||+|++| |.+.+++|+||||||||||+|||||.++.+|||+|||||||.||+||+|||||||+|+|+
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf 26980797145420031255666678880788899988787527767784799811688664288764987555523246
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 134788999999985488777-3211024544120379899999999987645532024210456899975013686556
Q gi|254780545|r 317 NPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERR 395 (647)
Q Consensus 317 ~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~ 395 (647)
+||..+|.+||++|+++++++ +++|+..+|..|+|||||||+|||||||+.|+|++...|+..||++|++|+++|.+++
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 98514168999998621577631567999986089996789986424999999873367301564999999986122345
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76668667789999999999999850587732343220145556405640024432268999999999998789888886
Q gi|254780545|r 396 STAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFT 475 (647)
Q Consensus 396 ~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~ 475 (647)
++.++.+|++.+||||||||+++|+|+++||+.||||+| |+++||++|.|.++ +++|+.+|+++||++||||||||++
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~ 638 (774)
T KOG0731 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV 638 (774)
T ss_pred CHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEECC-CCCCCEEEECCCCC-CCCCHHHHHHHHHHHHCCCHHHHEE
T ss_conf 011077765342212125232201345667401687336-77465378777645-3233899998899885762033203
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13687565233558999999999986248887667334047876743456567767878899999999999999999999
Q gi|254780545|r 476 FGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQK 555 (647)
Q Consensus 476 fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~ 555 (647)
|| +++||||++||++||++||.||++||||+++|++++.. ....++...++||+.+++.||.||++|++.||++
T Consensus 639 fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~-----~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~ 712 (774)
T KOG0731 639 FG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQM-----LLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYER 712 (774)
T ss_pred CC-CCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEECCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27-75671110408899999999998717544457312257-----6665542237531457888889999987647788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 999999989999999999988854999999999722899998
Q gi|254780545|r 556 AKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRP 597 (647)
Q Consensus 556 a~~iL~~n~~~l~~la~~Lle~EtL~~~ei~~il~~~~~~~~ 597 (647)
|.++|+.|++.++.|++.||++|+|+++|+.+++...+...+
T Consensus 713 ~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731 713 TKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf 999998619999999999876620446889998635888632
No 6
>KOG0734 consensus
Probab=100.00 E-value=0 Score=1136.39 Aligned_cols=476 Identities=55% Similarity=0.851 Sum_probs=440.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999985167788777676632-1000011242256988985288999999999874335676642012
Q gi|254780545|r 101 SWFPLVLVVLVWMFLMRQIQGGGARGAMGFGKS-KAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGR 179 (647)
Q Consensus 101 ~~LPliLli~i~~fl~rr~~gGg~~~~msfGKS-kAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~ 179 (647)
.++.++++.|++.++.....+ +.|.-+-. ..+...+...+|||+||-|+||+|+||+|||+|||+|+||+++|++
T Consensus 260 ~i~~~~~~~G~~~~~~~~~l~----~i~~~~~gl~~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK 335 (752)
T KOG0734 260 TIVGYLLLLGIYALLENTGLS----GIFRSTTGLDSEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK 335 (752)
T ss_pred HHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 999999998888986454544----3000133654446846641655002147278999999999986090876431475
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCC
Q ss_conf 33311003787425888999974246997020585788644420332459999999987378012063235641445578
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG 259 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~ 259 (647)
.||||||.|||||||||||||+||||+||||+.+||+|-|||||+||+|||+||+.||+.||||||||||||+|.+|...
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~ 415 (752)
T KOG0734 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS 415 (752)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCC
T ss_conf 88853876899975569999860556897474166204454220148999999999873498599972002205667862
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98862688988998998530323577829999629810088333165642314100013478899999998548877732
Q gi|254780545|r 260 LGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPN 339 (647)
Q Consensus 260 ~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~ 339 (647)
.. | ...|||||||+|||||..|+|||||||||+||.||+||+||||||++|.|++||..||.+||+.|++++++++|
T Consensus 416 ~~--~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~ 492 (752)
T KOG0734 416 DQ--H-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDED 492 (752)
T ss_pred HH--H-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 77--8-99989999999842867688669995168745556873488755336746897733289999999834876567
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 11024544120379899999999987645532024210456899975013686556766686677899999999999998
Q gi|254780545|r 340 VILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVAC 419 (647)
Q Consensus 340 ~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~ 419 (647)
||+..||+-|+|||||||+|+||.||+.|+.++...|+|.||+.|.|||+||+|||++.++++-|+++||||+|||+||+
T Consensus 493 VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~ 572 (752)
T KOG0734 493 VDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVAL 572 (752)
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 78767226889876578998888999999863740110887765443321152113344681454434433267258875
Q ss_pred HCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 50587732343220145556405640024432268999999999998789888886136875652335589999999999
Q gi|254780545|r 420 HVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVM 499 (647)
Q Consensus 420 ~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~m 499 (647)
+++++.|+||+||+|||.+||.|.++|+.|++..||.+|++++.|+||||+|||++||.++|||||++||++||++|++|
T Consensus 573 yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~M 652 (752)
T KOG0734 573 YTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRM 652 (752)
T ss_pred ECCCCCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 12788664302532577666631346865404577999999877762305778886067755566530278899999999
Q ss_pred HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86248887667334047876743456567767878899999999999999999999999999989999999999988854
Q gi|254780545|r 500 VTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYET 579 (647)
Q Consensus 500 V~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a~~iL~~n~~~l~~la~~Lle~Et 579 (647)
|++||||+++||+++....+ ..+++.+|...||.||+++|.++|+||+.||+.|...++.||++||++||
T Consensus 653 Vt~fGMSd~vG~v~~~~~~~----------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYET 722 (752)
T KOG0734 653 VTKFGMSDKVGPVTLSAEDN----------SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYET 722 (752)
T ss_pred HHHCCCCCCCCCEEEECCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99708655436434223578----------88878005888999999999999999999999878999999999877524
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 99999999972289
Q gi|254780545|r 580 LSGKEIASLIRGEK 593 (647)
Q Consensus 580 L~~~ei~~il~~~~ 593 (647)
|+++||+.+++|..
T Consensus 723 L~A~eik~vl~g~~ 736 (752)
T KOG0734 723 LDAKEIKRVLKGKS 736 (752)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 78999999972563
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=634.63 Aligned_cols=257 Identities=46% Similarity=0.773 Sum_probs=248.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf 01124225698898528899999999987-43356766420123331100378742588899997424699702058578
Q gi|254780545|r 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSD 216 (647)
Q Consensus 138 ~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~ 216 (647)
-..++|++||+||+|+++..+|++|+|+. |++|+.|.++|+.|||||||||||||||||||||+|+++++.|+.+.||+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred EECCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 11258987865335889999999998403366888999749999971276689997588999998720586699942199
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 86444203324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
||.+|+|+|++-||++|+.||.+||||||||||||||.+|.....||..|-.+|+-|||.|||||+...+|=||+|||||
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 99998341169999999987414984999831122311113688885099999999999860588978876899855885
Q ss_pred CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00883331656423141000134788999999985488777321102454412037989999999998764553202421
Q gi|254780545|r 297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLV 376 (647)
Q Consensus 297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i 376 (647)
|.|||||||||||||+|+||+||.++|.+||++|++++.++++||++.||+.|.|||||||.++|.||.++|+|+++..|
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred CCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 55576650887545301168989789999999876214676676999998753899567799999987599998604733
Q ss_pred CHHHHHHHHHHCCCCCCC
Q ss_conf 045689997501368655
Q gi|254780545|r 377 TMQEFEDAKDKILMGAER 394 (647)
Q Consensus 377 ~~~dl~~A~~rv~~G~ek 394 (647)
+++||.+|++||+.+..+
T Consensus 381 t~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 381 TMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 399999999999721454
No 8
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=0 Score=629.30 Aligned_cols=259 Identities=47% Similarity=0.757 Sum_probs=247.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
..++|+|+|+||+|++++|++++|+|.+ |++|+.|.++|++|||||||||||||||||||||+|+|+++|||.+++|++
T Consensus 123 v~e~P~v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l 202 (390)
T PRK03992 123 VIESPDVTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 202 (390)
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 14799998466149899999999999998659899997699999727868989997899999999874888799667997
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
+++|+|+|+++||++|+.||+++||||||||||++|++|..+..+++.+-.++++|||+|||||+...+|+|||||||||
T Consensus 203 ~sk~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd 282 (390)
T PRK03992 203 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPD 282 (390)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
T ss_conf 52454179999999999999709908971432566335677888620889999999999744877778827996069810
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 08833316564231410001347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~ 377 (647)
.|||||+||||||++|+|++||.++|.+||++|++++++++++|++.+|+.|+|||||||+++|+||++.|+|+++..|+
T Consensus 283 ~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~ 362 (390)
T PRK03992 283 ILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVT 362 (390)
T ss_pred HCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 05977754776523887089499999999999847999998889999997687998999999999999999985898608
Q ss_pred HHHHHHHHHHCCCCCCCCCC
Q ss_conf 45689997501368655676
Q gi|254780545|r 378 MQEFEDAKDKILMGAERRST 397 (647)
Q Consensus 378 ~~dl~~A~~rv~~G~ek~~~ 397 (647)
++||++|+.+|+.+.+++..
T Consensus 363 ~~Df~~Ai~kv~~~~~~~~~ 382 (390)
T PRK03992 363 MEDFLKAIEKVMGKEEKEEY 382 (390)
T ss_pred HHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999678650110
No 9
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=627.37 Aligned_cols=253 Identities=47% Similarity=0.775 Sum_probs=246.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r 137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
+-..++|+|+|+||+|+++--+|++|.|.. ||+|+.|.++|+.|||||||||||||||||||||+|+|....|+.+-||
T Consensus 111 ~EV~E~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgS 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred EEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 77621782334026787899999988873468883167762889898657007579768899998631455126886044
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
+||.+|+|+||+-||++|+.||+.|||||||||||||+.+|-....+|.-|-.+||-|||.|||||+...+|-|||||||
T Consensus 191 ElV~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 44444413316899999998530698168610133354321146778731578899999975248887676168872076
Q ss_pred CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r 296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL 375 (647)
Q Consensus 296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~ 375 (647)
+|+||||+||||||||.|+||+|+.+||.+||++|++++++++|||++.||+.|.|+|||||..+|.||.++|+|+.+..
T Consensus 271 ~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~ 350 (364)
T TIGR01242 271 PDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred CHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 20204321488861325731697832205665552100001235687999987478866304234346204777744567
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 10456899975013
Q gi|254780545|r 376 VTMQEFEDAKDKIL 389 (647)
Q Consensus 376 i~~~dl~~A~~rv~ 389 (647)
|||.||..|++||+
T Consensus 351 vT~~Df~kAv~Kv~ 364 (364)
T TIGR01242 351 VTMDDFLKAVEKVL 364 (364)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 66999999987319
No 10
>KOG0730 consensus
Probab=100.00 E-value=0 Score=592.35 Aligned_cols=247 Identities=43% Similarity=0.758 Sum_probs=235.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
.-+.++|+|+||+|++++|.+|++.|.| +++|++|.++|..||||||||||||||||++|||+|+||+++|++++|+++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred ECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHH
T ss_conf 02478878220457899999999998616656599987257887547777899862478999986463587264157899
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
.+||||++++.||++|++||+.+|||||+||||+++..|+++.+ .-.+++|||||+||||++..++|+|||||||||
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730 505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf 87751825899999999986269837744666666630478755---148999999998700410147089995058810
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CCC
Q ss_conf 088333165642314100013478899999998548877732110245441203798999999999876455320--242
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN--RRL 375 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~--~~~ 375 (647)
.||+||+||||||+.|||++||.++|.+||+.|++++|++++||++.||..|.|||||||.+||+||++.|+|++ ...
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~ 661 (693)
T KOG0730 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE 661 (693)
T ss_pred HCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 12697759865330575158347889999999973399986556999999854677389999999999999987526543
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 1045689997501
Q gi|254780545|r 376 VTMQEFEDAKDKI 388 (647)
Q Consensus 376 i~~~dl~~A~~rv 388 (647)
|++.||++|+..+
T Consensus 662 i~~~hf~~al~~~ 674 (693)
T KOG0730 662 ITWQHFEEALKAV 674 (693)
T ss_pred CCHHHHHHHHHHC
T ss_conf 4489999999850
No 11
>KOG0733 consensus
Probab=100.00 E-value=0 Score=564.07 Aligned_cols=230 Identities=44% Similarity=0.721 Sum_probs=217.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
....+++.|+|++|+|..-.+|++++.++++|+-|..+|.+||||+|||||||||||+||+|+|||++||||++++++++
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733 181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 78988863654167389999999999885281168662877997516448998647899999752128854851414653
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC----CCEEEEEECC
Q ss_conf 444203324599999999873780120632356414455789886268898899899853032357----7829999629
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS----EGVILIAATN 294 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~----~~v~vi~aTn 294 (647)
+-+-|+++.+||+||++|+.+||||+||||||||+++|... +.+...+++.|||++||++... .+|+||||||
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a---qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA---QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 15575228999999998736697599851100136440457---889999999999985100256666899769982478
Q ss_pred CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81008833316564231410001347889999999854887773211024544120379899999999987645532
Q gi|254780545|r 295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
|||.|||||.|+|||||.|.++.||..+|.+||++.++++.++.++|+++||+.||||.||||..||.+||..|+++
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97655877732565532353068966889999999986277787768999975188752141999999999999999
No 12
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00 E-value=0 Score=528.37 Aligned_cols=234 Identities=46% Similarity=0.792 Sum_probs=223.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
--+-|+|+|+||+|++++|++|+|.|+| ||.|+-|.++|++||||+||||||||||||||||+|.|.+.+|+++.|+++
T Consensus 532 ~~evP~v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~ 611 (980)
T TIGR01243 532 LVEVPNVKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 611 (980)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 02337511001466789999998775234440589986078899734874689861688888774014564677407312
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
+++|||++++++|++|++||+.||||||+|||||+++.||...... .-.++++||||+||||+....+|+|||||||||
T Consensus 612 lskWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPd 690 (980)
T TIGR01243 612 LSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPD 690 (980)
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 2344032479999999986412873787302111054124421001-026899999998640443436658986158874
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0883331656423141000134788999999985488777321102454412037989999999998764553202
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
+|||||||||||||.|+||.||.++|.+||++|++.+++++|+|++.||+.|+||+||||+.+|+||++.++|+.-
T Consensus 691 i~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~ 766 (980)
T TIGR01243 691 ILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV 766 (980)
T ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2361004887412168605985567676765531113530134389998651687632299999999999999973
No 13
>KOG0736 consensus
Probab=100.00 E-value=0 Score=514.72 Aligned_cols=258 Identities=38% Similarity=0.689 Sum_probs=232.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
.|..|+|+|+||+|++++|.++.+.++. ||+|+.|.. |.+.-.||||||||||||||+|||+|.||...|+++.|+|+
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHH
T ss_conf 98889646001557899999999875475437566512-54313505887799985579999987543036785058899
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323--5778299996298
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE--SSEGVILIAATNR 295 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~--~~~~v~vi~aTn~ 295 (647)
+.||||+++.+||++|++||..+|||||+||||+++++||...-+|+ .-++++.|||.||||++ ++++|+|||||||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 88774301888999999854469749983121232756788788654-08999999999862666788886599825888
Q ss_pred CCCCCHHHCCCCCCCCEEEECHHHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1008833316564231410001347-889999999854887773211024544120-37989999999998764553202
Q gi|254780545|r 296 PDVLDAALLRPGRFDRQITVPNPDI-VGREHILMVHSRNVPLAPNVILKTIARGTP-GFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 296 ~~~lD~al~RpgRfd~~i~~~~P~~-~~r~~i~~~~~~~~~~~~~~d~~~la~~t~-g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
||.||||||||||||+.+||+.++- +.+..||+-.+++.++++|||+..+|+.++ .|||||+-.||..|.+.|+++.-
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred CCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 55457655388765524885588567889999999887702878767999996389677524799998899999999997
Q ss_pred -----------------CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf -----------------42104568999750136865567666866778
Q gi|254780545|r 374 -----------------RLVTMQEFEDAKDKILMGAERRSTAMTEEEKK 405 (647)
Q Consensus 374 -----------------~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~ 405 (647)
-.|+++||.+|.+|. ...+++.|.+
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l-------~PSvS~~EL~ 942 (953)
T KOG0736 901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRL-------QPSVSEQELL 942 (953)
T ss_pred HHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHC-------CCCCCHHHHH
T ss_conf 77650553300148851788789999999860-------9752199999
No 14
>KOG0733 consensus
Probab=100.00 E-value=0 Score=511.30 Aligned_cols=256 Identities=42% Similarity=0.711 Sum_probs=234.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 12422569889852889999999-99874335676642012333110037874258889999742469970205857886
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
...|+|+|+||+|+++++.+|+. |+...|+|+.|+++|..+|.||||+|||||||||||||+|+|+|.+|+++.|++++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred EECCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 32699876641249999999999986002388899982888987238757998618899999850304754762388999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.||||+++..||.+|.+||.++|||||||||||+.++|+.+..+ -..+++|||||||||.+.+.||+|||||||||+
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCH---HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 87742378999999998623898389851112027655777750---589999999987316211142599950689765
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 8833316564231410001347889999999854--887773211024544120--37989999999998764553202-
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTP--GFSGADLRNLVNEAALMAARRNR- 373 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~--g~sgAdi~~~~~eAa~~a~r~~~- 373 (647)
+|||+|||||||+..||++|+..+|.+||+.+++ +.|+++|||++.||+.+. |||||||+.||+||++.|.|+.-
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred CCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55655187755742450699878899999998535799887545899985123226875365999999999999999986
Q ss_pred ---------------CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf ---------------42104568999750136865567666866778
Q gi|254780545|r 374 ---------------RLVTMQEFEDAKDKILMGAERRSTAMTEEEKK 405 (647)
Q Consensus 374 ---------------~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~ 405 (647)
-.+++.||++|+.+|. ...++.+++
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~-------pSv~~~dr~ 779 (802)
T KOG0733 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR-------PSVSERDRK 779 (802)
T ss_pred HCCCCCCCCCEEEEEEEECHHHHHHHHHHCC-------CCCCHHHHH
T ss_conf 1112576630232002430899999998638-------885378899
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=0 Score=482.83 Aligned_cols=240 Identities=30% Similarity=0.435 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 2422569889852889999999-998743356766420123331100378742588899997424699702058578864
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
..++.+|+||+|++..|+.|.. -..|.... ..+|.++||||||+|||||||||+|||+|+|+++||+.++++++++
T Consensus 221 ~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a---~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~ 297 (491)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQA---ENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG 297 (491)
T ss_pred EECCCCCHHCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 7489980414688999999999889862336---6459999987999799998789999999866389469966799756
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
+|||++++++|++|+.|++.+||||||||||+....|++...+ ....++++|||++|+ +...+|+||||||+|+.|
T Consensus 298 ~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~~d~--g~s~rv~~~~Lt~m~--e~~~~VfViattN~~~~L 373 (491)
T CHL00195 298 GIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDSKGDS--GTSNRVLATFITWLS--EKKSPVFVVATANNIDSL 373 (491)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCC
T ss_conf 0067049999999999986198589974654542588888887--232899999999864--689976999958997558
Q ss_pred CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 83331656423141000134788999999985488-777-3211024544120379899999999987645532024210
Q gi|254780545|r 300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~ 377 (647)
||||+||||||++|+|++||.++|++||++|+++. +.. .++|++.||+.|+|||||||+++|++|+..|..++ +.++
T Consensus 374 ~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~-r~~~ 452 (491)
T CHL00195 374 PLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEK-REFT 452 (491)
T ss_pred CHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf 987708987770476489598999999999985447887554699999976859888999999999999998758-8665
Q ss_pred HHHHHHHHHHC
Q ss_conf 45689997501
Q gi|254780545|r 378 MQEFEDAKDKI 388 (647)
Q Consensus 378 ~~dl~~A~~rv 388 (647)
.+||..|+..+
T Consensus 453 ~~dl~~a~~~~ 463 (491)
T CHL00195 453 TEDICLALKQL 463 (491)
T ss_pred HHHHHHHHHHC
T ss_conf 89999999817
No 16
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00 E-value=0 Score=483.30 Aligned_cols=372 Identities=37% Similarity=0.575 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 24225698898528899999999987-43356766420123331100378742588899997424699702058578864
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
.-|+|||.||+|+++.++.++|+|+. |++|+.|.++|+.||||+||||||||||||||||+|+|++..|+++.|+++++
T Consensus 199 ~~P~vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeims 278 (980)
T TIGR01243 199 KVPEVTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMS 278 (980)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 17742033203358999999998843575647898618899873587558986178999998753055178850603443
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
+|+|+++.++|++|+.|.++||+|||||||||++++|..-.| .-| .+++.|||+.|||+..+..|+||||||||+.|
T Consensus 279 ky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~G--eve-~r~v~qlltlmdGlk~rG~v~viGatnrP~a~ 355 (980)
T TIGR01243 279 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVE-KRVVAQLLTLMDGLKGRGKVIVIGATNRPDAL 355 (980)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 313630789999998653058707874121100764100001--688-99999999997400248728998146885002
Q ss_pred CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
Q ss_conf 833316564231410001347889999999854887773211--------------------------------------
Q gi|254780545|r 300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVI-------------------------------------- 341 (647)
Q Consensus 300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d-------------------------------------- 341 (647)
||||.|||||||.|.|+.||.++|.+||++|++++|+.+|+|
T Consensus 356 dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (980)
T TIGR01243 356 DPALRRPGRFDREIEIGVPDKEGRKEILQIHTRNMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSEDEI 435 (980)
T ss_pred CHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62242788644335741885456788887641478750110057899999876665566788999999988631026789
Q ss_pred ----------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------------------CCCCCHHH
Q ss_conf ----------------------0245441203798999999999876455320-------------------24210456
Q gi|254780545|r 342 ----------------------LKTIARGTPGFSGADLRNLVNEAALMAARRN-------------------RRLVTMQE 380 (647)
Q Consensus 342 ----------------------~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~-------------------~~~i~~~d 380 (647)
++.||..|+||+||||+.+|+|||+.+.|+- .-.+|+.|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG~~Gadlaal~~eaam~~lrr~~~eg~i~~ea~~iP~~vl~~lkvt~~d 515 (980)
T TIGR01243 436 KEILKEDGNVYVEVRNRLIDKLLDKLAEVTHGFVGADLAALAKEAAMAALRRLIREGKINLEAEEIPKEVLEELKVTMKD 515 (980)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975012124678999999999988654236203559999899999999987402774502677579999873222899
Q ss_pred HHHHHHHCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHH-H
Q ss_conf 899975013686556766---------686677899999999999998505877323432201455564056400244-3
Q gi|254780545|r 381 FEDAKDKILMGAERRSTA---------MTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEAD-R 450 (647)
Q Consensus 381 l~~A~~rv~~G~ek~~~~---------~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d-~ 450 (647)
|.+|+..|.-..=|.-.+ +.--|--.-+..|| |-|-|+......|+-|-|- -|+.+|-|... +
T Consensus 516 f~ealk~~~P~~~re~~~evP~v~W~diGGlee~kq~lrea----veWPlk~~~~f~k~G~~PP---~Gvll~GPPGtGk 588 (980)
T TIGR01243 516 FKEALKMVEPSALREVLVEVPNVKWEDIGGLEEVKQELREA----VEWPLKAPEVFEKLGIRPP---KGVLLFGPPGTGK 588 (980)
T ss_pred HHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHHHCCCCCC---CCEEEECCCCCCH
T ss_conf 99998510623411000233751100146678999999877----5234440589986078899---7348746898616
Q ss_pred HC-----------------------CCHHHHHHHH--HHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHH-HHHHHH
Q ss_conf 22-----------------------6899999999--99987898888861368756-----52335589999-999999
Q gi|254780545|r 451 HS-----------------------TTYVWMTSRL--TILMGGRVAEEFTFGEDNVT-----SGAMSDIEYAT-KLARVM 499 (647)
Q Consensus 451 ~~-----------------------~tk~~l~~~i--~v~LgGRaAEei~fG~~~it-----tGAs~DL~~AT-~iA~~m 499 (647)
.+ .+-.+-+..| ..--+-.+|--++|= +++. -|...+-...| ++..+|
T Consensus 589 tllakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~aP~~~f~-deidaiaP~rG~~~~~~~vtd~~~nql 667 (980)
T TIGR01243 589 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFF-DEIDAIAPARGASLDEKGVTDRIVNQL 667 (980)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8888877401456467740731223440324799999999864128737873-021110541244210010268999999
Q ss_pred HHHC-CCCCCCCCEEECCCCCCCCC
Q ss_conf 8624-88876673340478767434
Q gi|254780545|r 500 VTQF-GFSNLLGKVSYEEGQQEALL 523 (647)
Q Consensus 500 V~~~-GMs~~lG~i~~~~~~~~~~l 523 (647)
.++. ||.+.-+.+.....+....+
T Consensus 668 l~e~dG~~~~~~vvvi~atnrPdi~ 692 (980)
T TIGR01243 668 LTELDGLEELSDVVVIAATNRPDIL 692 (980)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 9864044343665898615887423
No 17
>KOG0729 consensus
Probab=100.00 E-value=0 Score=481.39 Aligned_cols=260 Identities=41% Similarity=0.729 Sum_probs=248.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 001124225698898528899999999987-4335676642012333110037874258889999742469970205857
Q gi|254780545|r 137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
+..+++|+||+.||+|+.+..+.++|+|+. |-+|++|.++|+-|||||||||||||||||+|+|+|+..+.-|+.+-||
T Consensus 166 M~VEekPDvTY~DvGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGS 245 (435)
T KOG0729 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 87512798630345366999999999884325588888752789987337868999861089998745667458763118
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
+++.+|||+||..||+||+.||....||||+|||||+|..|=....||..|-.+|+-+|+.++|||+.+.++-|+.||||
T Consensus 246 ELVQKYvGEGARMVRElFeMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNR 325 (435)
T KOG0729 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 99999862468999999998523652799841010226720357888727999999999986037788887589863489
Q ss_pred CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10088333165642314100013478899999998548877732110245441203798999999999876455320242
Q gi|254780545|r 296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL 375 (647)
Q Consensus 296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~ 375 (647)
||.|||||+||||+||++++++||.++|..||++|.+.+....|+-++.||+.|+.-+||+|.++|.||.+.|+|..++.
T Consensus 326 PdtLDpALlRPGRlDRKVEF~LPDlegR~~I~kIHaksMsverdIR~eLlarLCpnsTGAeiRSVCtEAGMfAIraRRkv 405 (435)
T KOG0729 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred CCCCCHHHCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88768766287642311210587623551257774111442322169999865889742578888877437888877622
Q ss_pred CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 104568999750136865567
Q gi|254780545|r 376 VTMQEFEDAKDKILMGAERRS 396 (647)
Q Consensus 376 i~~~dl~~A~~rv~~G~ek~~ 396 (647)
.|..||.+|+++|+-|-.|-|
T Consensus 406 aTEKDFL~Av~KVvkgy~KFS 426 (435)
T KOG0729 406 ATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 008889999999987777416
No 18
>KOG0738 consensus
Probab=100.00 E-value=0 Score=468.52 Aligned_cols=260 Identities=39% Similarity=0.583 Sum_probs=230.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 112422569889852889999999-9987433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
....++++|+||+|+.+||+-|+| +|-.+.-|+-|+- +-+|.|||||+|||||||||||||||.||+..||.||.|.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 60599867676316499999999887544424888742-44653000556799974789999998861672787402456
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCC---EEEEEEC
Q ss_conf 644420332459999999987378012063235641445578988626889889989985303235-778---2999962
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES-SEG---VILIAAT 293 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~-~~~---v~vi~aT 293 (647)
+++|-|++++-||-||+.||..||++|||||||+|+.+||.. +-|.-..++-++||++|||... .++ |+|+|||
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 555325269999999999987488535335677887257986--503678888889999863344444565169998436
Q ss_pred CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98100883331656423141000134788999999985488777321102454412037989999999998764553202
Q gi|254780545|r 294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
|.|+.||.||+| ||+++|+|+|||.++|.+.|++.++..+++++++++.||..+.|||||||.|+|++|++++.|+.-
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCCCHHHHHHH--HHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 898205799999--876303312878789999999762356688875699999985688737799999999999999997
Q ss_pred -----------------CCCCHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHH
Q ss_conf -----------------4210456899975013686556766---6866778999
Q gi|254780545|r 374 -----------------RLVTMQEFEDAKDKILMGAERRSTA---MTEEEKKITA 408 (647)
Q Consensus 374 -----------------~~i~~~dl~~A~~rv~~G~ek~~~~---~~~~ek~~vA 408 (647)
..|++.||++|+.+| +++.. +..+|||+.-
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v-----~pSvs~~d~~k~ekW~~e 487 (491)
T KOG0738 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKV-----RPSVSAADLEKYEKWMDE 487 (491)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHH
T ss_conf 24791776443231434565156599999970-----867788899999999987
No 19
>KOG0726 consensus
Probab=100.00 E-value=0 Score=476.66 Aligned_cols=253 Identities=39% Similarity=0.699 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
+..|.-||+||+|++.-.+|++|.|+. |.+|+.|..||++|||||+|||+|||||||||||+|+.....|+-+.||+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 34850111344257899999998633888987899972889997058867999753688887724552124556508999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.+|.|.|++-||++|+.|..+||||+|||||||||.+|-....||..|-.+|+-+||-++|||+++..|-||.|||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 98736551999999988875298269864001104521347885078999999999874268665677589974165344
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM 378 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~ 378 (647)
|||||+||||.||+|++++||.+.++.||.+|+.++.+++||+++.+...-..+|||||..+|.||.++|.|+.|..+++
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~ 416 (440)
T KOG0726 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTM 416 (440)
T ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 67755278754311125797556323156875024300124669997520133563108889877768999998762153
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 56899975013686
Q gi|254780545|r 379 QEFEDAKDKILMGA 392 (647)
Q Consensus 379 ~dl~~A~~rv~~G~ 392 (647)
+||..|.++|++-.
T Consensus 417 ~DF~ka~e~V~~~K 430 (440)
T KOG0726 417 EDFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 87999999987740
No 20
>KOG0727 consensus
Probab=100.00 E-value=0 Score=470.08 Aligned_cols=250 Identities=40% Similarity=0.684 Sum_probs=240.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
.++|+|++.||+|+|--|+|++|.|+. |.+.+.|...|+-||+||||||||||||||||||+|+.....|+.+.||+|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHH
T ss_conf 77898641345662112899998883653078899970889986227757999757899999861261114463018999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.+|.|+|+..||++|..||++||+||||||||||+.+|=....|...|-.++|-+||.+||||+.+.+|-||.||||.|.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 99855483899999998761698379862245676641244446318999999999975147676665589983275556
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM 378 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~ 378 (647)
||||||||||+||+|++++||...++-+|...+.++.+++++|++.+..+-.-.|||||..+|.||.++|+|.++-.|..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEH
T ss_conf 68766287643444357798546652227754310267854488987418543434669999999768998762546527
Q ss_pred HHHHHHHHHCC
Q ss_conf 56899975013
Q gi|254780545|r 379 QEFEDAKDKIL 389 (647)
Q Consensus 379 ~dl~~A~~rv~ 389 (647)
.||++|+.+++
T Consensus 387 kd~e~ay~~~v 397 (408)
T KOG0727 387 KDFEKAYKTVV 397 (408)
T ss_pred HHHHHHHHHHC
T ss_conf 77999998650
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=467.24 Aligned_cols=246 Identities=50% Similarity=0.797 Sum_probs=231.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
...+.++|+|++|++++|+++++.|.+ ++.|+.|.+.|.++|+|+||||||||||||||||+|.+++.+|+++.+++++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 03688514532363779999999999999708876325898883699988999758999999875449824884335554
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
++|+|+.+++||++|..|++.+||||||||||+++..|+.+..++. ++++||||++|||.+..++|+||||||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~---~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHH---HHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 0776599999999999999669988974886667412899876379---9999999999747544376489964798332
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf 883331656423141000134788999999985488--77732110245441203798999999999876455320-242
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV--PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN-RRL 375 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~-~~~ 375 (647)
+|||++||||||+.|+|++||..+|.+||++|+++. ++..++|+..+|+.|.|||||||+++|.||++.+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred CCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 68756243663037871798989999999998541565115564199999875277899999999999998998545776
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 1045689997501
Q gi|254780545|r 376 VTMQEFEDAKDKI 388 (647)
Q Consensus 376 i~~~dl~~A~~rv 388 (647)
|+++||.+|+.++
T Consensus 471 ~~~~~~~~a~~~~ 483 (494)
T COG0464 471 VTLDDFLDALKKI 483 (494)
T ss_pred CCHHHHHHHHHHC
T ss_conf 3499999998624
No 22
>KOG0652 consensus
Probab=100.00 E-value=0 Score=471.72 Aligned_cols=252 Identities=41% Similarity=0.686 Sum_probs=242.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 112422569889852889999999-9987433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
..++|.-+++||+|+|.-.+||-| ||-.+.++++|.++|++||||+|+||||||||||+|+|+|...+..|+...|+++
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHH
T ss_conf 04687432000325789999999886145656878874688899722765799975779999998740106887326477
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
+.||.|.||+-||+.|..|++.+||||||||+||||.+|-.+-..|..|-.+|+-+||-++|||++++.|-|||||||.|
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf 76653341889999998753349838997300232334365312343899999999998604899756267885216434
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 08833316564231410001347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~ 377 (647)
+|||||||+||+||+|++|+|+.++|..|+++|.+++..++||+++.||+.|.+|.||+...+|-||.+.|.|++...|+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~ 401 (424)
T KOG0652 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVT 401 (424)
T ss_pred CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCC
T ss_conf 34888864466444434889977898899988640057788879899853335667232133005540899864653012
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4568999750136
Q gi|254780545|r 378 MQEFEDAKDKILM 390 (647)
Q Consensus 378 ~~dl~~A~~rv~~ 390 (647)
.+||.+++..|.+
T Consensus 402 heDfmegI~eVqa 414 (424)
T KOG0652 402 HEDFMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7889999999998
No 23
>KOG0728 consensus
Probab=100.00 E-value=0 Score=460.79 Aligned_cols=251 Identities=42% Similarity=0.733 Sum_probs=244.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 124225698898528899999999987-4335676642012333110037874258889999742469970205857886
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
+..|+.|++=|+|+|....|++|+++. .|+|+.|..+|+--|||+||||||||||||||+|+|....+.|+.+|||+++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred HHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHH
T ss_conf 30783088875038889999999982656687899851878876048846999756299999875414079996449999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.+|.|+|+.-||+||-.||++||+|||.||||+||..|..+.+||..|-.+|+-+||-++|||+..+++-||.||||.|+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 99850138999999999875088267500001212343457898638999999999974024000366269984164222
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 88333165642314100013478899999998548877732110245441203798999999999876455320242104
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM 378 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~ 378 (647)
||||||||||.||+|++|.|+.++|.+||++|.+++.+...+|++.+|...+|-|||++..+|.||.++|.|+.+-.+|+
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 46866387754555648998778887899885553013306678999986789863025434335457888765200238
Q ss_pred HHHHHHHHHCCC
Q ss_conf 568999750136
Q gi|254780545|r 379 QEFEDAKDKILM 390 (647)
Q Consensus 379 ~dl~~A~~rv~~ 390 (647)
+||+-|+.+|+.
T Consensus 379 edfemav~kvm~ 390 (404)
T KOG0728 379 EDFEMAVAKVMQ 390 (404)
T ss_pred HHHHHHHHHHHH
T ss_conf 889999999972
No 24
>KOG0735 consensus
Probab=100.00 E-value=0 Score=461.48 Aligned_cols=228 Identities=41% Similarity=0.712 Sum_probs=218.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 4225698898528899999999987-433567664201233311003787425888999974246997020585788644
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
..+++|.||+|+.++|+-|+|++.+ -|.|.-|...+.+.+.|||||||||||||+||-|+|.++++.|+++.|+++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred CCCCCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHH
T ss_conf 67877100335899999999998554103678860886665545887799985788888888537805998258899998
Q ss_pred HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 42033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
|.|.++..||++|.+|+..+|||+|+||+|+++++||....|-.| +++|||||||||.++-.||+|+|||.|||.+|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTD---RVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD---RVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred HHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH---HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf 745007889999998651497489712102437666877777429---99999987603633445389997337834367
Q ss_pred HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 333165642314100013478899999998548877732110245441203798999999999876455320
Q gi|254780545|r 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN 372 (647)
Q Consensus 301 ~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~ 372 (647)
||||||||||+.+++++||..+|.+||++....+.++.++|++.+|..|.|||||||..++..|-+.|+++-
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 766288765401567998928999999998534577521016887652178736659989877799999999
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=0 Score=441.78 Aligned_cols=242 Identities=37% Similarity=0.649 Sum_probs=225.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
.+..+++||+||.|++++|...+-|+.||+||++|.+ ..||.|||||||||||||+|||+|+|+.+||+.+.+++++
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred HHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf 5661366176641639888887999999649687634---5754168778999648799998725457854871168888
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
..|||.|+.+||+||+.|++.||||+||||+||||-.|.-....| |.. -++|.|||||||...++||+.|||||+|+.
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG-DVs-EiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG-DVS-EIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCC-CHH-HHHHHHHHHCCCCCCCCCEEEEEECCCHHH
T ss_conf 877435989999999988751984998400245553045788645-499-999999985017445775699950598465
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHCCCCC
Q ss_conf 883331656423141000134788999999985488777321102454412037989999-9999987645532024210
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR-NLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~-~~~~eAa~~a~r~~~~~i~ 377 (647)
||||+.- ||+..|++-||+.++|.+|++.|++++|+.-+.+++.+|+.|.||||.||. .+++.|...|+++++..|+
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred CCHHHHH--HHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 0788886--55650656488858999999998985897655689999998478772068999999999999871344433
Q ss_pred HHHHHHHHHH
Q ss_conf 4568999750
Q gi|254780545|r 378 MQEFEDAKDK 387 (647)
Q Consensus 378 ~~dl~~A~~r 387 (647)
.+||+.|+.+
T Consensus 345 ~edie~al~k 354 (368)
T COG1223 345 REDIEKALKK 354 (368)
T ss_pred HHHHHHHHHH
T ss_conf 8899999986
No 26
>pfam01434 Peptidase_M41 Peptidase family M41.
Probab=100.00 E-value=0 Score=430.16 Aligned_cols=192 Identities=51% Similarity=0.769 Sum_probs=188.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66686677899999999999998505877323432201455564056400244322689999999999987898888861
Q gi|254780545|r 397 TAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF 476 (647)
Q Consensus 397 ~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f 476 (647)
++||++||++|||||||||||+|++++++||+||||+|||++||||++.|.+|++++||.+|+++|+|+|||||||+++|
T Consensus 1 r~ls~~ek~~vA~HEaGHAlva~~l~~~~~v~kvtI~prg~alG~t~~~p~ed~~~~tk~~l~~~I~v~LgGraAEei~f 80 (192)
T pfam01434 1 RVISEEEKRLVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIF 80 (192)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998999999999999999999846999821799862788763578657301121589999999999863899999981
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36875652335589999999999862488876673340478767434565677678788999999999999999999999
Q gi|254780545|r 477 GEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKA 556 (647)
Q Consensus 477 G~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~~~~~~~lg~~~~~~~~~s~~t~~~Id~Ev~~il~~ay~~a 556 (647)
|.+++||||++||++||+||+.||++||||+++||++|....+..|+++.+...+++|++++..||.||++||++||++|
T Consensus 81 G~~~vttGa~~DL~~At~lA~~mV~~~GMs~~lG~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~~~~~a 160 (192)
T pfam01434 81 GDDEVTTGASNDLEQATKIARQMVTEFGMSDKLGPVSLEDSDGGVFLGRGMGSRKEYSEETADIIDEEVRRLLEEAYERA 160 (192)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89987767152299999999999998288776787210367775435556555552239999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999989999999999988854999999999
Q gi|254780545|r 557 KSIIQEKNDNFVAIAEALLEYETLSGKEIASL 588 (647)
Q Consensus 557 ~~iL~~n~~~l~~la~~Lle~EtL~~~ei~~i 588 (647)
++||++|++.|++||++|+++|||+++||++|
T Consensus 161 ~~iL~~n~~~l~~la~~Lle~etL~g~ei~~I 192 (192)
T pfam01434 161 KEILTENRDELDALAEALLEKETLDAEEFREL 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHC
T ss_conf 99999949999999999998251679999559
No 27
>KOG0737 consensus
Probab=100.00 E-value=0 Score=408.96 Aligned_cols=250 Identities=34% Similarity=0.520 Sum_probs=217.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 000112422569889852889999999998-743356766420-123331100378742588899997424699702058
Q gi|254780545|r 136 KLLSGNVGSVTFKDVAGVDEAKEDLQEIVD-FLCDPQKFKRLG-GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS 213 (647)
Q Consensus 136 k~~~~~~~~v~f~dv~g~~~~k~~~~~~v~-~l~~~~~~~~~g-~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~ 213 (647)
..+.+.+.+|+|+||+|+|++|++|+|.|- .|+.|+.|..-+ .+||+||||||||||||||||||+|.|+|.+|+.++
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred CCCCHHHCEEEHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 20142232020241335289999999877520124666414531468643051189982188999999987279710001
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--EEEEE
Q ss_conf 5788644420332459999999987378012063235641445578988626889889989985303235778--29999
Q gi|254780545|r 214 GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG--VILIA 291 (647)
Q Consensus 214 ~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~--v~vi~ 291 (647)
+|.+.++|.|++.+-++.+|-.|.+.+||||||||+|+.-+.|++ +.|.-....-|||....||+.++.+ |+|+|
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 365532667778889999982065348615656658889864046---42799999999999986164678871599970
Q ss_pred ECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 62981008833316564231410001347889999999854887773211024544120379899999999987645532
Q gi|254780545|r 292 ATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 292 aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
|||||..||.|++| |+-++++|++|+.+.|.+||++.+++-++++++|+..+|+.|.||||.||.++|..|++..+|.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCCCCCHHHHHHH--HCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 79998437899998--4764365379844449999999942434687769888887608986778999999876768999
Q ss_pred HCCC-CCHHHHHHHHHHCCC
Q ss_conf 0242-104568999750136
Q gi|254780545|r 372 NRRL-VTMQEFEDAKDKILM 390 (647)
Q Consensus 372 ~~~~-i~~~dl~~A~~rv~~ 390 (647)
=-.. ....|.+.++.....
T Consensus 315 ~~~~~~~~~d~d~~~~d~~~ 334 (386)
T KOG0737 315 LLVSETGLLDLDKAIADLKP 334 (386)
T ss_pred HHHHCCCCCHHHHHHHHCCC
T ss_conf 99851351016666530357
No 28
>KOG0739 consensus
Probab=100.00 E-value=0 Score=413.42 Aligned_cols=230 Identities=37% Similarity=0.619 Sum_probs=206.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 11242256988985288999999999-87433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIV-DFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v-~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
.-++|+|+|+||||++.+|+.|+|.| -.+|.|..|+- +-+|.+|+||||||||||+.||||+|.||+..||++|.|++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred HCCCCCCCHHHHCCCHHHHHHHHHHEEECCCCHHHHCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 00389976233014056899987543500025354158-87754257886799975779999987414770687301788
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323-57782999962981
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRP 296 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~ 296 (647)
+++|.|++++-|++||+.||+++|+||||||||++|..|+.+-. +-..++-.+||++|.|.. .++||+|+||||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 99873217999999999987349947986344443268877711---777777778887640666588864897237884
Q ss_pred CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00883331656423141000134788999999985488777-3211024544120379899999999987645532024
Q gi|254780545|r 297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR 374 (647)
Q Consensus 297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~ 374 (647)
+.||.|+.| ||+++|||+||+..+|..+|++|+-+.|+. .+-|+..|++.|.||||+||.-+|+.|.+.-+|+-..
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred HHHHHHHHH--HHHCCEECCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 367799998--76502301087378765550320478864133566999976437877675477866644235887510
No 29
>KOG0651 consensus
Probab=100.00 E-value=0 Score=409.33 Aligned_cols=246 Identities=41% Similarity=0.679 Sum_probs=233.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 225698898528899999999987-4335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
-+++|+.|+|.-+.-.+++|+|.. |++|+.|.++|++||+|+||||||||||||+|+|+|...|++|+.++.|++++.|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred CCCCHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 54678771783888899886557402481002345777882568767999864599999998659854774476663300
Q ss_pred HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 20332459999999987378012063235641445578988626889889989985303235778299996298100883
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA 301 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~ 301 (647)
.|+.+.-||+.|..|+...|||||+|||||+|.+|-+.....+.|-.+||..||.+||||+....|-+|.|||+||.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCH
T ss_conf 26578899999977865275577510123114577335552059999999999874214012066317985388665665
Q ss_pred HHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 33165642314100013478899999998548877732110245441203798999999999876455320242104568
Q gi|254780545|r 302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEF 381 (647)
Q Consensus 302 al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl 381 (647)
||+||||+||.|++|+|+..+|..|+++|...+..-..+|.+.+.+.+.||.|||+.|+|.||.+.|++..+..+-++|+
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred HHCCCCCCCCEECCCCCCHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 54287521110026885544240267623541133455458999988741570877621234651103034677768889
Q ss_pred HHHHHHC
Q ss_conf 9997501
Q gi|254780545|r 382 EDAKDKI 388 (647)
Q Consensus 382 ~~A~~rv 388 (647)
..++.++
T Consensus 367 ~k~vrk~ 373 (388)
T KOG0651 367 MKLVRKQ 373 (388)
T ss_pred HHHHHHH
T ss_conf 9999999
No 30
>KOG0732 consensus
Probab=100.00 E-value=0 Score=396.99 Aligned_cols=250 Identities=40% Similarity=0.646 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCH
Q ss_conf 24225698898528899999999987-433567664201233311003787425888999974246-----997020585
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISG 214 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~ 214 (647)
.+..+.|+||||+++++..|+|+|.+ |-.|+.|..+++.||||+||+|||||||||.|+|+|..| .+.||.-.|
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf 21036863334578889999998876764056764126689863230289987256888866654054110202443148
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
++..++|||+.+...|.||+.|++..|+|||+||||.+++.|++... ..+.+++..||.-|||+++...|+||||||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE---qih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE---QIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred CHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 44332544757788998898874448517730555664656536677---744567777887604777778658971567
Q ss_pred CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 81008833316564231410001347889999999854887--7732110245441203798999999999876455320
Q gi|254780545|r 295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN 372 (647)
Q Consensus 295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~ 372 (647)
||+.+||||.|||||||.+++++||.++|.+|+.+|.++-. +.. .-+..+|..|.||.||||..+|.|||+.++|+.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~-~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR-ELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8332465442886665257503786678889998751577788777-899999886234005789988888755430456
Q ss_pred C----------------CCCCHHHHHHHHHHCCCCCCC
Q ss_conf 2----------------421045689997501368655
Q gi|254780545|r 373 R----------------RLVTMQEFEDAKDKILMGAER 394 (647)
Q Consensus 373 ~----------------~~i~~~dl~~A~~rv~~G~ek 394 (647)
- ..|...||..|+.|+.--..+
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 58142224321345011100267666543003777775
No 31
>KOG0730 consensus
Probab=100.00 E-value=0 Score=383.57 Aligned_cols=238 Identities=41% Similarity=0.638 Sum_probs=223.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 4225698898528899999999987-433567664201233311003787425888999974246997020585788644
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
.+.++ +|++|+...-.-+++.|.+ |++|..|...|.++|+|+|||||||||||++++|+|+|+++-||.++|+++++.
T Consensus 179 ~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k 257 (693)
T KOG0730 179 LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK 257 (693)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 14445-55413667788889988743016011443189999874443899998189999999973722574062899985
Q ss_pred HHHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 42033245999999998737-80120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
|.|++++++|..|++|.+++ |+||||||||+++++|..... -| .++..|||+.|||......||||+|||||+.|
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e-~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VE-SRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCH---HH-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 246317789999999866599807758767623776433324---88-89999999998527676746999715885556
Q ss_pred CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 83331656423141000134788999999985488777321102454412037989999999998764553202421045
Q gi|254780545|r 300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQ 379 (647)
Q Consensus 300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~ 379 (647)
|||+.| ||||+.++|+.|+..+|.+|+++|++++++.+++++..+|..|+||+||||+.+|++|++.+.|+ +++
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~ 407 (693)
T KOG0730 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLE 407 (693)
T ss_pred CHHHHC-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_conf 856524-78853157448983358899999986168872556899998734614787999999987776655-----577
Q ss_pred HHHHHHHHCCC
Q ss_conf 68999750136
Q gi|254780545|r 380 EFEDAKDKILM 390 (647)
Q Consensus 380 dl~~A~~rv~~ 390 (647)
+|..|...+.-
T Consensus 408 ~~~~A~~~i~p 418 (693)
T KOG0730 408 IFQEALMGIRP 418 (693)
T ss_pred HHHHHHHCCCC
T ss_conf 78998706870
No 32
>KOG0741 consensus
Probab=100.00 E-value=0 Score=379.99 Aligned_cols=298 Identities=33% Similarity=0.528 Sum_probs=228.6
Q ss_pred CCCCCCCCC--CCCCHHHHHH--HHHHHHHHHHH-HH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 632100001--1242256988--98528899999-99-998743356766420123331100378742588899997424
Q gi|254780545|r 131 GKSKAKLLS--GNVGSVTFKD--VAGVDEAKEDL-QE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 131 GKSkAk~~~--~~~~~v~f~d--v~g~~~~k~~~-~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
|||+.|... --.|+-.|.+ |+|+|..-..+ +. ...-+=.|+-..++|.+--||+||||||||||||+||-+..=
T Consensus 200 ~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkM 279 (744)
T KOG0741 200 GKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKM 279 (744)
T ss_pred CCCCCCCHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 36667722112318998714326665117899999998776329988998719511235788779998701899998787
Q ss_pred CCC-CEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 699-70205857886444203324599999999873--------780120632356414455789886268898899899
Q gi|254780545|r 205 ANV-PFFTISGSDFVELFVGVGASRVRDMFEQAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLL 275 (647)
Q Consensus 205 ~~~-~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll 275 (647)
.+. +=--+.|+++.++|||+++++||+||+.|.+- .--||.+||||||+++||+..+ +...+++++||||
T Consensus 280 LNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLL 358 (744)
T KOG0741 280 LNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLL 358 (744)
T ss_pred HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCC-CCCCCHHHHHHHH
T ss_conf 457998634757889876063078899998757999984376677259996346799974488789-8863189999999
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHC
Q ss_conf 853032357782999962981008833316564231410001347889999999854887----7732110245441203
Q gi|254780545|r 276 VEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPG 351 (647)
Q Consensus 276 ~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g 351 (647)
+-|||.+.-.+|+|||-|||.|++|+||||||||+-+.+|.|||.++|.+||++|++++. +++|||+++||.+|..
T Consensus 359 sKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN 438 (744)
T KOG0741 359 SKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN 438 (744)
T ss_pred HHCCCHHHHHCEEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf 85322876616789940473666788755887169999984688767278887144556651787777698999998557
Q ss_pred CCHHHHHHHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH------------
Q ss_conf 798999999999876455320---------------24210456899975013686556766686677------------
Q gi|254780545|r 352 FSGADLRNLVNEAALMAARRN---------------RRLVTMQEFEDAKDKILMGAERRSTAMTEEEK------------ 404 (647)
Q Consensus 352 ~sgAdi~~~~~eAa~~a~r~~---------------~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek------------ 404 (647)
||||+|+.||+-|.-.|..+. .-.|++.||..|++.|. ..--.++++.
T Consensus 439 fSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk-----PAFG~see~l~~~~~~Gmi~~g 513 (744)
T KOG0741 439 FSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK-----PAFGISEEDLERFVMNGMINWG 513 (744)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHEEECHHHHHHHHHHCC-----CCCCCCHHHHHHHHHCCCEEEC
T ss_conf 86267899999888898886613686311271114320202887898987357-----5448788999999857854516
Q ss_pred -HHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf -8999999999999985058773234322014
Q gi|254780545|r 405 -KITAYHEAGHAVVACHVPKADPLHKATIIPR 435 (647)
Q Consensus 405 -~~vAyHEAGHAlva~~l~~~~~v~kVTIipR 435 (647)
+.+-+.+-|.-+|... +..+.-.-||.+-.
T Consensus 514 ~~v~~il~~G~llv~qv-k~s~~s~lvSvLl~ 544 (744)
T KOG0741 514 PPVTRILDDGKLLVQQV-KNSERSPLVSVLLE 544 (744)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCCCCCEEEEEE
T ss_conf 30778876688999986-33466763589986
No 33
>KOG0740 consensus
Probab=100.00 E-value=1.4e-45 Score=347.78 Aligned_cols=245 Identities=34% Similarity=0.564 Sum_probs=211.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
......|.|+|++|++.+|+-+.|.|-| +..|+.|..+ ..+++|+||.||||||||||++|||.|+++.||++|+|++
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC-CCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 602775413577405668998654232204553765235-4453111200589884479999998620665763068886
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECCC
Q ss_conf 644420332459999999987378012063235641445578988626889889989985303235--778299996298
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--SEGVILIAATNR 295 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--~~~v~vi~aTn~ 295 (647)
.++|+|.+++-||.||.-||...|+||||||||.+-.+|..+ .|+-..+...++|.++||... ++.|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 532467077899999999871397089840256788636875---45445556557776540445788870799815888
Q ss_pred CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 100883331656423141000134788999999985488777-3211024544120379899999999987645532024
Q gi|254780545|r 296 PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR 374 (647)
Q Consensus 296 ~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~ 374 (647)
|+.+|.|++| ||-++++|++||.++|..||+..+++-+.. .+.|++.+|+.|.||||.||.++|.||++--.|....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred CHHHHHHHHH--HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCC
T ss_conf 3677888888--71031553598878999999999976878741778999998861756221889987762384544012
Q ss_pred -------------CCCHHHHHHHHHHCC
Q ss_conf -------------210456899975013
Q gi|254780545|r 375 -------------LVTMQEFEDAKDKIL 389 (647)
Q Consensus 375 -------------~i~~~dl~~A~~rv~ 389 (647)
.|+..||..|...+.
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740 378 TTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 0114422300258988626899887403
No 34
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.5e-32 Score=249.50 Aligned_cols=257 Identities=43% Similarity=0.640 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf 43356766420123331100378742588899997424699702058578864442033245999999998737801206
Q gi|254780545|r 167 LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFV 246 (647)
Q Consensus 167 l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifi 246 (647)
++.|+.|+.+|..+|+|++++||||||||++|+++|.+ +..++.+++++..++|+|....+.|.+|+.|+..+|||+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 52479998706676421000368876503665676512-54101356522432220510899999989998639763640
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHH
Q ss_conf 32356414455789886268898899899853032357782999962981008833316564231410001347889999
Q gi|254780545|r 247 DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHI 326 (647)
Q Consensus 247 Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i 326 (647)
||+|++.++|.... + ....+.+++|+..||++.... |+++++||+++.+|+|+.||||||+.+++..|+...|.+|
T Consensus 83 d~~~~~~~~~~~~~-~--~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i 158 (494)
T COG0464 83 DEIDALAPKRSSDQ-G--EVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred CCCCCCCCCCCCCC-C--HHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCHHHHHHCCHHHHHHHHHCCCCHHCCHHH
T ss_conf 44332123444442-1--045789998998764246563-4674134453211277753137678876336541014246
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHHHCCC----CCCCCC
Q ss_conf 9998548877732110245441203798999999999876455320------242104568999750136----865567
Q gi|254780545|r 327 LMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN------RRLVTMQEFEDAKDKILM----GAERRS 396 (647)
Q Consensus 327 ~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~------~~~i~~~dl~~A~~rv~~----G~ek~~ 396 (647)
++.|.+.+++.++.+++.+|..+.|++|||+..+|.++++.++++. ...++..++.+++.++.- ..+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED 238 (494)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 51011101257864278899873232132488774178888875002333033202199999999861245563003688
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 666866778999999999999985058773234
Q gi|254780545|r 397 TAMTEEEKKITAYHEAGHAVVACHVPKADPLHK 429 (647)
Q Consensus 397 ~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~k 429 (647)
....+. --.--..+.++-.+.+.+...+-..+
T Consensus 239 v~~~di-ggl~~~k~~l~e~v~~~~~~~e~~~~ 270 (494)
T COG0464 239 VTLDDI-GGLEEAKEELKEAIETPLKRPELFRK 270 (494)
T ss_pred CEEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 514532-36377999999999999970887632
No 35
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.97 E-value=5.2e-32 Score=250.62 Aligned_cols=130 Identities=58% Similarity=0.931 Sum_probs=118.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
+|||||||||||++|+|+|.+++.||+.++++++...|+|.++.+++++|+.|++.+||||||||+|+++++|.....+
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~~~~~- 79 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDS- 79 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCCC-
T ss_conf 9878999999999999999997898533242012223345068889999999997499189831167775167888887-
Q ss_pred CHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf 26889889989985303235-7782999962981008833316564231410001
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFES-SEGVILIAATNRPDVLDAALLRPGRFDRQITVPN 317 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~-~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~ 317 (647)
....++++||.+||++.. ..+|++||+||+|+.||||++| ||||++|++++
T Consensus 80 --~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld~al~r-~Rfd~~i~~pl 131 (131)
T pfam00004 80 --ESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLR-GRFDRIIEFPL 131 (131)
T ss_pred --CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHC-CCCEEEEEECC
T ss_conf --51326878999985022468876999975990449977962-83328998069
No 36
>KOG0743 consensus
Probab=99.93 E-value=1.8e-25 Score=203.32 Aligned_cols=277 Identities=22% Similarity=0.258 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 89999999999999999999999851---677887776766-321000011242256988985288999999-9998743
Q gi|254780545|r 94 GLLSYLGSWFPLVLVVLVWMFLMRQI---QGGGARGAMGFG-KSKAKLLSGNVGSVTFKDVAGVDEAKEDLQ-EIVDFLC 168 (647)
Q Consensus 94 ~~~~iL~~~LPliLli~i~~fl~rr~---~gGg~~~~msfG-KSkAk~~~~~~~~v~f~dv~g~~~~k~~~~-~~v~~l~ 168 (647)
.+-.++.++|+.+.-.+-=+--.++. ....++..+.-. .++=+-+.-+.| -||+-+|=-.+.|+++. ++.+|++
T Consensus 144 ~~e~V~~syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k 222 (457)
T KOG0743 144 PRELVTLSYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHP-STFETLAMDPDLKERIIDDLDDFIK 222 (457)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 277767867888999999999988987776158875112435776125689999-8744201486678999999999972
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf 35676642012333110037874258889999742469970205857886444203324599999999873780120632
Q gi|254780545|r 169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 169 ~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe 248 (647)
..+-|.+.|.-.-||-|||||||||||-+--|+|++.+-..+-..-++. +.. +-+|.|.-.+.. -|||.|.+
T Consensus 223 ~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~~n-~dLr~LL~~t~~--kSIivIED 294 (457)
T KOG0743 223 GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----KLD-SDLRHLLLATPN--KSILLIED 294 (457)
T ss_pred CCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCC-----CCC-HHHHHHHHHCCC--CCEEEEEE
T ss_conf 2357886484500041204799998889999997205873677440023-----683-899999972899--71899961
Q ss_pred HHHHHC--CCCCC-CCCCC-HHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf 356414--45578-98862-688988998998530323577--8299996298100883331656423141000134788
Q gi|254780545|r 249 IDAVGR--HRGIG-LGGGN-DEREQTLNQLLVEMDGFESSE--GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVG 322 (647)
Q Consensus 249 ida~~~--~r~~~-~~~~~-~e~~~~ln~ll~~mdg~~~~~--~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~ 322 (647)
||+=.. .|... ..+.+ +...-||..||-.+||.-++. --|+|-+||++|.|||||+||||.|.||+++.-+..+
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCHHHCCCCCCEEEEECCCCCHHH
T ss_conf 24323044345556645467766066477566413430048873499994687100688662887522566726698799
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999998548877732110245441203--798999999999876455320242104568999750
Q gi|254780545|r 323 REHILMVHSRNVPLAPNVILKTIARGTPG--FSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDK 387 (647)
Q Consensus 323 r~~i~~~~~~~~~~~~~~d~~~la~~t~g--~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~r 387 (647)
-+..++-|+.-.- +..-++++.+.-.+ .|+||++... ..-++ ...+..+.+.+++..
T Consensus 375 fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l-----m~~~~-dad~~lk~Lv~~l~~ 433 (457)
T KOG0743 375 FKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL-----MKNKN-DADVALKGLVEALES 433 (457)
T ss_pred HHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHH-----HHCCC-CHHHHHHHHHHHHHH
T ss_conf 9999998338988--73067999987633746899999998-----63565-388999999999876
No 37
>KOG0742 consensus
Probab=99.93 E-value=7.7e-25 Score=198.73 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 42256988985288999999999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
.++--|.||.=....+..+..+-.--.|.++ .--|-|.|||||||||||||+||-+|...|..+--+.|-|+--+
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHCCCCC----CCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCC-
T ss_conf 5777767841277799999999887404300----24304400324799986049999998852874100137875552-
Q ss_pred HHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 2033245999999998737-801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
.-.+-.+|+.||+-|++.. .-++||||.||+-..|+...++ .+ ...+||.||--- | +.+..++++-|||+|..||
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymS-Ea-qRsaLNAlLfRT-G-dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS-EA-QRSALNALLFRT-G-DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHC-C-CCCCCEEEEEECCCCCCHH
T ss_conf 178899999987887515664499861167899875201025-88-999998898762-5-6554268996058832101
Q ss_pred HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC---C---------------------CCCC---CCHHHHHHHHHCCC
Q ss_conf 3331656423141000134788999999985488---7---------------------7732---11024544120379
Q gi|254780545|r 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNV---P---------------------LAPN---VILKTIARGTPGFS 353 (647)
Q Consensus 301 ~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~---~---------------------~~~~---~d~~~la~~t~g~s 353 (647)
.|+-- |||..|+++||..++|..+|..|+.+- | +..+ --+...|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHH--HHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 67876--5554130689977899999999999981477777897215577764401554434318889999998606875
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999876455320
Q gi|254780545|r 354 GADLRNLVNEAALMAARRN 372 (647)
Q Consensus 354 gAdi~~~~~eAa~~a~r~~ 372 (647)
|.+|+.|+ |...|+-.+
T Consensus 578 GREiakLv--a~vQAavYg 594 (630)
T KOG0742 578 GREIAKLV--ASVQAAVYG 594 (630)
T ss_pred HHHHHHHH--HHHHHHHHC
T ss_conf 78999999--998898850
No 38
>CHL00026 ycf2 Ycf2
Probab=99.92 E-value=3.9e-24 Score=193.62 Aligned_cols=309 Identities=22% Similarity=0.297 Sum_probs=219.9
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH---------------------------------
Q ss_conf 42012333110037874258889999742469970205857886444---------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF--------------------------------- 221 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~--------------------------------- 221 (647)
++|..||||+||.||.|||...|.|-+|...-|||+.++-..|..-.
T Consensus 1624 ~LglspSkGILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~nkp~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 1703 (2286)
T CHL00026 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELEL 1703 (2286)
T ss_pred ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 11678767527978876666899998774263740896389984138643455543332233322210010000001120
Q ss_pred ----------HHCCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CC--CCCC
Q ss_conf ----------2033245--9999999987378012063235641445578988626889889989985303-23--5778
Q gi|254780545|r 222 ----------VGVGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-FE--SSEG 286 (647)
Q Consensus 222 ----------~g~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~~--~~~~ 286 (647)
....-.+ +--.|+.|++.+||||+|..|..+-..... . -.|.-|+..|.+ ++ ...+
T Consensus 1704 ~t~~~~~~~~~~~~i~~~~i~LqFELAk~MSPCIIWIpnIHeLnvnd~~------~---l~LglL~n~ls~d~e~~strN 1774 (2286)
T CHL00026 1704 LTMMNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESN------Y---LSLGLLVNYLSRDCERCSTRN 1774 (2286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCC------H---HHHHHHHHHHCCCCCCCCCCC
T ss_conf 0000034443233334444578899987549807961767660567762------1---469999998425643345245
Q ss_pred EEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 299996298100883331656423141000134788999999985--48877732-110245441203798999999999
Q gi|254780545|r 287 VILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPN-VILKTIARGTPGFSGADLRNLVNE 363 (647)
Q Consensus 287 v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~-~d~~~la~~t~g~sgAdi~~~~~e 363 (647)
++|||.|.-|..+||||.-|-|||+.|.+.....--|++=|-+.+ ++..+..+ ..+......|.|++..||+.|.||
T Consensus 1775 ilVIASTHiPqKVDPALIaPNRLdt~IniR~l~ipQr~K~F~iLl~tkGF~lek~~f~~n~FGS~T~GynaRDL~aL~NE 1854 (2286)
T CHL00026 1775 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1854 (2286)
T ss_pred EEEEECCCCCCCCCHHHCCCCCHHHHEEEHCCCCHHHHHHHHHEEECCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 18997067877668110585302031120004666654144430003551112555554665640058877889998654
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH------HCCCC
Q ss_conf 876455320242104568999750136865567666866778999999999999985058773234322------01455
Q gi|254780545|r 364 AALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI------IPRGR 437 (647)
Q Consensus 364 Aa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI------ipRg~ 437 (647)
|.+..+-+++..|+...+.-|+-|..+|.....+...+ +-+-.+..|.||+...|-...|+.-+|| ..+|.
T Consensus 1855 aL~ISItq~KSiIdtnTIr~AlhRQtw~l~~~v~~~~~---~giLfYkIGkAviQN~Ll~n~~idPiSiy~~k~~~kk~~ 1931 (2286)
T CHL00026 1855 ALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQD---HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCNEGD 1931 (2286)
T ss_pred HHEEEEECCCCEEECCHHHHHHHHHHHHHCCCCCCCCC---CCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 63133304763540212889998887601334551355---655540464999999998438997068875143442465
Q ss_pred CCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHHH
Q ss_conf 564056400244322689999999999987898888861--36---87565--23355899999999
Q gi|254780545|r 438 ALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLAR 497 (647)
Q Consensus 438 alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA~ 497 (647)
.-=+-||+... ..+-+=.++-.|-.|+||-||-...| |. +.++. =+.||..-|-.+-.
T Consensus 1932 ~YLskWYlE~~--TtmKelTIL~yiL~ClAGsaArDsWsl~~~~~eN~I~~d~lvEND~dLa~glLE 1996 (2286)
T CHL00026 1932 SYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGFVENDSDLVHGLLE 1996 (2286)
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 05777663356--329999999999874421566652257898655674034320143798999998
No 39
>CHL00179 consensus
Probab=99.92 E-value=2.1e-24 Score=195.55 Aligned_cols=312 Identities=20% Similarity=0.259 Sum_probs=221.1
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH------------------------------------
Q ss_conf 42012333110037874258889999742469970205857886------------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV------------------------------------ 218 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~------------------------------------ 218 (647)
++|..|+||+||.||.|||...|.|-+|...=|||+.++-..|.
T Consensus 1594 ~L~lspSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ 1673 (2262)
T CHL00179 1594 RLALPPSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKFLDDNKGYLIDDIDIDDRDDIDIDDRDDIDDDLDTELL 1673 (2262)
T ss_pred ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 02778767627978776666899988764253751895177763358654456444443322344431111100344441
Q ss_pred ------HHHHHCCHH--HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCE
Q ss_conf ------444203324--599999999873780120632356414455789886268898899899853032---357782
Q gi|254780545|r 219 ------ELFVGVGAS--RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF---ESSEGV 287 (647)
Q Consensus 219 ------~~~~g~g~~--~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~---~~~~~v 287 (647)
.|+...... ++--.|+.|++.+||||+|-.|.-+-.++.... .|.-||-.+.+- ....++
T Consensus 1674 t~~n~l~~~~~~~~~~f~itLqfELAk~MSPCIIWIPNIHdL~vNes~~l---------~LGlLln~ls~d~er~strNi 1744 (2262)
T CHL00179 1674 TMPNVLTMYMTPKIDQFEITLPLELAKAMSPCIIWIPNIHDLYVNESNYL---------SLGLLVNHLPRDCERCSTRNI 1744 (2262)
T ss_pred CCCCCHHHHHHHHHHHEEHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCH---------HHHHHHHHHCCCCCCCCCCCE
T ss_conf 26530025654222440017989999864983797075332256754403---------589999873244200243454
Q ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99996298100883331656423141000134788999999985--48877732-1102454412037989999999998
Q gi|254780545|r 288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPN-VILKTIARGTPGFSGADLRNLVNEA 364 (647)
Q Consensus 288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~-~d~~~la~~t~g~sgAdi~~~~~eA 364 (647)
+|||.|.-|..+||||+-|-|+|+.|.+.....-.|++=|-+.+ ++.-+..+ ..+......|.|++..||+.|.|||
T Consensus 1745 lVIASTHIPqKVDPaLIaPNRLdt~InIRrLlipQrrK~F~iLl~tkGF~lekk~~~~n~FGSiTmG~naRDL~aL~NEa 1824 (2262)
T CHL00179 1745 LVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRKHFFILSYTRGFRLEKKMSHTNGFGSITMGSNARDLVALTNEV 1824 (2262)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHEEECCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 89962788876780004865334236642036666530333123035522214455657766510588688899986546
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--H----CCCCC
Q ss_conf 76455320242104568999750136865567666866778999999999999985058773234322--0----14555
Q gi|254780545|r 365 ALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--I----PRGRA 438 (647)
Q Consensus 365 a~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--i----pRg~a 438 (647)
....+-+++..|+...+.-|+-|..+|.. +.+-+-.. +-+-.+..|.||+...|-...|+.-+|| - .+|..
T Consensus 1825 LsISItqkKSiIdtnTIR~ALhRQtw~l~--sqv~~~q~-~giLfYqIGkAV~QN~Ll~n~~idPiSiymkkk~~k~~~s 1901 (2262)
T CHL00179 1825 LSISITQKKSIIDTNTIRSALHRQTWDLR--SQVRSVQD-HEILFYQIGRAVAQNVLLSNCSIDPISIYMKKKSCKEGDS 1901 (2262)
T ss_pred HEEEEECCCCEEECCHHHHHHHHHHHHHC--CCCCCCCC-CCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 21333136524401038899888775101--33551356-7666401519999999985389971888864421355660
Q ss_pred CCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf 64056400244322689999999999987898888861--36---87565--23355899999999998
Q gi|254780545|r 439 LGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLARVMV 500 (647)
Q Consensus 439 lG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA~~mV 500 (647)
-=+-||.... ..+-+=.++-.|..|+||-||-...+ |. +.++. =+.||..-|..+--...
T Consensus 1902 YLskWYlElg--TsmKelTIL~yiL~ClAGsaAqDsWsi~gp~~eN~I~~d~~vEnDsdLa~gLLE~~L 1968 (2262)
T CHL00179 1902 YLSKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSPPGPDEKNWITSYGFVENDSDLVHGLLESAL 1968 (2262)
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4676664166--238999999999860000567652368898655674334310032688999888776
No 40
>CHL00178 consensus
Probab=99.91 E-value=7.3e-24 Score=191.66 Aligned_cols=308 Identities=21% Similarity=0.284 Sum_probs=216.1
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH---------------------------------
Q ss_conf 42012333110037874258889999742469970205857886444---------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF--------------------------------- 221 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~--------------------------------- 221 (647)
++|..|+||+||.||.|||...|.|-+|...=|||+.++-..|....
T Consensus 1452 rL~lspSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~L~nkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1531 (2133)
T CHL00178 1452 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPEGFLIDDIDIDASDDIDASDDIDASDDIDASD 1531 (2133)
T ss_pred ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02777667637978776666899988764253751895078873458766645534432100123211123332322222
Q ss_pred ----------------HHCCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf ----------------2033245--99999999873780120632356414455789886268898899899853032--
Q gi|254780545|r 222 ----------------VGVGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF-- 281 (647)
Q Consensus 222 ----------------~g~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~-- 281 (647)
....-.| +--.|+.|++.+||||+|..|..+-.++... -.|.-||-.+.+-
T Consensus 1532 d~~~~~~t~~~~~~~d~~~~i~rf~itLqFELAK~MSPCIIWIPNIHeLnvnes~~---------~~LglLln~Ls~d~e 1602 (2133)
T CHL00178 1532 DIDRDLHTELELLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNY---------FSLGLLVNHLSRDCE 1602 (2133)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCH---------HHHHHHHHHHCCCCC
T ss_conf 10000000013456544444455656888999875498279717654335675531---------579999987424320
Q ss_pred -CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH--HCCCCCCCC-CCHHHHHHHHHCCCHHHH
Q ss_conf -3577829999629810088333165642314100013478899999998--548877732-110245441203798999
Q gi|254780545|r 282 -ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH--SRNVPLAPN-VILKTIARGTPGFSGADL 357 (647)
Q Consensus 282 -~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~--~~~~~~~~~-~d~~~la~~t~g~sgAdi 357 (647)
....+++|||.|.-|..+||||+-|-|||+.|.+.....--|++=|-+. .++.-+..+ ..+......|.|++..||
T Consensus 1603 r~StrNilVIASTHIPqKVDPALIaPNRLdt~InIRrLlIpQrrK~F~iLl~tkGF~leKkmf~~n~FGSiTmGynaRDL 1682 (2133)
T CHL00178 1603 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFRLEKKMFHTNGFGSITMGSNARDL 1682 (2133)
T ss_pred CCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEEEECCCHHHHHHHHEEEECCCCEECCCCCCCCCCCCEECCCCHHHH
T ss_conf 02424548996278887678100586422302554203666653023303303552012445565776651058868889
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HC-
Q ss_conf 999999876455320242104568999750136865567666866778999999999999985058773234322--01-
Q gi|254780545|r 358 RNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--IP- 434 (647)
Q Consensus 358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--ip- 434 (647)
+.|.|||....+-+++..|+...+.-|+-|..+|.+ +++-+-.. +-+-.+..|.||+...|-...|+.-+|| -.
T Consensus 1683 ~aL~NEaLsISItqkKSiIDTnTIR~ALhRQtw~l~--sqv~~~q~-hgiLfYkIGkAViQN~Ll~n~~idPiSiY~kKk 1759 (2133)
T CHL00178 1683 VALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLR--SQVRSVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYIKKK 1759 (2133)
T ss_pred HHHHHHHHEEEEECCCCEEECCHHHHHHHHHHHCCC--CCCCCCCC-CCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 998654611343136524401038899888765200--11461456-766764140999999998539997178886430
Q ss_pred ---CCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHH
Q ss_conf ---455564056400244322689999999999987898888861--36---87565--2335589999999
Q gi|254780545|r 435 ---RGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLA 496 (647)
Q Consensus 435 ---Rg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA 496 (647)
.|..-=+-||+... ..+-+=.++-.|-.|+||-||-...+ |. +.|+. =+.||..-|-.+-
T Consensus 1760 ~~k~~~~YLskWYlElg--TsmKelTIL~yIL~ClAGSaAqDsWsl~epn~eN~I~~d~lvENDsdLv~glL 1829 (2133)
T CHL00178 1760 SCNEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLL 1829 (2133)
T ss_pred CCCCCCCHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 15556724666554166--24899999999975012256765236889865567313442126458888898
No 41
>KOG0736 consensus
Probab=99.90 E-value=1.3e-22 Score=182.51 Aligned_cols=229 Identities=30% Similarity=0.454 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 99987433567664201233311003787425888999974246997020585788644420332459999999987378
Q gi|254780545|r 162 EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSP 241 (647)
Q Consensus 162 ~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p 241 (647)
+.+++|.-+..-...+.+.---+||+||||||||.+.+++|.+.|.++|.+++.+++.---+-.+.+....|.+||...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99998486558530013355379986799987579999999983872570138988643633137899999998752686
Q ss_pred HHEEHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHH
Q ss_conf 012063235641445578988626889-88998998530323-5778299996298100883331656423141000134
Q gi|254780545|r 242 CIVFVDEIDAVGRHRGIGLGGGNDERE-QTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD 319 (647)
Q Consensus 242 ~iifiDeida~~~~r~~~~~~~~~e~~-~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~ 319 (647)
||||+-.+|.++..+.. +.|-|- +.++++|. .|-|. ...+++|+|+|+..+.+.+-+.+ -|=..|.++.|+
T Consensus 492 avifl~~~dvl~id~dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736 492 AVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred EEEEEECCCEEEECCCC----CHHHHHHHHHHHHHH-CCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHHHHCCCCCCC
T ss_conf 28987224245533777----442779999999972-02356779965999962530239878987--526521377888
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHHHC-----------------CCCCHH
Q ss_conf 7889999999854887773211024544120379899999999987645---53202-----------------421045
Q gi|254780545|r 320 IVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA---ARRNR-----------------RLVTMQ 379 (647)
Q Consensus 320 ~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a---~r~~~-----------------~~i~~~ 379 (647)
.+.|.+||+.|+...+++.++.+..+|++|.|||-+|++.++..+.+.+ +.+.. ..++++
T Consensus 565 e~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~e 644 (953)
T KOG0736 565 EEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEE 644 (953)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEECHH
T ss_conf 78899999999830652357787899986589877779977147518889999752014431110245401246410198
Q ss_pred HHHHHHHHC------CCCCCCCCC
Q ss_conf 689997501------368655676
Q gi|254780545|r 380 EFEDAKDKI------LMGAERRST 397 (647)
Q Consensus 380 dl~~A~~rv------~~G~ek~~~ 397 (647)
||..|++|. -.|.+|-..
T Consensus 645 df~kals~~~~~fs~aiGAPKIPn 668 (953)
T KOG0736 645 DFDKALSRLQKEFSDAIGAPKIPN 668 (953)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 888898898886555307988896
No 42
>KOG0744 consensus
Probab=99.86 E-value=1e-20 Score=168.87 Aligned_cols=236 Identities=23% Similarity=0.287 Sum_probs=165.8
Q ss_pred CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCC-------
Q ss_conf 2256988985----288999999999874335676642012-----333110037874258889999742469-------
Q gi|254780545|r 143 GSVTFKDVAG----VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEAN------- 206 (647)
Q Consensus 143 ~~v~f~dv~g----~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~------- 206 (647)
|.+.|+-.+- --+.|++|...+. ..-+|.+.+.. .-|=+||+||||||||-|.||+|....
T Consensus 133 Pa~eF~glWEsLiyds~lK~~ll~Ya~---s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744 133 PAAEFDGLWESLIYDSNLKERLLSYAA---SALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
T ss_conf 511543057887641328999999999---99888761788744664148998579998822799999875146523764
Q ss_pred --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC---CHH--EEHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf --9702058578864442033245999999998737---801--20632356414455789886-268898899899853
Q gi|254780545|r 207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS---PCI--VFVDEIDAVGRHRGIGLGGG-NDEREQTLNQLLVEM 278 (647)
Q Consensus 207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~---p~i--ifiDeida~~~~r~~~~~~~-~~e~~~~ln~ll~~m 278 (647)
.-.+.++.-++.++|.+++.+.|-.+|++..+.. .|. +.|||..+++..|.+...+. -...-+++|.|||+|
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 44069997046788988712113899999999999717896899980787888999875413799821899999999989
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC--------CCC-----
Q ss_conf 032357782999962981008833316564231410001347889999999854887-----77--------321-----
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA--------PNV----- 340 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~--------~~~----- 340 (647)
|.+....+|+++++.|-.+.||-|+.- |-|-+.+|+.|...+|.+|++..+..+- +. ..+
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~ 367 (423)
T KOG0744 290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA 367 (423)
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
T ss_conf 986047977999626267777888611--754211038963999999999999999863843210000005677676676
Q ss_pred CHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 10245441-2037989999999998764553202421045689997
Q gi|254780545|r 341 ILKTIARG-TPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 341 d~~~la~~-t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
....++.. +.|.||.-|..+---| +|.--....|+.++|..|+
T Consensus 368 ~~~~~~~~~~~gLSGRtlrkLP~La--ha~y~~~~~v~~~~fl~al 411 (423)
T KOG0744 368 LRNILIELSTVGLSGRTLRKLPLLA--HAEYFRTFTVDLSNFLLAL 411 (423)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCCCCCCHHHHHHHH
T ss_conf 7899998864477620576515888--8740677864868999999
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.83 E-value=2.8e-20 Score=165.72 Aligned_cols=129 Identities=39% Similarity=0.516 Sum_probs=100.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHH---HHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 233311003787425888999974246---997020585788644420332459---99999998737801206323564
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRV---RDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~v---r~lf~~a~~~~p~iifiDeida~ 252 (647)
.+|+++||+||||||||++|+++|.++ +.+|+.++.+++.+.+.+.+..+. +..+..+....|||+||||||.+
T Consensus 17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf 79980899899998865999999997121379827854777046777757605778898999999769986982016655
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf 14455789886268898899899853032357782999962981008833316564231410001
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPN 317 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~ 317 (647)
.+. .....++.|...++.-....++.+|++||+++..|+..-+++|||.+|.+++
T Consensus 97 ~~~----------~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~~~~~~~~~~R~~~~i~~~~ 151 (151)
T cd00009 97 SRG----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CHH----------HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEECCC
T ss_conf 999----------9999999998715754067888999952899886837764255986986389
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=1.9e-18 Score=152.43 Aligned_cols=209 Identities=23% Similarity=0.346 Sum_probs=156.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEECCCCCHHHHHHHHHHHCC---CC----CCEECCCH
Q ss_conf 698-898528899999999987433567664201233---31100378742588899997424---69----97020585
Q gi|254780545|r 146 TFK-DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HGVLLVGPPGTGKTLLARAVAGE---AN----VPFFTISG 214 (647)
Q Consensus 146 ~f~-dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g~ll~GppGtGKTlla~a~a~e---~~----~~f~~~~~ 214 (647)
-.+ +..|++.+|+++.+++.+++--..-...|..++ ..++|.||||||||..||.+|.= .| -.|+.++.
T Consensus 20 eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r 99 (287)
T CHL00181 20 ELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTR 99 (287)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECH
T ss_conf 99886469699999999999999999999987999888765388878998679999999999999869955895899535
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
++|+..|+|.++.+.+++++.|+ ..|+||||.-++....+ .+|-....++.|+..|+. ..+.++||.|--
T Consensus 100 ~dLvg~yvG~Ta~kt~~~i~~a~---GGVLfIDEAY~L~~~~~-----~~dfg~eaidtLl~~me~--~~~~lvvI~AGY 169 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGAEAIEILLQVMEN--QRDDLVVIFAGY 169 (287)
T ss_pred HHHCCCCCCCCHHHHHHHHHHCC---CCEEEEECHHHHCCCCC-----CCCCHHHHHHHHHHHHHH--CCCCEEEEEECC
T ss_conf 88416353521699999999645---98799824465357889-----998379999999999870--799889998467
Q ss_pred CCCCCC------HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCCC---HHHHHH--HHHCC-CHHHHHHH
Q ss_conf 810088------3331656423141000134788999999985488--7773211---024544--12037-98999999
Q gi|254780545|r 295 RPDVLD------AALLRPGRFDRQITVPNPDIVGREHILMVHSRNV--PLAPNVI---LKTIAR--GTPGF-SGADLRNL 360 (647)
Q Consensus 295 ~~~~lD------~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~d---~~~la~--~t~g~-sgAdi~~~ 360 (647)
++.++ |.|.+ ||.+.|.++-=+.++-.+|++.++++. .++++.. .+.+.+ ..++| -|.++.|+
T Consensus 170 -~~eM~~fl~~NpGL~s--Rf~~~i~F~dYt~~EL~~I~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl 246 (287)
T CHL00181 170 -KDRMDKFYESNPGLSS--RVANHVDFPDYTPEELLQIAKMMLEEQQYQLTPEAEKVLLDYIKRRMEQPLFANARSVRNA 246 (287)
T ss_pred -HHHHHHHHHHCCCHHH--HCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf -8999999985904787--6887237798599999999999999869825879999999999985089998748999999
Q ss_pred HHHHHHH
Q ss_conf 9998764
Q gi|254780545|r 361 VNEAALM 367 (647)
Q Consensus 361 ~~eAa~~ 367 (647)
+..|...
T Consensus 247 ~e~a~~~ 253 (287)
T CHL00181 247 IDRARMR 253 (287)
T ss_pred HHHHHHH
T ss_conf 9999999
No 45
>KOG0735 consensus
Probab=99.81 E-value=7.1e-19 Score=155.59 Aligned_cols=238 Identities=21% Similarity=0.238 Sum_probs=163.4
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCC----EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf 33311003787425888999974246997----02058578864442033245999999998737801206323564144
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVP----FFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~----f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~ 255 (647)
-+..+||+||+|||||-||||++.+..-+ +..+++|.+-..-+----+-++..|..|-.++|+||.+|.+|+++.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~- 508 (952)
T KOG0735 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS- 508 (952)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHC-
T ss_conf 4661898679987776999999987515650699997522104204899999999999998863780899705035405-
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHH-CCCC-CCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 55789886-268898899899853-0323-57782999962981008833316564231410001347889999999854
Q gi|254780545|r 256 RGIGLGGG-NDEREQTLNQLLVEM-DGFE-SSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 256 r~~~~~~~-~~e~~~~ln~ll~~m-dg~~-~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
+++..+| .++..+-++.+|.+| +-|. .+.-|.+||.-+-...|.|-|--|++|+.++.++.|+...|++||+...+
T Consensus 509 -~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735 509 -ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf -6844477302899999999999999987068579999851434203853347631478881589235679999999997
Q ss_pred CCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHCCC----CCCCCCCCCCHHH
Q ss_conf 887773-21102454412037989999999998764553----20242104568999750136----8655676668667
Q gi|254780545|r 333 NVPLAP-NVILKTIARGTPGFSGADLRNLVNEAALMAAR----RNRRLVTMQEFEDAKDKILM----GAERRSTAMTEEE 403 (647)
Q Consensus 333 ~~~~~~-~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r----~~~~~i~~~dl~~A~~rv~~----G~ek~~~~~~~~e 403 (647)
+.-.+. .-|++-++..|+||..-|+.-++..|-..|.+ .+.+.++.++|.+++.--.- |. +....-.=.-
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~i-k~~k~tgi~w 666 (952)
T KOG0735 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGI-KLVKSTGIRW 666 (952)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHC-CCCCCCCCCC
T ss_conf 553454567899888760784404479999999999998875167631018899999874076776403-0156678771
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999985
Q gi|254780545|r 404 KKITAYHEAGHAVVACH 420 (647)
Q Consensus 404 k~~vAyHEAGHAlva~~ 420 (647)
-.+-..||+-.++.-.+
T Consensus 667 ~digg~~~~k~~l~~~i 683 (952)
T KOG0735 667 EDIGGLFEAKKVLEEVI 683 (952)
T ss_pred EECCCHHHHHHHHHHHH
T ss_conf 00335899999999998
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=99.79 E-value=3.5e-17 Score=143.36 Aligned_cols=226 Identities=24% Similarity=0.359 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf 56988985288999999999-87433567664201233-31100378742588899997424699702058578864442
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIV-DFLCDPQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV 222 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v-~~l~~~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~ 222 (647)
.+|+||.|++++++.|.+.+ .|++ | ++| |.+||+||||||||.+|+++|.+.|..++.+.+||...
T Consensus 11 k~~~divg~~~~v~~l~~Wl~~w~~--------g-~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~--- 78 (403)
T PRK04195 11 KSLSDVVGNEKAKKQLREWIESWLK--------G-KPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 78 (403)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHHC--------C-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCC---
T ss_conf 9899985889999999999999873--------9-965746998893998799999999998499859977101147---
Q ss_pred HCCHHHHHHHHHHHHHH------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 03324599999999873------780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 223 GVGASRVRDMFEQAKNN------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 223 g~g~~~vr~lf~~a~~~------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
...||.....+-.+ ..-||++||+|.+-..-. . || .+.|.+++ ..... -+|..+|.+
T Consensus 79 ---~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d--~-gg----~~al~~~i------k~s~~-PiIli~Nd~ 141 (403)
T PRK04195 79 ---KDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNAD--R-GG----VRAILEII------KKAKN-PIILTANDP 141 (403)
T ss_pred ---HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHH--H-HH----HHHHHHHH------HCCCC-EEEEEECCC
T ss_conf ---89999999987606887788734999634344572444--7-99----99999998------54887-089982684
Q ss_pred CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 008833316564231410001347889999999854--887773211024544120379899999999987645532024
Q gi|254780545|r 297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR 374 (647)
Q Consensus 297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~ 374 (647)
...-+.-+|+ | =..|.+..|+...-...|+.-++ +++++++ .++.||+.+ +.||...+|. |.+...+..
T Consensus 142 ~~~~~~~lrs-~-c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~-aL~~Ia~~s----~GDlR~aIN~--LQ~~~~~~~ 212 (403)
T PRK04195 142 YDPSLRPLRN-A-CLMIEFKRLSKRSIVPVLKRICRKEGIECEEE-ALREIAERS----GGDLRSAIND--LQAIAEGGG 212 (403)
T ss_pred CCCCHHHHHH-H-HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHC----CCHHHHHHHH--HHHHHCCCC
T ss_conf 5567177997-6-61221799499999999999999769999999-999999987----9739999999--999974899
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHH
Q ss_conf 210456899975013686556766686677899-----9999999999
Q gi|254780545|r 375 LVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT-----AYHEAGHAVV 417 (647)
Q Consensus 375 ~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v-----AyHEAGHAlv 417 (647)
.++..|+..+ .|+..++..+--.- .++||.+++.
T Consensus 213 ~~~~~~~~~~---------~rd~~~~if~~~~~if~~~~~~~a~~~~~ 251 (403)
T PRK04195 213 RITLDDVKTG---------ERDREESIFEALDAVFKSRNYDQALEASY 251 (403)
T ss_pred CCCHHHHHHH---------CCCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7756666641---------35231438999999975698999999885
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.76 E-value=1.9e-17 Score=145.21 Aligned_cols=205 Identities=28% Similarity=0.425 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 569889852889999---99999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 145 VTFKDVAGVDEAKED---LQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 145 v~f~dv~g~~~~k~~---~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
.+|+||.|++++..+ |+.+++ . .++| -++||||||||||-||+.+|.+.+.+|+.++++.
T Consensus 10 ~~lde~vGQ~hllg~~~~L~~~i~---~--------~~~~-s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~----- 72 (417)
T PRK13342 10 KTLDEVVGQEHLLGPGKPLRRMIE---A--------GRLS-SMILWGPPGTGKTTLARIIAGATDAEFEALSAVT----- 72 (417)
T ss_pred CCHHHHCCCHHHHCCCHHHHHHHH---C--------CCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-----
T ss_conf 988885798776089719999997---6--------9997-5998896999899999999998689889961410-----
Q ss_pred HHCCHHHHHHHHHHHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCC
Q ss_conf 203324599999999873---780120632356414455789886268898899899853032357782999962--981
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRP 296 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~ 296 (647)
.|-+.+|++++.|+.. ..+|+|||||+-+-+. --+.||-.+. +..|++|||| |-.
T Consensus 73 --~gv~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE----~g~iiLIgATTENP~ 132 (417)
T PRK13342 73 --SGVKDLREVIEEAKQSRLGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTENPS 132 (417)
T ss_pred --CCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHH----CCCEEEEEECCCCCH
T ss_conf --38899999999988631489659999782005889--------------9999987511----265699974157922
Q ss_pred CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHH-HHHHCCCHHHHHHHHHHHHHH-HHHHHC
Q ss_conf 00883331656423141000134788999999985488-777321102454-412037989999999998764-553202
Q gi|254780545|r 297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLAPNVILKTIA-RGTPGFSGADLRNLVNEAALM-AARRNR 373 (647)
Q Consensus 297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~~~~d~~~la-~~t~g~sgAdi~~~~~eAa~~-a~r~~~ 373 (647)
-.|-|||+= |- +.+.+...+.++-..||+.-+... .+..++.++.=| .....+|+-|....+|---+. ....+.
T Consensus 133 f~in~aLlS--Rc-~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~ 209 (417)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGG 209 (417)
T ss_pred HHCCHHHHH--HH-HHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 534898985--65-700205899999999999999877433788776999999999814985999999999998525899
Q ss_pred CCCCHHHHHHHHHHCC
Q ss_conf 4210456899975013
Q gi|254780545|r 374 RLVTMQEFEDAKDKIL 389 (647)
Q Consensus 374 ~~i~~~dl~~A~~rv~ 389 (647)
..|+.+++.+.+.+-.
T Consensus 210 ~~i~~~~~~~~~~~~~ 225 (417)
T PRK13342 210 EVITLELLEEALQRRA 225 (417)
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7348999999984410
No 48
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.71 E-value=2e-16 Score=137.84 Aligned_cols=191 Identities=25% Similarity=0.350 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
.+|+|+.|+++++..++-.++-.+.. +..+ --+|||||||||||.||+.+|.+.+++|..+||+.+-
T Consensus 21 ~~l~e~vGQehl~~~l~~~i~a~~~~------~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~------ 87 (234)
T pfam05496 21 RRLDEYIGQEKVKENLKIFIEAAKKR------GEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 87 (234)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHHHC------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH------
T ss_conf 97666069499999999999988742------7776-6278878999988899999998408753761426664------
Q ss_pred CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----------------CCCCEE
Q ss_conf 3245999999998737801206323564144557898862688988998998530323----------------577829
Q gi|254780545|r 225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE----------------SSEGVI 288 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~----------------~~~~v~ 288 (647)
.+.-++.++...+ ...|+|||||..+-+.. -+.||--|..+. .+....
T Consensus 88 ~~~di~~~l~~~~--~~~ILFIDEIHr~nK~q--------------qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~Ft 151 (234)
T pfam05496 88 KPGDLAAILTNLE--PGDVLFIDEIHRLNRAV--------------EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFT 151 (234)
T ss_pred HHHHHHHHHHHCC--CCCEEEEECHHHCCHHH--------------HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEE
T ss_conf 3899999998458--99889996654358768--------------8744553346169999636766324652689759
Q ss_pred EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999629810088333165642314100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
+||||..+..|-++|+= ||--...+..-+.++-..|++.-++. ..++++ -++.||+...| .+.+--|++..+.-
T Consensus 152 LIgATTe~~~l~~pl~s--R~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~e-al~~IA~~s~G-d~R~ALnlLe~v~d 227 (234)
T pfam05496 152 LVGATTRAGLLTSPLRD--RFGIVLRLEFYSVEELEEIVKRSARILGVEIDEE-GAAEIARRSRG-TPRIANRLLRRVRD 227 (234)
T ss_pred EEEECCCCCCCCHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 98521566647777997--6211244246899999999999999839995999-99999997799-89999899999999
Q ss_pred HH
Q ss_conf 45
Q gi|254780545|r 367 MA 368 (647)
Q Consensus 367 ~a 368 (647)
+|
T Consensus 228 ~a 229 (234)
T pfam05496 228 FA 229 (234)
T ss_pred HH
T ss_conf 99
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=1e-15 Score=132.79 Aligned_cols=225 Identities=24% Similarity=0.333 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
.+|+|..|++++|+.|+-.++-=| .-..+.--+|||||||+|||-||.-+|+|.+++|-.+||+.+..
T Consensus 22 ~~l~efiGQ~~i~~~L~v~i~Aak-------~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek----- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAK-------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK----- 89 (328)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-----
T ss_conf 857663595999999999999999-------64999880576588998899999999998688815624500167-----
Q ss_pred CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCC----------------CCE
Q ss_conf 3245999999998737801206323564144557898862688988998-99853032357----------------782
Q gi|254780545|r 225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFESS----------------EGV 287 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~~----------------~~v 287 (647)
+.-+..++...+. .-|+|||||..+-+ ++.+ |..-|+-|.-+ ...
T Consensus 90 -~~DL~~iLt~l~~--~dvLFIDEIHRl~~---------------~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF 151 (328)
T PRK00080 90 -AGDLAALLTNLEE--GDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -HHHHHHHHHHCCC--CCEEEEHHHHHCCH---------------HHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf -4789999960887--87676506532488---------------89988579877523457864786532455589983
Q ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999962981008833316564231410001347889999999854--887773211024544120379899999999987
Q gi|254780545|r 288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAA 365 (647)
Q Consensus 288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa 365 (647)
-+||||-|...|-..|.- ||-.+..++.=+.++-.+|++...+ +.+++++ -...+|+++-| ++.--.++++...
T Consensus 152 TLIGATTr~g~Ls~PLrd--RFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~-~~~eIA~rSRG-TPRiAnrLLrRvr 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGIEIDEE-GALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred EEEECCCCCCCCCHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf 474013676657767897--5793366345899999999999999839887899-99999986389-8399999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 645532024210456899975013686556766686677899
Q gi|254780545|r 366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT 407 (647)
Q Consensus 366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v 407 (647)
-.|.-++...|+.+....|++..-. ...-+++.+++..
T Consensus 228 Dfa~v~~~~~I~~~~~~~aL~~l~I----D~~GLd~~Dr~~L 265 (328)
T PRK00080 228 DFAQVKGDGIITREIADKALDMLGV----DELGLDEMDRKYL 265 (328)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCC----CCCCCCHHHHHHH
T ss_conf 9999837996599999999995698----6348998899999
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=3.1e-16 Score=136.46 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
.+++||.|+++...+=.-+-..++. .-..-++||||||||||-||+.||+..+.+|+.+|+.. .
T Consensus 25 ~~Lde~vGQ~hllg~g~~Lrr~i~~---------~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~-------s 88 (726)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------A 88 (726)
T ss_pred CCHHHHCCCHHHCCCCCHHHHHHHC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-------C
T ss_conf 9877735957542898289999976---------99982788897999999999999887488679985620-------3
Q ss_pred CHHHHHHHHHHHHHH-----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCC
Q ss_conf 324599999999873-----780120632356414455789886268898899899853032357782999962--9810
Q gi|254780545|r 225 GASRVRDMFEQAKNN-----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPD 297 (647)
Q Consensus 225 g~~~vr~lf~~a~~~-----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~ 297 (647)
|-+.||++++.|+.. ...|+|||||.-+-+.. -..||-.+ .+..|++|||| |=--
T Consensus 89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~Q--------------QD~LLp~v----E~G~i~LIGATTENP~F 150 (726)
T PRK13341 89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQ--------------QDALLPWV----ENGTVTLIGATTENPYF 150 (726)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHH--------------HHHHHHHH----CCCEEEEEEECCCCCCE
T ss_conf 7799999999999998745996599986254258878--------------99878886----06838999704789743
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC---------CCCCCCCHHHHHHHHHCCCHHHHHHHHH--HHHH
Q ss_conf 0883331656423141000134788999999985488---------7773211024544120379899999999--9876
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV---------PLAPNVILKTIARGTPGFSGADLRNLVN--EAAL 366 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~---------~~~~~~d~~~la~~t~g~sgAdi~~~~~--eAa~ 366 (647)
.+-+||+- |- +.+.+...+.++-..|++.-+.+. .++++ -++.|++ +|+-|....+| |.+.
T Consensus 151 ~vn~ALlS--R~-~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~-al~~l~~----~s~GDaR~aLN~LElav 222 (726)
T PRK13341 151 EVNKALVS--RS-RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPE-AEKHLVD----VANGDARSLLNALELAV 222 (726)
T ss_pred EECHHHHH--HC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHH----HCCCCHHHHHHHHHHHH
T ss_conf 64298883--23-46674389999999999999876743256678775989-9999999----75973999999999999
Q ss_pred HHHHHH---CCCCCHHHHHHHHHH
Q ss_conf 455320---242104568999750
Q gi|254780545|r 367 MAARRN---RRLVTMQEFEDAKDK 387 (647)
Q Consensus 367 ~a~r~~---~~~i~~~dl~~A~~r 387 (647)
.+...+ ...|+...+++++.+
T Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~~~ 246 (726)
T PRK13341 223 ESTPPDEDGVIHINLAIAEESIQQ 246 (726)
T ss_pred HHCCCCCCCCEEECHHHHHHHHHH
T ss_conf 707457688344359999999856
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.2e-15 Score=129.16 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
.+++||.|+++...+-.-+-..++ ..-.--++||||||||||-||+.+|++.+.+|..+|+.. -
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~ 84 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------S 84 (436)
T ss_pred CCHHHHCCHHHHHCCCCHHHHHHH---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCC-------C
T ss_conf 778785571866189943899996---------499860577789998888999999876177669951523-------4
Q ss_pred CHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCC
Q ss_conf 32459999999987378----0120632356414455789886268898899899853032357782999962--98100
Q gi|254780545|r 225 GASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPDV 298 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~~ 298 (647)
|-+.+|++|++|++..- .|+|||||.-+-+.. . ..||-.| .+..|++|||| |-.-.
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------Q-------D~lLp~v----E~G~iilIGATTENPsF~ 146 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------Q-------DALLPHV----ENGTIILIGATTENPSFE 146 (436)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH-------H-------HHHHHHH----CCCEEEEEECCCCCCCEE
T ss_conf 679999999999998725883499872253337445-------6-------5510332----488689996267898714
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCC-CCC-----CHHHHHHHHHCCCHHHHHHHHHH--HHHHH
Q ss_conf 883331656423141000134788999999985--488777-321-----10245441203798999999999--87645
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLA-PNV-----ILKTIARGTPGFSGADLRNLVNE--AALMA 368 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~-~~~-----d~~~la~~t~g~sgAdi~~~~~e--Aa~~a 368 (647)
|-|||+- | -+.+++..-+.++-+.+++.-+ ....+. ..+ -++.+++. |..|....+|- -+..+
T Consensus 147 ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~----s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 147 LNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL----SNGDARRALNLLELAALS 219 (436)
T ss_pred ECHHHHH--H-HHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
T ss_conf 0388861--1-04156516998999999999986541377765566888999999986----286199998899999986
Q ss_pred HHHHCCCCCHHHHHHHHHHC
Q ss_conf 53202421045689997501
Q gi|254780545|r 369 ARRNRRLVTMQEFEDAKDKI 388 (647)
Q Consensus 369 ~r~~~~~i~~~dl~~A~~rv 388 (647)
++.+. .+..+++.+.+.+.
T Consensus 220 ~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 220 AEPDE-VLILELLEEILQRR 238 (436)
T ss_pred CCCCC-CCCHHHHHHHHHHH
T ss_conf 27775-24799999998655
No 52
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=4.3e-14 Score=120.96 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHH
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469-----9702058578864
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVE 219 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~ 219 (647)
.+|+||.|++++++.|+..+. + .++|. +|||||||||||-+|+++|.+.. -.++.+++|+-.
T Consensus 13 ~~l~di~g~~~~~~~L~~~i~---~--------~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r- 79 (318)
T PRK00440 13 RSLDEVVGQEEIVERLKSFVK---E--------KNMPH-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER- 79 (318)
T ss_pred CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC-
T ss_conf 989994196999999999998---7--------99866-9888959988999999999997698643476895164566-
Q ss_pred HHHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 4420332459999999987378------0120632356414455789886268898899899853032357782999962
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
|..-||+.....-+..| -|++|||+|.+.. ..-|.|+--|+-+..+ +.+|-+|
T Consensus 80 -----~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~--------------~aq~aL~~~mE~~~~~--~~fil~~ 138 (318)
T PRK00440 80 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQT--TRFILSC 138 (318)
T ss_pred -----CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH--------------HHHHHHHHHHHCCCCC--CEEEEEC
T ss_conf -----717899999999972677899738999868553225--------------5678887643105666--2588634
Q ss_pred CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98100883331656423141000134788999999985--4887773211024544120379899999999987645532
Q gi|254780545|r 294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
|.++.+-++|.= |. ..|.+..|+.+.-...|+.-+ .+++++++ .+..++..+. .|+...+|-- .++..
T Consensus 139 n~~~kii~~i~S--Rc-~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~-~l~~i~~~s~----gdlR~ain~L--q~~~~ 208 (318)
T PRK00440 139 NYSSKIIDPIQS--RC-AVFRFSPLPKEAVIERLRYIAKNEGLEITDD-ALEAIYYVSE----GDMRKAINAL--QAAAA 208 (318)
T ss_pred CCCCCCCCCHHH--HH-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC----CCHHHHHHHH--HHHHH
T ss_conf 883337615565--51-0111578999999999999999859998999-9999998649----9899999999--99997
Q ss_pred HCCCCCHHHHHHHH
Q ss_conf 02421045689997
Q gi|254780545|r 372 NRRLVTMQEFEDAK 385 (647)
Q Consensus 372 ~~~~i~~~dl~~A~ 385 (647)
....|+.+++.+..
T Consensus 209 ~~~~it~~~v~~~~ 222 (318)
T PRK00440 209 TGKEVTEEAVYKIT 222 (318)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 48987899999997
No 53
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=4.2e-14 Score=121.06 Aligned_cols=145 Identities=28% Similarity=0.357 Sum_probs=97.5
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHH--HHHHHCCC-CCCEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 00011242256988-9852889999999998-7433567--66420123-331100378742588899997424699702
Q gi|254780545|r 136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIVD-FLCDPQK--FKRLGGRI-PHGVLLVGPPGTGKTLLARAVAGEANVPFF 210 (647)
Q Consensus 136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v~-~l~~~~~--~~~~g~~~-p~g~ll~GppGtGKTlla~a~a~e~~~~f~ 210 (647)
+.-.|.+..-..|. |.|+++||.-|.-.|. ..|.-.. -..-...+ +..|||.||.|||||+||+.+|.-.+|||.
T Consensus 59 ~lp~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~ 138 (411)
T PRK05342 59 ELPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFA 138 (411)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 69997999998621402848888999999999999986021335665213453899899997788999999998699989
Q ss_pred CCCHHHHHH-HHHHCC-HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf 058578864-442033-2459999999987----3780120632356414455789886268-898899899853032
Q gi|254780545|r 211 TISGSDFVE-LFVGVG-ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF 281 (647)
Q Consensus 211 ~~~~s~~~~-~~~g~g-~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~ 281 (647)
-+.++.|-| -|||.- ++-+++|.+.|.- ..--||||||||-|+++.+..+ .+.|- .|-+-..||--|.|-
T Consensus 139 iaDAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s-~trDVSgEGVQqaLLkiiEGt 215 (411)
T PRK05342 139 IADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGT 215 (411)
T ss_pred EEEECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHCCC
T ss_conf 98612001267456079999999999828889988368288850234542478888-877765124899999987587
No 54
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.57 E-value=1.5e-13 Score=117.08 Aligned_cols=95 Identities=31% Similarity=0.474 Sum_probs=70.0
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 11242256988-9852889999999998743356766420-----12333110037874258889999742469970205
Q gi|254780545|r 139 SGNVGSVTFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLG-----GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g-----~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
+|.+..-..|. |.|+++||..+.=.+ .|..+-+.+- --.|+.|||.||.|||||++||-+|.=+++||+.+
T Consensus 5 tP~eIv~~LD~yIIGQ~~AKkavAVAl---rNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIAL---RNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 989999985360108277667877788---77787531662212334643168878888667899999999848985875
Q ss_pred CHHHHHH-HHHHC-CHHHHHHHHHHH
Q ss_conf 8578864-44203-324599999999
Q gi|254780545|r 213 SGSDFVE-LFVGV-GASRVRDMFEQA 236 (647)
Q Consensus 213 ~~s~~~~-~~~g~-g~~~vr~lf~~a 236 (647)
.++.|-| -|||. =++-||+|.+.|
T Consensus 82 eATk~TEvGYvGrDVEsiIrdLv~~a 107 (442)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIA 107 (442)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 21310003435643788999999999
No 55
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=2.6e-13 Score=115.27 Aligned_cols=219 Identities=25% Similarity=0.317 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHH-------
Q ss_conf 898528899999999987433567664201233311003787425888999974246-----99702058578-------
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSD------- 216 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~------- 216 (647)
.+.|=|+ |++++..+|+..- -...|..+++|||||||||..+|.+..+. ++.|+++.+..
T Consensus 31 ~l~~Re~---Ei~~l~~~l~~~l-----~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i 102 (394)
T PRK00411 31 NLPHREE---QIEELAFALRPAL-----RGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCCHHH---HHHHHHHHHHHHH-----CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 8988599---9999999999997-----5999984799889999899999999999997468965999969668989999
Q ss_pred HHHHH---HHCCH-H---HHHHHHHHHH-----HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 86444---20332-4---5999999998-----73780120632356414455789886268898899899853032357
Q gi|254780545|r 217 FVELF---VGVGA-S---RVRDMFEQAK-----NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS 284 (647)
Q Consensus 217 ~~~~~---~g~g~-~---~vr~lf~~a~-----~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~ 284 (647)
|.+.+ .|... . ...++|+... ...++||.+||||.+..+.+. .+|-+|+-.-+. ..+
T Consensus 103 ~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~----------~vLY~L~r~~~~-~~~ 171 (394)
T PRK00411 103 LSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGN----------DVLYSLLRAHEE-YPG 171 (394)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC----------HHHHHHHHCCCC-CCC
T ss_conf 999999956998987787899999999998616697589999655402036650----------899999854022-688
Q ss_pred CCEEEEEECCCC---CCCCHHHCCCCCC-CCEEEECHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 782999962981---0088333165642-3141000134788999999985488----7773211024544120379899
Q gi|254780545|r 285 EGVILIAATNRP---DVLDAALLRPGRF-DRQITVPNPDIVGREHILMVHSRNV----PLAPNVILKTIARGTPGFSGAD 356 (647)
Q Consensus 285 ~~v~vi~aTn~~---~~lD~al~RpgRf-d~~i~~~~P~~~~r~~i~~~~~~~~----~~~~~~d~~~la~~t~g~sgAd 356 (647)
..+.+||-+|.. +.|||.+.- || ...|.+++=+...-.+||+..++.- -++++ -++.+|+.+.--+| |
T Consensus 172 ~~~~vI~IsN~~~~~~~Ldprv~S--~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~-~i~~~A~~~a~~~G-D 247 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDE-VLELIADLTGREHG-D 247 (394)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHCCC-C
T ss_conf 738999997687177664077750--2786289858999899999999999841455678978-99999999855047-5
Q ss_pred HH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99---99999876455320242104568999750136
Q gi|254780545|r 357 LR---NLVNEAALMAARRNRRLVTMQEFEDAKDKILM 390 (647)
Q Consensus 357 i~---~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~ 390 (647)
.. .+|+.|+.+|-+++++.|+.+|+..|.+++..
T Consensus 248 aR~Aldllr~A~e~Ae~~g~~~Vt~~hV~~A~~~~~~ 284 (394)
T PRK00411 248 ARVAIDLLRRAGEIAEREGSRKVTEEDVRKAYEKSEP 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 8999999999999999718996589999999998600
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.53 E-value=1.4e-13 Score=117.29 Aligned_cols=183 Identities=25% Similarity=0.345 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE 219 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~ 219 (647)
.+|+||.|++++++.|+..+. . .++|. +|||||||||||.+|+|+|.+... ++....+|++.+
T Consensus 12 ~~~~dvvGq~~i~~~L~~~~~---~--------~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~ 79 (337)
T PRK12402 12 SLFEDILGQESVVDHLSALAA---S--------GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFD 79 (337)
T ss_pred CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf 979980397999999999997---7--------99876-98889298489999999999967997567833311653113
Q ss_pred --------------HHHHCCH--HHHHHHHHH----HHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --------------4420332--459999999----987378-----012063235641445578988626889889989
Q gi|254780545|r 220 --------------LFVGVGA--SRVRDMFEQ----AKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL 274 (647)
Q Consensus 220 --------------~~~g~g~--~~vr~lf~~----a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l 274 (647)
.+.+.+. ..+++.++. .-...| .|++|||.|.+-+ ..-|.|
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~--------------~Aq~aL 145 (337)
T PRK12402 80 QGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE--------------DAQQAL 145 (337)
T ss_pred CCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--------------HHHHHH
T ss_conf 564001016642344201533277378999999999861488778804999707131799--------------999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCC
Q ss_conf 9853032357782999962981008833316564231410001347889999999854--88777321102454412037
Q gi|254780545|r 275 LVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGF 352 (647)
Q Consensus 275 l~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~ 352 (647)
|--|. +....+.+|-+||+++.+=|+|+= |- ..+.+..|+.+.-...|+.-++ +..++++ .++.||+.+.|
T Consensus 146 lk~lE--e~~~~~~fIl~t~~~~~ii~tI~S--RC-~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~-~l~~ia~~s~G- 218 (337)
T PRK12402 146 RRIME--RYSETCRFIFSTTQPSKLIPPIRS--RC-LPLFFRPVPDDEIRSVLESIAAAEGVEISDD-GLDLIAYYAEG- 218 (337)
T ss_pred HHHHH--CCCCCEEEEEECCCCCCCCHHHHH--HC-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-
T ss_conf 98874--088766998723864447524776--24-4543589899999999999999849998999-99999998699-
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254780545|r 353 SGADLRNLVNE 363 (647)
Q Consensus 353 sgAdi~~~~~e 363 (647)
|+...+|-
T Consensus 219 ---dlR~ain~ 226 (337)
T PRK12402 219 ---DLRKAILT 226 (337)
T ss_pred ---CHHHHHHH
T ss_conf ---89999999
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=4.4e-13 Score=113.66 Aligned_cols=227 Identities=22% Similarity=0.286 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 42256988985288999999999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
.|+ +|+|..|++++|+.|+-.+.- .+.-...+-.+|||||||.|||-||.-+|+|.|+++-.+||+-+.-
T Consensus 21 RP~-~l~efiGQ~~vk~~L~ifI~A-------Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPK-TLDEFIGQEKVKEQLQIFIKA-------AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CCC-CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC--
T ss_conf 865-488851839999999999999-------9844987674786479987688899999998567737636620157--
Q ss_pred HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------CC--------
Q ss_conf 20332459999999987378012063235641445578988626889889989985303235--------77--------
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--------SE-------- 285 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--------~~-------- 285 (647)
+.-+-.++..-+ .--|+|||||..+++.= ---|.--|+-|.- +.
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v--------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV--------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----HHHHHHHHHCCC--CCCEEEEEHHHHCCHHH--------------HHHHHHHHHHEEEEEEECCCCCCCEEECCCC
T ss_conf ----265999986398--67767772553147428--------------9896467531057789724875534763799
Q ss_pred CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 82999962981008833316564231410001347889999999854887--7732110245441203798999999999
Q gi|254780545|r 286 GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNE 363 (647)
Q Consensus 286 ~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~e 363 (647)
..-.||||-|.-+|-.-|.- ||--...+..=+.++-.+|++...+.+. ++++ -...+|+++-|- +.=-.+|++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred CEEEEEECCCCCCCCCHHHH--HCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCCC-CHHHHHHHHH
T ss_conf 81375101346645633688--6286045405888999999998888738776857-999999863699-3899999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 8764553202421045689997501368655676668667789
Q gi|254780545|r 364 AALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKI 406 (647)
Q Consensus 364 Aa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~ 406 (647)
-.=.|.-++...|+..--.+|+.....- ..-+++.+++.
T Consensus 227 VRDfa~V~~~~~I~~~ia~~aL~~L~Vd----~~GLd~~D~k~ 265 (332)
T COG2255 227 VRDFAQVKGDGDIDRDIADKALKMLDVD----ELGLDEIDRKY 265 (332)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCC----CCCCCHHHHHH
T ss_conf 9999998168820489999999872964----02556899999
No 58
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.53 E-value=1.1e-14 Score=125.39 Aligned_cols=207 Identities=26% Similarity=0.410 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCC-CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH---
Q ss_conf 988985288999999999874--------335676642012-33311003787425888999974246997020585---
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFL--------CDPQKFKRLGGR-IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG--- 214 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l--------~~~~~~~~~g~~-~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~--- 214 (647)
=.|=-|+++||+.+.|.+.-. |.|++-..+.++ + +.||||||.|||-||+.||.-.+-.||-+|-
T Consensus 410 D~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqI---lClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~ 486 (941)
T TIGR00763 410 DEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQI---LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGV 486 (941)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE---EEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 1678888773034135888989998764036444778888767---8720726954222789999996880499952672
Q ss_pred ---HHHH---HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH--C-CCCCCCCCCCHHHHHHHHHHHHHHCC-----
Q ss_conf ---7886---44420332459999999987378012063235641--4-45578988626889889989985303-----
Q gi|254780545|r 215 ---SDFV---ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG--R-HRGIGLGGGNDEREQTLNQLLVEMDG----- 280 (647)
Q Consensus 215 ---s~~~---~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~--~-~r~~~~~~~~~e~~~~ln~ll~~mdg----- 280 (647)
+|+. .-|||-=+-|+=+-..+|+..-| ++.|||||=+| + .||.- =..||.-+|=
T Consensus 487 ~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NP-l~LlDEIDK~~~~~~~~GDP-----------aSALLEvLDPEQN~~ 554 (941)
T TIGR00763 487 RDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LILLDEIDKIGLKSSFRGDP-----------ASALLEVLDPEQNNA 554 (941)
T ss_pred EEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEEEEEECCCCCCCCCH-----------HHHHHHHCCHHHCCC
T ss_conf 203112786432034672578999876041588-06862022001678865563-----------788864128643604
Q ss_pred CCCC--------CCEE--EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CCC-CCCH--
Q ss_conf 2357--------7829--99962981008833316564231410001347889999999854887-----773-2110--
Q gi|254780545|r 281 FESS--------EGVI--LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LAP-NVIL-- 342 (647)
Q Consensus 281 ~~~~--------~~v~--vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~~-~~d~-- 342 (647)
|..+ +.|+ .||+-|+.|.+.+.||= |.+ .|.+.==..++-..|-+.||=.+- +++ ++++
T Consensus 555 F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~PLLD--RME-vI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d 631 (941)
T TIGR00763 555 FSDHYLDVPFDLSKVLCYFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISD 631 (941)
T ss_pred CCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCC--CEE-EEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECH
T ss_conf 25530023400420021000244757677722137--402-452388876789999985471367987088813221268
Q ss_pred HHHHHHHHCCC---H-----HHHHHHHHHHHHHHHHH
Q ss_conf 24544120379---8-----99999999987645532
Q gi|254780545|r 343 KTIARGTPGFS---G-----ADLRNLVNEAALMAARR 371 (647)
Q Consensus 343 ~~la~~t~g~s---g-----Adi~~~~~eAa~~a~r~ 371 (647)
+.|-.....|+ | -.|+.||+-+|+.-++.
T Consensus 632 ~al~~lI~~YtREaGVRNL~r~I~~i~RK~A~~~~~~ 668 (941)
T TIGR00763 632 EALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQ 668 (941)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999875132021338999999999999999871
No 59
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=2.4e-13 Score=115.61 Aligned_cols=218 Identities=20% Similarity=0.326 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV- 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~- 218 (647)
-=+|--|++++|+.+.|.+...+-.. .. -..=++|+||||+|||-|||+||...|-+|+.+|- +++.
T Consensus 320 Ld~dHyGL~~vKeRile~lAv~~~~~---~~---kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirG 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVN---KI---KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCC---CC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf 76543065779999999999998624---67---7877996469987724699999998589869980688788888256
Q ss_pred --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC------
Q ss_conf --4442033245999999998737801206323564144-5578988626889889989985303-----2357------
Q gi|254780545|r 219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS------ 284 (647)
Q Consensus 219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~------ 284 (647)
.-|+|.-+-|+=+-..+|..+-| |+.+||||-+|.. || | --..||.-+|- |..+
T Consensus 394 HrrTYvgampGrii~~l~~a~~~nP-v~llDEiDK~~~~~~G-------d----p~salLEvLDpeQN~~F~Dhyl~~~~ 461 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------D----PASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCC-------C----HHHHHHHHCCHHHCCCCCCCEEECCC
T ss_conf 4334344368389999997489885-6650035552245589-------9----88999984597655640003220464
Q ss_pred --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC-CCCCH--HHHHHHHHCCC-
Q ss_conf --782999962981008833316564231410001347889999999854887-----77-32110--24544120379-
Q gi|254780545|r 285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA-PNVIL--KTIARGTPGFS- 353 (647)
Q Consensus 285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~-~~~d~--~~la~~t~g~s- 353 (647)
+.|++||+.|..+ +.++|+- |++ .|+++-=+.++..+|-+.|+-.+- +. ..+++ +.+-....+||
T Consensus 462 DlS~v~Fi~TaN~~~-ip~pLlD--RmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr 537 (784)
T PRK10787 462 DLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred CHHHEEEEEECCCCC-CCHHHHH--HEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 522258997327677-8767763--121-554116767889999997453999998289965674399999998753365
Q ss_pred --H-----HHHHHHHHHHHHHHHHHHC-C--CCCHHHHHHHH
Q ss_conf --8-----9999999998764553202-4--21045689997
Q gi|254780545|r 354 --G-----ADLRNLVNEAALMAARRNR-R--LVTMQEFEDAK 385 (647)
Q Consensus 354 --g-----Adi~~~~~eAa~~a~r~~~-~--~i~~~dl~~A~ 385 (647)
| -.|+.+|+.+|..-+.... + .|+.+++.+-+
T Consensus 538 EaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~l 579 (784)
T PRK10787 538 EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHH
T ss_conf 444251688999999999999970788785588899999982
No 60
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.2e-13 Score=115.90 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC-------------
Q ss_conf 6988985288999999999874335676642012333110037874258889999742469970205-------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI------------- 212 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~------------- 212 (647)
+|+||.|++++...|+..+.- .++|...||+||+|||||..||++|...+|.=-..
T Consensus 14 ~f~dvvgQ~~v~~~L~n~i~~-----------~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i 82 (541)
T PRK05563 14 TFEDVVGQEHITTTLKNQIIN-----------NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKI 82 (541)
T ss_pred CHHHHCCCHHHHHHHHHHHHC-----------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 776624849999999999984-----------993204530387995899999999999579998889857514889998
Q ss_pred -CHH--HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -857--8864442--0332459999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r 213 -SGS--DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 213 -~~s--~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
.|+ |.+|+=. --|-..||++-+.. +.+| -|+.|||.|.+- ....|.||--+. +
T Consensus 83 ~~g~~~Dv~Eidaas~~gvd~iR~~~~~~-~~~p~~~~~Kv~IiDEvhmls--------------~~a~nallKtlE--e 145 (541)
T PRK05563 83 NEGLLMDVIEIDAASNNGVDDIREIIENV-KYPPQEGKYKVYIMDEVHMLS--------------QGAVNAFLKTLE--E 145 (541)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHC-EECCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHH--C
T ss_conf 56898873662444447889999999761-048767870599997723389--------------999999999985--4
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 5778299996298100883331-656423141000134788999999985488777321102454412037989999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~ 361 (647)
....|+.|-||+.|+.+-+.++ |--|||.+ .++..+...|..-.- ...+...+++ -+..+|+...| |=.|--+++
T Consensus 146 Pp~~~~Filatte~~ki~~tI~SRcq~f~f~-~i~~~~i~~~L~~I~-~~E~i~~~~~-al~lIa~~s~G-smRDAlslL 221 (541)
T PRK05563 146 PPSNVIFILATTDPQKLPITILSRCQRFDFK-RIKVKDIFKRLRKIV-EEQGIFADDK-SLNLIARMSDG-AMRDALSIL 221 (541)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHEEEEEEE-ECCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHH
T ss_conf 8777569997698442745567421357754-389999999999999-9849998789-99999974599-778899999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998764553202421045689997
Q gi|254780545|r 362 NEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 362 ~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
.++... +...|+.+++.+.+
T Consensus 222 dQ~is~----~~~~it~~~v~~~l 241 (541)
T PRK05563 222 DQAISM----GDGKVDYDDVVSML 241 (541)
T ss_pred HHHHHH----CCCCCCHHHHHHHH
T ss_conf 999983----59986699999996
No 61
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.52 E-value=2.6e-13 Score=115.27 Aligned_cols=203 Identities=31% Similarity=0.479 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC------------
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702058------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS------------ 213 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~------------ 213 (647)
||+||.|++.+.+.|+-.+.. .|++..-||+||-|||||-.||-+|.-.+|+ -...
T Consensus 12 ~F~d~~GQ~~iv~tL~NAi~~-----------~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i 79 (363)
T TIGR02397 12 TFEDVIGQEHIVKTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEI 79 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHH
T ss_conf 611023517999999999971-----------8966234502859976355899999986588-7877877775022776
Q ss_pred ----HHHHHHHHHHCCHHH-----HHHHHHHHHHHCCHH-----EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----578864442033245-----999999998737801-----206323564144557898862688988998998530
Q gi|254780545|r 214 ----GSDFVELFVGVGASR-----VRDMFEQAKNNSPCI-----VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 214 ----~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p~i-----ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
..|++|+ .|||+ ||+|=+.. +.+|+. --|||..-+= .+.-|.||--+.
T Consensus 80 ~~g~~~DviEi---DAASN~gVD~IR~l~e~v-~y~P~~~kYKvYIIDEVHMLS--------------~~AFNALLKTLE 141 (363)
T TIGR02397 80 NSGSSLDVIEI---DAASNNGVDDIRELRENV-KYAPSKGKYKVYIIDEVHMLS--------------KSAFNALLKTLE 141 (363)
T ss_pred HCCCCCCEEEE---CCCCCCCHHHHHHHHHHH-CCCCCCCCCCEEEEECCCCCC--------------HHHHHHHHHHHC
T ss_conf 52898666886---486568788999998730-368755443358873230286--------------568999876522
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
++...|+.|=||--|+.+.+-++ |--|||.+ .|+..+...|.+=. .+-.+.+.++. -|+.||+...| |-.|=.
T Consensus 142 --EPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk-~i~~~~i~~~L~~I-~~~E~I~~e~~-AL~~IA~~a~G-S~RDAl 215 (363)
T TIGR02397 142 --EPPEHVVFILATTEPHKIPATILSRCQRFDFK-RIPLEDIVERLKKI-LDKEGIKIEDE-ALELIARAADG-SMRDAL 215 (363)
T ss_pred --CCCCCEEEEEECCCHHHCCCCCEEECEEECCC-CCCHHHHHHHHHHH-HHHHCCCCCHH-HHHHHHHHCCC-CCCHHH
T ss_conf --79876288873487112055402100031267-89989999999999-98708831778-99999996289-610688
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999998764553202421045689997
Q gi|254780545|r 359 NLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
+|..++....-.. ...|+.+++.+-+
T Consensus 216 sllDQ~~~~~~~~-DG~i~~~~v~~~l 241 (363)
T TIGR02397 216 SLLDQAISFGNGS-DGKITYEDVNEML 241 (363)
T ss_pred HHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf 9999999826887-8865789999983
No 62
>KOG2028 consensus
Probab=99.51 E-value=4.1e-13 Score=113.86 Aligned_cols=207 Identities=29% Similarity=0.440 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---EECCCHHHHHHHH
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997---0205857886444
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP---FFTISGSDFVELF 221 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~---f~~~~~s~~~~~~ 221 (647)
-+.+|+.|++++...---+-.+++. .++| -++|+||||||||-||+-+|..+.-+ |+.+|+..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~----- 200 (554)
T KOG2028 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN----- 200 (554)
T ss_pred CHHHHHCCHHHHCCCCHHHHHHHHC--------CCCC-CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC-----
T ss_conf 3687750534414832689999870--------8887-0588669987658899999860577742799974145-----
Q ss_pred HHCCHHHHHHHHHHHHHH-----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--C
Q ss_conf 203324599999999873-----780120632356414455789886268898899899853032357782999962--9
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNN-----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--N 294 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~-----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n 294 (647)
.+-.-||++|++|++. ...|+|||||.-+-+... | .||-. -.+..|++|||| |
T Consensus 201 --a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-------D-------~fLP~----VE~G~I~lIGATTEN 260 (554)
T KOG2028 201 --AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-------D-------TFLPH----VENGDITLIGATTEN 260 (554)
T ss_pred --CCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHH-------H-------CCCCE----ECCCCEEEEECCCCC
T ss_conf --661889999999887876524406987377655323211-------0-------03421----306706998536689
Q ss_pred CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC----------CCCCC----CCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 81008833316564231410001347889999999854----------88777----32110245441203798999999
Q gi|254780545|r 295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR----------NVPLA----PNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~----------~~~~~----~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
-.-.|-.||+- |- +.+....-..+.-+.||..-.. ++|.. ++--++.+|..+.|=.-+-|..|
T Consensus 261 PSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L 337 (554)
T KOG2028 261 PSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL 337 (554)
T ss_pred CCCCHHHHHHH--CC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 76011277873--16-0667336888999999999987632102568899983124568899999870473188887789
Q ss_pred HHHHHHHHHHHH---CCCCCHHHHHHHHHHC
Q ss_conf 999876455320---2421045689997501
Q gi|254780545|r 361 VNEAALMAARRN---RRLVTMQEFEDAKDKI 388 (647)
Q Consensus 361 ~~eAa~~a~r~~---~~~i~~~dl~~A~~rv 388 (647)
---+.+.+.|.+ +..++.+|+.+++.+-
T Consensus 338 ems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028 338 EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
T ss_conf 9999988752477656400288899998531
No 63
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5e-13 Score=113.25 Aligned_cols=204 Identities=27% Similarity=0.437 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------CC-----
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699702-------05-----
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------TI----- 212 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------~~----- 212 (647)
.+|+||.|+++++..|+..+. ..++|...||+||+|||||.+|+++|....++=- ..
T Consensus 12 ~~F~dvvGQe~i~~~L~nal~-----------~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~ 80 (557)
T PRK07270 12 QTFDEMVGQEVVATTLKQAVE-----------SGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRD 80 (557)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 987671481999999999998-----------599540442108998689999999999957999899998887779999
Q ss_pred ----CHHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ----8578864442--0332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 213 ----SGSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 213 ----~~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
+.++++++-. .-|-..||++-+.+ ..+| -|+.|||.|.+- ...-|.||--|.
T Consensus 81 i~~g~~~DviEidaas~~gVd~IRei~~~~-~~~P~~~~yKV~IIDEah~Ls--------------~~A~NALLKtLE-- 143 (557)
T PRK07270 81 ITNGSLEDVIEIDAASNNGVDEIRDIRDKS-TYAPSRATYKVYIIDEVHMLS--------------TGAFNALLKTLE-- 143 (557)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHH--
T ss_conf 875899974873477767889999999984-238777883899971445349--------------999998999852--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 35778299996298100883331-656423141000134788999-9999854887773211024544120379899999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREH-ILMVHSRNVPLAPNVILKTIARGTPGFSGADLRN 359 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~-i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~ 359 (647)
+....++.|-+||.|+.|-|.++ |--|||.+ .++..|...|.. |.+ -.+...+++ -|..+|+...| +=.|--+
T Consensus 144 EPP~~~vFIL~Ttep~kIl~TI~SRCQrf~F~-~i~~~~i~~~L~~I~~--~E~i~~~~~-aL~~Ia~~a~G-~mRdAls 218 (557)
T PRK07270 144 EPTENVVFILATTELHKIPATILSRVQRFEFK-SIKTKAIREHLAWILD--KEGISFEVE-ALNLIARRAEG-GMRDALS 218 (557)
T ss_pred CCCCCEEEEEEECCHHHCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHHHH
T ss_conf 89987699998499475928887430001088-8999999999999999--839986999-99999997799-6878999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999876455320242104568999
Q gi|254780545|r 360 LVNEAALMAARRNRRLVTMQEFEDA 384 (647)
Q Consensus 360 ~~~eAa~~a~r~~~~~i~~~dl~~A 384 (647)
++..+.-. .+...|+.++..+.
T Consensus 219 iLdQ~~s~---~~~~~it~~~v~~~ 240 (557)
T PRK07270 219 ILDQALSL---SQDNQVTIAIAEEI 240 (557)
T ss_pred HHHHHHHC---CCCCCCCHHHHHHH
T ss_conf 99999971---79997679999999
No 64
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.48 E-value=4.5e-13 Score=113.61 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702058578864442033
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g 225 (647)
+|+|..|++++|+.|+=.+.-=| .=-..+=.+|||||||-|||-||.-||+|.|+..=.+||+-+.
T Consensus 2 ~L~eFiGQ~~vk~~L~l~I~AAk-------~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~------- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------- 67 (305)
T ss_pred CCHHCCCCHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCC-------
T ss_conf 80110582889999999999998-------2489734166317568746789999999838932674067554-------
Q ss_pred HHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCC--------CC--------CE
Q ss_conf 2459999999987-37801206323564144557898862688988998-9985303235--------77--------82
Q gi|254780545|r 226 ASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ-LLVEMDGFES--------SE--------GV 287 (647)
Q Consensus 226 ~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~-ll~~mdg~~~--------~~--------~v 287 (647)
|=.||-.---. ..-.|+|||||..+.+. +-+ |---|+-|.= +. .-
T Consensus 68 --kPgDlaaiLt~L~~gDVLFIDEIHRL~p~---------------~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPF 130 (305)
T TIGR00635 68 --KPGDLAAILTNLEEGDVLFIDEIHRLSPA---------------IEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF 130 (305)
T ss_pred --CHHHHHHHHHHCCCCCEEECCHHHHCCHH---------------HHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCC
T ss_conf --75789999970568963101256504833---------------4531053001217877871289852576068694
Q ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99996298100883331656423141000134788999999985488777-32110245441203798999999999876
Q gi|254780545|r 288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
-.||||-|+-+|=.-|.= ||--.-.+++=+.++-.+|++.+..-+.+. +.-....||+++-| |+-==.+|++.=.=
T Consensus 131 TLvGATTR~G~lt~PLrd--RFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRG-TPRIAnRLLRRVRD 207 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRD--RFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred CCCCCCCCCCCCCCCHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 420000347741031334--544745402689878999987533441430077899999875478-63788877676644
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 45532024210456899975013
Q gi|254780545|r 367 MAARRNRRLVTMQEFEDAKDKIL 389 (647)
Q Consensus 367 ~a~r~~~~~i~~~dl~~A~~rv~ 389 (647)
.|--.+...|+.+--.+|++.-.
T Consensus 208 fA~V~~~~~I~~~i~~~AL~~L~ 230 (305)
T TIGR00635 208 FAQVRGQGVITRDIALKALEMLD 230 (305)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 88872678738899999988625
No 65
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.48 E-value=9.5e-14 Score=118.49 Aligned_cols=132 Identities=33% Similarity=0.403 Sum_probs=90.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHH--------------HHHHHHHHCCHHE
Q ss_conf 23331100378742588899997424699702058578864442033245999--------------9999987378012
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD--------------MFEQAKNNSPCIV 244 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~--------------lf~~a~~~~p~ii 244 (647)
..-+.+||.||||||||+||+++|...+.||+.+.+.+...---..|..-+.. +|...+ +|+
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCC----EEE
T ss_conf 8599778779898777999999999838981899568998888820568887664257718984687334513----389
Q ss_pred EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC----------CCCCCCEEEEEECC-----CCCCCCHHHCCCCCC
Q ss_conf 063235641445578988626889889989985303----------23577829999629-----810088333165642
Q gi|254780545|r 245 FVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG----------FESSEGVILIAATN-----RPDVLDAALLRPGRF 309 (647)
Q Consensus 245 fiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg----------~~~~~~v~vi~aTn-----~~~~lD~al~RpgRf 309 (647)
|+|||+-.. ..+.|.||..|+. +.-..+.+|||+.| .-.-|.+|+++ ||
T Consensus 117 l~DEInra~--------------p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf 180 (329)
T COG0714 117 LLDEINRAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF 180 (329)
T ss_pred EEECCCCCC--------------HHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHC--CC
T ss_conf 987034589--------------88999999999726897079665337998789982686765788789988881--03
Q ss_pred CCEEEECHHHHHH-HHHHHHHH
Q ss_conf 3141000134788-99999998
Q gi|254780545|r 310 DRQITVPNPDIVG-REHILMVH 330 (647)
Q Consensus 310 d~~i~~~~P~~~~-r~~i~~~~ 330 (647)
-..++++.|+.+. ...++...
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8877648997388999998736
No 66
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=9.7e-13 Score=111.18 Aligned_cols=154 Identities=26% Similarity=0.437 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC---
Q ss_conf 698898528899999999987433567664201233--311003787425888999974246-------99702058---
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS--- 213 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~--- 213 (647)
-|.+|.|++++|.-|.= .+--| .|+|+.||||||||++||++++=. ++||-+..
T Consensus 6 Pfs~IvGQe~~K~AL~l--------------aav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVL--------------TAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CHHHHCCCHHHHHHHHH--------------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCC
T ss_conf 92376493999999999--------------7727898608997899865999999999728995110367556677421
Q ss_pred ---------------HHHHHHHHHHCCHHHHH------H-------HH---HHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf ---------------57886444203324599------9-------99---99987378012063235641445578988
Q gi|254780545|r 214 ---------------GSDFVELFVGVGASRVR------D-------MF---EQAKNNSPCIVFVDEIDAVGRHRGIGLGG 262 (647)
Q Consensus 214 ---------------~s~~~~~~~g~g~~~vr------~-------lf---~~a~~~~p~iifiDeida~~~~r~~~~~~ 262 (647)
..-|+++=.|.++.|+- . .| ..|+++ --|+|+|||--+-
T Consensus 72 ~~~~~~~~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah-~GVLylDEinll~--------- 141 (334)
T PRK13407 72 CPEWAEVSSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARAN-RGYLYIDEVNLLE--------- 141 (334)
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCC-CCEEEEECHHHCC---------
T ss_conf 133431145553448998767899999866447421888862698778860543402-8867872053333---------
Q ss_pred CCHHHHHHHHHHHHHHC---------CCCC--CCCEEEEEECCCCC-CCCHHHCCCCCCCCEEEECHH-HHHHHHHHHHH
Q ss_conf 62688988998998530---------3235--77829999629810-088333165642314100013-47889999999
Q gi|254780545|r 263 GNDEREQTLNQLLVEMD---------GFES--SEGVILIAATNRPD-VLDAALLRPGRFDRQITVPNP-DIVGREHILMV 329 (647)
Q Consensus 263 ~~~e~~~~ln~ll~~md---------g~~~--~~~v~vi~aTn~~~-~lD~al~RpgRfd~~i~~~~P-~~~~r~~i~~~ 329 (647)
+.+++.||.-|. |.+- ....++|||-|=.+ .|-|.|+- ||+-++.++.| |.+.|.+|++.
T Consensus 142 -----~~vld~Ll~~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg~Lrp~lLD--Rf~l~v~v~~~~~~~~r~eiv~r 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVITR 214 (334)
T ss_pred -----HHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCCCCCCCHHHHH--HHCEEEEECCCCCHHHHHHHHHH
T ss_conf -----88999999887169579997763460366265898208887775989983--61006871487887776688999
Q ss_pred H
Q ss_conf 8
Q gi|254780545|r 330 H 330 (647)
Q Consensus 330 ~ 330 (647)
-
T Consensus 215 ~ 215 (334)
T PRK13407 215 R 215 (334)
T ss_pred H
T ss_conf 9
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.6e-12 Score=108.04 Aligned_cols=207 Identities=21% Similarity=0.342 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E-----
Q ss_conf 4225698898528899999999987433567664201233311003787425888999974246997-------0-----
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F----- 209 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f----- 209 (647)
+|+ +|+||.|++.+++.|+..+. -.++|.+.||+||+|+|||.+|+++|....+- .
T Consensus 11 RPk-~F~eIIGQe~iv~~L~nAI~-----------~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~s 78 (613)
T PRK05896 11 RPH-NFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (613)
T ss_pred CCC-CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 799-76552382999999999998-----------499762277558998488999999999966999999998888878
Q ss_pred ----ECCCHHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ----2058578864442--0332459999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r 210 ----FTISGSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 210 ----~~~~~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
..-+..+++++=. .-|-..||++-+.+ ...| =|+.|||.|-+- .+.-|.||--+
T Consensus 79 C~~I~~g~h~DviEIdaasn~gIDeIReLie~~-~~~P~~gkyKV~IIDEah~Ln--------------~~AaNALLKtL 143 (613)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNI-NYLPTTFKYKVYIIDEAHMLS--------------TSAWNALLKTL 143 (613)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHC
T ss_conf 999856999986884065557889999999970-858757994599981622179--------------99999999853
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 03235778299996298100883331-65642314100013478899999998548877732110245441203798999
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADL 357 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi 357 (647)
. ++...++.|-+|+.|+.|-|-++ |--|||.+ .++..+...|..-.- .-.++..+++ -+..+|+...| |-.|-
T Consensus 144 E--EPP~~viFIL~Ttep~KLLpTIlSRCQrf~Fk-ri~~~~I~~~L~~I~-~kE~i~ie~~-AL~~Ia~~adG-s~RDA 217 (613)
T PRK05896 144 E--EPPKHVVFIFATTEFQKIPLTIISRCQRYNFK-KLNNSELQELLKSIA-KKEKIKIEDN-AIDKIADLADG-SLRDG 217 (613)
T ss_pred C--CCCCCCEEEEEECCHHHCCHHHHHCCCCEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf 4--89878379998288154937664035500178-899899999999999-9739987899-99999997688-48789
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999998764553202421045689997
Q gi|254780545|r 358 RNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
-+++.+.... ....|+.+|+.+-+
T Consensus 218 lslLdQ~~~~----~~~~it~~~v~~~~ 241 (613)
T PRK05896 218 LSILDQLSTF----KNKKIDIEDINKTF 241 (613)
T ss_pred HHHHHHHHHH----CCCCCCHHHHHHHH
T ss_conf 8899999983----56886299999996
No 68
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.5e-12 Score=105.70 Aligned_cols=204 Identities=27% Similarity=0.437 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----------CCC-
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702-----------058-
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----------TIS- 213 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----------~~~- 213 (647)
+|+||.|++.++..|+..+. -.|+|...||+||.|||||-+||++|....|.-= ...
T Consensus 16 ~F~EVIGQe~Vv~tL~nAI~-----------~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~ 84 (718)
T PRK07133 16 KFDEIKGQDHIIETLKNIIK-----------SGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFN 84 (718)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCC
T ss_conf 75442285999999999997-----------4997505862389986889999999999679999999997702143047
Q ss_pred -HHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -578864442--0332459999999987378-----01206323564144557898862688988998998530323577
Q gi|254780545|r 214 -GSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE 285 (647)
Q Consensus 214 -~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~ 285 (647)
..+++|+=. .-|...||+|-+.++ .+| =|..|||.+-+- .+.-|.||--+. ++..
T Consensus 85 ~s~DViEIDAASn~gVDdIReLie~v~-y~P~~gkYKVyIIDEvHMLS--------------~~AfNALLKtLE--EPP~ 147 (718)
T PRK07133 85 NNLDIIEMDAASNNGVDEIRELRENVK-NLPQISKYKIYIIDEVHMLS--------------KSAFNALLKTLE--EPPK 147 (718)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHC--CCCC
T ss_conf 898737754556688899999999825-58877872499996620079--------------999999998502--7987
Q ss_pred CEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8299996298100883331-656423141000134788999999985488777321102454412037989999999998
Q gi|254780545|r 286 GVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEA 364 (647)
Q Consensus 286 ~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eA 364 (647)
.|+.|-||..|+.|.+.++ |.-|||.+ .++..+...|..-+- .-.++..+++ -+..+|+...| |-.|--.++.++
T Consensus 148 hvvFILaTTep~KIP~TIlSRCQrFdFk-rI~~~~I~~~L~~I~-~kE~I~~e~e-AL~lIA~~a~G-SmRDAlSlLDQv 223 (718)
T PRK07133 148 HVIFILATTDVQKIPLTILSRVQRFNFR-RISEDVIVHQLENIL-EKEKIKYEKN-ALKLIASLASG-SLRDALSIADQV 223 (718)
T ss_pred CCEEEEEECCHHHCCHHHHHCCEEEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 8279997088254848774122033588-899999999999999-9859977899-99999997688-488898799999
Q ss_pred HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 764553202421045689997
Q gi|254780545|r 365 ALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 365 a~~a~r~~~~~i~~~dl~~A~ 385 (647)
...+ ...||..++.+.+
T Consensus 224 ~~f~----ng~it~k~v~~~~ 240 (718)
T PRK07133 224 SIFG----NGNITLKNVNELF 240 (718)
T ss_pred HHHC----CCCCCHHHHHHHH
T ss_conf 9854----8987299999996
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.44 E-value=5.3e-13 Score=113.06 Aligned_cols=130 Identities=35% Similarity=0.458 Sum_probs=95.5
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCC---EECCCHHHHHHHH--------------HHCCHHHHHHHHHHHHHHCCHH
Q ss_conf 3311003787425888999974246997---0205857886444--------------2033245999999998737801
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVP---FFTISGSDFVELF--------------VGVGASRVRDMFEQAKNNSPCI 243 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~---f~~~~~s~~~~~~--------------~g~g~~~vr~lf~~a~~~~p~i 243 (647)
+..++++||||||||.+++++|.....+ ++.++++...+.+ ...+...++.+++.|++..|+|
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 97899999997029999999998726689968998759989888987653000112210519999999999998449989
Q ss_pred EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHH
Q ss_conf 2063235641445578988626889889989985303235778299996298100883331656423141000134
Q gi|254780545|r 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD 319 (647)
Q Consensus 244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~ 319 (647)
|||||++.+........ ....................+|+++|.....+++++|+ |||.++.+..++
T Consensus 82 iiiDei~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~vi~~~n~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (148)
T smart00382 82 LILDEITSLLDAEQEAL--------LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148 (148)
T ss_pred EEEECCHHHCCCCCHHH--------HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCC-CCCEEEEEECCC
T ss_conf 99827502147620799--------99999999851765789989999569952249877074-478799982879
No 70
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=7.8e-12 Score=104.63 Aligned_cols=204 Identities=26% Similarity=0.426 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE----------------
Q ss_conf 6988985288999999999874335676642012333110037874258889999742469970----------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF---------------- 209 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f---------------- 209 (647)
+|+||.|++.++..|+..+. ..++|...||+||+|||||.+|+++|....+.=
T Consensus 12 ~F~evIGQe~iv~~L~nAi~-----------~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i 80 (523)
T PRK08451 12 HFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAA 80 (523)
T ss_pred CHHHCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 65440494999999999998-----------5996715875789986889999999999759999998988878889998
Q ss_pred ECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 20585788644420--332459999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r 210 FTISGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 210 ~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
..-+.+|++|+=.+ -|-..||++-+.+. .+| =|+.|||.|.+- .+.-|.||--+. +
T Consensus 81 ~~g~hpDViEiDaasn~gID~IReLie~~~-~~P~~gryKV~IIDEah~Lt--------------~~A~NALLKTLE--E 143 (523)
T PRK08451 81 LEGRHIDIIEMDAASNRGIDDIRNLIEQTK-YKPSMARFKIFIIDEVHMLT--------------KEAFNALLKTLE--E 143 (523)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHCC--C
T ss_conf 648999855105533368999999999723-58867972799982603048--------------999999999703--8
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 5778299996298100883331-656423141000134788999999985488777321102454412037989999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~ 361 (647)
....|+.|-+|+.|+.|-+-++ |--||+.+ .++..+...|..-+- .-.++..+++ -+..+|+...| |-.|-..++
T Consensus 144 PP~~vvFILaTTep~KLp~TIlSRCQ~f~Fk-~I~~~~I~~~L~~I~-~~E~i~~e~~-AL~~IA~~a~G-slRDalslL 219 (523)
T PRK08451 144 PPSYVKFILATTDPLKLPATILSRTQHFRFK-QIPQNSIISHLKTIL-NKEGVSYEPE-ALEILARSGSG-SLRDTLTLL 219 (523)
T ss_pred CCCCCEEEEECCCHHHCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHH
T ss_conf 9878379997599476848887420311033-799999999999999-9839987999-99999997789-486898799
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998764553202421045689997
Q gi|254780545|r 362 NEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 362 ~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
.+|..+. ...|+.+++.+-+
T Consensus 220 dQ~i~~~----~~~i~~~~v~~~l 239 (523)
T PRK08451 220 DQAIIFC----KNAITESKVADML 239 (523)
T ss_pred HHHHHHC----CCCCCHHHHHHHH
T ss_conf 9999847----9987799999985
No 71
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.7e-12 Score=109.35 Aligned_cols=164 Identities=30% Similarity=0.449 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH---
Q ss_conf 8898528899999999987433567664201233311003787425888999974246997020585------7886---
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV--- 218 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~--- 218 (647)
+|--|++++|+.+.|...-. .+-.++.+. =+.|+||||+|||-|++.||...+-+|+-+|- +++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~---~l~~~~kGp---ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQ---KLTKKLKGP---ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHH---HHHCCCCCC---EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCC
T ss_conf 35567116899999999999---861467885---799978998870118999999958977999547654277753553
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHCC-----CCCC--------
Q ss_conf 4442033245999999998737801206323564144-5578988626889889989985303-----2357--------
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRH-RGIGLGGGNDEREQTLNQLLVEMDG-----FESS-------- 284 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~-r~~~~~~~~~e~~~~ln~ll~~mdg-----~~~~-------- 284 (647)
.-|+|.=+-||=+-..+|+..-| ++.+||||-++.. ||. --..||.-+|- |..+
T Consensus 397 RTYIGaMPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-----------PaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-----------PASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCC-EEEEECHHHCCCCCCCC-----------HHHHHHHHCCHHHCCCHHHCCCCCCCCH
T ss_conf 12335687289999998677687-47864033316777788-----------6888886269765676122201676644
Q ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 782999962981008833316564231410001347889999999854
Q gi|254780545|r 285 EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 285 ~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
+.|++||+.|..+.+..+||- |.+ .|.+.==...+..+|-+.||=
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred HHEEEEEECCCCCCCCHHHHC--CEE-EEEECCCCHHHHHHHHHHHCC
T ss_conf 325888603751329867843--030-564268886999999998445
No 72
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.4e-12 Score=110.00 Aligned_cols=205 Identities=28% Similarity=0.424 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE--------------
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699702--------------
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------------- 210 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------------- 210 (647)
.+|+||.|+++++..|+..+. ..++|...||+||+|||||.+|+++|...+|.--
T Consensus 13 ~~F~dvvGQ~~v~~~L~nai~-----------~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06674 13 QKFEDVVGQEHVTKTLQNALL-----------QEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLG 81 (563)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 976552480999999999998-----------499650343128998689999999999857999999887766878999
Q ss_pred --CCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf --0585788644420--332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 211 --TISGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 211 --~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
.-+.+|++|+=.. -|-..||++-+.++ .+| -|+.|||.|-+- .+.-|.||--+.
T Consensus 82 i~~g~~~DviEiDaasn~gVd~IR~i~~~v~-~~P~~~~yKV~IIDeah~Lt--------------~~A~NALLKtLE-- 144 (563)
T PRK06674 82 ITNGSISDVLEIDAASNNGVDEIRDIRDKVK-FAPSAVEYKVYIIDEVHMLS--------------IGAFNALLKTLE-- 144 (563)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHH--
T ss_conf 8558998779852555578799999999826-48867873799985456379--------------999999999863--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 35778299996298100883331-65642314100013478899999998548877732110245441203798999999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
+....|+.|-+|+.|+.|-|.++ |--|||.+ .++.-+...|..-+- .-.++..+++ -+..+|+...| |=.|--++
T Consensus 145 EPP~~viFILaTtep~ki~~TI~SRCQrf~F~-ri~~~~i~~rL~~I~-~~E~i~~~~~-aL~~Ia~~a~G-smRDAlsi 220 (563)
T PRK06674 145 EPPGHVIFILATTEPHKIPPTIISRCQRFDFR-RISVNDIVERLSTVV-TNEGTQVEDE-ALQIIARAADG-GMRDALSL 220 (563)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHEEEECC-CCCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
T ss_conf 88756499996599475847887331031278-899999999999999-9849998788-99999997699-78899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9998764553202421045689997
Q gi|254780545|r 361 VNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 361 ~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
+.++.-. +...|+.+|..+.+
T Consensus 221 LdQ~~s~----~~~~i~~~~v~~~l 241 (563)
T PRK06674 221 LDQAISF----SDERVTTEDVLAVT 241 (563)
T ss_pred HHHHHHH----CCCCCCHHHHHHHH
T ss_conf 9999971----59976899999986
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.5e-12 Score=106.34 Aligned_cols=221 Identities=24% Similarity=0.369 Sum_probs=141.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC--
Q ss_conf 000011242256988985288999999999874335676642012333110037874258889999742469970205--
Q gi|254780545|r 135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI-- 212 (647)
Q Consensus 135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-- 212 (647)
|+.|.|. +|+|+.|++.+...|+..+. ..++|...||+||+|||||-.||.+|...+|.-...
T Consensus 12 a~KyRP~----~f~~liGQ~~~~~~l~n~i~-----------~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~ 76 (507)
T PRK06645 12 ARKYRPS----NFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred EECCCCC----CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3200799----76562393999999999997-----------39966347745879978899999999996799988889
Q ss_pred -------CHH-----------HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf -------857-----------8864442--0332459999999987378-----01206323564144557898862688
Q gi|254780545|r 213 -------SGS-----------DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDER 267 (647)
Q Consensus 213 -------~~s-----------~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~ 267 (647)
.+. +++|+=. --|-..||++-+.++ .+| =|..|||.+-+-
T Consensus 77 ~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~-~~p~~~~~kv~iidE~hmls-------------- 141 (507)
T PRK06645 77 TTIKTCEKCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAE-YKPLQGKHKIFIIDEVHMLS-------------- 141 (507)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCEEEEEECCHHHCC--------------
T ss_conf 988888887678998658999859963788888899999986355-17876743589952142248--------------
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHH-HHHHHHCCCCCCCCCCHHHH
Q ss_conf 9889989985303235778299996298100883331-656423141000134788999-99998548877732110245
Q gi|254780545|r 268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREH-ILMVHSRNVPLAPNVILKTI 345 (647)
Q Consensus 268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~-i~~~~~~~~~~~~~~d~~~l 345 (647)
.+.-|.||--|+ +....|+.|-||+.|+.+.+.++ |--|||.+ .++..+...|.. |.+ -.+...+++ -+..+
T Consensus 142 ~~a~nallktlE--epp~~~~Fi~atte~~kip~ti~srcq~f~~~-~i~~~~i~~~l~~i~~--~E~~~~~~~-al~~i 215 (507)
T PRK06645 142 KGAFNALLKTLE--EPPPHIIFIFATTEVQKIPATIISRCQRYDLR-RLSFEEIFKLLEYITK--QENLKADIE-ALRII 215 (507)
T ss_pred HHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHCEEEEEE-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHH
T ss_conf 999999999742--78644389997485364837888543278754-5997999999999999--768777789-99999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 44120379899999999987645532024210456899975013686556766
Q gi|254780545|r 346 ARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTA 398 (647)
Q Consensus 346 a~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~ 398 (647)
|+...| |=.|--+++.+|..+.. .+...|+.+++.+ |.|..-++..
T Consensus 216 a~~a~G-s~RDalslldqai~~~~-~~~~~I~~~~V~~-----MLGl~Drs~l 261 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASMSA-KSDNIISPQVINQ-----MLGLVDLSVI 261 (507)
T ss_pred HHHCCC-CHHHHHHHHHHHHHHHC-CCCCCCCHHHHHH-----HHCCCCHHHH
T ss_conf 985599-86789999999999754-8987026999999-----8389985679
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43 E-value=1.3e-12 Score=110.28 Aligned_cols=159 Identities=24% Similarity=0.390 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC----------CCCCEECCCHH
Q ss_conf 69889852889999999998743356766420123331100378742588899997424----------69970205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE----------ANVPFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e----------~~~~f~~~~~s 215 (647)
+.+-|.|-+ +|++.+++.|-.. --...+|.|.||+|||-++..+|-. .++-.++.+-+
T Consensus 171 klDpviGRd---~Ei~r~i~IL~Rr---------~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg 238 (852)
T TIGR03346 171 KLDPVIGRD---EEIRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred CCCCCCCCH---HHHHHHHHHHHHH---------CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHH
T ss_conf 999773836---9999999999873---------2489721279998799999999999866999978851851275288
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
.++ ..|.|+=+.|++.+.+..++. .|.|+|||||..+-+.-+ ..|+.|-. ..|-..| .+..+=+|||
T Consensus 239 ~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~--~~G~~DAa-NlLKPaL-------arGelr~IgA 308 (852)
T TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK--AEGAMDAG-NMLKPAL-------ARGELHCIGA 308 (852)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf 775215300789999999999998589987999612555326887--66641067-7743787-------4798559982
Q ss_pred CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 29810-----08833316564231410001347889999999
Q gi|254780545|r 293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
|-.-+ .=|+||-| ||. .|.|.-|+.+.-..||+-
T Consensus 309 TT~~EYrk~iEkD~AL~R--RFq-~I~V~EPs~e~t~~IL~g 347 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRG 347 (852)
T ss_pred CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHH
T ss_conf 789999988322688997--377-120479986899999997
No 75
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.42 E-value=2.3e-13 Score=115.69 Aligned_cols=284 Identities=23% Similarity=0.334 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s 215 (647)
+|..|.|+|-|-+.|. +++--.-|..||||||||.|||.-||-+--|+ +.||+.+.|+
T Consensus 153 ~f~EiVGQerAI~aLl------------aK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGt 220 (616)
T TIGR02903 153 AFSEIVGQERAIKALL------------AKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGT 220 (616)
T ss_pred CCCCCCCHHHHHHHHH------------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC
T ss_conf 6764333468999999------------7631888660785573388478999998762136874476113785751576
Q ss_pred HHH-------HHHHH-------CCHHHHHHHHHHHHHH------------CCHHEEHHHHH---HHH---------CCCC
Q ss_conf 886-------44420-------3324599999999873------------78012063235---641---------4455
Q gi|254780545|r 216 DFV-------ELFVG-------VGASRVRDMFEQAKNN------------SPCIVFVDEID---AVG---------RHRG 257 (647)
Q Consensus 216 ~~~-------~~~~g-------~g~~~vr~lf~~a~~~------------~p~iifiDeid---a~~---------~~r~ 257 (647)
.+. .-..| +|++| | .|..- ---|+|||||= .+- .||-
T Consensus 221 TLRWDPREvTNPLLGSVHDPIYQGa~R--D---LAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV 295 (616)
T TIGR02903 221 TLRWDPREVTNPLLGSVHDPIYQGARR--D---LAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV 295 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCH--H---HCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEE
T ss_conf 266774101477677625765567640--1---10478798989871004775676502112227876324443226436
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECC-CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC-
Q ss_conf 78988626889889989985303235--77829999629-810088333165642314100013478899999998548-
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDGFES--SEGVILIAATN-RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN- 333 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg~~~--~~~v~vi~aTn-~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~- 333 (647)
.-.++-.|+-+.-+-+-.-.+ |+. ....|+||||- .|+.+-|||+= |-- .|||.+-+-.+-.+|...-..+
T Consensus 296 ~F~SsYYDpdD~NvPkYIK~l--Fe~GAPADFvLIGATTr~P~eINpALRS--RCa-EvfFePL~p~dI~~Iv~~AA~kl 370 (616)
T TIGR02903 296 EFSSSYYDPDDENVPKYIKKL--FEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIKEIVLNAAEKL 370 (616)
T ss_pred EEEECCCCCCCCCCCHHHHHH--HCCCCCCCEEEECCCCCCHHHCCHHHHC--CCC-EEECCCCCHHHHHHHHHHHHHHC
T ss_conf 653212487537865588885--2268882568726615882440512330--143-13217988789999999988861
Q ss_pred -CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf -87773211024544120379899999999987645--------532024210456899975013686556766686677
Q gi|254780545|r 334 -VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA--------ARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEK 404 (647)
Q Consensus 334 -~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a--------~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek 404 (647)
..|+++| -+.+|++|. -|.---|++-.+--++ ...+.-.|+++|+.+-+. -||..+.+..
T Consensus 371 nv~L~~gV-~e~Ia~YTi--eGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~--------~sRl~Py~~~ 439 (616)
T TIGR02903 371 NVKLAEGV-EELIARYTI--EGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQ--------ISRLSPYEKV 439 (616)
T ss_pred CCCCCCCH-HHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH--------HCCCCCHHHC
T ss_conf 77000364-878721471--311222346546767653045556777742661867776775--------3045750112
Q ss_pred HHHHHHHHHHHH----HHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHH
Q ss_conf 899999999999----9985058773234322014555640564002443226899999999999
Q gi|254780545|r 405 KITAYHEAGHAV----VACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTIL 465 (647)
Q Consensus 405 ~~vAyHEAGHAl----va~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~ 465 (647)
+.-+-.|.||-. .+| +.-.-.|+-+.--.|...-|...|. +.-.+|+|+-+++-..|.
T Consensus 440 ~~~~~~EvG~vFGLGV~gy-~GS~lEIEa~aF~A~~~GkG~~RfN--dTAGSMaKDSvFNAasvi 501 (616)
T TIGR02903 440 KASDTYEVGHVFGLGVSGY-LGSVLEIEAVAFEAKEKGKGTVRFN--DTAGSMAKDSVFNAASVI 501 (616)
T ss_pred CCCCCCCEEEEEECCCCCC-CCCEEEEEEEEECCCCCCCEEEEEE--CCCCCCHHHHHHHHHHHH
T ss_conf 4688863046870421210-0233355504423778995058861--565530357789889998
No 76
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.3e-11 Score=103.09 Aligned_cols=203 Identities=25% Similarity=0.320 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC-----------
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699702058-----------
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS----------- 213 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~----------- 213 (647)
.+|+||.|++.++..|+..+. ..++|...||+||+|||||.+|+++|....+.--.-.
T Consensus 14 ~~F~dvVGQ~~vv~~L~nai~-----------~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~ 82 (462)
T PRK06305 14 QTFSEILGQDAVVTVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICK 82 (462)
T ss_pred CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 987660490999999999998-----------499762343038998599999999999967999988889887668889
Q ss_pred ------HHHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ------578864442--0332459999999987378-----012063235641445578988626889889989985303
Q gi|254780545|r 214 ------GSDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG 280 (647)
Q Consensus 214 ------~s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg 280 (647)
..|++|+-. .-|-..||+|-+.++ .+| -|+.|||.|.+- .+.-|.||--|.
T Consensus 83 ~I~~g~~~DViEiDaAs~~gVddIRel~e~v~-~~P~~~~yKVyIIDEvhmLs--------------~~AfNALLKtLE- 146 (462)
T PRK06305 83 EISSGTSLDVIEIDGASHRGIEDIRQINETVL-FTPSKSQYKIYIIDEVHMLT--------------KEAFNSLLKTLE- 146 (462)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHH-
T ss_conf 98638999868643553446689999997710-08867750599981521179--------------999999999861-
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 235778299996298100883331-656423141000134788999999985--48877732110245441203798999
Q gi|254780545|r 281 FESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADL 357 (647)
Q Consensus 281 ~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi 357 (647)
+....|+.|-||+.|+.|-+.++ |--|||.+ .++.-+...| |+.-+ .++..+++ -+..||+...| |=.|-
T Consensus 147 -EPP~~v~FILaTTe~~KIp~TIlSRCQrf~F~-~i~~~~I~~~---L~~I~~~E~i~~e~~-AL~lIA~~a~G-smRDA 219 (462)
T PRK06305 147 -EPPQHVKFFLATTEIHKIPGTILSRCQKMHLK-RIPEETIIDK---LALIAQQDGIETSRE-ALLPIARAAQG-SLRDA 219 (462)
T ss_pred -CCCCCEEEEEEECCHHHCCHHHHHHHHEEECC-CCCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf -89877499998188142854787654023325-7999999999---999999839985999-99999998589-58789
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999998764553202421045689997
Q gi|254780545|r 358 RNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
.++...+.- -+...|+.+++.+.+
T Consensus 220 lslLDQ~i~----~~~~~it~~~V~~~l 243 (462)
T PRK06305 220 ESLYDYVVG----LFPKSLSPDTVAKAL 243 (462)
T ss_pred HHHHHHHHH----HCCCCCCHHHHHHHH
T ss_conf 999999998----479986899999986
No 77
>KOG2004 consensus
Probab=99.41 E-value=7.8e-13 Score=111.85 Aligned_cols=163 Identities=28% Similarity=0.474 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHH-
Q ss_conf 8898528899999999987--433567664201233311003787425888999974246997020585------7886-
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDF--LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFV- 218 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~--l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~- 218 (647)
.|--|++++|+.+.|.+.- |++. ..+ +=+-|+||||.|||-+||.||...+--||-.|- +++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs-----~qG---kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004 411 EDHYGMEDVKERILEFIAVGKLRGS-----VQG---KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC-----CCC---CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCC
T ss_conf 6530168899999999998751466-----788---37998689987732189999998487469985366342776425
Q ss_pred --HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC------------
Q ss_conf --444203324599999999873780120632356414455789886268898899899853032357------------
Q gi|254780545|r 219 --ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS------------ 284 (647)
Q Consensus 219 --~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~------------ 284 (647)
.-|||.=+-|+=+...+.+-.-| ++.|||||-+| ||. .| | --..||.-||- +.|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~--qG--D----PasALLElLDP-EQNanFlDHYLdVp~ 550 (906)
T KOG2004 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGH--QG--D----PASALLELLDP-EQNANFLDHYLDVPV 550 (906)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCCC-EEEEEHHHHHC--CCC--CC--C----HHHHHHHHCCH-HHCCCHHHHCCCCCC
T ss_conf 4211001488489999986177886-58853223417--887--79--8----68999874396-535534542026642
Q ss_pred --CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf --7829999629810088333165642314100013478899999998548
Q gi|254780545|r 285 --EGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN 333 (647)
Q Consensus 285 --~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~ 333 (647)
+.|+.||+.|..|.+.|+||- |.+ .|+++==..++..+|-+-||-.
T Consensus 551 DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004 551 DLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred CHHHEEEEEECCCCCCCCHHHHH--HHH-EEECCCCCHHHHHHHHHHHHHH
T ss_conf 11106889853644569856641--223-2203672279899999984125
No 78
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=5.8e-12 Score=105.58 Aligned_cols=203 Identities=24% Similarity=0.302 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------CC-----
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699702-------05-----
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------TI----- 212 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------~~----- 212 (647)
.+|+||.|++.++..|+..+. -.++|...||+||+|||||-+|+++|....+..- ..
T Consensus 13 ~~F~dvvGQe~vv~~L~nai~-----------~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~ 81 (560)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIE-----------KNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKS 81 (560)
T ss_pred CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 865440394999999999997-----------499774366328998789999999999965999999888878878888
Q ss_pred ----CHHHHHHHHHH--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ----85788644420--332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 213 ----SGSDFVELFVG--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 213 ----~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
+..+++|+-.. -|-..||++-+.++ .+| -|+.|||.|.+- .+.-|.||--|.
T Consensus 82 i~~g~~~DviEidaasn~~VddIR~l~e~v~-~~P~~~~yKV~IIDEahmLt--------------~~A~NALLKtLE-- 144 (560)
T PRK06647 82 IDNDSSLDVIEIDGASNTSVQDVRQIKEEIM-FPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIE-- 144 (560)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHH--
T ss_conf 7459998757643645488899999999863-28766870699964656559--------------999999999863--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
+....++.|-|||.|+.|-|.++ |--||+.+ .++.-+...| |+.-+ .+...+++ -+..+|+...| |=.|--
T Consensus 145 EPP~~~~FILaTte~~KI~~TI~SRCQ~f~Fk-~i~~~~I~~~---L~~I~~~E~i~~e~~-AL~lIa~~a~G-s~RDal 218 (560)
T PRK06647 145 EPPPYIVFIFATTEVHKLPATIKSRCQHFNFR-LLSLEKIYEM---LKKVCLEDDIKYEDE-ALKWIAYKSGG-SVRDAY 218 (560)
T ss_pred CCCCCEEEEEECCCHHHCHHHHHHHHEEEECC-CCCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHH
T ss_conf 48875599997799476848999651041055-5999999999---999998679887999-99999997789-588899
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999998764553202421045689997
Q gi|254780545|r 359 NLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 359 ~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
++..++... +...|+.+++.+-+
T Consensus 219 slldq~i~~----~~~~i~~~~v~~~l 241 (560)
T PRK06647 219 TLFDQIVSF----SNSDITLEQIRSKM 241 (560)
T ss_pred HHHHHHHHC----CCCCCCHHHHHHHH
T ss_conf 999999960----79977899999986
No 79
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.38 E-value=3.8e-12 Score=106.90 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CC-------CEECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246---99-------70205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NV-------PFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~-------~f~~~~~s 215 (647)
+++-|.|-++ |++.+++.|-. |--...+|.|+||+|||-++..+|... .| -.++.+-+
T Consensus 176 kldpvIGRd~---EI~r~i~IL~R---------R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg 243 (857)
T PRK10865 176 KLDPVIGRDE---EIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CCCCCCCCHH---HHHHHHHHHHC---------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf 9998858299---99999999702---------57899758789998899999999999983899978816902473388
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
.++ ..|.|+=+.|++.+.+...+. .++|+|||||..+-..-+ ..|+.|-. ..|-..| .+..+=+|||
T Consensus 244 ~L~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~--~~G~~Daa-NlLKPaL-------aRGelr~IGA 313 (857)
T PRK10865 244 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK--ADGAMDAG-NMLKPAL-------ARGELHCVGA 313 (857)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf 786147652117999999999998478986999734354336887--77753478-8867887-------3798549994
Q ss_pred CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 29810-----088333165642314100013478899999998
Q gi|254780545|r 293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
|-.-+ .=|+||-| ||. .|.|.-|+.+.-..||+-.
T Consensus 314 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~e~ti~ILrgl 353 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred CCHHHHHHHCCCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf 589999987134588998--537-1006899879999999988
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.37 E-value=2.1e-12 Score=108.70 Aligned_cols=159 Identities=28% Similarity=0.471 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH----HHHHHHCCCCCC-------EECCCH
Q ss_conf 698898528899999999987433567664201233311003787425888----999974246997-------020585
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL----LARAVAGEANVP-------FFTISG 214 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl----la~a~a~e~~~~-------f~~~~~ 214 (647)
+.|=+.|-++.- +..+..|-...|= .=||+|-||.|||= ||+.|+--..|| .|+.+-
T Consensus 206 kiDPLIGRE~El---eRtiQvLCRR~KN---------NPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm 273 (774)
T TIGR02639 206 KIDPLIGREDEL---ERTIQVLCRRKKN---------NPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM 273 (774)
T ss_pred CCCCCCCCHHHH---HHHHHHHCCCCCC---------CCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH
T ss_conf 878734566887---4233320345678---------8720448886448999999998641564670024783454043
Q ss_pred HHHH--HHHHHCCHHHHHHHHHHHHHHCCH-HEEHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 7886--444203324599999999873780-1206323564144557898862-68898899899853032357782999
Q gi|254780545|r 215 SDFV--ELFVGVGASRVRDMFEQAKNNSPC-IVFVDEIDAVGRHRGIGLGGGN-DEREQTLNQLLVEMDGFESSEGVILI 290 (647)
Q Consensus 215 s~~~--~~~~g~g~~~vr~lf~~a~~~~p~-iifiDeida~~~~r~~~~~~~~-~e~~~~ln~ll~~mdg~~~~~~v~vi 290 (647)
..++ .+|-|.=+.|++.+-++-.+..-+ |+|||||..|=..=+ .+||+ |-. ..|=.-| .+..+=+|
T Consensus 274 G~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGA--TSGGsmDAS-NLLKPaL-------~~G~iRCI 343 (774)
T TIGR02639 274 GTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGA--TSGGSMDAS-NLLKPAL-------ASGKIRCI 343 (774)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCC--CCCHHHHHH-HHHHHHH-------HCCCEEEE
T ss_conf 4564102454247899999999985289995466411010331787--875155244-3211253-------07877862
Q ss_pred EECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 96298100-----8833316564231410001347889999999
Q gi|254780545|r 291 AATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 291 ~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
|||-+-+- =|.||-| ||- +|.|+=|+.++-.+||+-
T Consensus 344 GsTTy~EY~~~FeKDrALsR--RFQ-KIDv~EPs~eet~~ILkG 384 (774)
T TIGR02639 344 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKG 384 (774)
T ss_pred CCCCHHHHHCHHHCCCCCCC--CCC-EECCCCCCHHHHHHHHHH
T ss_conf 26524864111010202165--423-311795788899999986
No 81
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.37 E-value=5.2e-11 Score=98.66 Aligned_cols=225 Identities=24% Similarity=0.322 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHCC-------CCCC-EE--CCCH---
Q ss_conf 89852889999999998743356766420-123331100378742588899997424-------6997-02--0585---
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLG-GRIPHGVLLVGPPGTGKTLLARAVAGE-------ANVP-FF--TISG--- 214 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g-~~~p~g~ll~GppGtGKTlla~a~a~e-------~~~~-f~--~~~~--- 214 (647)
.+.|=|+--++|. ..|+. -+. +..|.-|++|||+|||||+-++.+..+ .++. |- ++.+
T Consensus 18 ~i~hRdeqI~~l~---~~L~~-----~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~ 89 (383)
T TIGR02928 18 RIVHRDEQIEELA---KALRP-----ILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQIL 89 (383)
T ss_pred CCCCCHHHHHHHH---HHHHH-----HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 4668678999999---99887-----506748987258878889878899999999999986226997158999778546
Q ss_pred -------HHHHHHH----H-------HCCHH-HHHHHHHHHH-HHCCHHEEH-HHHHHHHCCCCCCCCCCCHH--HHHHH
Q ss_conf -------7886444----2-------03324-5999999998-737801206-32356414455789886268--89889
Q gi|254780545|r 215 -------SDFVELF----V-------GVGAS-RVRDMFEQAK-NNSPCIVFV-DEIDAVGRHRGIGLGGGNDE--REQTL 271 (647)
Q Consensus 215 -------s~~~~~~----~-------g~g~~-~vr~lf~~a~-~~~p~iifi-Deida~~~~r~~~~~~~~~e--~~~~l 271 (647)
+++++.+ . |...+ --+.||+.-. +....+||| ||||.+. ++.. |+ -.++|
T Consensus 90 ~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~------d~PAyS~~L 162 (383)
T TIGR02928 90 DTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDD------DDPAYSKLL 162 (383)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCC------CCHHHHHHH
T ss_conf 846999999999851577888898877878999999999983201887999862310221-5888------880787885
Q ss_pred HHHHHHH-CCCCCCCCEEEEEECCCC---CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH-CCCCCCCCCCH----
Q ss_conf 9899853-032357782999962981---00883331656423141000134788999999985-48877732110----
Q gi|254780545|r 272 NQLLVEM-DGFESSEGVILIAATNRP---DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS-RNVPLAPNVIL---- 342 (647)
Q Consensus 272 n~ll~~m-dg~~~~~~v~vi~aTn~~---~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~-~~~~~~~~~d~---- 342 (647)
=+|+--- .|=-.+..|-|||=||.. +.|||=..= -=-.+.|.|++=|.++-.+||+-=. + +.+.+++=-
T Consensus 163 Y~L~Ra~~~~~~~~~~vgvIgISND~~f~~~Ld~RVkS-sL~~eei~FpPYdA~eL~~IL~~R~v~-~AF~dGvl~d~VI 240 (383)
T TIGR02928 163 YQLSRARENGDLENAKVGVIGISNDLKFRENLDPRVKS-SLCEEEIVFPPYDAEELRDILENRAVE-KAFYDGVLDDGVI 240 (383)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEECCCHHHHHCCCCEEC-CCCCCCCEECCCCHHHHHHHHHHHHHH-HCCCCCCCCHHHH
T ss_conf 34331000357788534899986571436445753013-248740040798869999999720312-0336885462279
Q ss_pred ---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCC
Q ss_conf ---2454412037989999999998764553202421045689997501-368
Q gi|254780545|r 343 ---KTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKI-LMG 391 (647)
Q Consensus 343 ---~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv-~~G 391 (647)
..+|.+.+| +.-.==.|++.|.-.|-++|+..|+.+|+.+|.+++ -..
T Consensus 241 ~lcAA~aAq~hG-DAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~e~~PE~~ 292 (383)
T TIGR02928 241 PLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEEAQEKIPEVD 292 (383)
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 999998620678-7899999999876875315763100888999998322288
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.37 E-value=8.4e-12 Score=104.39 Aligned_cols=299 Identities=24% Similarity=0.315 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEE
Q ss_conf 242256988985288999999999874335676642012333110037874258889999742469----------9702
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFF 210 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~ 210 (647)
.+|+ .|+||.|+|+=-+.|+ ..|-+.=|..|.+|||||.|||=-||=+-.||. ..|+
T Consensus 59 ~RP~-SF~EIiGQe~GI~ALK------------AALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FV 125 (532)
T TIGR02902 59 TRPK-SFDEIIGQEEGIKALK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFV 125 (532)
T ss_pred CCCC-CCCCCCCCHHHHHHHH------------HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 6777-6332567355689999------------86068689638987886961789999999986508753789886689
Q ss_pred CCCHHH--HHH--------------HHHHCCHHHHHHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 058578--864--------------4420332459999-----9999873780120632356414455789886268898
Q gi|254780545|r 211 TISGSD--FVE--------------LFVGVGASRVRDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ 269 (647)
Q Consensus 211 ~~~~s~--~~~--------------~~~g~g~~~vr~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~ 269 (647)
-++++. |=| .|-|.|+-=+--+ =+-.|++ -=|+|||||=-|-+ =
T Consensus 126 EiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP--------------~ 190 (532)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHP--------------V 190 (532)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCH--------------H
T ss_conf 85051036021466665677615853337654578855758777632025-86551212466582--------------4
Q ss_pred HHHHHHHHHCC---------C-CCCCC----------------EEEEEEC-CCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf 89989985303---------2-35778----------------2999962-98100883331656423141000134788
Q gi|254780545|r 270 TLNQLLVEMDG---------F-ESSEG----------------VILIAAT-NRPDVLDAALLRPGRFDRQITVPNPDIVG 322 (647)
Q Consensus 270 ~ln~ll~~mdg---------~-~~~~~----------------v~vi~aT-n~~~~lD~al~RpgRfd~~i~~~~P~~~~ 322 (647)
-+|-||--|.- | +++.+ -=+|||| -.|+-|.|||+= | =-.|+|..-+.++
T Consensus 191 ~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRS--R-C~EIFFR~L~~EE 267 (532)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRS--R-CVEIFFRPLLKEE 267 (532)
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHC--C-CEEEEECCCCHHH
T ss_conf 353141133022200001235877786542789972067873401213336987767834650--5-2267716888789
Q ss_pred HHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999854887--77321102454412037989999999998764553202421045689997501368655676668
Q gi|254780545|r 323 REHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMT 400 (647)
Q Consensus 323 r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~ 400 (647)
-++|-|.-.+|.- ++++ -++.|++++ -||.|--||+.=||=.++-+||+.|..+|++.-++-
T Consensus 268 i~~iAk~AaeKIg~~l~~~-Al~~I~~Ya--~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~------------- 331 (532)
T TIGR02902 268 IKEIAKNAAEKIGLNLEKE-ALDLIAKYA--SNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES------------- 331 (532)
T ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHH--CCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH-------------
T ss_conf 9999876565304654754-799999874--054067789999731401288761205464455530-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCEEEEHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66778999999999999985058773234322014-55564056400244322-----6899999999999878988888
Q gi|254780545|r 401 EEEKKITAYHEAGHAVVACHVPKADPLHKATIIPR-GRALGMVMQLPEADRHS-----TTYVWMTSRLTILMGGRVAEEF 474 (647)
Q Consensus 401 ~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipR-g~alG~t~~~p~~d~~~-----~tk~~l~~~i~v~LgGRaAEei 474 (647)
+-|.|..+ .|++-.|+ |...|...+=|+.-..+ .++.+...+=.|-..|=+=||-
T Consensus 332 -----------------G~y~Pk~~--~k~~~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~ 392 (532)
T TIGR02902 332 -----------------GNYHPKPE--IKLSSEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEE 392 (532)
T ss_pred -----------------CCCCCCCC--EEECCCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECE
T ss_conf -----------------47877434--02078885356655446067755130234377660114884289988871000
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf 61368756523355899999999998624-888
Q gi|254780545|r 475 TFGEDNVTSGAMSDIEYATKLARVMVTQF-GFS 506 (647)
Q Consensus 475 ~fG~~~ittGAs~DL~~AT~iA~~mV~~~-GMs 506 (647)
+ |..+-+--..|-.+-+-+=+..|..++ ||.
T Consensus 393 ~-gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i~ 424 (532)
T TIGR02902 393 I-GGSGKSVRRKSSAKGSVENVLAVLKSVFNIN 424 (532)
T ss_pred E-CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1-7989615200224430889999999884788
No 83
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37 E-value=1.5e-11 Score=102.53 Aligned_cols=73 Identities=42% Similarity=0.621 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHC
Q ss_conf 988985288999999999874335676642012333110037874258889999742469--970205857886444203
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGV 224 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~ 224 (647)
=+-..|+.+|.+..--||+..|. |-.--||||+.||||||||-||-++|.|.| +||.++|||++.+.-+.-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCH
T ss_conf 88611249888762599999971-------76666179997899976889999999985899982150133223310008
Q ss_pred CH
Q ss_conf 32
Q gi|254780545|r 225 GA 226 (647)
Q Consensus 225 g~ 226 (647)
++
T Consensus 111 TE 112 (450)
T COG1224 111 TE 112 (450)
T ss_pred HH
T ss_conf 89
No 84
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=4.9e-12 Score=106.08 Aligned_cols=220 Identities=23% Similarity=0.398 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCC-------EECCCHHH
Q ss_conf 9889852889999999998743356766420123331100378742588899997424---6997-------02058578
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP-------FFTISGSD 216 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~-------f~~~~~s~ 216 (647)
.|-|.|-++ |++.+++.|-. |--...+|.|+||+|||-++..+|.. -.|| .++.+-+.
T Consensus 185 lDPviGR~~---Ei~r~i~iL~R---------r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~ 252 (758)
T PRK11034 185 IDPLIGREK---ELERAIQVLCR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred CCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
T ss_conf 998738489---99999999976---------325896021699986999999999999738997655898899845877
Q ss_pred HH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 86--4442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 217 FV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 217 ~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
++ .+|-|.=+.|++.+.+..++..++|+|||||..+-..- ++.+|+-|-. ..|-..| .+..+-+||||-
T Consensus 253 LiAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG-~~~gg~~Daa-NlLKP~L-------arG~l~~IgaTT 323 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-AASGGQVDAA-NLIKPLL-------SSGKIRVIGSTT 323 (758)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCC-CCCCCCCCHH-HHHHHHH-------HCCCCEEEEECC
T ss_conf 861686415499999999999985798599980434422688-7677764678-8745787-------469723999437
Q ss_pred CCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHH----C-CCHHHHH
Q ss_conf 810-----08833316564231410001347889999999854------887773211024544120----3-7989999
Q gi|254780545|r 295 RPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR------NVPLAPNVILKTIARGTP----G-FSGADLR 358 (647)
Q Consensus 295 ~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~------~~~~~~~~d~~~la~~t~----g-~sgAdi~ 358 (647)
.-+ .=|+||.| ||. .|.|.-|+.+.-..||+-.-. +..+.++ .+...++.+. + |=+.---
T Consensus 324 ~~EYrk~iekD~AL~R--RFq-~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~-al~~av~Ls~rYi~dr~lPDKAI 399 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred HHHHHHCCCCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCH-HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 7998750321478884--282-6531899989999999989998732369577438-99999999976502688961999
Q ss_pred HHHHHHHHHH----HHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999987645----532024210456899975013686
Q gi|254780545|r 359 NLVNEAALMA----ARRNRRLVTMQEFEDAKDKILMGA 392 (647)
Q Consensus 359 ~~~~eAa~~a----~r~~~~~i~~~dl~~A~~rv~~G~ 392 (647)
.|+.||+-.+ ..+.++.|+..|+...+.+. .|.
T Consensus 400 dllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~-t~i 436 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI-ARI 436 (758)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH-HCC
T ss_conf 9999998887513456631658999999999875-036
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36 E-value=7.6e-12 Score=104.69 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCC-------EECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246---997-------0205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVP-------FFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~-------f~~~~~s 215 (647)
+++-|.|-++ |++.+++.|-. |.-...+|.|.||+|||-++..+|... .|| +++.+-.
T Consensus 177 klDpvIGRd~---EI~r~i~IL~R---------R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~ 244 (823)
T CHL00095 177 NLDPVIGRDK---EIERVIQILGR---------RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIG 244 (823)
T ss_pred CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf 9998759569---99999999977---------32488502379998799999999997608899868759936884288
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 886--444203324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
.++ .+|.|+=+.|++.+++..++...+|+|||||..+-..-++ .|+-|-. ..|-..| .+..+=+||||
T Consensus 245 ~L~AGtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~--~g~~Daa-NlLKPaL-------arGel~~IGAT 314 (823)
T CHL00095 245 LLLAGTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAA--EGAIDAA-NILKPAL-------ARGKLQCIGAT 314 (823)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCC--CCCHHHH-HHHHHHH-------HCCCCEEEEEC
T ss_conf 775334222679999999999998579869997351653288976--6643178-8765786-------48986699707
Q ss_pred CCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9810-----08833316564231410001347889999999
Q gi|254780545|r 294 NRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 294 n~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
..-+ .-|+||-| ||. .|.|.-|+.++-..||+-
T Consensus 315 T~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~e~t~~IL~g 352 (823)
T CHL00095 315 TLEEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILLG 352 (823)
T ss_pred CHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHH
T ss_conf 88999998530588996--268-410289987999999999
No 86
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=7.8e-11 Score=97.37 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH-
Q ss_conf 898528899999999987433567664201233----311003787425888999974246---997020585788644-
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP----HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL- 220 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p----~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~- 220 (647)
-|.|+++|...+.+.|.- .+.|.+-| --.||.||+|+|||-|||++|... .-.++.+..|+|.|.
T Consensus 569 rViGQd~AI~~v~~aI~~-------sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~h 641 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred HHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCH
T ss_conf 852809999999999999-------8638999999738999868987888999999999983893342562533211301
Q ss_pred -----------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC---
Q ss_conf -----------420332459999999987378012063235641445578988626889889989985303-2-357---
Q gi|254780545|r 221 -----------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS--- 284 (647)
Q Consensus 221 -----------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~--- 284 (647)
|||-++.- .|.+.-|++--|||++|||+-- | -.++|-||.-||- . ..+
T Consensus 642 sVSrLiGaPPGYVGy~eGG--~LTeaVRr~PySVvLfDEIEKA-----------H---pdV~nilLQvlD~G~LtD~~Gr 705 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKA-----------H---PDVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred HHHHHCCCCCCCCCCCCCC--CHHHHHHHCCCEEEEEHHHHHH-----------C---HHHHHHHHHHHCCCEEECCCCC
T ss_conf 2767558998766757788--1109998198778863257663-----------8---5899999987036832079998
Q ss_pred ----CCEEEEEECCCCC-C------------------------CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf ----7829999629810-0------------------------8833316564231410001347889999999854
Q gi|254780545|r 285 ----EGVILIAATNRPD-V------------------------LDAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 285 ----~~v~vi~aTn~~~-~------------------------lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
.+.|+|.++|--. . .-|.++ +|+|..|.+.+-+.+.-..|+.++++
T Consensus 706 ~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFl--nRiD~iv~F~pL~~~~l~~Iv~~~l~ 780 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred EEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH--HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8851334899646233699986506556688999999999864798888--23784898278999999999999999
No 87
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=3.2e-11 Score=100.16 Aligned_cols=173 Identities=18% Similarity=0.308 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH-
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997020585788644420-
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG- 223 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g- 223 (647)
.+|+||.|++++++.|+..+. ..++|...||+||+|+|||.+|+++|...-+.--.-+.+|+++.-..
T Consensus 1 M~f~~iiGq~~i~~~L~~~i~-----------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFRTIIGHENIKNRIDNSII-----------KGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN 69 (313)
T ss_pred CCHHHCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 983232682999999999998-----------799875043279998509999999999982899778898658863322
Q ss_pred ---CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf ---332459999999987378-----012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 224 ---VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 224 ---~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
.+-..||+|-+.+.. +| =|++|||.|.+- .+.-|.||--+. ++.++++.|-+|+.
T Consensus 70 ~~~I~vd~IR~l~~~~~~-~p~~g~~KV~II~~ae~m~--------------~~AaNALLKtLE--EPP~~t~fIL~t~~ 132 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNK-KPYEGDKKVIIIYKSEKMT--------------EQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHC--------------HHHHHHHHHCCC--CCCCCEEEEEEECC
T ss_conf 569998999999999840-8625895699980777758--------------999999845503--68998589986498
Q ss_pred CCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 100883331-656423141000134788999999985488777321102454412037
Q gi|254780545|r 296 PDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGF 352 (647)
Q Consensus 296 ~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~ 352 (647)
|+.|-|-++ |.-+ +.+.+|+.+.-...|.....+ ++++ ....+++.+.|.
T Consensus 133 ~~~lLpTI~SRCQ~----~~f~~l~~~~i~~~L~~~~~~--~~~~-~~~~~~~~s~G~ 183 (313)
T PRK05564 133 LEQILDTIKSRCQI----YKLNRLSKEDIEKFISYKYND--IDEE-NKNSAIAFSDGI 183 (313)
T ss_pred HHHCCCHHHCCCEE----EECCCCCHHHHHHHHHHHCCC--CCHH-HHHHHHHHCCCC
T ss_conf 35475778706535----668998999999999986258--9999-999999982998
No 88
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33 E-value=3.5e-11 Score=99.90 Aligned_cols=159 Identities=30% Similarity=0.416 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECC
Q ss_conf 4225698898528899999999987433567664201233--311003787425888999974246-------9970205
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTI 212 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~ 212 (647)
++---|..|.|++++|..|.- .+--| .|||+.||||||||.+|||+|.=. ++||=..
T Consensus 6 ~~~fPf~aIvGQe~~k~aLll--------------~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~ 71 (347)
T CHL00081 6 RPVFPFTAIVGQEEMKLALLL--------------NVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSD 71 (347)
T ss_pred CCCCCHHHHCCHHHHHHHHHH--------------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 788984065384999999999--------------825788786998789987499999999985787422068876789
Q ss_pred C------HH-------------------HHHHHHHHCCHHHHH---HH----------HH---HHHHHCCHHEEHHHHHH
Q ss_conf 8------57-------------------886444203324599---99----------99---99873780120632356
Q gi|254780545|r 213 S------GS-------------------DFVELFVGVGASRVR---DM----------FE---QAKNNSPCIVFVDEIDA 251 (647)
Q Consensus 213 ~------~s-------------------~~~~~~~g~g~~~vr---~l----------f~---~a~~~~p~iifiDeida 251 (647)
. ++ -|+++=+|.++-||- |+ |+ .|+.+ --|+|||||.=
T Consensus 72 p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~-rGiLyvDEINl 150 (347)
T CHL00081 72 PRDPDLMSDEVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN-RGILYVDEVNL 150 (347)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCC-CCEEEEEHHHH
T ss_conf 89810024266654314666752114686253688885230114000998984587115653122203-88588614543
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHH---------CCCCCC--CCEEEEEECCCCC-CCCHHHCCCCCCCCEEEEC-HH
Q ss_conf 414455789886268898899899853---------032357--7829999629810-0883331656423141000-13
Q gi|254780545|r 252 VGRHRGIGLGGGNDEREQTLNQLLVEM---------DGFESS--EGVILIAATNRPD-VLDAALLRPGRFDRQITVP-NP 318 (647)
Q Consensus 252 ~~~~r~~~~~~~~~e~~~~ln~ll~~m---------dg~~~~--~~v~vi~aTn~~~-~lD~al~RpgRfd~~i~~~-~P 318 (647)
+- +.++|.||.-| ||++-. ...++||+-|=.+ .|-|+++= ||.-++.++ .+
T Consensus 151 l~--------------d~~v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llD--RF~l~v~v~~~~ 214 (347)
T CHL00081 151 LD--------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLIGSGNPEEGELRPQLLD--RFGMHAEIRTVK 214 (347)
T ss_pred HH--------------HHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCCCCCCHHHHH--HEEEEEECCCCC
T ss_conf 23--------------79999999998558089804642330575006885578655674888882--632267458878
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4788999999985
Q gi|254780545|r 319 DIVGREHILMVHS 331 (647)
Q Consensus 319 ~~~~r~~i~~~~~ 331 (647)
|.+.|.+|++..+
T Consensus 215 ~~e~R~eiv~~r~ 227 (347)
T CHL00081 215 DPELRVKIVEQRS 227 (347)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999999
No 89
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.31 E-value=1.9e-12 Score=109.09 Aligned_cols=110 Identities=37% Similarity=0.456 Sum_probs=72.9
Q ss_pred CEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH--HHHH------CCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf 11003787425888999974246-99702058578864--4420------332459999999987378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE--LFVG------VGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~--~~~g------~g~~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
||||+||||||||.+|+.+|... +.|++.+.++...+ -++| -+.......|-.|-+ .++|+||||||..-
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~-~g~vl~lDEin~a~ 79 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAR-EGEIAVLDEINRAN 79 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCC-CCCEEEECCHHHCC
T ss_conf 98999899756999999999980798311121465565222057342379935781551410101-28689963434489
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCCEEEEEECCCCC----CCCHHHCCCCCC
Q ss_conf 4455789886268898899899853032----------------3577829999629810----088333165642
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGF----------------ESSEGVILIAATNRPD----VLDAALLRPGRF 309 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~----------------~~~~~v~vi~aTn~~~----~lD~al~RpgRf 309 (647)
. .+++.|+.-||.- ...+++.|||+.|-.+ .||+||+| ||
T Consensus 80 -----------~---~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~--RF 139 (139)
T pfam07728 80 -----------P---DVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRS--RF 139 (139)
T ss_pred -----------H---HHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHC--CC
T ss_conf -----------9---999999999748969836897273366667899969999758965478009989975--09
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.31 E-value=2.4e-10 Score=93.91 Aligned_cols=124 Identities=26% Similarity=0.422 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH-----
Q ss_conf 985288999999999874335676642012----33311003787425888999974246997020585788644-----
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL----- 220 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~----- 220 (647)
|.|++++.+.+.+.|.- .+.|.+ |.--.||.||+|+|||-|||++|...+.+++.+..|+|.|.
T Consensus 460 viGQ~~Ai~~v~~ai~~-------~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsr 532 (758)
T PRK11034 460 VFGQDKAIEALTEAIKM-------SRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred HHCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
T ss_conf 74549999999999999-------86388899997058999789987779999999999866772142665312014777
Q ss_pred -------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC-------
Q ss_conf -------420332459999999987378012063235641445578988626889889989985303-2-357-------
Q gi|254780545|r 221 -------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS------- 284 (647)
Q Consensus 221 -------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~------- 284 (647)
|||-++. -.|.+.-|++--|||++|||+-- | ..++|-||.-||- . ..+
T Consensus 533 LiGaPPGYVGy~eG--G~Lte~Vr~~PysVvL~DEIEKA-----------h---pdV~nilLQvlD~G~LtD~~Gr~vdF 596 (758)
T PRK11034 533 LIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------H---PDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred HCCCCCCCCCCCCC--CCCCHHHHHCCCEEEEEHHHHHH-----------C---HHHHHHHHHHCCCCCCCCCCCCEEEC
T ss_conf 44899866676777--70128787398779973367563-----------9---89999887323778301799998844
Q ss_pred CCEEEEEECCCC
Q ss_conf 782999962981
Q gi|254780545|r 285 EGVILIAATNRP 296 (647)
Q Consensus 285 ~~v~vi~aTn~~ 296 (647)
.+.++|.++|--
T Consensus 597 ~NtiIImTSN~G 608 (758)
T PRK11034 597 RNVVLVMTTNAG 608 (758)
T ss_pred EEEEEEEECCCC
T ss_conf 001999825617
No 91
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=1.2e-10 Score=96.08 Aligned_cols=125 Identities=28% Similarity=0.455 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH-
Q ss_conf 89852889999999998743356766420123---3-311003787425888999974246---997020585788644-
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---P-HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL- 220 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p-~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~- 220 (647)
-|.|+++|.+.+.+.|.- .+.|.+- | --.||.||+|+|||.||||+|... .-.++.+..|+|.|.
T Consensus 566 rViGQd~AI~~I~~aI~~-------sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~h 638 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred HHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHH
T ss_conf 971709999999999999-------9718888999745899867887768999999999985585206984304430122
Q ss_pred -----------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC--
Q ss_conf -----------420332459999999987378012063235641445578988626889889989985303--23577--
Q gi|254780545|r 221 -----------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE-- 285 (647)
Q Consensus 221 -----------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~-- 285 (647)
|||-++. -.|.+..|++--|||++|||+- .| ..++|-||.-||- +..+.
T Consensus 639 svsrLiGaPPGYVGy~eg--G~Lte~vr~~PysVvL~DEIEK-----------Ah---~~V~~~lLQilD~G~ltD~~Gr 702 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEK-----------AH---PDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred HHHHHCCCCCCCCCCCCC--CEECHHHHHCCCEEEEECCHHH-----------HC---HHHHHHHHHHHCCCEEECCCCC
T ss_conf 477855899976776878--7423989819887998530543-----------07---6899999988236743079998
Q ss_pred -----CEEEEEECCCC
Q ss_conf -----82999962981
Q gi|254780545|r 286 -----GVILIAATNRP 296 (647)
Q Consensus 286 -----~v~vi~aTn~~ 296 (647)
+.|+|.+||.-
T Consensus 703 ~vdF~NtiiimTSN~G 718 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLG 718 (852)
T ss_pred EEEEEEEEEEEECCCC
T ss_conf 8853556898615406
No 92
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.4e-11 Score=99.97 Aligned_cols=162 Identities=26% Similarity=0.386 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCC
Q ss_conf 25698898528899999999987433567664201233311003787425888999974246----------99702058
Q gi|254780545|r 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTIS 213 (647)
Q Consensus 144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~ 213 (647)
.-+.|-|.|=|+.. +.+++.|-. |....-+|.|+||.|||-++..+|..- +.-.++..
T Consensus 166 ~gklDPvIGRd~EI---~r~iqIL~R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEI---RRTIQILSR---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCCCCHHHHH---HHHHHHHHC---------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEC
T ss_conf 58988773747999---999999835---------688998476689888999998999997469999787588799714
Q ss_pred HHHHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 57886--4442033245999999998737801206323564144557898862688988998998530323577829999
Q gi|254780545|r 214 GSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIA 291 (647)
Q Consensus 214 ~s~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~ 291 (647)
-+.++ .+|.|+=+.|++.+-+..++..+.|+|||||..|-..-++..+ +-| .-| +|--+ -.+..+-+||
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~-a~D----AaN-iLKPa---LARGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD----AAN-LLKPA---LARGELRCIG 304 (786)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCC-CCC----HHH-HHHHH---HHCCCEEEEE
T ss_conf 87674646535738999999999985179849998235540577766666-512----566-46778---7458737997
Q ss_pred ECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 6298100-----8833316564231410001347889999999
Q gi|254780545|r 292 ATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 292 aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
||..-+. -|+||-| ||- .|.|+-|+.+.-..||+-
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRG 344 (786)
T ss_pred ECCHHHHHHHHHHCHHHHH--CCC-EEECCCCCHHHHHHHHHH
T ss_conf 3558999887330667784--675-102799898999999987
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.3e-10 Score=95.72 Aligned_cols=188 Identities=29% Similarity=0.413 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------------C
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699702-------------0
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------------T 211 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------------~ 211 (647)
.+|+||.|++.+++.|+..+. -.|++...||+||-|||||.+||.+|...+|.-- .
T Consensus 12 ~~F~eviGQe~v~~~L~~Ai~-----------~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~ 80 (775)
T PRK07764 12 ATFAEVVGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVA 80 (775)
T ss_pred CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 876662285999999999998-----------199763376237888788899999999966899999898888763788
Q ss_pred CC-HH----HHHHHHH--HCCHHHHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 58-57----8864442--03324599999999873780-----1206323564144557898862688988998998530
Q gi|254780545|r 212 IS-GS----DFVELFV--GVGASRVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 212 ~~-~s----~~~~~~~--g~g~~~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
+. |+ +++|+=- .-|-..||+|-+.+ ..+|. |..|||.+-+- .+..|.||.-+.
T Consensus 81 i~~g~~~~~DviEiDAAS~~gVddiReL~e~~-~y~P~~~ryKVyIIDEaHmls--------------~~afNALLKtLE 145 (775)
T PRK07764 81 LAPGGPGSLDVVEIDAASHGGVDDARELRERA-FFAPAQSRYRIFIIDEAHMVT--------------TAGFNALLKIVE 145 (775)
T ss_pred HHCCCCCCCCEEEECCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHHC--------------HHHHHHHHHHHC
T ss_conf 86389888866873156556889999999854-768767863599985354407--------------999999988622
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 3235778299996298100883331-656423141000134788999999985488777321102454412037989999
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
+....|++|-||-.|+.|-+-++ |.-|||.+- |+..++..+.+-+ ..-.++.++++ -|..+++.. +-|-.|--
T Consensus 146 --EPP~hvvFIlaTTep~kip~TI~SRcq~f~Fr~-i~~~~~~~~l~~i-~~~E~i~~~~~-al~li~r~~-~Gs~RDal 219 (775)
T PRK07764 146 --EPPEHLIFIFATTEPEKVIGTIRSRTHHYPFRL-VPPGTMRPYLERI-CAQEGVVVDDA-VLPLVIRAG-GGSPRDTL 219 (775)
T ss_pred --CCCCCEEEEEECCCHHHCCHHHHHHCCCCCCCC-CCHHHHHHHHHHH-HHHCCCCCCHH-HHHHHHHHC-CCCHHHHH
T ss_conf --786462799954873547167764102345266-9999999999999-99839987989-999999982-89667689
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780545|r 359 NLVNEA 364 (647)
Q Consensus 359 ~~~~eA 364 (647)
+|+.+.
T Consensus 220 S~ldQl 225 (775)
T PRK07764 220 SVLDQL 225 (775)
T ss_pred HHHHHH
T ss_conf 999999
No 94
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=2.2e-10 Score=94.08 Aligned_cols=160 Identities=26% Similarity=0.393 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s 215 (647)
.+|-|.|-++ |++.+++.|-. |--...+|.|.||+|||-++..+|... +.-.++.+-+
T Consensus 185 klDPvIGRd~---EI~r~iqIL~R---------r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg 252 (852)
T TIGR03345 185 KIDPVLGRDD---EIRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH
T ss_conf 9998869499---99999999986---------24799746579998799999999999976999867743856786788
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
.++ .+|-|+=+.|++.+.+..++. .|+|+|||||..+-..-+ ..|+.|-. ..|-..| .+..+-+|||
T Consensus 253 ~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~--~~G~~Daa-NiLKPaL-------arGelr~IGA 322 (852)
T TIGR03345 253 LLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG--QAGQGDAA-NLLKPAL-------ARGELRTIAA 322 (852)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf 886403576359999999999998489976999634877528998--88862278-8751787-------3787349983
Q ss_pred CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 29810-----088333165642314100013478899999998
Q gi|254780545|r 293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
|-.-+ .=|+||-| ||. .|.|.-|+.++-..||+-.
T Consensus 323 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~eeti~IL~gl 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf 578999888642688996--247-5527999879999999987
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=2.7e-10 Score=93.44 Aligned_cols=126 Identities=26% Similarity=0.437 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf 889852889999999998743356766420123---331-1003787425888999974246---997020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~ 220 (647)
+-|.|+++|...+.+.|.- .+.|.+- |-| .||.||+|+|||-|||++|... .-.++.+..|+|.|.
T Consensus 509 ~~ViGQd~AI~~vs~ai~r-------sraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~ 581 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRR-------ARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK 581 (823)
T ss_pred HHHCCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 7840769999999999999-------970899899974689987899887799999999997478202588535101554
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~-- 284 (647)
|||-++. -.|-+.-|++--|||++|||+- .| ..++|-||.-||- . ..+
T Consensus 582 hsvsrLIGaPPGYVGy~eG--G~LTeaVrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlDdG~LtD~~G 645 (823)
T CHL00095 582 HTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEK-----------AH---PDIFNLLLQILDDGRLTDSKG 645 (823)
T ss_pred CCHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHCCCCCCCCCCC
T ss_conf 2076745899876677878--8201988719986998621311-----------38---899998876516884348999
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
.+.|+|.++|--
T Consensus 646 r~vdF~NtIIImTSNlG 662 (823)
T CHL00095 646 RTIDFKNTLIIMTSNLG 662 (823)
T ss_pred CEEECEEEEEEECCCCC
T ss_conf 98843103999716505
No 96
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.25 E-value=1.1e-11 Score=103.47 Aligned_cols=101 Identities=28% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCC---CEECCCHHHHHH-----HHHHC-----CHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf 31100378742588899997424699---702058578864-----44203-----324599999999873780120632
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANV---PFFTISGSDFVE-----LFVGV-----GASRVRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~---~f~~~~~s~~~~-----~~~g~-----g~~~vr~lf~~a~~~~p~iifiDe 248 (647)
--+||.||||||||.|||++|..... ||+.+.+++|.+ +.+|. |...-..|++..+++.+|||||||
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE 83 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE 83 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf 79998898998999999999999679853448855756542569998705899872624265078999838984898657
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC-------CCEEEEEECCCC
Q ss_conf 35641445578988626889889989985303--2357-------782999962981
Q gi|254780545|r 249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS-------EGVILIAATNRP 296 (647)
Q Consensus 249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~-------~~v~vi~aTn~~ 296 (647)
||-..+ .+.|-||.-+|+ +..+ .+.++|+++|.-
T Consensus 84 IeKa~~--------------~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 84 IEKAHP--------------GVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHHCH--------------HHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf 766589--------------9999999870587063699967844647999768737
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25 E-value=6.6e-10 Score=90.69 Aligned_cols=221 Identities=21% Similarity=0.342 Sum_probs=140.1
Q ss_pred CCCCHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEE
Q ss_conf 1242256988-9852--8899999999987433567-664201233311003787425888999974246-----99702
Q gi|254780545|r 140 GNVGSVTFKD-VAGV--DEAKEDLQEIVDFLCDPQK-FKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFF 210 (647)
Q Consensus 140 ~~~~~v~f~d-v~g~--~~~k~~~~~~v~~l~~~~~-~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~ 210 (647)
+-.++-||+. |.|- .-|....+.+. .+|.. | .=+.+||++|.|||.|..|++++. +...+
T Consensus 111 ~Ln~~yTFdnFVvG~sN~lA~aAA~~Va---~~pg~~y--------NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~ 179 (447)
T PRK00149 111 NLNPKYTFDNFVVGKSNRLAHAAALAVA---ENPGKAY--------NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV 179 (447)
T ss_pred CCCCCCCCCCCEECCCCHHHHHHHHHHH---HCCCCCC--------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8885560326222698599999999998---3767677--------8558977998878899999999999858997289
Q ss_pred CCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 05857886444203-32459999999987378012063235641445578988626889889989985303235778299
Q gi|254780545|r 211 TISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVIL 289 (647)
Q Consensus 211 ~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~v 289 (647)
++++.+|..-|+.. ....+ +-|..--++. -++.||+|.-++++. +|..+|+.-.+-+..+..-||
T Consensus 180 Y~tae~F~~~~v~al~~~~~-~~Fr~~yr~~-DvLliDDiqfl~gk~------------~tqeeff~~fn~l~~~~kqiv 245 (447)
T PRK00149 180 YVSSEKFTNDFVKALRNNAM-EEFKEKYRSV-DVLLIDDIQFLAGKE------------KTQEEFFHTFNALHENNKQIV 245 (447)
T ss_pred EEEHHHHHHHHHHHHHCCCH-HHHHHHHHCC-CEEEECHHHHHHCCH------------HHHHHHHHHHHHHHHCCCEEE
T ss_conf 95499999999999851869-9999999728-854321488860557------------799999999999998499689
Q ss_pred EEECCCCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 996298100---8833316564231--4100013478899999998548--87773211024544120379899999999
Q gi|254780545|r 290 IAATNRPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVN 362 (647)
Q Consensus 290 i~aTn~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~ 362 (647)
+++--.|.. ||+-|.- ||.. .+.+..||.+.|.+||+..++. ..++++ -++.||.... -+-.+|+..+|
T Consensus 246 ~tsd~~P~~l~~l~~rL~S--Rf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~-v~~~iA~~~~-~nvR~LeGal~ 321 (447)
T PRK00149 246 ITSDRPPKELEGLEDRLRS--RFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNE-VLEFIAKRIR-SNIRELEGALN 321 (447)
T ss_pred EECCCCHHHCCCCCHHHHH--HHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC-CCHHHHHHHHH
T ss_conf 9578896765651177886--763762651059999999999999999728999989-9999997126-88999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9876455320242104568999750136
Q gi|254780545|r 363 EAALMAARRNRRLVTMQEFEDAKDKILM 390 (647)
Q Consensus 363 eAa~~a~r~~~~~i~~~dl~~A~~rv~~ 390 (647)
.-...+.-.+ ..|+.+...+++..+..
T Consensus 322 ~l~a~~~~~~-~~i~~~~~~~~l~~~~~ 348 (447)
T PRK00149 322 RLVAYASLTG-RPITLELAKEALKDLLR 348 (447)
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHHH
T ss_conf 9999999868-99999999999998740
No 98
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6e-10 Score=90.96 Aligned_cols=126 Identities=29% Similarity=0.457 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHHH
Q ss_conf 8898528899999999987433567664201233----3110037874258889999742469---97020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP----HGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p----~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~~ 220 (647)
+-|.|+|+|...+...|. -.+.|.+-| .-.||.||.|+|||-||||+|.... -+++.+..|+|.|.
T Consensus 491 ~rViGQd~AV~~v~~aIr-------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIR-------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred CCEECHHHHHHHHHHHHH-------HHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf 650173999999999999-------9856999999873578866788656999999999996599744455456877778
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~-- 284 (647)
|||-.+. -.|=+.-|++-.|||++|||+- .| -.++|-||.-||- . ..+
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK-----------AH---pdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK-----------AH---PDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHCCCCCCCEECCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCCEECCCC
T ss_conf 7799872799987200655--4003766069986888412644-----------08---899999999846780554899
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
.+.++|.++|--
T Consensus 628 r~VdFrNtiIImTSN~G 644 (786)
T COG0542 628 RTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CEEECCEEEEEEECCCC
T ss_conf 88843002899845026
No 99
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=99.24 E-value=2.8e-10 Score=93.42 Aligned_cols=194 Identities=22% Similarity=0.361 Sum_probs=117.6
Q ss_pred CCHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCC
Q ss_conf 42256988-985--28899999999987433567664201233311003787425888999974246-----99702058
Q gi|254780545|r 142 VGSVTFKD-VAG--VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTIS 213 (647)
Q Consensus 142 ~~~v~f~d-v~g--~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~ 213 (647)
.++-||++ |.| ...+..-.+.++ ++| +.+-..+.+|||+|+|||.|.+|++.++ +...++++
T Consensus 2 ~~~~TFdnF~vg~~N~~a~~~~~~i~---~~~-------~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~ 71 (219)
T pfam00308 2 NKRYTFENFVIGSSNRFAHAAALAVA---EAP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLT 71 (219)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH---HCC-------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99987102023683899999999999---675-------87678269988999988899999999999849998288843
Q ss_pred HHHHHHHHHHCCHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 57886444203324-59999999987378012063235641445578988626889889989985303235778299996
Q gi|254780545|r 214 GSDFVELFVGVGAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 214 ~s~~~~~~~g~g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
..+|...++..-.. .+ .-|..--... -++.||+||.+..+.. +-.+|..-++.+..+.+-+++++
T Consensus 72 ~~~~~~~~~~~l~~~~~-~~f~~~l~~~-d~l~iDDi~~l~~~~~------------~ee~lf~l~N~~~~~~~~lllts 137 (219)
T pfam00308 72 SEEFLNDFVDALRDNKI-EAFKKSYRNV-DLLLIDDIQFLAGKEK------------TQEEFFHTFNALHENNKQIVLTS 137 (219)
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHC-CHHHHCCHHHHCCCHH------------HHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999988999981888-8999997632-3365223676568647------------89999999999997298699977
Q ss_pred CCCCCCCC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 29810088---333165642--314100013478899999998548--877732110245441203798999999999
Q gi|254780545|r 293 TNRPDVLD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNE 363 (647)
Q Consensus 293 Tn~~~~lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~e 363 (647)
..-|..+. +-|.- || --.+.+..||.+.|.+||+.+.+. ..++++| ++.|+++.+ -+-.+|..+++.
T Consensus 138 ~~~p~~l~~~~~dL~S--RL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v-~~yl~~r~~-R~~r~L~~~L~~ 211 (219)
T pfam00308 138 DRPPKELEGFEDRLRS--RFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEV-LNFIAQRIT-DNVRELEGALNR 211 (219)
T ss_pred CCCCCCCCCCCHHHHH--HHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHH
T ss_conf 9981002453277999--9868756611699999999999999998499999999-999998427-989999999999
No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=1.3e-10 Score=95.83 Aligned_cols=126 Identities=30% Similarity=0.455 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf 8898528899999999987433567664201233---31-1003787425888999974246---997020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~ 220 (647)
+-|.|+++|...+.+.|.- .+.|.+-| -| .||.||+|+|||-|||++|... .-.++.+..|+|.|.
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~-------sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred HHHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCH
T ss_conf 9972849999999999999-------871799999985689987899877899999999997198611478422432104
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303--2357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~-- 284 (647)
|||-++. -.|.+.-|++--|||++|||+- .| ..++|-||.-||- +..+
T Consensus 639 hsvsrLiGaPPGYVGy~eG--G~LTe~Vrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlD~G~LtD~~G 702 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK-----------AH---PDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred HHHHHHCCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCEEECCCC
T ss_conf 3687863899976674877--7210988809986888611300-----------28---899999998724677757999
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
.+.|+|.++|--
T Consensus 703 r~vdF~NtIIImTSN~G 719 (852)
T TIGR03345 703 REIDFKNTVILLTSNAG 719 (852)
T ss_pred CEEECEEEEEEECCCHH
T ss_conf 98845212999757244
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.19 E-value=7.8e-10 Score=90.16 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 4225698898528899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
.+..||+|...-+ -...+..+..+..+| + ++-+.+|||+|+|||.|++|+++++ +...++++..+|.
T Consensus 9 ~~~~tfdnFi~~~-N~~~~~~l~~~~~~~------~---~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~ 78 (226)
T TIGR03420 9 PDDPTFDNFYAGG-NAELLAALRQLAAGK------G---DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCCHHCCCCCC-HHHHHHHHHHHHHCC------C---CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 9987631236586-799999999876466------8---88699989999988999999999986269957995299987
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 44420332459999999987378012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.... +.++.- ++ -.+++||+||.+..++... .+=-.++|.+ ..+.+-++++++..|..
T Consensus 79 ~~~~--------~~l~~l-~~-~d~l~iDDi~~i~~~~~~e-----~~lF~l~N~~-------~~~~~~ilits~~~p~~ 136 (226)
T TIGR03420 79 QADP--------EVLEGL-EQ-ADLVCLDDVEAIAGQPEWQ-----EALFHLYNRV-------REAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HHHH--------HHHHHC-CC-CCEEEEECHHHHCCCHHHH-----HHHHHHHHHH-------HHHCCEEEEECCCCHHH
T ss_conf 7539--------999727-44-8999996633343783789-----9999999999-------86528289867888232
Q ss_pred CC---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88---333165642--31410001347889999999854--887773211024544120379899999999987645532
Q gi|254780545|r 299 LD---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 299 lD---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
++ |-|. -|| -..+.+..||.+.|..|++.++. +..+++++ ++.++++.+ -+-..|..+++.-...+. .
T Consensus 137 l~~~l~dL~--SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~v-i~yl~~r~~-R~~~~l~~~l~~Ld~~sl-~ 211 (226)
T TIGR03420 137 LPLRLPDLR--TRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL-A 211 (226)
T ss_pred CCCCHHHHH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHHH-H
T ss_conf 032017799--99968856852799999999999999998599889999-999998637-989999999999999999-8
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 0242104568999
Q gi|254780545|r 372 NRRLVTMQEFEDA 384 (647)
Q Consensus 372 ~~~~i~~~dl~~A 384 (647)
.++.||..-+.++
T Consensus 212 ~kr~ITi~l~kev 224 (226)
T TIGR03420 212 AKRKITIPFVKEV 224 (226)
T ss_pred HCCCCCHHHHHHH
T ss_conf 0899999999998
No 102
>KOG0989 consensus
Probab=99.18 E-value=1.2e-10 Score=96.07 Aligned_cols=178 Identities=27% Similarity=0.308 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE------ECCCHHHHH
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970------205857886
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF------FTISGSDFV 218 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f------~~~~~s~~~ 218 (647)
-+|+|++|++++++-|+-.+. + +.---.|||||||||||-.|+|+|.+...|= ....+|+..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~-----------~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989 33 KTFDELAGQEHVVQVLKNALL-----------R-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------H-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
T ss_conf 737765015999999999986-----------0-6886078668999867689999999855742355542431366001
Q ss_pred HHHHHCCHHHHHHHHHHHHHHC---------C-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 4442033245999999998737---------8-01206323564144557898862688988998998530323577829
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNS---------P-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVI 288 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~---------p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~ 288 (647)
..- ++..++. -|++-.... | -||.+||-|++- +| +-+.|.--||.|.... .
T Consensus 101 Gis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----------sd----aq~aLrr~mE~~s~~t--r 161 (346)
T KOG0989 101 GIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT----------SD----AQAALRRTMEDFSRTT--R 161 (346)
T ss_pred CCC--CHHHHHC-CHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH----------HH----HHHHHHHHHHCCCCCE--E
T ss_conf 431--0066523-79987502556567889863289974164530----------99----9999999986254665--9
Q ss_pred EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 9996298100883331656423141000134788999999985-48877732110245441203798999999
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS-RNVPLAPNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~-~~~~~~~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
.|--||.++.|-+-|.- |--+--+=+++|..--...-.+.. .+.+++++ -++.+|+. |+.||...
T Consensus 162 FiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~-al~~I~~~----S~GdLR~A 227 (346)
T KOG0989 162 FILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDD-ALKLIAKI----SDGDLRRA 227 (346)
T ss_pred EEEECCCHHHCCHHHHH--HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHH----CCCCHHHH
T ss_conf 99973885647728774--677712887644789999999988858997878-99999997----38728999
No 103
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.18 E-value=8.5e-10 Score=89.89 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=66.7
Q ss_pred EEEEEECCCC--CCCCHHHCC-CCCCCCEEEEC--HHH-HHHHHHHHHHHH---C---CCC-CCCC-C-CHHHHHHHHHC
Q ss_conf 2999962981--008833316-56423141000--134-788999999985---4---887-7732-1-10245441203
Q gi|254780545|r 287 VILIAATNRP--DVLDAALLR-PGRFDRQITVP--NPD-IVGREHILMVHS---R---NVP-LAPN-V-ILKTIARGTPG 351 (647)
Q Consensus 287 v~vi~aTn~~--~~lD~al~R-pgRfd~~i~~~--~P~-~~~r~~i~~~~~---~---~~~-~~~~-~-d~~~la~~t~g 351 (647)
.++|+|+|.- +.|.|||+- ---|...+++. +|| .+-|..+.+.-. + +.| ++.+ | -+-..|++..|
T Consensus 278 f~lV~aGn~d~~~~m~palrsri~g~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII~eA~R~AG 357 (637)
T PRK13765 278 FIMVAAGNLDAIENMHPALRSRIRGYGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEIIREARRRAG 357 (637)
T ss_pred EEEEEECCHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 69999537276664399888651047749982356778788999999999999974388899998999999999997405
Q ss_pred CCH------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 798------999999999876455320242104568999750
Q gi|254780545|r 352 FSG------ADLRNLVNEAALMAARRNRRLVTMQEFEDAKDK 387 (647)
Q Consensus 352 ~sg------Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~r 387 (647)
-.+ .+|.+|++||.-.|..++++.|+.+|+.+|++.
T Consensus 358 ~k~kLTLrLReL~~LIReAgdiA~~eg~~~Vta~hV~~A~~~ 399 (637)
T PRK13765 358 RKGHLTLKLRDLGGLVRVAGDIARSEGADLVTAEHVLEAKKI 399 (637)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 456630528988749999889999759996649999999998
No 104
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.17 E-value=4.5e-10 Score=91.88 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCC---CCC----CEECCCHH
Q ss_conf 69889852889999999998743356766420123331---100378742588899997424---699----70205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGE---ANV----PFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e---~~~----~f~~~~~s 215 (647)
.++...|++++|.-++||..|..=.++=.+-|.+..+. ++|-|-||||||.-||-+|.= .|| .++-+-=.
T Consensus 4 EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERA 83 (261)
T TIGR02881 4 ELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 35640488899999999999999988887510114884478774278668438999999999853375678867887622
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEEEECC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778-29999629
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG-VILIAATN 294 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~-v~vi~aTn 294 (647)
|+|--|.|-+|.|.|++-++| ..-|+||||.=|++ ||..---| +| .+-.|.-.|. +.+.. |+++| =
T Consensus 84 DLVGEYIGHTAqkTRe~~kkA---~GGvLFiDEAYSLa--RGGEKDFG---KE-AIDtLVK~mE--d~~~~lvlILA--G 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLA--RGGEKDFG---KE-AIDTLVKAME--DQRNELVLILA--G 150 (261)
T ss_pred CCCCCCCCCHHHHHHHHHHHH---CCCCHHHHHHHHHH--CCCCCCCC---CH-HHHHHHHHHH--HCCCCEEEEEE--C
T ss_conf 212232030048999999986---38800557777761--48888766---20-8889999876--15698689970--8
Q ss_pred CCCCCCHHHC-CCC---CCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCC--CH----HHHHHHHH-CCC-HHHHHHH
Q ss_conf 8100883331-656---423141000134788999999985488--777321--10----24544120-379-8999999
Q gi|254780545|r 295 RPDVLDAALL-RPG---RFDRQITVPNPDIVGREHILMVHSRNV--PLAPNV--IL----KTIARGTP-GFS-GADLRNL 360 (647)
Q Consensus 295 ~~~~lD~al~-Rpg---Rfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~--d~----~~la~~t~-g~s-gAdi~~~ 360 (647)
+++-+|-=|- -|| ||--.|.||-=+.++-.+|.+.-++.. .++++- .+ ......+. -|| |--|.|+
T Consensus 151 Y~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~ 230 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 76899998620779777665054188998889999999998646422578899999999741244421005762012428
Q ss_pred HHHHHHH-HHHH-HCCCCCHHHHH
Q ss_conf 9998764-5532-02421045689
Q gi|254780545|r 361 VNEAALM-AARR-NRRLVTMQEFE 382 (647)
Q Consensus 361 ~~eAa~~-a~r~-~~~~i~~~dl~ 382 (647)
+-+|-.. |+|= ++..++.+||.
T Consensus 231 iE~AIR~QAvRlL~~~~~~k~dL~ 254 (261)
T TIGR02881 231 IEKAIRRQAVRLLKKSDYSKEDLM 254 (261)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 899999999876434643589999
No 105
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=6.1e-10 Score=90.95 Aligned_cols=196 Identities=26% Similarity=0.367 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E------ECC
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997-------0------205
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F------FTI 212 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f------~~~ 212 (647)
+|+||.|++++...|...+. -.|+....||.||.|||||.+||-+|...+|. + ..+
T Consensus 14 ~f~e~vGQ~~v~~~L~nal~-----------~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i 82 (717)
T PRK08853 14 QFKEVVGQSHVLTALENALA-----------HNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEI 82 (717)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 56551385999999999997-----------0997405761088988898999999998678999999978887026767
Q ss_pred CH---HHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 85---7886444203324-----59999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r 213 SG---SDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 213 ~~---s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
.. -|++|+ .+|+ .+|+|.+.+ ..+| -|.+|||..-+- .+..|.||.-+.
T Consensus 83 ~~g~~~d~~Ei---DaAs~~~vdd~rel~~~~-~y~p~~~~yKvyiiDEvHmls--------------~~afnAlLKtlE 144 (717)
T PRK08853 83 DEGRFVDLLEI---DAASRTKVEDTRELLDNV-QYKPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE 144 (717)
T ss_pred HCCCCCCEEEE---CCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC
T ss_conf 44787752454---056567889999999855-548877854799983054438--------------999999987603
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 3235778299996298100883331-656423141000134788999999985--4887773211024544120379899
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGAD 356 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAd 356 (647)
+..+.|++|-||-.|+.|...+| |.-||+.+- ++..+..++ |..-+ .++..+++ -+..||+...| |-.|
T Consensus 145 --EPP~hv~FilaTT~~~kip~TilSRc~~f~l~~-~~~~~i~~~---l~~i~~~E~i~~~~~-al~~ia~~a~G-s~Rd 216 (717)
T PRK08853 145 --EPPEYVKFLLATTDPQKLPVTILSRCLQFHLKP-ISVDQIHQQ---LDFVLDKEQVSAEAR-ALGLIAHAADG-SMRD 216 (717)
T ss_pred --CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHH
T ss_conf --787564899843873437388987654423268-999999999---999999759876999-99999997688-3778
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999998764553202421045689
Q gi|254780545|r 357 LRNLVNEAALMAARRNRRLVTMQEFE 382 (647)
Q Consensus 357 i~~~~~eAa~~a~r~~~~~i~~~dl~ 382 (647)
--.|...|-- .+...|+.+++.
T Consensus 217 alsl~dqaia----~~~g~~~~~~v~ 238 (717)
T PRK08853 217 ALSLTDQAIA----LGNGQVTTDIVS 238 (717)
T ss_pred HHHHHHHHHH----HCCCCCCHHHHH
T ss_conf 8889999999----658971699999
No 106
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1e-09 Score=89.25 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-----EECCCHH---------
Q ss_conf 98528899999999987433567664201233311003787425888999974246997-----0205857---------
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-----FFTISGS--------- 215 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-----f~~~~~s--------- 215 (647)
+-+-|+-.+.+. .+|... +-...|..+++|||||||||..++-++.+..-+ ++++.+-
T Consensus 19 l~~Re~ei~~l~---~~l~~~-----~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLA---SFLAPA-----LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred CCCHHHHHHHHH---HHHHHH-----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
T ss_conf 103488999999---999998-----558998607998899987328999999999733156757999513078787999
Q ss_pred -HHHHHH-----HHCCHHH-HHHHHHHHH-HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf -886444-----2033245-999999998-73780120632356414455789886268898899899853032357782
Q gi|254780545|r 216 -DFVELF-----VGVGASR-VRDMFEQAK-NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGV 287 (647)
Q Consensus 216 -~~~~~~-----~g~g~~~-vr~lf~~a~-~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v 287 (647)
.+..++ .|..... ...+++.-. ...+.||-+||+|.+..+.+ .+|-+|+-..+-+ ...|
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC-----------CHHHHEECCCCCC--CEEE
T ss_conf 99999826899767632689999999777418759999764765415464-----------1455111247767--5379
Q ss_pred EEEEECCCC---CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHCCCHHHHH--
Q ss_conf 999962981---0088333165642314100013478899999998548----8777321102454412037989999--
Q gi|254780545|r 288 ILIAATNRP---DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN----VPLAPNVILKTIARGTPGFSGADLR-- 358 (647)
Q Consensus 288 ~vi~aTn~~---~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~----~~~~~~~d~~~la~~t~g~sgAdi~-- 358 (647)
.+|+.+|-. +.+||-+...=. .++|.|++=+.++-..|++--.+. ..+++++ ++.+|....--+| |..
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DAR~a 234 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DARKA 234 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHCCC-CHHHH
T ss_conf 999973548899987566765068-76355289898999999999998540468748039-9999998876186-47760
Q ss_pred -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf -999998764553202421045689997501
Q gi|254780545|r 359 -NLVNEAALMAARRNRRLVTMQEFEDAKDKI 388 (647)
Q Consensus 359 -~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv 388 (647)
.+|+.|+-.|-+++...++.+|...|.+.+
T Consensus 235 idilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 235 IDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 8999999998654078853700478899875
No 107
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14 E-value=6e-09 Score=83.73 Aligned_cols=225 Identities=20% Similarity=0.264 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCH
Q ss_conf 1242256988985288999999999874335676642012333110037874258889999742469-----97020585
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISG 214 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~ 214 (647)
.-.++-||++...-+.-.....-...+-.+|.+ +-.=++||||.|.|||.|++|+++++. .-+++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCC-------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 689888554220477449999999998756688-------6895799879999789999999999986299864885048
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
++|...||-..-..=-+-|+.-- +--.+.||+|+.++.+... ..|--.|.|.|. .+.+-+|+.+-.
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~-------~~~kqIvltsdr 217 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALL-------ENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCEEEECHHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCC
T ss_conf 99899999998850488888764--2673555138675677157-----999999999888-------508879997078
Q ss_pred CCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8100---8833316564231--410001347889999999854--88777321102454412037989999999998764
Q gi|254780545|r 295 RPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALM 367 (647)
Q Consensus 295 ~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~ 367 (647)
-|.. ++|-|.- ||+. .+.+..||.+.|.+||+.... +..+.+++ +..+|.+.. -+..+|+..++.-...
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~-~nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD-RNVRELEGALNRLDAF 293 (408)
T ss_pred CCHHHCCCCHHHHH--HHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 83221103588998--9863057752798889999999999986588888799-999999700-3099999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 55320242104568999750136
Q gi|254780545|r 368 AARRNRRLVTMQEFEDAKDKILM 390 (647)
Q Consensus 368 a~r~~~~~i~~~dl~~A~~rv~~ 390 (647)
+.-.+ ..||.....+++.-+..
T Consensus 294 a~~~~-~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 294 ALFTK-RAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHCC-CCCCHHHHHHHHHHHHH
T ss_conf 98538-75769999999998640
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=9.4e-10 Score=89.57 Aligned_cols=205 Identities=28% Similarity=0.393 Sum_probs=131.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-----
Q ss_conf 000011242256988985288999999999874335676642012333110037874258889999742469970-----
Q gi|254780545|r 135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF----- 209 (647)
Q Consensus 135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f----- 209 (647)
|+.|.| .+|+||.|++.+...|+-.+. ..|++...||.||-|||||-.||-+|...+|--
T Consensus 14 ~~k~rp----~~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~ 78 (600)
T PRK09111 14 ARKYRP----QTFDDLIGQEAMVRTLRNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVG 78 (600)
T ss_pred EECCCC----CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 210179----877663385999999999997-----------29842047645789878999999999996698876668
Q ss_pred ---EC--CCH-----------HHHHHHHHHCCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCC
Q ss_conf ---20--585-----------7886444203324-----599999999873780-----120632356414455789886
Q gi|254780545|r 210 ---FT--ISG-----------SDFVELFVGVGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 210 ---~~--~~~-----------s~~~~~~~g~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~ 263 (647)
.. -.+ .|++|+ .+|+ -||+|-+.+ ..+|. |..|||..-+
T Consensus 79 ~~~~~~c~~c~~c~~i~~~~~~d~~e~---daas~~~v~~~r~~~~~~-~~~p~~~~~kv~iidevhml----------- 143 (600)
T PRK09111 79 GPTIDPCGVGEHCQAIMEGRHVDVIEM---DAASHTGVDDIREIIESV-RYRPVSARYKVYIIDEVHML----------- 143 (600)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCEEEE---ECCCCCCHHHHHHHHHHH-CCCCCCCCEEEEEEECCCCC-----------
T ss_conf 998898998865898866899875885---155457888999999860-53887775469996001105-----------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf 26889889989985303235778299996298100883331-65642314100013478899-99999854887773211
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVI 341 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d 341 (647)
..+..|.||--+. +....|..|-||--|..+..-++ |--|||.+- ++..+...+. .|++ ..+...+++ -
T Consensus 144 ---s~~afnallktle--epp~~~~fi~att~~~k~p~ti~src~~f~~~~-~~~~~~~~~l~~i~~--~e~~~~~~~-a 214 (600)
T PRK09111 144 ---STAAFNALLKTLE--EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRR-IEAEVLAAHLARIAE--KEGVEVEPD-A 214 (600)
T ss_pred ---CHHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHHHEECCCC-CCHHHHHHHHHHHHH--HCCCCCCHH-H
T ss_conf ---7999999998762--598654999962853437589985441201057-999999999999998--607686677-9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 024544120379899999999987645532024210456899
Q gi|254780545|r 342 LKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 342 ~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
+..||+...| |=.|--.|+.+|.. .+...|+.+++.+
T Consensus 215 l~~ia~~a~G-S~RDaLSlLDQai~----~~~~~i~~~~v~~ 251 (600)
T PRK09111 215 LALIARAAEG-SVRDGLSLLDQAIA----HGAGEVTAEQVRD 251 (600)
T ss_pred HHHHHHHCCC-CCCHHHHHHHHHHH----CCCCCCCHHHHHH
T ss_conf 9999997489-84218999999997----2798756999999
No 109
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.2e-11 Score=98.10 Aligned_cols=144 Identities=26% Similarity=0.388 Sum_probs=93.0
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHH-HHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEEC
Q ss_conf 00011242256988-985288999999999-874335676-64201233-311003787425888999974246997020
Q gi|254780545|r 136 KLLSGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCDPQKF-KRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFT 211 (647)
Q Consensus 136 k~~~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~~~~~-~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~ 211 (647)
..-.|.+.+--.++ |.|+|.+|.-|.-.| ...|.-... .+-....- ..|||.||.|+||||||+.+|.-.+|||--
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred CCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 59986999998652432625431034664106889986048877635320317998889975779999999984898475
Q ss_pred CCHHHHHH-HHHHCCHHHH-HHH-----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf 58578864-4420332459-999-----9999873780120632356414455789886268-898899899853032
Q gi|254780545|r 212 ISGSDFVE-LFVGVGASRV-RDM-----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGF 281 (647)
Q Consensus 212 ~~~s~~~~-~~~g~g~~~v-r~l-----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~ 281 (647)
..++.+-| -|||+--.+| -.| |+-+|+. .-||||||||-|+++...-+. ..|- .|-+-..||--|.|-
T Consensus 128 ADATtLTEAGYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSen~SI-TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 128 ADATTLTEAGYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-CCEEEEECHHHHHCCCCCCCC-CCCCCCHHHHHHHHHHHCCC
T ss_conf 14441210663550089999999987645888882-885998510254205789872-34367358999999997075
No 110
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.10 E-value=2.5e-11 Score=100.96 Aligned_cols=110 Identities=29% Similarity=0.330 Sum_probs=69.6
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH--HHHHHCC---HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf 110037874258889999742469970205857886--4442033---24599999999873780120632356414455
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV--ELFVGVG---ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG 257 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~--~~~~g~g---~~~vr~lf~~a~~~~p~iifiDeida~~~~r~ 257 (647)
.|||+||||||||.+|+++|...+.+|+.+++++-. +-.+|.. ...-.-.|.... ....|+|+|||+-.-
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~-l~~~vl~lDEin~a~---- 75 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGP-IFANVLLADEINRAP---- 75 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCC-CCCCCEEEEHHHCCC----
T ss_conf 987898998769999999999959981688833776700036845423787408984573-103705640120399----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEECCCCCC-----CCHHHCCCCCC
Q ss_conf 78988626889889989985303---------235778299996298100-----88333165642
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDG---------FESSEGVILIAATNRPDV-----LDAALLRPGRF 309 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg---------~~~~~~v~vi~aTn~~~~-----lD~al~RpgRf 309 (647)
..++|.||.-|+- +.-..+..||||.|..+. |++|++- ||
T Consensus 76 ----------~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~NP~e~~G~~~L~~al~d--RF 129 (131)
T pfam07726 76 ----------PKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLD--RF 129 (131)
T ss_pred ----------HHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCHHHHC--CC
T ss_conf ----------8999999976326499779988527998499971698755576449988965--61
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.09 E-value=3e-09 Score=85.91 Aligned_cols=175 Identities=29% Similarity=0.436 Sum_probs=118.7
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 242256988-98528899999999-------98743356766420123---331-1003787425888999974246997
Q gi|254780545|r 141 NVGSVTFKD-VAGVDEAKEDLQEI-------VDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 141 ~~~~v~f~d-v~g~~~~k~~~~~~-------v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~~~~ 208 (647)
+...|.++| -.=+.+.+.+|+.. |+-|-..=|+++-|.+- |.| .||+||.|.|||=+||.+|.+.||+
T Consensus 475 P~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~ 554 (774)
T TIGR02639 475 PVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVH 554 (774)
T ss_pred CCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf 94154264479887204476301315158999999999999874247788816888864798962578899999970820
Q ss_pred EECCCHHHHHHH------------HHH--CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 020585788644------------420--332459999999987378012063235641445578988626889889989
Q gi|254780545|r 209 FFTISGSDFVEL------------FVG--VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL 274 (647)
Q Consensus 209 f~~~~~s~~~~~------------~~g--~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l 274 (647)
|+-...||.+|+ ||| +|- -|=+.-|++=-||+.+|||.= .| .=..|=|
T Consensus 555 l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGG----LLT~AvrK~P~cVLLLDEIEK-----------AH---pDI~NIL 616 (774)
T TIGR02639 555 LLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGG----LLTDAVRKHPHCVLLLDEIEK-----------AH---PDIYNIL 616 (774)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHCCCCCEEEHHHHHHH-----------HH---HHHHHHH
T ss_conf 01046504468999987416888851316777----212233128853542346666-----------31---3366678
Q ss_pred HHHHCCC--CCCC-------CEEEEEECCC-----------------CCCCCHHHCC---C---CCCCCEEEECHHHHHH
Q ss_conf 9853032--3577-------8299996298-----------------1008833316---5---6423141000134788
Q gi|254780545|r 275 LVEMDGF--ESSE-------GVILIAATNR-----------------PDVLDAALLR---P---GRFDRQITVPNPDIVG 322 (647)
Q Consensus 275 l~~mdg~--~~~~-------~v~vi~aTn~-----------------~~~lD~al~R---p---gRfd~~i~~~~P~~~~ 322 (647)
|.=||-- ..|. +||+|.+||- -+..+.|+-+ | =|+|-.|.|+.-+.+-
T Consensus 617 LQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~ 696 (774)
T TIGR02639 617 LQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEV 696 (774)
T ss_pred HHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHH
T ss_conf 76633543405888576311368884037001023677644255541233488897315874201334644169988999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998548
Q gi|254780545|r 323 REHILMVHSRN 333 (647)
Q Consensus 323 r~~i~~~~~~~ 333 (647)
-..|.+..+..
T Consensus 697 ~~~i~~K~l~e 707 (774)
T TIGR02639 697 AEKIVKKFLDE 707 (774)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 112
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-09 Score=88.63 Aligned_cols=47 Identities=49% Similarity=0.745 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 2569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
...|.||.|++.+|..|.... ---+++||+|||||||||||+-+.+=
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 766666438499999999998--------------43886787569988656764231025
No 113
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.08 E-value=1.1e-10 Score=96.19 Aligned_cols=173 Identities=24% Similarity=0.365 Sum_probs=111.8
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHH------HHHHHHH----------HCCCC-CCEEECCCCCHHHHHHHH
Q ss_conf 11242256988-985288999999999-87433------5676642----------01233-311003787425888999
Q gi|254780545|r 139 SGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCD------PQKFKRL----------GGRIP-HGVLLVGPPGTGKTLLAR 199 (647)
Q Consensus 139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~------~~~~~~~----------g~~~p-~g~ll~GppGtGKTlla~ 199 (647)
.|.+.+--.|| |.|+|+||.-|.=.| ...|. -.++..- -+.+- ..|||.||-|.||||||+
T Consensus 91 ~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAq 170 (452)
T TIGR00382 91 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQ 170 (452)
T ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 82799997213612310105254324112466653243045558840002354444433300662454688852689999
Q ss_pred HHHCCCCCCEECCCHHHHHH-HHHHCCHHH-HHHHHHHHH----HHCCHHEEHHHHHHHHCCCCCCC----CCCCHHHHH
Q ss_conf 97424699702058578864-442033245-999999998----73780120632356414455789----886268898
Q gi|254780545|r 200 AVAGEANVPFFTISGSDFVE-LFVGVGASR-VRDMFEQAK----NNSPCIVFVDEIDAVGRHRGIGL----GGGNDEREQ 269 (647)
Q Consensus 200 a~a~e~~~~f~~~~~s~~~~-~~~g~g~~~-vr~lf~~a~----~~~p~iifiDeida~~~~r~~~~----~~~~~e~~~ 269 (647)
.+|...+|||--..++.+-| -|||+---+ +..|.+.|- +..--||||||||=|+|+....+ .+| |.
T Consensus 171 TLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSG--EG-- 246 (452)
T TIGR00382 171 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSG--EG-- 246 (452)
T ss_pred HHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECC--CH--
T ss_conf 99987388742111110200664242288999999874145524527850898422310121577801122175--54--
Q ss_pred HHHHHHHHHCCCCCC-------------------CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHH
Q ss_conf 899899853032357-------------------7829999629810088333165642314100013
Q gi|254780545|r 270 TLNQLLVEMDGFESS-------------------EGVILIAATNRPDVLDAALLRPGRFDRQITVPNP 318 (647)
Q Consensus 270 ~ln~ll~~mdg~~~~-------------------~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P 318 (647)
+=-.||--+.|--.+ .+|+.||+=- =+-||.-+-+ |+.....+|.-
T Consensus 247 VQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGA-F~GL~~iI~~--R~~~~~~iGF~ 311 (452)
T TIGR00382 247 VQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGA-FVGLEKIIKK--RTEKKSSIGFG 311 (452)
T ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCH-HHHHHHHHHH--HHCCCCCCCCC
T ss_conf 99999987603234317544886886576886476400110543-4448999988--74555333545
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.4e-09 Score=86.67 Aligned_cols=186 Identities=28% Similarity=0.470 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EE------C
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997-------02------0
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FF------T 211 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~------~ 211 (647)
-+|++|.|++++...|...++ ..|+....||+||.|||||-+||-+|...+|. .= .
T Consensus 13 ~~f~e~vGQ~~v~~~l~nal~-----------~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~ 81 (816)
T PRK07003 13 KDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (816)
T ss_pred CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 857662384999999999997-----------098631475117898888899999999867899999897877555787
Q ss_pred CC-H--HHHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 58-5--78864442--0332459999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 212 IS-G--SDFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 212 ~~-~--s~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
|. | .|++|+=. .-|-..+|+|.+.+ ..+| -|.+|||..-+- ....|.||.-+.
T Consensus 82 i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~-~y~p~~~r~KvyiiDEvHmls--------------~~afnalLKtlE-- 144 (816)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERA-VYAPVDARFKVYMIDEVHMLT--------------NHAFNAMLKTLE-- 144 (816)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--
T ss_conf 755887754786355435768999999862-247866744799984154339--------------999999998403--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
+..+.|++|-||..|+.|...+| |--||+.+- ++.-+...+ |..-+ .++..+++ -|..||+...| |=.|--
T Consensus 145 epP~hv~FilaTTd~~k~p~tilSRc~~f~l~~-~~~~~i~~~---l~~i~~~E~i~~e~~-al~lia~~a~G-smRDal 218 (816)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ-MPAGHIVSH---LERILGEERIAFEPQ-ALRLLARAAQG-SMRDAL 218 (816)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHH
T ss_conf 798664899955880115288987776522367-999999999---999999829977999-99999997677-378888
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780545|r 359 NLVNEA 364 (647)
Q Consensus 359 ~~~~eA 364 (647)
.|...|
T Consensus 219 sl~dQa 224 (816)
T PRK07003 219 SLTDQA 224 (816)
T ss_pred HHHHHH
T ss_conf 599999
No 115
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.07 E-value=8.1e-09 Score=82.79 Aligned_cols=187 Identities=30% Similarity=0.432 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EECC-----
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997-------0205-----
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FFTI----- 212 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~~~----- 212 (647)
.+|+||.|++.+...|+..+.. .|++.+.||.||-|||||-+||-+|...++. +-..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred CCHHHHCCCHHHHHHHHHHHHH-----------CCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 0077763648999999999980-----------84233365137777671049999999956889877772253166686
Q ss_pred ----CHHHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ----857886444203324-----59999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r 213 ----SGSDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 213 ----~~s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
+..|.+|+ .+|+ -||++-+++ ..+| =|..|||..-+ ..+.-|.||--+
T Consensus 82 I~~g~~~DviEi---DaASn~gVddiR~i~e~v-~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTL 143 (515)
T COG2812 82 INEGSLIDVIEI---DAASNTGVDDIREIIEKV-NYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTL 143 (515)
T ss_pred HHCCCCCCCHHH---HHHHCCCHHHHHHHHHHH-CCCCCCCCCEEEEEECHHHH--------------HHHHHHHHHCCC
T ss_conf 514886410113---644454867999999872-46886666418998318764--------------378888875111
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 03235778299996298100883331-656423141000134788999999985--488777321102454412037989
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGA 355 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgA 355 (647)
. +....|+.|-||--|+.+.+-++ |--|||.+- +|.. .-..-|+..+ +++..+++ -+..+|+...| |-.
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkr---i~~~-~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R 215 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILSRCQRFDFKR---LDLE-EIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR 215 (515)
T ss_pred C--CCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCC---CCHH-HHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHH
T ss_conf 3--686674899853886768404552122022257---9999-99999999987448754799-99999998289-745
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999987645
Q gi|254780545|r 356 DLRNLVNEAALMA 368 (647)
Q Consensus 356 di~~~~~eAa~~a 368 (647)
|..+++..|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHCC
T ss_conf 6777899999706
No 116
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=7.4e-10 Score=90.33 Aligned_cols=183 Identities=31% Similarity=0.475 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-------------CC
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702-------------05
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-------------TI 212 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-------------~~ 212 (647)
+|+||.|++++...|...++- .|++...||.||.|||||-+||.+|...+|.-= .+
T Consensus 14 ~f~~~vGQ~~v~~~l~na~~~-----------~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i 82 (643)
T PRK07994 14 TFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (643)
T ss_pred CHHHHCCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 666653879999999999982-----------986634874589988888999999999679999999978767768988
Q ss_pred CHH---HHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 857---886444203324-----59999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r 213 SGS---DFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 213 ~~s---~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
... |++|+ .+|+ .+|+|.+.+ ..+| -|..|||..-+- .+..|.||.-+.
T Consensus 83 ~~g~~~d~~ei---daas~~~vd~~rel~~~~-~y~p~~~r~kvyiidEvhmls--------------~~afnalLKtlE 144 (643)
T PRK07994 83 EQGRFVDLIEI---DAASRTKVEDTRDLLDNV-QYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLE 144 (643)
T ss_pred HCCCCCCEEEE---ECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC
T ss_conf 65898875886---367778889999999844-668877853699972210158--------------999999998623
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 3235778299996298100883331-6564231410001347889-9999998548877732110245441203798999
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGR-EHILMVHSRNVPLAPNVILKTIARGTPGFSGADL 357 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r-~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi 357 (647)
+..+.|++|-||--|+.|.+-++ |--||+.+ .++..+...+ ..|+. -.+++.+++ -+..||+...| |=.|-
T Consensus 145 --ePp~hv~filaTT~~~k~p~TilSRC~~f~~~-~~~~~~i~~~l~~i~~--~e~i~~~~~-al~~ia~~a~g-s~rda 217 (643)
T PRK07994 145 --EPPAHVKFLLATTDPQKLPVTILSRCLQFHLK-ALDVEQIRHQLEHILN--EEHIAHEPR-ALQLLARAADG-SLRDA 217 (643)
T ss_pred --CCCHHCEEEEECCCHHHCCHHHHHHHHHEECC-CCCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHH
T ss_conf --78610089986077454847899777650016-6999999999999999--759987889-99999997478-65668
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780545|r 358 RNLVNEA 364 (647)
Q Consensus 358 ~~~~~eA 364 (647)
-.|...|
T Consensus 218 lsl~dq~ 224 (643)
T PRK07994 218 LSLTDQA 224 (643)
T ss_pred HHHHHHH
T ss_conf 8899999
No 117
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.6e-09 Score=86.41 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEE--CCC--
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469-------9702--058--
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFF--TIS-- 213 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~--~~~-- 213 (647)
-+|+++.|+++++..|...+. ..++|.+.||+||+|+|||.+|.++|...- .|-- ...
T Consensus 20 r~~~~liGq~~~~~~L~~a~~-----------~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~ 88 (352)
T PRK09112 20 SENNRLFGHEEARAFLAQAYR-----------EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPA 88 (352)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 446462786999999999998-----------499652465358998089999999999986699866686556788878
Q ss_pred -----------HHHHHHHHH-----------HCCHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf -----------578864442-----------0332459999999987378----01206323564144557898862688
Q gi|254780545|r 214 -----------GSDFVELFV-----------GVGASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDER 267 (647)
Q Consensus 214 -----------~s~~~~~~~-----------g~g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~ 267 (647)
.++++...- ..+...||++-+.....++ -|+.|||.|.+ .
T Consensus 89 ~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m--------------~ 154 (352)
T PRK09112 89 SPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM--------------N 154 (352)
T ss_pred CHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH--------------H
T ss_conf 77899997489999565534322021454335777999999998454886688069998187874--------------6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 98899899853032357782999962981008833316564231410001347889999999854887773211024544
Q gi|254780545|r 268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIAR 347 (647)
Q Consensus 268 ~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~ 347 (647)
.+.-|.||--|. +...++++|-.||.|+.|-|.++= |- +++.+.+.+.+.-.+.|+.-..+.+...+-.+..++.
T Consensus 155 ~~aaNALLK~LE--EPp~~~~fiLit~~~~~ll~TI~S--RC-q~~~f~pL~~~di~~~L~~i~~~~~~~~~~~~~~l~~ 229 (352)
T PRK09112 155 RNAANAILKTLE--EPPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSKQGISAGEETEALLQ 229 (352)
T ss_pred HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--HC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999853--489874899886997777689997--43-3214889398999999998751268998799999998
Q ss_pred HHHCCCHH
Q ss_conf 12037989
Q gi|254780545|r 348 GTPGFSGA 355 (647)
Q Consensus 348 ~t~g~sgA 355 (647)
.+.|=-|.
T Consensus 230 ~a~GS~~~ 237 (352)
T PRK09112 230 RSEGSVRK 237 (352)
T ss_pred HHCCCHHH
T ss_conf 70899889
No 118
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=7.9e-10 Score=90.10 Aligned_cols=185 Identities=28% Similarity=0.444 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC-----CH------
Q ss_conf 6988985288999999999874335676642012333110037874258889999742469970205-----85------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI-----SG------ 214 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-----~~------ 214 (647)
+|+||.|+++++..|...+.. .|+....||+||.|+|||.+||.+|...+|.-=.. .+
T Consensus 14 ~F~e~vGQ~~v~~~L~nal~~-----------~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i 82 (704)
T PRK08691 14 TFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (704)
T ss_pred CHHHHCCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 475641869999999999981-----------997523750278987888999999999679999999978777767878
Q ss_pred -----HHHHHHHH--HCCHHHHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----78864442--03324599999999873780-----1206323564144557898862688988998998530323
Q gi|254780545|r 215 -----SDFVELFV--GVGASRVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 215 -----s~~~~~~~--g~g~~~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
.|++|+-- --|-..+|+|.+.+ ..+|. |..|||..-+- .+..|.||.-+. +
T Consensus 83 ~~g~~~D~~EiDaAs~~~vdd~R~l~~~~-~y~P~~~~yKVyiiDEvhmLs--------------~~afNAlLKtLE--E 145 (704)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENA-QYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLE--E 145 (704)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--C
T ss_conf 55899874774245445889999999853-468867853599983154438--------------999999998614--7
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 5778299996298100883331-656423141000134788999999985--4887773211024544120379899999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRN 359 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~ 359 (647)
..+.|++|-||..|+.|-..+| |--||+.+- ++......+ |+.-+ .+++.+++ -+..||+...| |=.|--+
T Consensus 146 PP~~v~FilaTTdp~Klp~TIlSRC~~f~l~~-~~~~~i~~~---L~~i~~~E~i~~e~~-al~~ia~~a~G-s~RDals 219 (704)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLSRCLQFVLRN-MTAQQVADH---LAHVLDSEKIAYEPP-ALQLLGRAAAG-SMRDALS 219 (704)
T ss_pred CCCCEEEEEECCCHHHCCHHHHHHHHHHCCCC-CCHHHHHHH---HHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHHH
T ss_conf 97560899854884647589998887710268-999999999---999999839856899-99999997578-5777988
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780545|r 360 LVNEA 364 (647)
Q Consensus 360 ~~~eA 364 (647)
|...|
T Consensus 220 lldQa 224 (704)
T PRK08691 220 LLDQA 224 (704)
T ss_pred HHHHH
T ss_conf 99999
No 119
>KOG0741 consensus
Probab=99.06 E-value=5.5e-09 Score=84.01 Aligned_cols=139 Identities=30% Similarity=0.469 Sum_probs=95.1
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf 333110037874258889999742469970205857886444203324----5999999998737801206323564144
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~ 255 (647)
+-.-+||+||||+|||-||--+|-..+.||+.+-.++ -.+|.+++ .++..|+.|.+.--+||.+|+|.-+-.-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH---HHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC
T ss_conf 6358998669988768899999752799847973778---7037466788999999888763386508998155656200
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCCCHH-HCCCCCCCCEEEECHHHH-HHHHHHHH
Q ss_conf 557898862688988998998530323577--82999962981008833-316564231410001347-88999999
Q gi|254780545|r 256 RGIGLGGGNDEREQTLNQLLVEMDGFESSE--GVILIAATNRPDVLDAA-LLRPGRFDRQITVPNPDI-VGREHILM 328 (647)
Q Consensus 256 r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~--~v~vi~aTn~~~~lD~a-l~RpgRfd~~i~~~~P~~-~~r~~i~~ 328 (647)
-.-|.- -..-+|..|++.+-- .... ..+|+|+|.+-+.|-.- ++- -|+-.|.||.-.. +.-.+++.
T Consensus 614 vpIGPR----fSN~vlQaL~VllK~-~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741 614 VPIGPR----FSNLVLQALLVLLKK-QPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred CCCCCC----HHHHHHHHHHHHHCC-CCCCCCEEEEEECCCHHHHHHHCCHHH--HHHHEEECCCCCCHHHHHHHHH
T ss_conf 246840----357999999999524-898884599996240799999727787--5111054675686478999999
No 120
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=7.6e-10 Score=90.22 Aligned_cols=130 Identities=33% Similarity=0.482 Sum_probs=86.7
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEE----CCCHHHHHHHHH--HCCH----HHHHHHHHHHHHH
Q ss_conf 012333110037874258889999742469-------9702----058578864442--0332----4599999999873
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFF----TISGSDFVELFV--GVGA----SRVRDMFEQAKNN 239 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~----~~~~s~~~~~~~--g~g~----~~vr~lf~~a~~~ 239 (647)
-.+..+-|+|.||||||||.+||.+|...+ +-++ +-|-.+|+.-|. +.|- -...++-++|+++
T Consensus 190 sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHC
T ss_conf 85458827965899988789999999997078877846899835886617876460568886132683699999999849
Q ss_pred --CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--------------------CCCCCCEEEEEECCCCC
Q ss_conf --78012063235641445578988626889889989985303--------------------23577829999629810
Q gi|254780545|r 240 --SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--------------------FESSEGVILIAATNRPD 297 (647)
Q Consensus 240 --~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--------------------~~~~~~v~vi~aTn~~~ 297 (647)
.|+++.||||. || |- ++...+||+.|.- |.-.+++.+||+-|-.|
T Consensus 270 p~~~y~~iidein-----r~------~~--~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtad 336 (459)
T PRK11331 270 PEKKYVFIIDEIN-----RA------NL--SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD 336 (459)
T ss_pred CCCCEEEEEEHHH-----CC------CH--HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCC
T ss_conf 8987699984320-----33------88--99999999996412567652256300368885334688659998503341
Q ss_pred ----CCCHHHCCCCCCCCEEEECHHHHH
Q ss_conf ----088333165642314100013478
Q gi|254780545|r 298 ----VLDAALLRPGRFDRQITVPNPDIV 321 (647)
Q Consensus 298 ----~lD~al~RpgRfd~~i~~~~P~~~ 321 (647)
.+|-||.| ||...=..|-++..
T Consensus 337 rs~~~~d~alrR--rf~f~~~~pd~d~~ 362 (459)
T PRK11331 337 RSLAVVDYALRR--RFSFIDIEPGFDTP 362 (459)
T ss_pred HHHHHHHHHHHH--HHCCEECCCCCCHH
T ss_conf 068878999986--50212158986605
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.9e-09 Score=85.10 Aligned_cols=183 Identities=22% Similarity=0.390 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE------------
Q ss_conf 69889852889999999998743----35676642012333110037874258889999742469970------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLC----DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF------------ 209 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~----~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f------------ 209 (647)
.|+||.|+++++..|+..+.-=+ .+ .-...++....||+||+|+|||.+|+++|....++=
T Consensus 3 ~f~~ivGQe~v~~~L~~A~~~~R~~~~~~---~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C 79 (395)
T PRK07940 3 VWDRLVGQDAVVAELRAAARAARADSAHS---AAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRAC 79 (395)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 70131592999999999998363434433---334687660376368998788999999999966999999999878789
Q ss_pred ---ECCCHHHHHHHHH-H--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---2058578864442-0--332459999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r 210 ---FTISGSDFVELFV-G--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 210 ---~~~~~s~~~~~~~-g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
..-+.+|+....- | .+-..||+|-+.+.. +| -|+.|||.|.+ .++.-|.||--+
T Consensus 80 ~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~-~p~~~~~kv~ii~~a~~m--------------~~~a~NalLKtL 144 (395)
T PRK07940 80 RTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAAR-RPTTGRWRIVVIEDADRL--------------TERAANALLKAV 144 (395)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEEECHHHH--------------CHHHHHHHHHHH
T ss_conf 99876899871898268776889999999999852-730379559998077874--------------899999999852
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 03235778299996298100883331656423141000134788999999985488777321102454412037989
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGA 355 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgA 355 (647)
. +...++++|=+|+.|+.|=|-++= |- ++|.+..|+.+.-.+.|. ++...+++ ....+|..+.|--|-
T Consensus 145 E--EPp~~~~fiL~t~~~~~llpTI~S--Rc-q~~~f~~~~~~~i~~~L~---~~~gi~~~-~A~~aA~~s~G~igr 212 (395)
T PRK07940 145 E--EPPPRTVWLLCAPSVEDVLPTIRS--RC-RHVALRTPSVEAVADVLV---RRDGVDPE-TAQWAARASGGHIGR 212 (395)
T ss_pred C--CCCCCEEEEEEECCHHHHHHHHHH--HH-EECCCCCCCHHHHHHHHH---HCCCCCHH-HHHHHHHHHCCCHHH
T ss_conf 1--788886999873997874468874--40-002379999999999998---70199989-999999980898899
No 122
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.3e-09 Score=88.57 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE---------E-CCCH
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970---------2-0585
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF---------F-TISG 214 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f---------~-~~~~ 214 (647)
.+|+||.|++++...|...++. .|+....||.||-|+|||.+||-+|...+|-- - .-.+
T Consensus 13 ~~F~~~vGQ~~v~~~l~na~~~-----------~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C 81 (721)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQC 81 (721)
T ss_pred CCHHHHCCCHHHHHHHHHHHHC-----------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 8665532859999999999971-----------99754475027998889899999999976899866789878878776
Q ss_pred HHHHHHHHH--------CCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 788644420--------3324-----599999999873780-----1206323564144557898862688988998998
Q gi|254780545|r 215 SDFVELFVG--------VGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276 (647)
Q Consensus 215 s~~~~~~~g--------~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~ 276 (647)
....+.--| .+|+ .+|+|.+.+ ..+|. |..|||..-+- ....|.||.
T Consensus 82 ~~C~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~-~y~P~~~~~KvyiiDevhmls--------------~~afnalLK 146 (721)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDQA-VYAPTAGRFKVYMIDEVHMLT--------------NHAFNAMLK 146 (721)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECCCCCC--------------HHHHHHHHH
T ss_conf 54687756898764774367678889999999854-558876644699985400058--------------999999998
Q ss_pred HHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf 5303235778299996298100883331-65642314100013478899-999998548877732110245441203798
Q gi|254780545|r 277 EMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVILKTIARGTPGFSG 354 (647)
Q Consensus 277 ~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d~~~la~~t~g~sg 354 (647)
-+. +....|++|-||-.|+.|..-+| |--||+.+- ++..+...+. .|+. -.++..++ --+..||+...| |=
T Consensus 147 tlE--ePP~hv~FilaTT~~~Kip~TilSRc~~f~~~~-~~~~~i~~~l~~i~~--~E~i~~~~-~al~~ia~~a~G-s~ 219 (721)
T PRK12323 147 TLE--EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ-MPPGHIVSHLDAILG--QEGIGHEG-NALRLLAQAAHG-SM 219 (721)
T ss_pred HHC--CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHH--HCCCCCCH-HHHHHHHHHCCC-CH
T ss_conf 401--797553899943863448588987765423478-999999999999999--83997799-999999997589-64
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999999987645532024210456899
Q gi|254780545|r 355 ADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 355 Adi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
.|--.|+..|--+. ...|+.+++..
T Consensus 220 RDalslldQaia~~----~g~~~~~~v~~ 244 (721)
T PRK12323 220 RDALSLTDQAIAYS----AGNVSEEAVRG 244 (721)
T ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHH
T ss_conf 76888999999865----89626999999
No 123
>KOG1942 consensus
Probab=99.03 E-value=1.6e-08 Score=80.72 Aligned_cols=72 Identities=39% Similarity=0.556 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHC
Q ss_conf 988985288999999999874335676642012333110037874258889999742469--970205857886444203
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGV 224 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~ 224 (647)
-+-+.|++++.+..--||+..|. ++| .-|++||.||||||||-||-|++.|.| +||-.+.||+..+--|--
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~----Kkm---aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942 37 AAGFVGQENAREAAGIIVDLIKS----KKM---AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH----HHC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 44511526666551089999986----632---67279973699876568999999974799985666410555434557
Q ss_pred C
Q ss_conf 3
Q gi|254780545|r 225 G 225 (647)
Q Consensus 225 g 225 (647)
+
T Consensus 110 T 110 (456)
T KOG1942 110 T 110 (456)
T ss_pred H
T ss_conf 8
No 124
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-08 Score=81.32 Aligned_cols=90 Identities=33% Similarity=0.551 Sum_probs=69.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 6988-985288999999999874335676642012-----3331100378742588899997424699702058578864
Q gi|254780545|r 146 TFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 146 ~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
..+. |.|+++||..+. --|+|..+-..+-.. .||.+|+.||.|.|||=+||-+|.=++.||+.+-++.|-|
T Consensus 12 eLd~yIIGQ~~AKkaVA---IALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTE 88 (444)
T COG1220 12 ELDRYIIGQDEAKKAVA---IALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTE 88 (444)
T ss_pred HHHHHHCCCHHHHHHHH---HHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 98767407177788999---999989999754787762257553588888887688999999998489837887642134
Q ss_pred H-HHHC-CHHHHHHHHHHHHH
Q ss_conf 4-4203-32459999999987
Q gi|254780545|r 220 L-FVGV-GASRVRDMFEQAKN 238 (647)
Q Consensus 220 ~-~~g~-g~~~vr~lf~~a~~ 238 (647)
. |||- -++-||||-+.|-+
T Consensus 89 VGYVGrDVesivRDLve~av~ 109 (444)
T COG1220 89 VGYVGRDVESIIRDLVEIAVK 109 (444)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 032564589999999999999
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.01 E-value=2e-08 Score=79.89 Aligned_cols=224 Identities=19% Similarity=0.261 Sum_probs=129.1
Q ss_pred CCCHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCH
Q ss_conf 242256988-9852889--99999999874335676642012333110037874258889999742469---97020585
Q gi|254780545|r 141 NVGSVTFKD-VAGVDEA--KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISG 214 (647)
Q Consensus 141 ~~~~v~f~d-v~g~~~~--k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~ 214 (647)
-.|+-||+. |.|-... -...+.+. +.|..- ++.+=.-+.+||++|.|||.|..|++++.. ...+++++
T Consensus 104 lNp~ytFd~FVvG~~N~lA~~aa~~va---~~~~~~---~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvta 177 (455)
T PRK12422 104 VDPEMTFANFLVTPENDLPFRILQEFA---KVSEQG---KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSS 177 (455)
T ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHH---HCCCCC---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 897783558331586099999999998---375535---88767875887899997899999999985379986999749
Q ss_pred HHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 7886444203-324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r 215 SDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 215 s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
.+|..-|+.. ....+ +-|..--++. -++.||+|.-++++..+ .+|=-+|.|.|. .+..-||+++.
T Consensus 178 e~F~~~~v~ai~~~~~-~~Fr~~yr~~-DvLLIDDIQfl~gK~~t-----qeEff~tfN~L~-------~~~KQIVitsD 243 (455)
T PRK12422 178 ELFTEHLVSAIRSGEM-QRFRSFYRNV-DALFIEDIEVFSGKGAT-----QEEFFHTFNSLH-------TEGKLIVISSS 243 (455)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHCC-CEEEEEHHHHHHCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf 9999999999975889-9999999638-87763147887284889-----999999999999-------85996999689
Q ss_pred CCCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98100---8833316564231--4100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r 294 NRPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 294 n~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
-.|.. |++-|.- ||.. .+.+..||.+.|.+||+..++. ..+++++ ++.+|.... -+-.+|+..+|.-..
T Consensus 244 r~P~el~~l~~RL~S--Rf~~GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev-~~~iA~~i~-~niReLeGal~~l~~ 319 (455)
T PRK12422 244 YAPGDLKAMEERLIS--RFEWGIAIPIHPLTREGLRSFLMRQAEQLSIRIEETA-LDFLIQALS-SNVKTLLHALTLLAK 319 (455)
T ss_pred CCHHHHHHHHHHHHH--HHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 895765126899998--8637613216899989999999999987188884468-999999975-517999999999999
Q ss_pred HHH--HHHCCCCCHHHHHHHHHHC
Q ss_conf 455--3202421045689997501
Q gi|254780545|r 367 MAA--RRNRRLVTMQEFEDAKDKI 388 (647)
Q Consensus 367 ~a~--r~~~~~i~~~dl~~A~~rv 388 (647)
.++ +.....++.+.+...+..+
T Consensus 320 ~~~~~~~~~~~i~~~~~~~~l~d~ 343 (455)
T PRK12422 320 RVAYKKLSHQLLYEDDIKALLHDV 343 (455)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999871568836499999999987
No 126
>PRK08903 hypothetical protein; Validated
Probab=99.01 E-value=5.2e-09 Score=84.21 Aligned_cols=170 Identities=16% Similarity=0.164 Sum_probs=103.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCC
Q ss_conf 1003787425888999974246---9970205857886444203324599999999873780120632356414455789
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL 260 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~ 260 (647)
+.+|||+|+|||.|.+|+++++ +....+++..++.+ .|..++ ....+.||+||.+....
T Consensus 45 l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~------------~~~~~~--~~d~l~iDDi~~i~~~~---- 106 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLL------------AFDFDP--RAELYAVDDVERLDDAQ---- 106 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH------------HHHHHH--CCCEEEEECCCCCCCHH----
T ss_conf 999899999888999999999980699749965110457------------774200--18989996411489569----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC--CHHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC--CC
Q ss_conf 886268898899899853032357782999962981008--83331656423--1410001347889999999854--88
Q gi|254780545|r 261 GGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL--DAALLRPGRFD--RQITVPNPDIVGREHILMVHSR--NV 334 (647)
Q Consensus 261 ~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l--D~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~--~~ 334 (647)
..+--.++|.+. +....++++++.--|..+ +|-|.= ||- -.+.+..||.+.|..||+.+.. +.
T Consensus 107 ---q~~lF~l~N~~~------~~~~~~ll~s~~~~p~~l~~~~DL~S--Rl~~gl~~~i~~pdde~~~~iL~~~a~~rgl 175 (227)
T PRK08903 107 ---QIALFNLFNRVR------AHGKTALLVAGPAAPLALDVREDLRT--RLGWGLVYEVKPLSDEDKIAALKAAAAERGL 175 (227)
T ss_pred ---HHHHHHHHHHHH------HCCCCEEEECCCCCHHHCCCCHHHHH--HHHCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf ---999999999999------72994899718997120120089999--9938973899797999999999999996299
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 777321102454412037989999999998764553202421045689997
Q gi|254780545|r 335 PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 335 ~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
.++++| ++.|+++.+ -+-..|..+++.--..+.. .++.||..-+.+.+
T Consensus 176 ~l~~~v-~~yl~~r~~-R~~~~L~~~l~~Ld~~sl~-~kr~iTi~lvkevL 223 (227)
T PRK08903 176 QLADEV-PDYLLTHFR-RDMPSLMALLDALDRYSLE-QKRAVTLPLLREML 223 (227)
T ss_pred CCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHH
T ss_conf 998899-999999834-7899999999999999998-29999999999985
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.00 E-value=3.5e-08 Score=78.23 Aligned_cols=209 Identities=16% Similarity=0.200 Sum_probs=125.3
Q ss_pred CCCHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHH
Q ss_conf 242256988-9852-889999999998743356766420123331100378742588899997424---69970205857
Q gi|254780545|r 141 NVGSVTFKD-VAGV-DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGS 215 (647)
Q Consensus 141 ~~~~v~f~d-v~g~-~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s 215 (647)
-.++.||++ |.|- ..+-..++.++ +. -+...++=+.+|||+|+|||.|.+|++.+ .+.+.++++..
T Consensus 12 l~~~~tfdnFi~g~N~~a~~~~~~l~---~~------~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~ 82 (234)
T PRK05642 12 LRDDATFANYYPGANAAALGYVERLC---EA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCCCHHCCCCCCCHHHHHHHHHHH---HC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 99977730357187599999999987---60------6787788389988999988999999999998079967997899
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
++..... ++|+.-+. . .++.||.||.+..++.. ..+=-.+.|++. .+..-++++++..
T Consensus 83 ~~~~~~~--------~~~~~l~~-~-d~l~IDDi~~i~g~~~~-----e~~lF~l~N~~~-------~~~~~llits~~~ 140 (234)
T PRK05642 83 ELLDRGP--------ELLDNLEQ-Y-ELVCIDDLDVIAGKADW-----EEALFHLFNRLR-------DSGRRLLLAASKS 140 (234)
T ss_pred HHHHHHH--------HHHHHHHH-C-CEEEEECHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCCC
T ss_conf 9875449--------99862422-7-98989364554688599-----999999999999-------8399599957879
Q ss_pred CCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 10088---3331656423--1410001347889999999854--887773211024544120379899999999987645
Q gi|254780545|r 296 PDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA 368 (647)
Q Consensus 296 ~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a 368 (647)
|..++ |-|.= ||- -.+.+..||.+.|.+||+.+.. +..++++| ++.++++.. -+-.+|.++++.=-..+
T Consensus 141 P~~l~~~l~DL~S--Rl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v-~~yl~~r~~-R~~~~L~~~l~~Ld~~s 216 (234)
T PRK05642 141 PRELPVKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV-GHFILTRGT-RSMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf 5552300167999--9957812751489989999999999775468999899-999999735-88999999999999999
Q ss_pred HHHHCCCCCHHHHHHHH
Q ss_conf 53202421045689997
Q gi|254780545|r 369 ARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 369 ~r~~~~~i~~~dl~~A~ 385 (647)
. ..++.||..-+.+.+
T Consensus 217 l-~~kr~iTiplvk~vL 232 (234)
T PRK05642 217 L-QAQRKLTIPFLKETL 232 (234)
T ss_pred H-HHCCCCCHHHHHHHH
T ss_conf 9-838999999999983
No 128
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.99 E-value=3.8e-08 Score=77.91 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH
Q ss_conf 4225698898-5-28899999999987433567664201233311003787425888999974246---99702058578
Q gi|254780545|r 142 VGSVTFKDVA-G-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD 216 (647)
Q Consensus 142 ~~~v~f~dv~-g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~ 216 (647)
..+.||++.. | ..++...++..+ . . .+..-+.+|||+|+|||.|..|+++++ +...++++...
T Consensus 16 ~~~~tfdnFi~g~n~~~~~al~~~~---~------~---~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNVL---R------Q---EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK 83 (235)
T ss_pred CCCCCHHCCCCCCCHHHHHHHHHHH---H------C---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 9976630234488699999999998---5------7---89876999899998889999999999970798579987798
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8644420332459999999987378012063235641445578988626889----889989985303235778299996
Q gi|254780545|r 217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
+.+ ..-++++..+ .-.+|.||.||.+..+. +.+ .+.|.+. +...+-+|+++
T Consensus 84 ~~~--------~~~~~l~~l~--~~dll~iDDi~~i~g~~---------~~ee~lF~l~N~~~------~~g~~~ll~ts 138 (235)
T PRK08084 84 RAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE---------LWEMAIFDLYNRIL------ESGKTRLLITG 138 (235)
T ss_pred HHH--------HHHHHHHHHH--HCCEEEEECHHHHCCCH---------HHHHHHHHHHHHHH------HHCCCEEEEEC
T ss_conf 665--------1799998764--18989982745546997---------89999999999999------84896699967
Q ss_pred CCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 29810088---3331656423--141000134788999999985--4887773211024544120379899999999987
Q gi|254780545|r 293 TNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA 365 (647)
Q Consensus 293 Tn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa 365 (647)
...|..++ |-|.= ||- -.+.+..||.+.|.+||+... ++..++++| ++.|+++.+ -+-.+|..+++.=-
T Consensus 139 ~~~P~~l~~~l~DL~S--Rl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V-~~yl~~~~~-R~~~~L~~~l~~Ld 214 (235)
T PRK08084 139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLD-REMRTLFMTLDQLD 214 (235)
T ss_pred CCCHHHCCCCCHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 9882430231288999--9956972785599989999999999997399999899-999998615-88999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHH
Q ss_conf 64553202421045689997
Q gi|254780545|r 366 LMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 366 ~~a~r~~~~~i~~~dl~~A~ 385 (647)
..+ -..++.||..-+.+.+
T Consensus 215 ~~S-l~~kr~iTip~vkevL 233 (235)
T PRK08084 215 KAS-ITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHH-HHCCCCCCHHHHHHHH
T ss_conf 999-9819999999999996
No 129
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.97 E-value=2.1e-08 Score=79.84 Aligned_cols=163 Identities=22% Similarity=0.362 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHH
Q ss_conf 225698898528899999999987433567664201233311003787425888999974246---99702058578864
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVE 219 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~ 219 (647)
..+.++|..|+|..|+.|.+ |-+.|.+ +.|...+||+|..||||+-|.||+.++- |.-++.+.-.++..
T Consensus 23 d~v~l~~L~Gie~Qk~~l~~------NT~~F~~--G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~ 94 (248)
T pfam05673 23 DPVDLDDLVGIDRQKEALLR------NTEQFLA--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGD 94 (248)
T ss_pred CCCCHHHHCCHHHHHHHHHH------HHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf 98998893493999999999------9999980--898613676768989888999999998631495699987888721
Q ss_pred HHHHCCHHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCEEEEEECCCC
Q ss_conf 4420332459999999987-3780120632356414455789886268898899899853032--357782999962981
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF--ESSEGVILIAATNRP 296 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~--~~~~~v~vi~aTn~~ 296 (647)
+-+|++.-+. .-..|||+|++-- ..+| ..-..|-+-|||= ...++|++-|++||-
T Consensus 95 ---------Lp~i~~~l~~~~~kFIiF~DDLSF----------e~~d---~~yk~LKs~LeG~l~~~p~NvliYaTSNRR 152 (248)
T pfam05673 95 ---------LPDIVDLLRGRPYRFILFCDDLSF----------EEGE---SSYKALKSVLEGGLEARPDNVLIYATSNRR 152 (248)
T ss_pred ---------HHHHHHHHHCCCCCEEEEECCCCC----------CCCC---HHHHHHHHHHCCCCCCCCCEEEEEEECCCH
T ss_conf ---------999999996499757999635576----------7897---369999999657644688738999842700
Q ss_pred CCCCHH--------HCCC-----------CCCCCEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 008833--------3165-----------64231410001347889999999854887
Q gi|254780545|r 297 DVLDAA--------LLRP-----------GRFDRQITVPNPDIVGREHILMVHSRNVP 335 (647)
Q Consensus 297 ~~lD~a--------l~Rp-----------gRfd~~i~~~~P~~~~r~~i~~~~~~~~~ 335 (647)
..+-.- -+.| -||--.|-+..||.+.=.+|.+.|++...
T Consensus 153 HLi~e~~~d~~~~~ei~~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~~ 210 (248)
T pfam05673 153 HLIPEYMSDNEGDGEIHPGDAVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRGYAARLG 210 (248)
T ss_pred HCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 0363332347774436725577745348986771785079999999999999999829
No 130
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.96 E-value=1.9e-09 Score=87.31 Aligned_cols=44 Identities=45% Similarity=0.874 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 9889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
|+||.|++.+|..++ |-. -| ...+||+|||||||||+|+++++=
T Consensus 2 f~di~GQ~~akrAl~-iAa----------aG---~H~lLl~GpPG~GKTmlA~rl~~i 45 (207)
T pfam01078 2 LADVKGQEQAKRALE-IAA----------AG---GHNLLMIGPPGSGKTMLAKRLPGI 45 (207)
T ss_pred HHHHCCCHHHHHHHH-HHH----------CC---CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 768638599999999-985----------47---875897889980299999763014
No 131
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.95 E-value=2.4e-08 Score=79.33 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHH--
Q ss_conf 422569889852889999999998743356766420123331100378742588899997424---699702058578--
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSD-- 216 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~-- 216 (647)
....+|+++.|.+..-..+.+.. +--++.+--||+.|.+||||++||+||-.+ ++-||+.+.+..
T Consensus 319 ~~~~~f~~l~g~s~~~~~~~~~a----------~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~ 388 (639)
T PRK11388 319 KVSHTFDHMPQDSPQMRRLIHFG----------RQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLP 388 (639)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHH----------HHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 78888554467999999999999----------99968899689889898109999999995577789981898789898
Q ss_pred ---HHHHHHH--CCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-
Q ss_conf ---8644420--33245--99999999873780120632356414455789886268898899899853-----03235-
Q gi|254780545|r 217 ---FVELFVG--VGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES- 283 (647)
Q Consensus 217 ---~~~~~~g--~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~- 283 (647)
+.+-+.| .|+.+ ....|++| ..-.+|+|||+.+-. +-..-|-.+|.+- +|-..
T Consensus 389 ~~~~e~elfG~~~~~~~~g~~g~~e~A---~gGTL~LdeI~~lp~-----------~~Q~~LlrvL~~~~~~r~g~~~~~ 454 (639)
T PRK11388 389 DEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSV-----------ELQSALLQVLKTGVITRLDSRRLI 454 (639)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHCC---CCCEEEECCHHHCCH-----------HHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 467899873877676434668624403---698288467264999-----------999999999865937856999466
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC--------CCCCCCCCHHH
Q ss_conf 7782999962981008833316564231-------4100013478899-99---9998548--------87773211024
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN--------VPLAPNVILKT 344 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~--------~~~~~~~d~~~ 344 (647)
.-.|-+|+|||++- +.+...|+|.+ .+.|.+|-..+|. +| ++.++.. ..++++ -+..
T Consensus 455 ~vdvRiiaat~~~l---~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~-a~~~ 530 (639)
T PRK11388 455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALAR 530 (639)
T ss_pred EEEEEEEEECCHHH---HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHH
T ss_conf 64279997364508---9998749854999987674410573323253439999999999999971999998999-9999
Q ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 5441203798--99999999987645532024210456899975
Q gi|254780545|r 345 IARGTPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386 (647)
Q Consensus 345 la~~t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~ 386 (647)
|.. .-|-| .+|+|++..|++. .....|+.+||...+.
T Consensus 531 L~~--y~WPGNvrEL~nvl~~a~~~---~~~~~I~~~~Lp~~~~ 569 (639)
T PRK11388 531 LVS--YRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHLF 569 (639)
T ss_pred HHC--CCCCCHHHHHHHHHHHHHHH---CCCCCCCHHHCCHHHH
T ss_conf 972--89997999999999999983---8998426797808775
No 132
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=4.9e-09 Score=84.39 Aligned_cols=201 Identities=25% Similarity=0.418 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------E------ECC
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997-------0------205
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------F------FTI 212 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f------~~~ 212 (647)
+|+||.|++++...|...++ ..|++...||.|+-|+|||-+||-+|...+|. . ..|
T Consensus 14 ~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i 82 (663)
T PRK08770 14 RFAELVGQEHVVRALSNALD-----------SGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDI 82 (663)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 46452285999999999997-----------0997404762279988888999999998678999999978778778988
Q ss_pred CHHHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 857886444203324-----59999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r 213 SGSDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 213 ~~s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
....|+..+-=.+|+ .+|+|.+.+ ..+| -|..|||..-+- ....|.||.-+. +
T Consensus 83 ~~~~~~d~~e~daas~~~v~~~r~~~~~~-~~~p~~~~~kvy~idevhmls--------------~~~fna~lktle--e 145 (663)
T PRK08770 83 DAGRYIDLLEIDAASNTGVDDVREVIENA-QYMPSRGKFKVYLIDEVHMLS--------------KAAFNALLKTLE--E 145 (663)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHHC--C
T ss_conf 54898865886467658889999999844-358877743699970043328--------------999999987402--7
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 5778299996298100883331-65642314100013478899-999998548877732110245441203798999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
....|.+|-||..|+.|..-+| |--||+.+- ++..+...+. .|+. -.++..++ --+..||+...| |=.|--+|
T Consensus 146 pp~~v~f~~att~~~k~p~t~~src~~f~~~~-~~~~~~~~~l~~~~~--~e~~~~~~-~~~~~~~~~~~g-s~rd~lsl 220 (663)
T PRK08770 146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKR-LDEDQIQGQMTRILA--AEQIESDP-SAIVQLSKAADG-SLRDGLSL 220 (663)
T ss_pred CCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHH--HCCCCCCH-HHHHHHHHHCCC-CHHHHHHH
T ss_conf 86442899854873337489998887634377-999999999999999--83997699-999999997478-56778889
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99987645532024210456899
Q gi|254780545|r 361 VNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 361 ~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
...|-- .+...|+.+++..
T Consensus 221 ~~q~~~----~~~~~~~~~~v~~ 239 (663)
T PRK08770 221 LDQAIA----YAGGALREDVVRT 239 (663)
T ss_pred HHHHHH----HCCCCCCHHHHHH
T ss_conf 999998----6689768999999
No 133
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.2e-08 Score=81.66 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=100.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---------------
Q ss_conf 56988985-28899999999987433567664201233311003787425888999974246997---------------
Q gi|254780545|r 145 VTFKDVAG-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP--------------- 208 (647)
Q Consensus 145 v~f~dv~g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~--------------- 208 (647)
.+|+++.| ++.+++.|+..+. ..++|...||+||+|+||+.+|+++|...-+.
T Consensus 2 ~~~~~~~~~Q~~i~~~L~~~i~-----------~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~ 70 (329)
T PRK08058 2 MTWEQLTALQPIVVKMLQNSIA-----------KNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 9778888318999999999998-----------59966156557899988999999999997399999999887888999
Q ss_pred -EECCCHHHHHHHHH-H--CCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -02058578864442-0--332459999999987378-----01206323564144557898862688988998998530
Q gi|254780545|r 209 -FFTISGSDFVELFV-G--VGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 209 -f~~~~~s~~~~~~~-g--~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
|-.-+.+||....- | .+-..||+|-+... .+| =|+.||+.|.+- .+.-|.||--+.
T Consensus 71 ~~~~~~HPD~~~i~p~~~~i~idqiR~L~~~~~-~~p~~g~~KV~II~~Ae~m~--------------~~AaNALLKtLE 135 (329)
T PRK08058 71 RIESGNHPDVHLVAPDGQSIKKDQIRYLKEEFS-KSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLE 135 (329)
T ss_pred HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHC-CCCCCCCCEEEEEECHHHHC--------------HHHHHHHHHHHH
T ss_conf 987699997677456614077999999999964-38757886799973477629--------------999999999864
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 3235778299996298100883331-656423141000134788999999
Q gi|254780545|r 280 GFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 280 g~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
++..++++|=.|+.++.|=|-++ |-- ++.+..|+.+.-.+.|.
T Consensus 136 --EPp~~t~fIL~t~~~~~lLpTI~SRCq----~i~f~~~~~~~i~~~L~ 179 (329)
T PRK08058 136 --EPSGDTTAILLTENKHQILPTILSRCQ----VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred --CCCCCCEEEEEECCHHHHHHHHHHCCE----EEECCCCCHHHHHHHHH
T ss_conf --689786799872996664368863142----56588999999999999
No 134
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.91 E-value=1.1e-08 Score=81.93 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EE------C
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997-------02------0
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FF------T 211 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~------~ 211 (647)
-+|+||.|++++...|...++ ..|+....||+|+-|+|||-+||-+|.-.+|. .= .
T Consensus 13 ~~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~ 81 (705)
T PRK05648 13 RSFREMVGQTHVLKALINALD-----------NQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCRE 81 (705)
T ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 757663281999999999997-----------098630465007898889899999999867789998897877600466
Q ss_pred CCHHHHHHHHHHCCHHH-----HHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 58578864442033245-----9999999987378-----0120632356414455789886268898899899853032
Q gi|254780545|r 212 ISGSDFVELFVGVGASR-----VRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 212 ~~~s~~~~~~~g~g~~~-----vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
+....|+..+-=.+|+| +|+|.+.+ ..+| -|..|||..-+- ....|.||.-+.
T Consensus 82 i~~~~~~d~~e~d~as~~~v~~~r~~~~~~-~~~p~~~~~kv~~idevhmls--------------~~~fnallktle-- 144 (705)
T PRK05648 82 IDEGRFVDLIEVDAASRTKVEDTRELLDNV-QYAPTRGRYKVYLIDEVHMLS--------------SHSFNALLKTLE-- 144 (705)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEEHHHHCC--------------HHHHHHHHHHCC--
T ss_conf 624897763445155447889999999855-517767745799984265417--------------999999987404--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 35778299996298100883331-656423141000134788999999985--488777321102454412037989999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLR 358 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~ 358 (647)
+....|.+|-||..|+.|..-+| |--||+.+- ++.....++ |+.-+ .++..++ --+..||+...| |=.|--
T Consensus 145 epp~~v~f~~att~~~k~p~t~~src~~~~~~~-~~~~~~~~~---l~~~~~~e~~~~~~-~~~~~~~~~~~g-~~rd~l 218 (705)
T PRK05648 145 EPPPHVKFLLATTDPQKLPVTILSRCLQFSLKN-MSPERVVEH---LSHVLGAENVPFEE-DALWLLGRAADG-SMRDAM 218 (705)
T ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHCCCCC-CCHHHHHHH---HHHHHHHCCCCCCH-HHHHHHHHHCCC-CHHHHH
T ss_conf 797545999842873537589997664302368-999999999---99999975997789-999999997489-677799
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999987645532024210456899
Q gi|254780545|r 359 NLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 359 ~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
.|...|-- .+...|+.+++..
T Consensus 219 s~~dq~~~----~~~~~~~~~~v~~ 239 (705)
T PRK05648 219 SLTDQAIA----FGEGKVLAADVRA 239 (705)
T ss_pred HHHHHHHH----CCCCCCCHHHHHH
T ss_conf 99999986----0688407999999
No 135
>KOG1969 consensus
Probab=98.91 E-value=1.1e-07 Score=74.66 Aligned_cols=199 Identities=27% Similarity=0.393 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH----HH------------------HCCCC-CCEEECCCCCHHHHHHHH
Q ss_conf 569889852889999999998743--356766----42------------------01233-311003787425888999
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLC--DPQKFK----RL------------------GGRIP-HGVLLVGPPGTGKTLLAR 199 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~--~~~~~~----~~------------------g~~~p-~g~ll~GppGtGKTlla~ 199 (647)
-.|.|.-|-+.+- +.+..||| +|--|. ++ -.+|| |=+||+||||-|||.||.
T Consensus 268 k~FtdLLsDe~tN---R~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969 268 KKFTDLLSDEKTN---RRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred HHHHHHHCCHHHH---HHHHHHHHHHCHHHHCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 6788874520687---9999999861578640147554335466434556324686679840068753688787247999
Q ss_pred HHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH--------HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 974246997020585788644420332459999999987--------378012063235641445578988626889889
Q gi|254780545|r 200 AVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKN--------NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTL 271 (647)
Q Consensus 200 a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~--------~~p~iifiDeida~~~~r~~~~~~~~~e~~~~l 271 (647)
.+|..||-..+.+.+||=. ++.-|++--..|-+ ..|.-+.|||||. .-| ..+
T Consensus 345 ViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG--a~~------------~~V 404 (877)
T KOG1969 345 VIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG--APR------------AAV 404 (877)
T ss_pred HHHHHCCCEEEEECCCCCC------CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC--CCH------------HHH
T ss_conf 9998628548873255543------47889999999886411225688863599842468--728------------999
Q ss_pred HHHHHHHC-------CCCC--------------CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 98998530-------3235--------------77829999629810088333165642314100013478899999998
Q gi|254780545|r 272 NQLLVEMD-------GFES--------------SEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 272 n~ll~~md-------g~~~--------------~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
+.+|.-+- |=.. ...||.|| | |..-|||.-=--|-..|++..|...--.+=|+.-
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC--N--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I 480 (877)
T KOG1969 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC--N--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEI 480 (877)
T ss_pred HHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEE--C--CCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 99999997416142168663203455530465458778986--4--7555333310210489995699766899999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5488777321102454412037989999999998764553202
Q gi|254780545|r 331 SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
+.+-.+. +|...|+..|+ ++-.||.+.+|.--.++.+..+
T Consensus 481 C~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969 481 CHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHCCC--CCHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCCC
T ss_conf 7641577--88789999999-8613098888899999970444
No 136
>PRK08727 hypothetical protein; Validated
Probab=98.90 E-value=1.6e-07 Score=73.46 Aligned_cols=201 Identities=24% Similarity=0.274 Sum_probs=120.2
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHH
Q ss_conf 422569889-8528899999999987433567664201233311003787425888999974246---997020585788
Q gi|254780545|r 142 VGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDF 217 (647)
Q Consensus 142 ~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~ 217 (647)
.+..||++. +|-......++.. .. | ..+.-+.||||+|+|||.|+.|++.++ +....+++..++
T Consensus 13 ~~~~tfdnFi~~~n~~~a~l~~~---~~--------~-~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHH---HC--------C-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 97224212067855999999987---43--------8-888989998999998899999999999827997288447885
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 644420332459999999987378012063235641445578988626889----8899899853032357782999962
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
.. ...+.++.. +. -..|.||.||.++.++ +.| ...|.+. .+.+-++++++
T Consensus 81 ~~--------~~~~~l~~l-e~-~~ll~iDDid~i~g~~---------~~e~aLFhL~N~~~-------~~~~~ll~ts~ 134 (233)
T PRK08727 81 AG--------RLRDALEAL-EG-RSLVALDGVDSIAGQR---------EDEVALFDFHNRAR-------AAGITLLYTAR 134 (233)
T ss_pred HH--------HHHHHHHHH-CC-CCEEEEECCHHCCCCH---------HHHHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf 32--------025677531-03-8978985501126982---------79999999999998-------61983899779
Q ss_pred CCCCCCCH---HHCCCCCC--CCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98100883---33165642--3141000134788999999985--48877732110245441203798999999999876
Q gi|254780545|r 294 NRPDVLDA---ALLRPGRF--DRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 294 n~~~~lD~---al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
.-|..++- -|.= || --.+.+..||.+.+..|++.+. ++..++++| ++.|.++.+ .+-..+.++++.=-.
T Consensus 135 ~~P~~l~~~l~DL~S--RL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V-~~Yll~r~~-R~~~~l~~~l~~LD~ 210 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAA-IDWLLTHGE-RELAGLVALLDRLDR 210 (233)
T ss_pred CCHHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 895662310021999--9966922885788979999999999998699999899-999998568-899999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHH
Q ss_conf 4553202421045689997
Q gi|254780545|r 367 MAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 367 ~a~r~~~~~i~~~dl~~A~ 385 (647)
.+. ..++.||..=+.+.+
T Consensus 211 ~SL-~~kr~iTip~vk~vL 228 (233)
T PRK08727 211 ESL-AAKRRITVPFLRRVL 228 (233)
T ss_pred HHH-HCCCCCCHHHHHHHH
T ss_conf 999-808988899999999
No 137
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.90 E-value=8e-08 Score=75.62 Aligned_cols=49 Identities=43% Similarity=0.737 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 422569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
....-|.||.|++.+|..++ |- .-| -..+||+|||||||||||+++.+=
T Consensus 185 ~~~~D~~dv~Gq~~akrale-IA----------AAG---gHnlLl~GpPG~GKTMlA~rlp~I 233 (506)
T PRK09862 185 ALQHDLSDVVGQEQGKRGLE-IT----------AAG---GHNLLLIGPPGTGKTMLASRINGL 233 (506)
T ss_pred CCCCCHHHHCCCHHHHHHHH-HH----------HCC---CCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 66567565369799999999-97----------446---886598769994598999775123
No 138
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.2e-08 Score=81.45 Aligned_cols=187 Identities=27% Similarity=0.407 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----CCCHHHHHHH
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702-----0585788644
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----TISGSDFVEL 220 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----~~~~s~~~~~ 220 (647)
+|+||.|++++...|.-.++ ..|+....||.||-|+|||.+||-+|...+|.-= .-.++...+.
T Consensus 14 ~f~~~vgq~~v~~~l~~a~~-----------~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i 82 (696)
T PRK06872 14 TFSEVVGQEHILTALSNGLK-----------ENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAI 82 (696)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 56452385999999999997-----------1986304751178988888999999998678999999978886225767
Q ss_pred HHH--------CCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 420--------3324-----599999999873780-----1206323564144557898862688988998998530323
Q gi|254780545|r 221 FVG--------VGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 221 ~~g--------~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
.-| .+|+ .+|+|.+.+ ..+|+ |..|||..-+- ....|.||.-+. +
T Consensus 83 ~~g~~~d~~eidaas~~~v~~~r~l~~~~-~~~p~~~~~kvy~idevhmls--------------~~~fnallktle--e 145 (696)
T PRK06872 83 EEGNFIDLIEIDAASRTKVEDTRELLDNV-QYKPVVGRFKVYLIDEVHMLS--------------RHSFNALLKTLE--E 145 (696)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEEHHHHCC--------------HHHHHHHHHHHC--C
T ss_conf 44787754675056557889999999845-457767754799970054438--------------999999987502--7
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 5778299996298100883331-6564231410001347889-9999998548877732110245441203798999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGR-EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r-~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
..+.|++|-||..|+.|..-+| |--+|+.+- ++......+ ..|+. -.++..++. -+..||+...| |=.|--.|
T Consensus 146 pp~~v~f~latt~~~k~p~tilsrc~~f~~~~-~~~~~i~~~l~~i~~--~e~~~~~~~-al~~~a~~a~g-s~rdalsl 220 (696)
T PRK06872 146 PPEYVKFLLATTDPQKLPITILSRCMQFHLKA-LDQTQIAQHLEFILT--QENIPFESP-ALEKLAKAAQG-SIRDSLSL 220 (696)
T ss_pred CCCCEEEEEECCCHHHCCHHHHHHHHHEECCC-CCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
T ss_conf 97544899843863227488987665300268-999999999999999--849977999-99999997589-56778889
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780545|r 361 VNEAA 365 (647)
Q Consensus 361 ~~eAa 365 (647)
...|-
T Consensus 221 ~dqai 225 (696)
T PRK06872 221 TDQAI 225 (696)
T ss_pred HHHHH
T ss_conf 99999
No 139
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.88 E-value=7.3e-08 Score=75.90 Aligned_cols=217 Identities=21% Similarity=0.322 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---------CCCCEECCCH---HHH
Q ss_conf 9852889999999998743356766420123331100378742588899997424---------6997020585---788
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---------ANVPFFTISG---SDF 217 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---------~~~~f~~~~~---s~~ 217 (647)
-.|+..+++-|....+.|..|.+- |+ .++||+|++|.|||++++-.+.. ..+|.+++.. ++-
T Consensus 36 WIgY~~A~~~L~~Le~Ll~~P~~~-----Rm-p~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~ 109 (302)
T pfam05621 36 WIGYPRAVEALNRLEALYAWPNKQ-----RM-PNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSV 109 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCC-----CC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCH
T ss_conf 327789999999999998468646-----88-755887079887899999999967998786667021899976999886
Q ss_pred HHHHHH----CCH-----HHHHHH----HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 644420----332-----459999----9999873780120632356414455789886268898899899853032357
Q gi|254780545|r 218 VELFVG----VGA-----SRVRDM----FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS 284 (647)
Q Consensus 218 ~~~~~g----~g~-----~~vr~l----f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~ 284 (647)
...|.. .|+ .++-.+ ...-++..+-++.|||+..+- .|+..++.+++|.|=--.+ +-.
T Consensus 110 ~~lY~~IL~~l~aP~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL-------~Gs~~~qr~~ln~LK~L~N--el~ 180 (302)
T pfam05621 110 IRFYVALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVL-------AGNSVNRREFLNLLRFLGN--ELR 180 (302)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHC-------CCCHHHHHHHHHHHHHHHH--CCC
T ss_conf 8999999998378778887789999999999997498789985436560-------4868899999999999863--658
Q ss_pred CCEEEEEECCC--CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCC--CCCHHH----HHHHHHCCCHHH
Q ss_conf 78299996298--1008833316564231410001347889999999854887773--211024----544120379899
Q gi|254780545|r 285 EGVILIAATNR--PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAP--NVILKT----IARGTPGFSGAD 356 (647)
Q Consensus 285 ~~v~vi~aTn~--~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~--~~d~~~----la~~t~g~sgAd 356 (647)
-.+|.+|.--- .=.-||-|-. ||+-..--.----++=...|.-.-+..|+.. ++.-.. +-..|.|..| +
T Consensus 181 IpiV~vGt~eA~~ai~tD~Qlas--RF~~~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~iG-e 257 (302)
T pfam05621 181 IPLVGVGTRDAYLAIRSDDQLEN--RFEPMLLPPWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIG-E 257 (302)
T ss_pred CCEEEECCHHHHHHHHCCHHHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHH-H
T ss_conf 78699531999999706888885--05861168888980899999999986888777688889999999998599287-9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999999876455320242104568999
Q gi|254780545|r 357 LRNLVNEAALMAARRNRRLVTMQEFEDA 384 (647)
Q Consensus 357 i~~~~~eAa~~a~r~~~~~i~~~dl~~A 384 (647)
|.+++++||..|++.|++.||.+.|.++
T Consensus 258 i~~Ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T pfam05621 258 LAHLLMAAAIAAVESGEEAINHRTLSMA 285 (302)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHC
T ss_conf 9999999999998478710089999667
No 140
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=2.1e-08 Score=79.88 Aligned_cols=146 Identities=27% Similarity=0.403 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------------------
Q ss_conf 8985288999999999874335676642012333110037874258889999742469----------------------
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---------------------- 206 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---------------------- 206 (647)
++.|.+++...+...+. . . .+.|..+||+||||||||.+|.++|.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~---~------~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQAL---E------S-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CCCCCHHHHHHHHHHHH---H------C-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 64332358999999998---6------5-888761003799999789999999999658664334552002244432025
Q ss_pred --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf --970205857886444203324599999999873----78012063235641445578988626889889989985303
Q gi|254780545|r 207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG 280 (647)
Q Consensus 207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg 280 (647)
-.|+.+..|+-... .+....||++=+..-.. ..-||+|||+|.+-. +..|.||--|.
T Consensus 72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE- 134 (325)
T COG0470 72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE- 134 (325)
T ss_pred CCCCEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCC-
T ss_conf 6886599773213333--006999999998604465667726999732032698--------------88876754332-
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 235778299996298100883331656423141000134788999
Q gi|254780545|r 281 FESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREH 325 (647)
Q Consensus 281 ~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~ 325 (647)
.......+|-.||+|..+=|-|.- | =..+.+..|+...+..
T Consensus 135 -ep~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~ 175 (325)
T COG0470 135 -EPPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIA 175 (325)
T ss_pred -CCCCCEEEEEEECCHHHCHHHHHH--H-EEEEECCCCCHHHHHH
T ss_conf -488871699974985556478775--6-0788767741889999
No 141
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.5e-09 Score=83.05 Aligned_cols=194 Identities=20% Similarity=0.230 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHH--
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699-----7020585788--
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDF-- 217 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~-- 217 (647)
-+|.||.|++++++.|...+. ..++|...||+||+|+|||.+|.++|...-+ .+.....+.-
T Consensus 14 ~~~~~liGqe~~~~~L~~a~~-----------~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~ 82 (363)
T PRK07471 14 RETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLA 82 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf 982731681999999999998-----------599764587679998188999999999985799977777678705312
Q ss_pred ------HHHHHHCCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCC-CCCC---------CHHHHHHHHHHHHH
Q ss_conf ------6444203324----59999999987378012063235641445578-9886---------26889889989985
Q gi|254780545|r 218 ------VELFVGVGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG-LGGG---------NDEREQTLNQLLVE 277 (647)
Q Consensus 218 ------~~~~~g~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~-~~~~---------~~e~~~~ln~ll~~ 277 (647)
+-..+..|.. -++.-++.-.......|.|||+..+...=+.. ..|+ ++-..+.-|.||--
T Consensus 83 ~~~~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~ 162 (363)
T PRK07471 83 VDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKV 162 (363)
T ss_pred CCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHH
T ss_conf 58777289999526999846676200113332124453999999999972485248966999868787388999999997
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH
Q ss_conf 303235778299996298100883331-6564231410001347889999999854887773211024544120379899
Q gi|254780545|r 278 MDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGAD 356 (647)
Q Consensus 278 mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAd 356 (647)
+. +...++++|-.|+.|+.|=|-++ |--+| .+.+.+.++-...|.-.. .+-.++-.+..+|....|=-|.-
T Consensus 163 LE--EPP~~t~fiLit~~~~~llpTI~SRCq~~----~~~~l~~~~~~~~L~~~~--~~~~~~~~~~~la~~a~Gs~~~A 234 (363)
T PRK07471 163 LE--EPPARSLLLLVSHAPARLLPTIRSRCRKL----RLRPLAPEDVIAALAEAG--GPALDDAELAALAALAEGSVGRA 234 (363)
T ss_pred HC--CCCCCEEEEEEECCHHHCHHHHHHHCCCC----CCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 21--58988389986399777779999735242----589959999999999843--89999899999999758999999
Q ss_pred H
Q ss_conf 9
Q gi|254780545|r 357 L 357 (647)
Q Consensus 357 i 357 (647)
|
T Consensus 235 l 235 (363)
T PRK07471 235 L 235 (363)
T ss_pred H
T ss_conf 9
No 142
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.88 E-value=2.9e-09 Score=85.98 Aligned_cols=81 Identities=36% Similarity=0.575 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf 88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g 225 (647)
+-..|+.+|++..--+|+.+|.- |+ --|++||.||||||||-||-|+|.|.| +||.+++||++.+.-+--+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~-K~------aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKT 96 (395)
T pfam06068 24 EGLVGQEKAREAAGVIVEMIKEG-KI------AGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKT 96 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC-CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHH
T ss_conf 77545499999989999999727-75------773899877999888999999999748799734500111212565488
Q ss_pred HHHHHHHHHHH
Q ss_conf 24599999999
Q gi|254780545|r 226 ASRVRDMFEQA 236 (647)
Q Consensus 226 ~~~vr~lf~~a 236 (647)
+. +.+.|++|
T Consensus 97 E~-L~qafRrs 106 (395)
T pfam06068 97 EA-LTQAFRKA 106 (395)
T ss_pred HH-HHHHHHHH
T ss_conf 99-99999887
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=2.7e-07 Score=71.78 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=105.7
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf 311003787425888999974246---99702058578864442033245999999998737801206323564144557
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~ 258 (647)
..+.+|||+|||||.|.+|+++++ +.+-+++..++... | . .++++..+.. .++-||.+|.+..++
T Consensus 40 ~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~-~---~----~~~l~~l~~~--d~l~iDDi~~i~g~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-F---S----PAVLENLEQQ--DLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH-C---C----HHHHHHHHHC--CEEEEECHHHHCCCH--
T ss_conf 87999899999889999999999997189859997377564-0---6----9999876547--979996723424883--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC-
Q ss_conf 898862688988998998530323577829999629810088---3331656423--1410001347889999999854-
Q gi|254780545|r 259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR- 332 (647)
Q Consensus 259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~- 332 (647)
+.+..+-.|.-++- +....++++++..-|..++ |-|.= ||- -.+.+..||.+.|.+|++.+.+
T Consensus 108 -------~~e~~lF~l~N~l~--~~~~~~ll~ss~~~p~~l~~~l~DL~S--Rl~~~~~~~i~~~dd~~~~~iL~~~a~~ 176 (229)
T PRK06893 108 -------EWELAIFDLFNRIK--ESGKTLLLISANQSPHALQIKLPDLAS--RLTWGEIYQLNDLTDEQKIEVLQRNAYQ 176 (229)
T ss_pred -------HHHHHHHHHHHHHH--HCCCCEEEEECCCCHHHHCCHHHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -------89999999999999--759917998579883322100267999--9968836996677757999999999996
Q ss_pred -CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -88777321102454412037989999999998764553202421045689997
Q gi|254780545|r 333 -NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 333 -~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
+..++++| ++.++++.+ -+-..|..+++.=-..+ ...++.||..-+.+.+
T Consensus 177 rgl~l~~~v-~~yl~~r~~-R~~~~l~~~l~~Ld~~s-l~~kr~iTiplvkevL 227 (229)
T PRK06893 177 RGIELSDET-ANFLLKRLD-RDMHTLFDALDLLDKAS-LQAQRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHH
T ss_conf 499999899-999999834-78999999999999999-9808999999999986
No 144
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.82 E-value=3.1e-07 Score=71.38 Aligned_cols=211 Identities=23% Similarity=0.321 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----
Q ss_conf 69889852889999999998743356766420123331100378742588899997424---6997020585788-----
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF----- 217 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~----- 217 (647)
.|.++.|...+-+++.+.+. +. +..+.-||+.|++||||.++|++|-.. ++-||+.++++.+
T Consensus 141 ~~~~lig~S~~m~~v~~~i~------~~----A~s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTA------KI----ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred CCCCCEECCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
T ss_conf 56774546999999999999------98----488995899889985789999999983798899838764787985778
Q ss_pred HHHHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCC----C
Q ss_conf 644420------33245-999999998737801206323564144557898862688988998998530--3235----7
Q gi|254780545|r 218 VELFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFES----S 284 (647)
Q Consensus 218 ~~~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~----~ 284 (647)
-+...| .|+.. -.-+|++|. .--+|+|||+.+-.. -..-|-.+|.+-. -..+ .
T Consensus 211 eseLFG~~kgaftga~~~~~G~~e~A~---gGTLfLdeI~~l~~~-----------~Q~kLLr~L~~~~~~~~g~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMPLV-----------LQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHCC---CCCEECCCHHHHHHH-----------HHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 999718766787885314698613359---982631466452399-----------999999998649278569971366
Q ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH-H---HHHHHCCC----CC-CCCCCHHHHHHH
Q ss_conf 782999962981008833316564231-------41000134788999-9---99985488----77-732110245441
Q gi|254780545|r 285 EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH-I---LMVHSRNV----PL-APNVILKTIARG 348 (647)
Q Consensus 285 ~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~-i---~~~~~~~~----~~-~~~~d~~~la~~ 348 (647)
..|=+|+|||+.= ..+.+.|+|.. .+.+.+|-..+|.+ | +++++... .. ...++-+.+...
T Consensus 277 ~dvRiIaaT~~~L---~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred ECCEEEECCCCCH---HHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 5348996578785---9998758323889953022125173854587549999999999999974999898899999999
Q ss_pred H-HCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2-03798--99999999987645532024210456899975
Q gi|254780545|r 349 T-PGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386 (647)
Q Consensus 349 t-~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~ 386 (647)
. ..|-| .+|+|++..|.+.+ ....|+.+|+...+.
T Consensus 354 ~~y~WPGNvREL~n~ierav~~~---~~~~i~~~~l~~~~~ 391 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQIR 391 (457)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHC---CCCCCCHHHCCHHHH
T ss_conf 56999979999999999999828---998156676848661
No 145
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80 E-value=2.9e-07 Score=71.52 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=124.4
Q ss_pred HCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC-----CHHHHHHHHH---HCC---HH---HHHH----HHH
Q ss_conf 0123331-10037874258889999742469---970205-----8578864442---033---24---5999----999
Q gi|254780545|r 177 GGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI-----SGSDFVELFV---GVG---AS---RVRD----MFE 234 (647)
Q Consensus 177 g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~-----~~s~~~~~~~---g~g---~~---~vr~----lf~ 234 (647)
++.-.+| +++.|+||||||.+.++++.... +.++.+ +..+|..... |.. .. ..+. |.+
T Consensus 38 ~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~ 117 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99648965999729989889999999984593454899976999999999999999859898898999999999999999
Q ss_pred HHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHCCCCCCC--CEEEEEECCCCCCCCHHHCCC--CC
Q ss_conf 9987378012063235641445578988626889889989--98530323577--829999629810088333165--64
Q gi|254780545|r 235 QAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL--LVEMDGFESSE--GVILIAATNRPDVLDAALLRP--GR 308 (647)
Q Consensus 235 ~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l--l~~mdg~~~~~--~v~vi~aTn~~~~lD~al~Rp--gR 308 (647)
.......+++.|||.+-+. ..+|++| |..+. .++.+ .+|++|-....+.|...-+|+ -|
T Consensus 118 ~~~~g~~~vliIDEAq~L~--------------~~~Le~Lr~L~n~e-~~~~~ll~iiL~GqpeL~~~L~~~~~~~l~qR 182 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLT--------------PELLEELRMLSNFQ-TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQR 182 (269)
T ss_pred HHHCCCCEEEEEECHHHCC--------------HHHHHHHHHHHCCC-CCCCCCEEEEEECCHHHHHHHCCCCHHHHHHC
T ss_conf 9966994699972422199--------------99999999997013-58887048999578679998727402545550
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHCCCCCCCC--C---CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 2314100013478899999998548877732--1---1024544120379899999999987645532024210456899
Q gi|254780545|r 309 FDRQITVPNPDIVGREHILMVHSRNVPLAPN--V---ILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 309 fd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~--~---d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
.-.+++++.-+.++-.+-+++.++.--...+ + -+..|.+.|. -.+.-|..+|..|-+.|..++++.|+.+++.+
T Consensus 183 I~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~-G~PR~IN~Lc~~aLl~a~~~~~~~I~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSR-GIPRLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 76799847999899999999999866999999859999999999869-90089999999999999994888679999999
Q ss_pred HHHHC
Q ss_conf 97501
Q gi|254780545|r 384 AKDKI 388 (647)
Q Consensus 384 A~~rv 388 (647)
|+..+
T Consensus 262 ~~~el 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHH
T ss_conf 99976
No 146
>KOG1051 consensus
Probab=98.77 E-value=5.6e-08 Score=76.73 Aligned_cols=159 Identities=25% Similarity=0.351 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCC-------EECCCHHH-
Q ss_conf 8898528899999999987433567664201233311003787425888999974246---997-------02058578-
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVP-------FFTISGSD- 216 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~-------f~~~~~s~- 216 (647)
+-|.|- .-++++.+++.|-. +..+.-+|.|.||.|||-++.-+|... +|| +++++-..
T Consensus 186 dPvigr--~deeirRvi~iL~R---------r~k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051 186 DPVIGR--HDEEIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred CCCCCC--CHHHHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHC
T ss_conf 886588--52889999999814---------6789966983687772168999998766178885334552489870000
Q ss_pred -HHHHHHHCCHHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf -8644420332459999999987-37801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 217 -FVELFVGVGASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 217 -~~~~~~g~g~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
.-.+|-|..+.|++++-..+.. ....|+||||+.-+-...+. .|+.| ..| +|..|= .+.++-+||||-
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d----~~n-lLkp~L---~rg~l~~IGatT 324 (898)
T KOG1051 255 VAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAID----AAN-LLKPLL---ARGGLWCIGATT 324 (898)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCC--CHHHH----HHH-HHHHHH---HCCCEEEEECCC
T ss_conf 35864212788999999999854798689983214322048874--11899----998-658888---559748972250
Q ss_pred C-----CCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 8-----10088333165642314100013478899999998
Q gi|254780545|r 295 R-----PDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 295 ~-----~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
. --.-||||=| ||+- +.|+-|....-..||...
T Consensus 325 ~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051 325 LETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGL 362 (898)
T ss_pred HHHHHHHHHHCCCHHH--CCCE-EEECCCCCCCHHHHHHHH
T ss_conf 9999998763820541--8551-671357655314565554
No 147
>pfam00493 MCM MCM2/3/5 family.
Probab=98.77 E-value=4.9e-08 Score=77.17 Aligned_cols=158 Identities=28% Similarity=0.338 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHC
Q ss_conf 8985288999999-9998743356766420123--33110037874258889999742469-970205857886444203
Q gi|254780545|r 149 DVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGV 224 (647)
Q Consensus 149 dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~ 224 (647)
.|-|++.+|.-+. ..+ ....+...-|.+. --.|||.|-||||||.|.|.++.=+- .-|.+-.||. -+|.
T Consensus 25 ~i~G~~~vK~ai~l~l~---gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss----~~GL 97 (327)
T pfam00493 25 SIYGHEDVKKAILLQLF---GGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS----AAGL 97 (327)
T ss_pred CCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----CCCC
T ss_conf 12498799999999980---8987658888620365118984699815609999999868870883177665----6776
Q ss_pred CHHHHHHHHH-----HHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CC
Q ss_conf 3245999999-----99873---7801206323564144557898862688988998998530---------3235--77
Q gi|254780545|r 225 GASRVRDMFE-----QAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SE 285 (647)
Q Consensus 225 g~~~vr~lf~-----~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~ 285 (647)
+++-+|+-+. +|-.. ---|++|||+|-.. +++.+.|+.-|. |... +.
T Consensus 98 Ta~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~--------------~~d~saL~EAMEqqtVsIaKaGi~~tL~a 163 (327)
T pfam00493 98 TAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMN--------------EEDRVAIHEAMEQQTISIAKAGIVATLNA 163 (327)
T ss_pred EEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCC--------------HHHHHHHHHHHHHCEEEEECCCEEEEECC
T ss_conf 1589980688836983684775589827850055588--------------76799999999868177633853897258
Q ss_pred CEEEEEECCCCC-------------CCCHHHCCCCCCCCE-EEECHHHHHHHHHHHHH
Q ss_conf 829999629810-------------088333165642314-10001347889999999
Q gi|254780545|r 286 GVILIAATNRPD-------------VLDAALLRPGRFDRQ-ITVPNPDIVGREHILMV 329 (647)
Q Consensus 286 ~v~vi~aTn~~~-------------~lD~al~RpgRfd~~-i~~~~P~~~~r~~i~~~ 329 (647)
...||||.|-.. .|.++||- |||-. +..+.||.+.-.+|.++
T Consensus 164 r~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLs--RFDLif~l~D~~~~~~D~~ia~~ 219 (327)
T pfam00493 164 RCSVLAAANPIFGRYDPKKSVAENINLPPPLLS--RFDLIFVLLDKPDEEKDEELAKH 219 (327)
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHC--CEEEEEEEECCCCHHHHHHHHHH
T ss_conf 717998527767737888898885589767745--01079884068986889999999
No 148
>KOG0745 consensus
Probab=98.73 E-value=2.1e-08 Score=79.81 Aligned_cols=120 Identities=29% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-HHHHHCC-HHHHHHHHHHHH----HHCCHHEEHHHHHHHHCC
Q ss_conf 3110037874258889999742469970205857886-4442033-245999999998----737801206323564144
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-ELFVGVG-ASRVRDMFEQAK----NNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~~~~g~g-~~~vr~lf~~a~----~~~p~iifiDeida~~~~ 255 (647)
..|||.||.|+||||||+.+|.=.+|||.-..++.+- --|||+- ++-+..|...|. +..--||||||+|-|+++
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHHHHHCCC
T ss_conf 54799778887643899999997088768732552200553454299999999997257899882673887601244136
Q ss_pred CCCCCCCCCHH-HHHHHHHHHHHHCCCCC-----------CCCEEEEEECCCCCCCCHH
Q ss_conf 55789886268-89889989985303235-----------7782999962981008833
Q gi|254780545|r 256 RGIGLGGGNDE-REQTLNQLLVEMDGFES-----------SEGVILIAATNRPDVLDAA 302 (647)
Q Consensus 256 r~~~~~~~~~e-~~~~ln~ll~~mdg~~~-----------~~~v~vi~aTn~~~~lD~a 302 (647)
-.+- +.+.|. .|-+-..||--+.|--- ....|.|-+||-.-+.--|
T Consensus 307 ~~~i-~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA 364 (564)
T KOG0745 307 AESI-HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA 364 (564)
T ss_pred CCCC-CCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCC
T ss_conf 7654-544456626699999998526277026778777899985897136668880343
No 149
>PRK08116 hypothetical protein; Validated
Probab=98.72 E-value=4.2e-08 Score=77.63 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHH----HCCHHHHHHHHHH
Q ss_conf 9987433567664201233311003787425888999974246---99702058578864442----0332459999999
Q gi|254780545|r 163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFV----GVGASRVRDMFEQ 235 (647)
Q Consensus 163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~----g~g~~~vr~lf~~ 235 (647)
...|.++ |..++ ..++|+||+||||||||.||-|||+++ |.+.+.++.++|+...- ..+.....++++.
T Consensus 94 a~~Y~~~---f~~~~-~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~ 169 (262)
T PRK08116 94 AVKYVKK---FEEMK-KESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRA 169 (262)
T ss_pred HHHHHHH---HHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999998---98736-4686189989899989999999999999879939998899999999999863561019999998
Q ss_pred HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
. .++ -++.||++- ..+.+ +. +..+|..-+|.- -+.+--+|-+||.+
T Consensus 170 l-~~~-dLLIiDDlG---~e~~t------~w---~~e~lf~IIn~R-y~~~kptIiTTNl~ 215 (262)
T PRK08116 170 L-DNA-DLLILDDLG---AEKDT------EW---VREKLYNIIDSR-YRKGLPTIFTTNLS 215 (262)
T ss_pred H-HCC-CEEEEEHHC---CCCCC------HH---HHHHHHHHHHHH-HHCCCCEEEECCCC
T ss_conf 6-129-989983221---45698------78---999999999999-97699989987999
No 150
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71 E-value=2.6e-08 Score=79.16 Aligned_cols=138 Identities=25% Similarity=0.387 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 225698898528-899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 143 GSVTFKDVAGVD-EAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 143 ~~v~f~dv~g~~-~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
-+++|+|+.--+ +-...+..+.+|+.. |.. ..-.||++||||+|||||.||.|+|++. |.+.+.+.-++|+
T Consensus 123 ~~as~~d~~~~d~~R~~a~~~a~~F~~~---y~~--~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~ 197 (306)
T PRK08939 123 LQATLADIDLDDLDRLDALMAALDFLEA---YKP--GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFI 197 (306)
T ss_pred HCCCHHHCCCCCHHHHHHHHHHHHHHHH---HCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 8098986488977899999999999997---376--98887788989999989999999999999869929998759999
Q ss_pred HHHHH-CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHH-HHCCCCCCCCEEEEEECCC
Q ss_conf 44420-3324599999999873780120632356414455789886268-8988998998-5303235778299996298
Q gi|254780545|r 219 ELFVG-VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLV-EMDGFESSEGVILIAATNR 295 (647)
Q Consensus 219 ~~~~g-~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~ 295 (647)
...-+ -+...+.+..+.. +++| +++||+|-| -.. +.+ |+.+|..+|. -|+ +..-++-+||.
T Consensus 198 ~~lK~s~~d~s~~~~i~~~-k~~~-vLiLDDiGa---E~~------t~W~rd~vl~~IL~~Rm~-----~~lPTffTSN~ 261 (306)
T PRK08939 198 RELKNAISDGSVKEKIDAV-KEAP-VLMLDDIGA---EQM------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNF 261 (306)
T ss_pred HHHHHHHCCCCHHHHHHHH-HCCC-EEEEECCCC---CCC------CHHHHHHHHHHHHHHHHH-----CCCCEEEECCC
T ss_conf 9999986489889999998-4499-899844465---426------777899899999999997-----49997997799
Q ss_pred -CCCCCH
Q ss_conf -100883
Q gi|254780545|r 296 -PDVLDA 301 (647)
Q Consensus 296 -~~~lD~ 301 (647)
++.|..
T Consensus 262 ~~~eLe~ 268 (306)
T PRK08939 262 DFDELEH 268 (306)
T ss_pred CHHHHHH
T ss_conf 9999999
No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.68 E-value=5.2e-08 Score=76.94 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH--
Q ss_conf 22569889852889999999998743356766420123331100378742588899997424---6997020585788--
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-- 217 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-- 217 (647)
...+|+|+.|...+-.++.+ .. +++ |..+.-||++|.+||||.++|+|+-.. ++-||+.++++.+
T Consensus 199 ~~~~F~~iig~S~~m~~v~~---~a---~r~----A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~ 268 (513)
T PRK10820 199 DVSAFSQIVAVSPKMKHVVE---QA---RKL----AMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPE 268 (513)
T ss_pred CCCCHHHHEECCHHHHHHHH---HH---HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCH
T ss_conf 41687775108999999999---99---998----598998899898982499999999966887899826888998996
Q ss_pred ---HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCC----CCEE
Q ss_conf ---64442033245999999998737801206323564144557898862688988998998530--32357----7829
Q gi|254780545|r 218 ---VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFESS----EGVI 288 (647)
Q Consensus 218 ---~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~~----~~v~ 288 (647)
-+...|-....-.-+|+.| ..-.+|+|||+.+-.. -..-|-++|.+-- -..++ -.|=
T Consensus 269 ~l~eseLFG~a~~~~~G~fe~A---~gGTLfLdEI~~l~~~-----------~Q~kLLr~Lq~~~~~rvG~~~~~~~dvR 334 (513)
T PRK10820 269 DAVESELFGHAPEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 (513)
T ss_pred HHHHHHHCCCCCCCCCCCEEEC---CCCEEEEECHHHCCHH-----------HHHHHHHHHHCCEEEECCCCCEEEEEEE
T ss_conf 7899986387666889755785---8988999783659999-----------9999999986897996599853567789
Q ss_pred EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC------CCCCCCCCHHHHHHH-HH
Q ss_conf 99962981008833316564231-------4100013478899-99---9998548------877732110245441-20
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN------VPLAPNVILKTIARG-TP 350 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~------~~~~~~~d~~~la~~-t~ 350 (647)
+|||||+.= ..+.+.|+|.+ .+.+.+|-..+|. +| .++++.. ++. +.++-+.+... ..
T Consensus 335 iIaaT~~dL---~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~-~~ls~~a~~~L~~y 410 (513)
T PRK10820 335 VICATQKNL---VELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR-PKLSADLSTVLTRY 410 (513)
T ss_pred EEECCCHHH---HHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHC
T ss_conf 996265309---99987298508899986167255888344655699999999999999759998-98479999999708
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 3798--999999999876455320242104568
Q gi|254780545|r 351 GFSG--ADLRNLVNEAALMAARRNRRLVTMQEF 381 (647)
Q Consensus 351 g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl 381 (647)
.|-| .+|+|++..|.+.+ ....|+.+|+
T Consensus 411 ~WPGNVREL~n~iera~~~~---~g~~i~~~di 440 (513)
T PRK10820 411 GWPGNVRQLKNAIYRALTQL---EGYELRPQDI 440 (513)
T ss_pred CCCCHHHHHHHHHHHHHHHC---CCCCCCHHHC
T ss_conf 99979999999999999957---9985349982
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=3.2e-07 Score=71.24 Aligned_cols=181 Identities=19% Similarity=0.283 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------EECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997----------0205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------FFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------f~~~~~s 215 (647)
-|+||.|++.+++.|+..+. -.++|.+.||+||.|+||+.+|+++|...-+. +..-+.+
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~-----------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIE-----------QNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 83312594999999999998-----------5996744877899983299999999999857899997665587518999
Q ss_pred HHHHH---HHHCC----------------------HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 88644---42033----------------------2459999999987----3780120632356414455789886268
Q gi|254780545|r 216 DFVEL---FVGVG----------------------ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE 266 (647)
Q Consensus 216 ~~~~~---~~g~g----------------------~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e 266 (647)
||.-. |...| -..||++-..... ....|+.||+.|.+
T Consensus 71 Dl~~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------------
T ss_conf 778860562003454557789876530268777879999999999731885688479998897871--------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 89889989985303235778299996298100883331656423141000134788999999985488777321102454
Q gi|254780545|r 267 REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIA 346 (647)
Q Consensus 267 ~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la 346 (647)
.++.-|.||--+. +...+++++- |+.++.|=|-+.= |- .+|.+..-+.+.-..+|+.+... -...++...+.
T Consensus 137 ~~~AaNaLLKtLE--EP~~~~fILi-t~~~~~lLpTI~S--RC-Q~i~F~~l~~~~i~~~L~~~~~~--~~~~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLE--EPGNGTLILI-APSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDN--INEILDHPELL 208 (314)
T ss_pred CHHHHHHHHHHHC--CCCCCEEEEE-ECCHHHCCHHHHC--CC-EEEECCCCCHHHHHHHHHHCCCC--CCCCCCHHHHH
T ss_conf 9999999998614--7878569999-7993649146641--87-56338998999999999971664--33102789999
Q ss_pred HHHHCCCHHHHHH
Q ss_conf 4120379899999
Q gi|254780545|r 347 RGTPGFSGADLRN 359 (647)
Q Consensus 347 ~~t~g~sgAdi~~ 359 (647)
....|--|+-|++
T Consensus 209 ~~A~GspG~a~~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHHCCCHHHHHHH
T ss_conf 8817997999999
No 153
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66 E-value=1.4e-06 Score=66.55 Aligned_cols=167 Identities=25% Similarity=0.398 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHH
Q ss_conf 24225698898528899999999987433567664201233311003787425888999974246---997020585788
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDF 217 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~ 217 (647)
.-..+..+|+.|+|..|+.|. +|-++|.+ +.|-..|||+|.-||||+-|.||+-+|- |.-.+.++-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~------~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALV------RNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCCCHHHHHCCHHHHHHHH------HHHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 899767898727318999999------98999972--8865236776377777479999999998741770799768888
Q ss_pred HHHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-C-CCCCEEEEEECC
Q ss_conf 6444203324599999999873-780120632356414455789886268898899899853032-3-577829999629
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF-E-SSEGVILIAATN 294 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~-~-~~~~v~vi~aTn 294 (647)
.. +-+|+++-|.. -.-|||+|++- + ..+ |. .--+|=+-|||= + ...+|++-|+.|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~g-d~---~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLS-F--------EEG-DD---AYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HH---------HHHHHHHHHCCCCEEEEEECCCC-C--------CCC-CH---HHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 65---------79999999618860899956777-7--------778-13---899999985388556887079997158
Q ss_pred CCCCCCHHHC-C-------------------CCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8100883331-6-------------------56423141000134788999999985488777
Q gi|254780545|r 295 RPDVLDAALL-R-------------------PGRFDRQITVPNPDIVGREHILMVHSRNVPLA 337 (647)
Q Consensus 295 ~~~~lD~al~-R-------------------pgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~ 337 (647)
|-..|..-.. + +-||--.+.+..||.++-..|...|+++..++
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CCCCCCHHHHHCCCCCCCCCHHHHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 753362766427784023580677877625464234045036878899999999999985999
No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.65 E-value=1.1e-07 Score=74.60 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=71.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHH
Q ss_conf 2569889-8528899999999987433567664201233311003787425888999974246---99702058578864
Q gi|254780545|r 144 SVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVE 219 (647)
Q Consensus 144 ~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~ 219 (647)
+.+|+.. +-.+..+..+.....|.++.. . -..|+||+||||||||.||-|||+++ |.+.+.++.++++.
T Consensus 65 ~~~Feny~~~~~~q~~al~~a~~y~enf~------~-~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~ 137 (242)
T PRK07952 65 NCSFENYRVECEGQMNALSKARQYVEEFD------G-NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 137 (242)
T ss_pred CCEEECEECCCHHHHHHHHHHHHHHHHHC------C-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 88421201587778999999999998654------3-8871799789999789999999999998799499977999999
Q ss_pred HHH---HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 442---03324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 220 LFV---GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 220 ~~~---g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
..- +.+...-.++++... .+-.+.|||+-+ .+. .+.....|++++-.= ......+|+ .||.+
T Consensus 138 ~lr~t~~~~~~~e~~~l~~l~--~~dLLIiDdlG~---e~~------t~~~~~~lf~iId~R--y~~~kp~Ii--tTNl~ 202 (242)
T PRK07952 138 AMKDTFRNSETSEEQLLNDLS--NVDLLVIDEIGV---QTE------SRYEKVIINQIVDRR--SSSKRPTGM--LTNSN 202 (242)
T ss_pred HHHHHHHCCCCCHHHHHHHHH--CCCEEEEECCCC---CCC------CHHHHHHHHHHHHHH--HHCCCCEEE--EECCC
T ss_conf 999998068756999999863--189898730146---658------888999999999999--971698899--81799
No 155
>PRK06620 hypothetical protein; Validated
Probab=98.62 E-value=1.1e-06 Score=67.49 Aligned_cols=182 Identities=14% Similarity=0.234 Sum_probs=104.8
Q ss_pred HHHHHHHHH-HHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 999987433-567664201233-311003787425888999974246997020585788644420332459999999987
Q gi|254780545|r 161 QEIVDFLCD-PQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKN 238 (647)
Q Consensus 161 ~~~v~~l~~-~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~ 238 (647)
.+.+.++++ |+. .|..+. +.+++|||+|+|||.|+++.+..++..++. ...+. .....
T Consensus 25 ~~A~~~i~~wp~~---~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~--~~~~~---------------~~~~~ 84 (214)
T PRK06620 25 DQAYNIIKNWQCM---FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN---------------EEILE 84 (214)
T ss_pred HHHHHHHHHCHHC---CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEC--HHHCC---------------HHHHH
T ss_conf 9999999836302---5668655559998799998899999999982858815--12145---------------87884
Q ss_pred HCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC--CEEEE
Q ss_conf 3780120632356414455789886268-89889989985303235778299996298100883331656423--14100
Q gi|254780545|r 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD--RQITV 315 (647)
Q Consensus 239 ~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd--~~i~~ 315 (647)
... .+.||.+|.+ +++ --+..|.+ ..+.+-+++.++..|..+.=.-|| -|+- ..+.+
T Consensus 85 ~~~-~~iiddid~~-----------~e~~lfhlfN~~-------~~~~~~llits~~~p~~~~L~DL~-SRl~~~~~~~i 144 (214)
T PRK06620 85 KYN-AFIIEDIENW-----------QEPALLHIFNII-------NEKQKYLLLTSSDKSRNFTLPDLS-SRIKSVLSILL 144 (214)
T ss_pred HCC-CEEEECCCCC-----------CHHHHHHHHHHH-------HHCCCEEEEEECCCCCCCCCCCHH-HHHHCCCEEEC
T ss_conf 379-3798467757-----------467999999999-------715987999827985224535789-99854644332
Q ss_pred CHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 01347889999999854--88777321102454412037989999999998764553202421045689997
Q gi|254780545|r 316 PNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 316 ~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
..||.+-+..++..++. +..++++| ++.|+++.+ .|-..|..++..--..+. ..++.||..-+.+++
T Consensus 145 ~~PdD~l~~~ll~k~~~~r~i~i~~~v-i~yl~~ri~-Rs~~~l~~~v~~ld~~sl-~~kr~Iti~likevL 213 (214)
T PRK06620 145 NSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLP-REYSKIIEILENINYFAL-ISKRKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH
T ss_conf 698989999999999998699887559-999999851-789999999999999999-839998899999983
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=98.62 E-value=3.7e-08 Score=78.04 Aligned_cols=91 Identities=33% Similarity=0.587 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHHHHHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246-----997020585788644
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVEL 220 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~~~~~ 220 (647)
|.|||.|+|++...|+-.| +-| ++| ..||.||||+|||.-|.|+|.+. .-+|+.+.+|+=.
T Consensus 23 ~LddIVgQehIVkRLK~YV----------k~~-smP-HLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~-- 88 (863)
T PRK04132 23 RLDEIVGQDHIVKRLKHYV----------KTG-SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER-- 88 (863)
T ss_pred CHHHHCCHHHHHHHHHHHH----------CCC-CCC-CEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCC--
T ss_conf 1655227499999999886----------238-885-44304899877144788888876143145556641442123--
Q ss_pred HHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHC
Q ss_conf 420332459999999987378------0120632356414
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGR 254 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~ 254 (647)
|---+|..-..-....| -++||||.|+++.
T Consensus 89 ----~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~ 124 (863)
T PRK04132 89 ----GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (863)
T ss_pred ----CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf ----634888877750686645786542464436564010
No 157
>PRK09087 hypothetical protein; Validated
Probab=98.61 E-value=1.2e-06 Score=67.17 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=113.3
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 422569889-8528899999999987433567664201233311003787425888999974246997020585788644
Q gi|254780545|r 142 VGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 142 ~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
.+.-+|+|. +|-.. ++++.++.+.. ..+-+.+.||||+|+|||.|+++.+.+++..++... .+..
T Consensus 15 ~~~~~~dnF~vs~~N-----~~a~~~l~~~~------~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~--~~~~- 80 (226)
T PRK09087 15 QPGYGRDDLVVTESN-----RAAVSLVDRWP------NWPSPVVVLAGPVGSGKTHLASIWREKADALLVHPN--EIGS- 80 (226)
T ss_pred CCCCCCCCEEECCCH-----HHHHHHHHHCC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH--HCCH-
T ss_conf 877873364775769-----99999998472------677775899899999886999999998099683668--7474-
Q ss_pred HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 42033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
+... ....+.++||.+|..+ .+|. .| .--+.-+..+.+-+++.+...|..++
T Consensus 81 ----------~~~~---~~~~~~~~idd~d~~~----------~dEe--~L---Fhl~N~~~~~~~~LLlts~~~p~~l~ 132 (226)
T PRK09087 81 ----------DAAN---AAAERPVLIEDIDAGG----------FDET--GL---FHLINSVRQAGTSLLMTSRLWPSAWN 132 (226)
T ss_pred ----------HHHH---HHCCCCEEEECCCCCC----------CCHH--HH---HHHHHHHHHCCCEEEEECCCCHHHCC
T ss_conf ----------6676---5327988997487777----------4789--99---99999998539879998898956667
Q ss_pred ---HHHCCCCCC--CCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf ---333165642--31410001347889999999854--88777321102454412037989999999998764553202
Q gi|254780545|r 301 ---AALLRPGRF--DRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 301 ---~al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
|=|.= || --.+.++.||.+.+..++..++. +..++++| +..|.++.+ .|=..|..++..-=..+ -..+
T Consensus 133 ~~L~DL~S--RL~~~~~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v-~~yll~r~~-Rs~~~l~~~l~~LD~~S-L~~k 207 (226)
T PRK09087 133 VKLPDLKS--RLKAATVVEIGEPDDALLSGVIFKLFADRQLYVEPHV-VYYLVSRME-RSLFAAQTIVERLDRLA-LERK 207 (226)
T ss_pred CCCHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHH-HHCC
T ss_conf 62468999--9857857983599989999999999875765788889-999998458-89999999999999999-9818
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 42104568999750
Q gi|254780545|r 374 RLVTMQEFEDAKDK 387 (647)
Q Consensus 374 ~~i~~~dl~~A~~r 387 (647)
+.||..=+.+.++.
T Consensus 208 r~ITiplikevL~~ 221 (226)
T PRK09087 208 SRITRALAAEVLNE 221 (226)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99989999999985
No 158
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.61 E-value=3.5e-07 Score=70.96 Aligned_cols=228 Identities=26% Similarity=0.382 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC
Q ss_conf 42256988985288999999-99987433567664201233311003787425888999974246-------99702058
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS 213 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~ 213 (647)
.....|.-|.|+|..|.-|- ..|+ | --.|+|..|+.|||||-+|||+|.=. |+||=.--
T Consensus 11 r~~~pf~aivGqd~lk~aL~l~av~----P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP 77 (423)
T COG1239 11 RENLPFTAIVGQDPLKLALGLNAVD----P---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDP 77 (423)
T ss_pred HHCCCHHHHCCCHHHHHHHHHHHCC----C---------CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 7516656543753777887653026----3---------10426876688752779999999867963321688788998
Q ss_pred -HH------------------------HHHHHHHHCCHHHH-------HH------HHH---HHHHHCCHHEEHHHHHHH
Q ss_conf -57------------------------88644420332459-------99------999---998737801206323564
Q gi|254780545|r 214 -GS------------------------DFVELFVGVGASRV-------RD------MFE---QAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 214 -~s------------------------~~~~~~~g~g~~~v-------r~------lf~---~a~~~~p~iifiDeida~ 252 (647)
.+ .|+..=+|.++.|| +. .|+ .|+.|- -|+||||+--+
T Consensus 78 ~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL 156 (423)
T COG1239 78 DDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLL 156 (423)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCC-CEEEEECCCCC
T ss_conf 87055519998620232445422100312238876304330045679999726830027751100358-87987233435
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHH---------CCCC--CCCCEEEEEECC------CCCCCCHHHCCCCCCCCEEEE
Q ss_conf 14455789886268898899899853---------0323--577829999629------810088333165642314100
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEM---------DGFE--SSEGVILIAATN------RPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~m---------dg~~--~~~~v~vi~aTn------~~~~lD~al~RpgRfd~~i~~ 315 (647)
. ++..|+||.-+ +|.+ -.-.+++||+.| ||..|| ||.-+|.+
T Consensus 157 ~--------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-------Rfg~~v~~ 215 (423)
T COG1239 157 D--------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-------RFGLEVDT 215 (423)
T ss_pred C--------------HHHHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCCCCCCCHHHHH-------HHCCEEEC
T ss_conf 1--------------89999999999717740335750313676179996448544663246675-------41115623
Q ss_pred CHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHCCCCCC
Q ss_conf 0134-7889999999854887773211024544120379899999999987645532024210456899-9750136865
Q gi|254780545|r 316 PNPD-IVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED-AKDKILMGAE 393 (647)
Q Consensus 316 ~~P~-~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~-A~~rv~~G~e 393 (647)
..|. .+.|.+|.+.-+.- --+|+.=++.++..+ .-++ +.+.++|+....+...|-.. .+-.+.
T Consensus 216 ~~~~~~~~rv~Ii~r~~~f-~~~Pe~f~~~~~~~~---------~~lR-~~ii~ar~~l~~V~l~~~~~~~ia~~~---- 280 (423)
T COG1239 216 HYPLDLEERVEIIRRRLAF-EAVPEAFLEKYADAQ---------RALR-ARIIAARSLLSEVELDDDAETKIAELC---- 280 (423)
T ss_pred CCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHH---------HHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHH----
T ss_conf 4788788889999998875-008299999999999---------9999-999999844666467677999999999----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5676668667789999999999999850
Q gi|254780545|r 394 RRSTAMTEEEKKITAYHEAGHAVVACHV 421 (647)
Q Consensus 394 k~~~~~~~~ek~~vAyHEAGHAlva~~l 421 (647)
.+..+-. .+.-+..+.++.|+.+|.-
T Consensus 281 ~~~~v~g--~radi~~~r~a~a~aa~~G 306 (423)
T COG1239 281 ARLAVDG--HRADIVVVRAAKALAALRG 306 (423)
T ss_pred HHHCCCC--CCHHHHHHHHHHHHHHHCC
T ss_conf 9856578--7425678999999987539
No 159
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.57 E-value=2e-06 Score=65.42 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHC---CCCCCEECCCHHHHHH-----HH
Q ss_conf 985288999999999874335676642012333110037874258889999742---4699702058578864-----44
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG---EANVPFFTISGSDFVE-----LF 221 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~---e~~~~f~~~~~s~~~~-----~~ 221 (647)
+.|.-.+-+++.+.+. +. ++...-||+.|++||||.++|++|-. ..+-||+.++++.+-+ ..
T Consensus 141 liG~S~am~~v~~~i~------~~----A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseL 210 (441)
T PRK10365 141 MVGKSPAMQHLLSEIA------LV----APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESEL 210 (441)
T ss_pred CEECCHHHHHHHHHHH------HH----HCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 6668999999999999------98----4889948998999810999999999657877898079878989845558986
Q ss_pred HH------CCHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCC----CCCEE
Q ss_conf 20------3324-5999999998737801206323564144557898862688988998998530--3235----77829
Q gi|254780545|r 222 VG------VGAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFES----SEGVI 288 (647)
Q Consensus 222 ~g------~g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~----~~~v~ 288 (647)
.| .|+. +...+|+.| ....+|+|||+.+-.. -..-|-.+|.+-. -+.+ .-.|=
T Consensus 211 FG~~~gaftga~~~~~g~~~~A---~gGTLfLdeI~~l~~~-----------~Q~kLl~~l~~~~~~~~g~~~~~~~d~R 276 (441)
T PRK10365 211 FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPM-----------MQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred CCCCCCCCCCCCCCCCCCEEEC---CCCEECCCCCCCCCHH-----------HHHHHHHHHHHHHHCCCCCCCEEECCCE
T ss_conf 1775568789653468987788---9982550231529999-----------9999998777521000588734413637
Q ss_pred EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHHH-HC
Q ss_conf 99962981008833316564231-------41000134788999----999985488----77-7321102454412-03
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARGT-PG 351 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~t-~g 351 (647)
+|+|||+.= ..+.+.|+|.. .+.+.+|-..+|.+ +..++++.. .. -..++-+.+.... .-
T Consensus 277 iIaat~~~l---~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 353 (441)
T PRK10365 277 LIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EEECCCCCH---HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 998378899---99988198258999886011137826000620099999999999999849998888999999997099
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 798--9999999998764553202421045689997
Q gi|254780545|r 352 FSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 352 ~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
|-| .+|+|++..|.+.+ ....|+..|+..++
T Consensus 354 WPGNvREL~n~iera~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 354 WPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCHHHHHHHHHHHHHHHC---CCCCCCHHHCCHHH
T ss_conf 9989999999999999957---89868846575433
No 160
>KOG1514 consensus
Probab=98.57 E-value=1.7e-06 Score=65.94 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=114.1
Q ss_pred CEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHHHH---HHHHHHC-------CH------HHHHHHHHHH
Q ss_conf 11003787425888999974246----------997020585788---6444203-------32------4599999999
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGSDF---VELFVGV-------GA------SRVRDMFEQA 236 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s~~---~~~~~g~-------g~------~~vr~lf~~a 236 (647)
-+-.+|-||||||.+...+-.+. ..+|+.+.|-.+ .+.|.+. .. ..++.-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 79984699988321299999999987750578986079871446158899999999975557430778899998654167
Q ss_pred H-HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-C-CCCCC-CE
Q ss_conf 8-7378012063235641445578988626889889989985303235778299996298100883331-6-56423-14
Q gi|254780545|r 237 K-NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-R-PGRFD-RQ 312 (647)
Q Consensus 237 ~-~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-R-pgRfd-~~ 312 (647)
+ +..||||.|||+|.+..++ +-+|--|+ .+-- ..+..++|||-.|.-|....-|. | .-|++ ++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~f-dWpt-~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIF-DWPT-LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEECCHHHHHCCC-----------HHHHHHHH-CCCC-CCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEE
T ss_conf 878787799963578773520-----------98897774-0776-7898669999516564779885431123306505
Q ss_pred EEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHC-------CCCCHHHHHH
Q ss_conf 10001347889999999854887773211024544120379899--99999998764553202-------4210456899
Q gi|254780545|r 313 ITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGAD--LRNLVNEAALMAARRNR-------RLVTMQEFED 383 (647)
Q Consensus 313 i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAd--i~~~~~eAa~~a~r~~~-------~~i~~~dl~~ 383 (647)
|.+.+=+...-.+|+.--+++...=.+--++-+|+.-.--||-- --.+|+.|+-.|-.+.. ..|++.|+.+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~ 650 (767)
T KOG1514 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME 650 (767)
T ss_pred EECCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHH
T ss_conf 51377889999999998603154314248999998877504227888899899999754221345555332443299999
Q ss_pred HHHHCCC
Q ss_conf 9750136
Q gi|254780545|r 384 AKDKILM 390 (647)
Q Consensus 384 A~~rv~~ 390 (647)
|+..+..
T Consensus 651 Ai~em~~ 657 (767)
T KOG1514 651 AINEMLA 657 (767)
T ss_pred HHHHHHH
T ss_conf 9998750
No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.56 E-value=4.8e-07 Score=69.97 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHH-----
Q ss_conf 88985288999999999874335676642012333110037874258889999742469---9702058578864-----
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVE----- 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~----- 219 (647)
+|+.|...+-+.+.+.+ .++ ++.+.-||+.|.|||||+++|++|-.... -||+.++++.+-+
T Consensus 6 ~~liG~S~~m~~v~~~~------~~~----A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 6 DNLLGEANSFLEVLEQV------SHL----APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCEECCHHHHHHHHHH------HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 99858999999999999------999----68899989889898379999999996588679997788779899778899
Q ss_pred HHHHC------CHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCC---C----
Q ss_conf 44203------324-5999999998737801206323564144557898862688988998998530--323---5----
Q gi|254780545|r 220 LFVGV------GAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFE---S---- 283 (647)
Q Consensus 220 ~~~g~------g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~---~---- 283 (647)
...|. |+. +...+|+.| ...-+|+|||+.+-.. .-.+||.-++ .|. +
T Consensus 76 ~LFG~~~g~~~~~~~~~~g~le~a---~gGTL~L~eI~~l~~~--------------~Q~~Ll~~l~~~~~~r~g~~~~~ 138 (325)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPL 138 (325)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHCC---CCCEEEEECHHHCCHH--------------HHHHHHHHHHCCCEEECCCCCCC
T ss_conf 872775567677532468734356---8986997374547999--------------99999999864908857998766
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHH
Q ss_conf 77829999629810088333165642314-------100013478899
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGRE 324 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~ 324 (647)
.-+|=+|++||+.- +.+..-|+|... +.|.+|...+|.
T Consensus 139 ~~~~RiIa~t~~~l---~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~ 183 (325)
T PRK11608 139 QVNVRLVCATNADL---PAMVNEGTFRADLLDRLAFDVVQLPPLRERQ 183 (325)
T ss_pred CCCEEEEECCCHHH---HHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 56468871332208---9999839567999856530111586845471
No 162
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54 E-value=1.1e-06 Score=67.48 Aligned_cols=210 Identities=26% Similarity=0.355 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH----H
Q ss_conf 69889852889999999998743356766420123331100378742588899997424---6997020585788----6
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF----V 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~----~ 218 (647)
.+.++.|.-.+-+.+.+.+.- . ++.+.-||+.|++||||.++|++|-.. .+-||+.++++.+ +
T Consensus 136 ~~~~liG~S~~m~~v~~~i~~------~----a~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR------L----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred CCCCCEECCHHHHHHHHHHHH------H----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
T ss_conf 755654689999999999999------8----588997899898982699999999974887799957876788997789
Q ss_pred -HHHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCC-C
Q ss_conf -44420------33245-99999999873780120632356414455789886268898899899853-----03235-7
Q gi|254780545|r 219 -ELFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFES-S 284 (647)
Q Consensus 219 -~~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~-~ 284 (647)
+...| .|+.. ..-+|++| ....+|+|||+.+-.. .. .-|-.+|.+- .|... .
T Consensus 206 e~eLFG~~~gaf~ga~~~~~g~~e~a---~~GTLfLdeI~~L~~~----------~Q-~kLl~~L~~~~~~~~g~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLD----------VQ-TRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHC---CCCCEEHHHHHHCCHH----------HH-HHHHHHHHCCCEEECCCCCEEE
T ss_conf 99970876678788642458736643---8992656636648999----------99-9999998559378579985122
Q ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHH
Q ss_conf 7829999629810088333165642314-------1000134788999----999985488----77-732110245441
Q gi|254780545|r 285 EGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARG 348 (647)
Q Consensus 285 ~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~ 348 (647)
..+=+|++||+.= ..+...|+|..- +.|.+|-..+|.+ ++++++... .. ...++-+.+...
T Consensus 272 ~d~RiIaat~~~L---~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 348 (469)
T PRK10923 272 VDVRIIAATHQNL---EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred ECCEEEEECCCCH---HHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 1437997078799---9986608177999986442401584654465349999999999999985999787899999999
Q ss_pred -HHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -203798--9999999998764553202421045689997
Q gi|254780545|r 349 -TPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 349 -t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
...|-| .+|+|++..+.+.+. ...|+.+|+...+
T Consensus 349 ~~y~WPGNvrEL~n~ier~~~~~~---~~~i~~~dl~~~l 385 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGEL 385 (469)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCC---CCCCCHHHCCHHH
T ss_conf 749999879999999999998579---9825477572988
No 163
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=98.52 E-value=5.7e-07 Score=69.45 Aligned_cols=150 Identities=31% Similarity=0.468 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCC-----
Q ss_conf 988985288999999-99987433567664201233311003787425888999974246-------99702058-----
Q gi|254780545|r 147 FKDVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTIS----- 213 (647)
Q Consensus 147 f~dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~----- 213 (647)
|.=|.|+|..|.-|. -.|+. + --|||.-|.-||||+..||+++.=. ||||=.-.
T Consensus 3 F~AiVGQe~LK~ALLL~Av~P--------~-----iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~ 69 (688)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVNP--------R-----IGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEE 69 (688)
T ss_pred CCCCCCHHHHHHHHHHEEECC--------C-----CCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf 742214279865321002526--------6-----370788778886278988848761602366404788877788704
Q ss_pred --------------------HHHHHHHHHHCCHHHHH-------------HHHH---HHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf --------------------57886444203324599-------------9999---99873780120632356414455
Q gi|254780545|r 214 --------------------GSDFVELFVGVGASRVR-------------DMFE---QAKNNSPCIVFVDEIDAVGRHRG 257 (647)
Q Consensus 214 --------------------~s~~~~~~~g~g~~~vr-------------~lf~---~a~~~~p~iifiDeida~~~~r~ 257 (647)
.-.||++=+|.++-||= ..|+ .|+.+- -|++||||-=|-
T Consensus 70 ~C~~C~~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~Ahr-GiLYiDEVNLLd---- 144 (688)
T TIGR02442 70 WCEECRRKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHR-GILYIDEVNLLD---- 144 (688)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCC-CEEEEEEECCCC----
T ss_conf 006767555204775313587358865877523322130548999871856607886175468-716785200144----
Q ss_pred CCCCCCCHHHHHHHHHHHH---------HHCCCCCC--CCEEEEEECC------CCCCCCHHHCCCCCCCCEEEECHHH-
Q ss_conf 7898862688988998998---------53032357--7829999629------8100883331656423141000134-
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLV---------EMDGFESS--EGVILIAATN------RPDVLDAALLRPGRFDRQITVPNPD- 319 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~---------~mdg~~~~--~~v~vi~aTn------~~~~lD~al~RpgRfd~~i~~~~P~- 319 (647)
| +.+|-||- |=||++-+ ...+.||+=| ||+.|| ||--.|.|.=+.
T Consensus 145 -------D---hlVD~lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG~LRPQLLD-------RFGL~V~v~~~~d 207 (688)
T TIGR02442 145 -------D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD-------RFGLCVDVAASRD 207 (688)
T ss_pred -------C---HHHHHHHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHHHHCHHHHH-------HHHCEEEECCCCC
T ss_conf -------1---4778999987648006763574300114553220378522110223242-------4401155024358
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999999985
Q gi|254780545|r 320 IVGREHILMVHS 331 (647)
Q Consensus 320 ~~~r~~i~~~~~ 331 (647)
.+.|.+|.+.-+
T Consensus 208 ~~~R~Ev~~Rrl 219 (688)
T TIGR02442 208 PEERVEVIRRRL 219 (688)
T ss_pred HHHHHHHHHHHH
T ss_conf 668999999997
No 164
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.52 E-value=4.5e-07 Score=70.19 Aligned_cols=194 Identities=28% Similarity=0.385 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH-----HH
Q ss_conf 889852889999999998743356766420123331100378742588899997424---6997020585788-----64
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-----VE 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-----~~ 219 (647)
.++.|.-.+-+.|++.+.-+ +..+--||+.|.+||||.++|++|-.. ++-||++++++.+ -+
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----------A~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~Es 255 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAES 255 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 97520899999999999999----------68999889889898139999999996688789985788899998567899
Q ss_pred HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-C-C---CC----
Q ss_conf 4420------33245-999999998737801206323564144557898862688988998998530-3-2---35----
Q gi|254780545|r 220 LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-G-F---ES---- 283 (647)
Q Consensus 220 ~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g-~---~~---- 283 (647)
...| .||.. -.-.|+.|. ...+|+|||+.+-.. - | ..||--++ | | .+
T Consensus 256 eLFGh~kGaFtGA~~~r~G~fe~A~---gGTLfLDEI~~Lpl~-----------~-Q--~KLLrvLq~g~iqrvG~~~~~ 318 (510)
T PRK05022 256 ELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA-----------L-Q--AKLLRVLQYGEIQRVGSDRSL 318 (510)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEECHHHCCHH-----------H-H--HHHHHHHHCCEEEECCCCCEE
T ss_conf 8659777886886556788101778---987987574549999-----------9-9--999999847958855899466
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HHH---HHHHCCC--CCC---CCCCHHHHHH
Q ss_conf 778299996298100883331656423-------14100013478899-999---9985488--777---3211024544
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HIL---MVHSRNV--PLA---PNVILKTIAR 347 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i~---~~~~~~~--~~~---~~~d~~~la~ 347 (647)
.-+|=||||||+. | ....+-|||- -.+.|.+|-..+|. +|. .++++.. .+. ..++-+.+..
T Consensus 319 ~vdvRIIAATnrd--L-~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~ 395 (510)
T PRK05022 319 RVDVRVIAATNRD--L-REEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAA 395 (510)
T ss_pred EEEEEEEEECCCC--H-HHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 6668999607835--9-999883963899998762040348086555540999999999999998298989888999999
Q ss_pred H-HHCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf 1-203798--99999999987645532
Q gi|254780545|r 348 G-TPGFSG--ADLRNLVNEAALMAARR 371 (647)
Q Consensus 348 ~-t~g~sg--Adi~~~~~eAa~~a~r~ 371 (647)
. .-.|-| .+|+|++..|++.|...
T Consensus 396 L~~Y~WPGNVRELenvIeRA~lla~~~ 422 (510)
T PRK05022 396 LLQYDWPGNVRELEHVISRAALLARAR 422 (510)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 970999978999999999999971566
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.51 E-value=7.4e-07 Score=68.60 Aligned_cols=124 Identities=16% Similarity=0.267 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC---CHH
Q ss_conf 899999999987433-567664201233311003787425888999974246---9970205857886444203---324
Q gi|254780545|r 155 EAKEDLQEIVDFLCD-PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV---GAS 227 (647)
Q Consensus 155 ~~k~~~~~~v~~l~~-~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~---g~~ 227 (647)
...+-++.++++.++ .+.| + +.-.++||+||||||||.||-|||+|+ |.+.++++.++|++.+-.. ...
T Consensus 160 sprenm~~i~~~~~~fi~~F---~-~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~~~~ 235 (330)
T PRK06835 160 SPRENMENILEKCLNFIKNF---D-KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFNNDN 235 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHC---C-CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCC
T ss_conf 98999999999999998724---7-8888669889999988999999999999879949996299999999997545764
Q ss_pred HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 5999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 228 RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 228 ~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
..+++++.- ..+ -++.||++-+ .. .++ .+.++|...+|.= -..+-=+|-+||.+-
T Consensus 236 ~~~~~~~~l-~~~-DLLIIDDLG~---E~------~t~---~~~~~Lf~iIN~R-~~~~k~tIITTNl~~ 290 (330)
T PRK06835 236 DAPELEDLL-INC-DLLIIDDLGT---ES------ITE---FSKTELFNLINKR-LLMNKKMIISTNLSL 290 (330)
T ss_pred CHHHHHHHH-HHC-CEEEEECCCC---CC------CCH---HHHHHHHHHHHHH-HHCCCCEEEECCCCH
T ss_conf 489999999-618-9899721034---55------886---8999999999999-867999799889998
No 166
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=98.51 E-value=1.1e-07 Score=74.60 Aligned_cols=89 Identities=35% Similarity=0.583 Sum_probs=68.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 6988-985288999999999874335676642012-----3331100378742588899997424699702058578864
Q gi|254780545|r 146 TFKD-VAGVDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 146 ~f~d-v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
..|. |.|+++||.-+. --|+|.-+=..|--. .||.||+.||-|.|||=+||-+|.=++.||+.+-+|-|-|
T Consensus 9 ~LD~yIiGQ~~AKk~VA---iALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTE 85 (463)
T TIGR00390 9 ELDKYIIGQDEAKKAVA---IALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 85 (463)
T ss_pred HHCCCCCCHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 51442206366788999---998866776128711135658743043278898544799999998448914666410011
Q ss_pred H-HHH-CCHHHHHHHHHHHH
Q ss_conf 4-420-33245999999998
Q gi|254780545|r 220 L-FVG-VGASRVRDMFEQAK 237 (647)
Q Consensus 220 ~-~~g-~g~~~vr~lf~~a~ 237 (647)
. ||| .=+|-||||-+.|-
T Consensus 86 VGYVGrdVeSmvRDL~~~aV 105 (463)
T TIGR00390 86 VGYVGRDVESMVRDLVDTAV 105 (463)
T ss_pred CCEECCCHHHHHHHHHHHHH
T ss_conf 02142410036787899999
No 167
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=8.5e-07 Score=68.16 Aligned_cols=199 Identities=29% Similarity=0.433 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHH
Q ss_conf 2422569889852889999999998743356766420123331100378742588899997424----699702058578
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSD 216 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~ 216 (647)
.-..-.|+|+.|....-+++.|-+. .|...| .-||+.|++||||+++|++|... ++-||++++++.
T Consensus 71 ~~~~~~~~~LIG~~~~~~~~~eqik------~~ap~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 71 YLKSEALDDLIGESPSLQELREQIK------AYAPSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred HCCCHHHHHHHCCCHHHHHHHHHHH------HHCCCC----CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 1022156666356888999999998------618999----847986688753889999999861213589879977777
Q ss_pred HHHHHH-----H------CCH-HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC----
Q ss_conf 864442-----0------332-459999999987378012063235641445578988626889889989985303----
Q gi|254780545|r 217 FVELFV-----G------VGA-SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG---- 280 (647)
Q Consensus 217 ~~~~~~-----g------~g~-~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg---- 280 (647)
+-+--. | .|+ ..-.-+|++| ---++|+|||--+- ..+ .-.||.-||-
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP-------~~~-------Q~kLl~~le~g~~~ 203 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLP-------PEG-------QEKLLRVLEEGEYR 203 (403)
T ss_pred HCCCHHHHHHHCCCCCEEECCCCCCCCHHEEC---CCCEEEHHHHHHCC-------HHH-------HHHHHHHHHCCCEE
T ss_conf 37677777773200000025667867642052---79777656365379-------858-------99999998718657
Q ss_pred -CCC----CCCEEEEEECCCCCCCCHHHCC-CCCCC--CEEEECHHHHHHHH-HH-------HHHHHCCCCCCCCCCHHH
Q ss_conf -235----7782999962981008833316-56423--14100013478899-99-------999854887773211024
Q gi|254780545|r 281 -FES----SEGVILIAATNRPDVLDAALLR-PGRFD--RQITVPNPDIVGRE-HI-------LMVHSRNVPLAPNVILKT 344 (647)
Q Consensus 281 -~~~----~~~v~vi~aTn~~~~lD~al~R-pgRfd--~~i~~~~P~~~~r~-~i-------~~~~~~~~~~~~~~d~~~ 344 (647)
..+ ...|-+|+|||- .++.++++ ..=+. -.+.|.+|...+|. +| ++.+++.+.+..-++...
T Consensus 204 rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred ECCCCCCCCCCCEEEECCCC--CHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 66888886777404513566--8799987405255641675431897243555599999999999999739998888899
Q ss_pred HHHHHHCC--CH--HHHHHHHHHHHHHH
Q ss_conf 54412037--98--99999999987645
Q gi|254780545|r 345 IARGTPGF--SG--ADLRNLVNEAALMA 368 (647)
Q Consensus 345 la~~t~g~--sg--Adi~~~~~eAa~~a 368 (647)
..+....| .| -+|.|+|..+...+
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999984889983999999999999973
No 168
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.46 E-value=4.2e-07 Score=70.38 Aligned_cols=210 Identities=30% Similarity=0.432 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH-
Q ss_conf 225698898528899999999987433567664201233311003787425888999974246---9970205857886-
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV- 218 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~- 218 (647)
..-+|+||.|-..+-.++.+. .+..++.+--||+.|.+||||-|+|++|-+.. +-||+++.+.-+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~----------akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLEL----------AKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred CCCCHHHHCCCCHHHHHHHHH----------HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf 536610020589999999999----------9863389982899537886689999998744843479807876433888
Q ss_pred ----HHHHH------CCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHH--CCCCC
Q ss_conf ----44420------33245--999999998737801206323564144557898862688988-99899853--03235
Q gi|254780545|r 219 ----ELFVG------VGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLVEM--DGFES 283 (647)
Q Consensus 219 ----~~~~g------~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~~m--dg~~~ 283 (647)
+-..| .||.+ =.-+|+.|. .--+|+|||-.+-. + -|. |-..|.|= -...+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl---------~---LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPL---------P---LQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEECC---CCEEEEHHHCCCCH---------H---HHHHHHHHHHHCEEEECCC
T ss_conf 8888887276776424644579976054416---98377123203998---------9---9999999875353785378
Q ss_pred C----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH-H--H-----HHHHCCC----C-CCCC
Q ss_conf 7----782999962981008833316564231-------41000134788999-9--9-----9985488----7-7732
Q gi|254780545|r 284 S----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH-I--L-----MVHSRNV----P-LAPN 339 (647)
Q Consensus 284 ~----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~-i--~-----~~~~~~~----~-~~~~ 339 (647)
. -.|=||||||+.= .-+..-|||-+ .+.+.+|-..+|.+ | | +.|.++. + ++++
T Consensus 375 t~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCEEEEEEEEECCCCCH---HHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 875356789994257589---99986396165530030401114777233820189999999999998728876668999
Q ss_pred CCHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHH
Q ss_conf 110245441203798--9999999998764553202421045689-997
Q gi|254780545|r 340 VILKTIARGTPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFE-DAK 385 (647)
Q Consensus 340 ~d~~~la~~t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~-~A~ 385 (647)
+ +..|.+. -|-| .+|+|++-.+.+.+ .+...|+..|+- .++
T Consensus 452 a-~~~L~~y--~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 452 A-LALLLRY--DWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred H-HHHHHHC--CCCCHHHHHHHHHHHHHHCC--CCCCEEEHHHCCHHHH
T ss_conf 9-9999868--99960999999999998106--8866222522620231
No 169
>KOG2680 consensus
Probab=98.44 E-value=3.8e-06 Score=63.45 Aligned_cols=185 Identities=24% Similarity=0.369 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf 88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g 225 (647)
.-..|+-.+....--++...++ |--.-|.+|+.||||||||-+|-.+|.+.| +||-+++||++.+.-..-+
T Consensus 40 ~GmVGQ~~AR~Aagvi~kmi~e-------gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKT 112 (454)
T KOG2680 40 EGMVGQVKARKAAGVILKMIRE-------GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKT 112 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC-------CCCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEEEECCCHH
T ss_conf 6631158888876799999872-------863213899724898884410000245407887503650222221000177
Q ss_pred HHHHHHHHHHHHHHCCHHEEHHHHHHH-------HCCCCCCCCCCC--------HHHHHHH----HHHHHHHCCCC-CCC
Q ss_conf 245999999998737801206323564-------144557898862--------6889889----98998530323-577
Q gi|254780545|r 226 ASRVRDMFEQAKNNSPCIVFVDEIDAV-------GRHRGIGLGGGN--------DEREQTL----NQLLVEMDGFE-SSE 285 (647)
Q Consensus 226 ~~~vr~lf~~a~~~~p~iifiDeida~-------~~~r~~~~~~~~--------~e~~~~l----n~ll~~mdg~~-~~~ 285 (647)
++ + .+|-..+--|-+=.|-+.| --.|.....|.. .+-| |+ +.+...++-=. ...
T Consensus 113 EA-l----tQAfRksiGvrIKEetevIEGEVVeiqidRp~tg~g~k~GKlt~kTtdME-t~ydlG~Kmi~~l~KeKV~aG 186 (454)
T KOG2680 113 EA-L----TQAFRKSIGVRIKEETEVIEGEVVEIQIDRPATGMGSKVGKLTLKTTDME-TIYDLGMKMIESLTKEKVQAG 186 (454)
T ss_pred HH-H----HHHHHHHHCEEEEHEEEEECCEEEEEEEECCCCCCCCCCCEEEEEECCHH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 99-9----99988851647400001430058999960466676764444677521115-588788999877657533678
Q ss_pred CEEEEE-ECCCCCCCCHHHCCCCCCC----CEEEECHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 829999-6298100883331656423----14100013478--8999999985488777321102454412037
Q gi|254780545|r 286 GVILIA-ATNRPDVLDAALLRPGRFD----RQITVPNPDIV--GREHILMVHSRNVPLAPNVILKTIARGTPGF 352 (647)
Q Consensus 286 ~v~vi~-aTn~~~~lD~al~RpgRfd----~~i~~~~P~~~--~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~ 352 (647)
.||.|- |+-+...|-..+.|++++| ..=+|.-|+-+ -|++.. |. ..+ -+++.+-.+|.||
T Consensus 187 DVI~idka~GkitKlGrSf~rsrdyDamG~~tkfVqCPeGElqkrkevv--ht--vsL---HeIDViNSrtqG~ 253 (454)
T KOG2680 187 DVITIDKASGKITKLGRSFTRSRDYDAMGSQTKFVQCPEGELQKRKEVV--HT--VSL---HEIDVINSRTQGF 253 (454)
T ss_pred CEEEEECCCCEEEHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHEEEEE--EE--EEE---CCCCCCCCCCCCE
T ss_conf 5599870246300210120103467765776514239931441002335--76--430---0013345566524
No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.3e-06 Score=65.08 Aligned_cols=134 Identities=23% Similarity=0.315 Sum_probs=93.3
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHH--H--CCHHHHHHHHHHHH
Q ss_conf 123331100378742588899997424699-------7---------02058578864442--0--33245999999998
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFV--G--VGASRVRDMFEQAK 237 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~--g--~g~~~vr~lf~~a~ 237 (647)
.|.|.+.||.||+|+||+.+|+++|...-+ | +-+-+.+||...-- | .|-..||++-+.+.
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~ 99 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVS 99 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99543787689999789999999999982899999998888989999973899987998467888788999999999986
Q ss_pred HH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEE
Q ss_conf 73----78012063235641445578988626889889989985303235778299996298100883331656423141
Q gi|254780545|r 238 NN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQI 313 (647)
Q Consensus 238 ~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i 313 (647)
.. .--|++||+.|.+- ++.-|.||--+. +...++++|-.|++|+.|-|-++= |- .++
T Consensus 100 ~~~~~g~~KV~iI~~ae~m~--------------~~AaNALLKtLE--EPp~~~~fiL~t~~~~~ll~TI~S--RC-q~~ 160 (324)
T PRK06871 100 QFAQQGGNKVVYIQGAERLT--------------EAAANALLKTLE--EPRPNTYFLLQADLSASLLATIYS--RC-QTW 160 (324)
T ss_pred HCCCCCCCEEEEECCHHHHH--------------HHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCHHHH--CC-CCE
T ss_conf 46220596699975888857--------------999999999833--898783899987870103240862--66-120
Q ss_pred EECHHHHHHHHHHHHHH
Q ss_conf 00013478899999998
Q gi|254780545|r 314 TVPNPDIVGREHILMVH 330 (647)
Q Consensus 314 ~~~~P~~~~r~~i~~~~ 330 (647)
.++.|+.+.-.+-|+-.
T Consensus 161 ~~~~p~~~~~~~wL~~~ 177 (324)
T PRK06871 161 LIHVPEEQIALDWLQAQ 177 (324)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 08994999999999974
No 171
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.42 E-value=2.4e-06 Score=64.96 Aligned_cols=227 Identities=21% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------C
Q ss_conf 112422569889852--8899999999987433567664201233311003787425888999974246----------9
Q gi|254780545|r 139 SGNVGSVTFKDVAGV--DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------N 206 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~--~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~ 206 (647)
.+.-++.+..+|.-. .---+|.++|..|+...-+ .-| .-.-+-.+|.||||||...+.+..+. .
T Consensus 253 ~~~~~~lk~~~~vpe~lpcRe~E~~~I~~Fie~~i~--q~G--tG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~ 328 (650)
T PTZ00112 253 KPIIDKLKLQLVVPEYILGREKEAKEIRTFLETGIK--QGG--TGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPW 328 (650)
T ss_pred EECCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 203520110125774477707899999999986411--688--6656999789999800369999999999997089998
Q ss_pred CCEECCCH----------HHHHHHHHHCCH-------HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 97020585----------788644420332-------4599999999873780120632356414455789886268898
Q gi|254780545|r 207 VPFFTISG----------SDFVELFVGVGA-------SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ 269 (647)
Q Consensus 207 ~~f~~~~~----------s~~~~~~~g~g~-------~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~ 269 (647)
..|+.+.| +.+.+...|.-+ .-+...|.. ...|||+.+||+|.+.-++-.
T Consensus 329 F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F~~--~r~p~VlLvDELD~LvTkkQ~----------- 395 (650)
T PTZ00112 329 FNLFEINGVNLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLFNN--NRTPSILIVDEADYIVTKTQK----------- 395 (650)
T ss_pred CEEEEECCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCCCEEEEECHHHHHHHCCCC-----------
T ss_conf 1599973637798788999999998489888678999999998268--997189997157777636774-----------
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCC---CCCCCHHHCCCCCCC-CEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 89989985303235778299996298---100883331656423-14100013478899999998548877732110245
Q gi|254780545|r 270 TLNQLLVEMDGFESSEGVILIAATNR---PDVLDAALLRPGRFD-RQITVPNPDIVGREHILMVHSRNVPLAPNVILKTI 345 (647)
Q Consensus 270 ~ln~ll~~mdg~~~~~~v~vi~aTn~---~~~lD~al~RpgRfd-~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~l 345 (647)
++=-|+ ..-. ..+...||||-.|- |+.|-|-+. .|+- .++.+.+=+.+.-.+|+..-+.+...=++--+.-.
T Consensus 396 VlYNLF-dWPT-~~~SkLIVIaIANTMDLPERL~~RVs--SRLGltRltF~PYt~~QL~eII~sRL~~~~~f~~dAIQl~ 471 (650)
T PTZ00112 396 VLFTLF-DWPT-KKNSKLILIIISNTMDLPYKMKPSCR--SRLAFGRLVFSPYKYQQIEKVIKERLENCEIIDHTALQLC 471 (650)
T ss_pred EEEECC-CCCC-CCCCEEEEEEEEECCCCCHHHHHHHH--HHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 577736-6889-88870799998506786065666655--5228850043998999999999998626777887899999
Q ss_pred HHHHHCCCHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 44120379899999--999987645532024210456899975013
Q gi|254780545|r 346 ARGTPGFSGADLRN--LVNEAALMAARRNRRLVTMQEFEDAKDKIL 389 (647)
Q Consensus 346 a~~t~g~sgAdi~~--~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~ 389 (647)
|+.-...||--=.. +|+.|--.+ +...|+..|+..|.+.+.
T Consensus 472 ARKVAavSGDARRALdICRRAvE~~---~~~ki~~~~i~~a~n~~~ 514 (650)
T PTZ00112 472 ARRVTNYSGDMRKALQICKLAFENK---NGGKITPRDMTRASNMVL 514 (650)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHC---CCCEEEHHHHHHHHHHHH
T ss_conf 8888750314899999999999735---687342489999988885
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.42 E-value=4.3e-07 Score=70.31 Aligned_cols=72 Identities=24% Similarity=0.417 Sum_probs=48.7
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 33311003787425888999974246---997020585788644420332-45999999998737801206323564
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeida~ 252 (647)
-+++++|+||||||||.||-|+|.++ |++.+.++.++|+...-..-. -+.-.-+..--++ .-+++||||-+.
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~-~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK-VDLLIIDDIGYE 179 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf 5882899899998799999999999998398499988599999999987455268999988752-898998236776
No 173
>PRK09183 transposase/IS protein; Provisional
Probab=98.40 E-value=9.3e-07 Score=67.88 Aligned_cols=101 Identities=23% Similarity=0.399 Sum_probs=61.7
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf 3311003787425888999974246---9970205857886444203-32459999999987378012063235641445
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR 256 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r 256 (647)
...|+|+||||||||.||-|++.++ |.+..+++.+++++.+.-. ...+....+.+. -..|-++.|||+--.-.
T Consensus 101 ~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~-l~~~dLLIiDdlG~~~~-- 177 (258)
T PRK09183 101 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 177 (258)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-HCCCCEEEEHHHHCCCC--
T ss_conf 886799899998689999999999998799399978999999999998768599999987-43465144313315468--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 5789886268898899899853032357782999962981
Q gi|254780545|r 257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
+.+..+.+=|++.+- -.. +-++| +||.|
T Consensus 178 -------~~~~~~~lfeli~~R---ye~-~S~Ii-TSn~~ 205 (258)
T PRK09183 178 -------SQEEANLFFQVIAKR---YEK-GAMIL-TSNLP 205 (258)
T ss_pred -------CHHHHHHHHHHHHHH---HCC-CCEEE-ECCCC
T ss_conf -------888999999999998---576-77899-88999
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=4.1e-06 Score=63.25 Aligned_cols=133 Identities=27% Similarity=0.401 Sum_probs=84.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC----CEE---------CCCHHHHHHHH-----HH------CCHHHHHHH
Q ss_conf 0123331100378742588899997424699----702---------05857886444-----20------332459999
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV----PFF---------TISGSDFVELF-----VG------VGASRVRDM 232 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~----~f~---------~~~~s~~~~~~-----~g------~g~~~vr~l 232 (647)
..++|.+.||+||+|+||+.+|+++|...-+ +.. .-+.+|+.... .| .+-..||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 69942068758999878999999999998379979765433889996689989687753444454311234869999999
Q ss_pred HHHHHHHC----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC
Q ss_conf 99998737----80120632356414455789886268898899899853032357782999962981008833316564
Q gi|254780545|r 233 FEQAKNNS----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR 308 (647)
Q Consensus 233 f~~a~~~~----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR 308 (647)
-+...... .-|+.||+.|.+- .+.-|.||.-+. +...++++|-.|+.++.|-|.+.= |
T Consensus 102 ~~~~~~~p~~g~~KV~IId~Ad~mn--------------~~AaNalLK~LE--EPp~~~~~iL~~~~~~~ll~TI~S--R 163 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN--------------RSACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHH--C
T ss_conf 9996137202795699980667528--------------999999999822--799884899986993658247764--8
Q ss_pred CCCEEEECHHHHHHHHHHHH
Q ss_conf 23141000134788999999
Q gi|254780545|r 309 FDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 309 fd~~i~~~~P~~~~r~~i~~ 328 (647)
=++|.++.|..++-.+-|.
T Consensus 164 -Cq~~~~~~p~~~~~~~~L~ 182 (319)
T PRK08769 164 -CQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred -CEEECCCCCCHHHHHHHHH
T ss_conf -5011189969999999999
No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.7e-06 Score=64.54 Aligned_cols=133 Identities=25% Similarity=0.338 Sum_probs=92.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHHH-----CCHHHHHHHHHHH
Q ss_conf 123331100378742588899997424699-------7---------020585788644420-----3324599999999
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFVG-----VGASRVRDMFEQA 236 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a 236 (647)
.|.|...||+||+|+||+.+|+++|.-.-+ | +-.-+.+||....-- .+-..||+|-+.+
T Consensus 19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~ 98 (328)
T PRK05707 19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFV 98 (328)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 98220464479998679999999999984899999899988889999875899987998426667769799999999998
Q ss_pred HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf 873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r 237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ 312 (647)
Q Consensus 237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~ 312 (647)
... ..=|+.||+.|.+- .+.-|.||--+. +..+++++|=.|+.|+.|-|-++= |-- +
T Consensus 99 ~~~~~~g~~KV~iI~~Ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLE--EPSGQTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred HHCCCCCCCEEEEEEHHHHHC--------------HHHHHHHHHHHH--CCCCCEEEEEEECCHHHCHHHHHH--CCE-E
T ss_conf 317667895799950287738--------------999999999850--789875999860993448258874--141-3
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 10001347889999999
Q gi|254780545|r 313 ITVPNPDIVGREHILMV 329 (647)
Q Consensus 313 i~~~~P~~~~r~~i~~~ 329 (647)
+.++.|+.+.-..-|.-
T Consensus 160 ~~~~~p~~e~~~~~L~~ 176 (328)
T PRK05707 160 LACPLPSNEPSLQWLQQ 176 (328)
T ss_pred EECCCCCHHHHHHHHHH
T ss_conf 34899899999999997
No 176
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.36 E-value=2.5e-06 Score=64.82 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-ECCCHHHHHHH-------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 2333110037874258889999742469970-20585788644-------420332459999999987378012063235
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPF-FTISGSDFVEL-------FVGVGASRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f-~~~~~s~~~~~-------~~g~g~~~vr~lf~~a~~~~p~iifiDeid 250 (647)
.+|||+-|||+.|+|||||--..-..+.++= .-+-=-+|+.. +-| +...+..+-+.-.+. --+++|||+.
T Consensus 59 ~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~-~~dpl~~va~~l~~~-~~lLCfDEFq 136 (361)
T pfam03969 59 QPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQG-GDDPLPIAADRFANE-ARLLCFDEFE 136 (361)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC-CCEEEEEEEE
T ss_conf 99986898899888699999999986775344456678999999999999766-776389999999725-8779976356
Q ss_pred H--HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 6--41445578988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r 251 A--VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 251 a--~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
. || | --.|..|+..+ -..||+++++.|++ |.=|=++.+-|.-++|. .++++
T Consensus 137 V~DIa-----------D--AMIL~rLf~~L----f~~gvvlV~TSN~~----P~~LY~~GLqR~~FlPf------I~ll~ 189 (361)
T pfam03969 137 VDDIG-----------D--AMILGRLFEAL----FARGVSLVATSNTA----PEQLYRNGLNRQRFLPA------IDLLE 189 (361)
T ss_pred ECCHH-----------H--HHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHHHH
T ss_conf 16788-----------8--99999999999----97797899808999----89983687417788999------99999
Q ss_pred HHHCCCCCCCCCCHHH
Q ss_conf 9854887773211024
Q gi|254780545|r 329 VHSRNVPLAPNVILKT 344 (647)
Q Consensus 329 ~~~~~~~~~~~~d~~~ 344 (647)
-|+.-..++.+.|+..
T Consensus 190 ~~~~v~~l~~~~DYR~ 205 (361)
T pfam03969 190 SHFEVVRVDGPVDYRL 205 (361)
T ss_pred HHCEEEEECCCCCCCC
T ss_conf 8678998159878054
No 177
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.35 E-value=1.1e-06 Score=67.37 Aligned_cols=101 Identities=25% Similarity=0.396 Sum_probs=61.9
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCC
Q ss_conf 33311003787425888999974246---9970205857886444203-3245999999998737801206323564144
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~ 255 (647)
-...++|+||||||||.||-|++.++ |.+..+++.+++++.+... ......++++. -..+-++.|||+-. .
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~l~~--~~~~dlLIiDDlG~---~ 120 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGRLARTLQR--LAKADLLILDDIGY---L 120 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEEHHCC---C
T ss_conf 587689989999878999999999999869859999616799999987526749999999--62589788720016---5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 55789886268898899899853032357782999962981
Q gi|254780545|r 256 RGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 256 r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
. ..++..+.+-+++.+-. .+.. ++| +||.|
T Consensus 121 ~------~s~~~~~~lf~li~~Ry---e~~s-tIi-TSN~~ 150 (178)
T pfam01695 121 P------LSQEAAHLLFELISDRY---ERRS-TIL-TSNLP 150 (178)
T ss_pred C------CCHHHHHHHHHHHHHHH---CCCC-EEE-ECCCC
T ss_conf 6------89899999999999997---5688-687-76899
No 178
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.34 E-value=1.6e-07 Score=73.47 Aligned_cols=48 Identities=44% Similarity=0.715 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 22569889852889999999998743356766420123331100378742588899997424
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
..-=|+||.|++++|.-|.=.. -| -..+||.|||||||||||+.+-|=
T Consensus 189 ~~~DL~dv~GQ~~akRAleIAa-----------AG---GHNlll~GPPGsGKTmla~r~~gi 236 (505)
T TIGR00368 189 IDLDLKDVKGQQHAKRALEIAA-----------AG---GHNLLLLGPPGSGKTMLASRLQGI 236 (505)
T ss_pred HHCCCCCCCCHHHCCHHHHHHH-----------HC---CCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 1044322545101102677753-----------13---564376782496268999875105
No 179
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=4.7e-06 Score=62.77 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEC----CC-HHHHHHHHH-HCC--HHHHHHHH
Q ss_conf 99987433567664201233311003787425888999974246997020----58-578864442-033--24599999
Q gi|254780545|r 162 EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFT----IS-GSDFVELFV-GVG--ASRVRDMF 233 (647)
Q Consensus 162 ~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~----~~-~s~~~~~~~-g~g--~~~vr~lf 233 (647)
.|+..|+|.-+- .++|...||+||+|+|||.+|+.+|....++--. .. .++....-+ +.. -.++|++-
T Consensus 5 ~iv~~L~nai~~----~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~~~i 80 (303)
T PRK07132 5 NIIKSLDNLAKQ----NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFLSAI 80 (303)
T ss_pred HHHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 899999999984----9976168867899867999999999997299878887545653230413322200168899999
Q ss_pred HHHHHHC-----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCC
Q ss_conf 9998737-----8012063235641445578988626889889989985303235778299996298100883331-656
Q gi|254780545|r 234 EQAKNNS-----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPG 307 (647)
Q Consensus 234 ~~a~~~~-----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-Rpg 307 (647)
+...... .-|+.|||+|.+. .+..|.||--+. ++..+|+.|-+|+.|+.+-|.++ |.-
T Consensus 81 ~~~~~~~~~~~~~Kv~IIdea~~lt--------------~~A~NaLLKtLE--EPp~~~~fil~t~~~~~il~TI~SRCq 144 (303)
T PRK07132 81 EKFSFSSFVSNQKKILIIKNIEKTS--------------NSSLNALLKTIE--EPSKNTYFLLTTKNINKVIPTIVSRCQ 144 (303)
T ss_pred HHHHHCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHCC--CCCCCEEEEEEECCHHHCCHHHHHCCE
T ss_conf 9997366556870699981655339--------------999999998703--898684899972882438377863665
Q ss_pred CCCCEEEECHHHHHHHHHHH
Q ss_conf 42314100013478899999
Q gi|254780545|r 308 RFDRQITVPNPDIVGREHIL 327 (647)
Q Consensus 308 Rfd~~i~~~~P~~~~r~~i~ 327 (647)
||| +..++.+.-.+.|
T Consensus 145 ~~~----f~~~~~~~i~~~l 160 (303)
T PRK07132 145 VIN----VKEPDQQKILAKL 160 (303)
T ss_pred EEE----CCCCCHHHHHHHH
T ss_conf 663----7889999999999
No 180
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.33 E-value=8.5e-06 Score=60.94 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCC-CCEEECCCCCHHHHHHHHHHHCCC-------CCCEECCCHHH
Q ss_conf 9889852889999999998743--3567664201233-311003787425888999974246-------99702058578
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLC--DPQKFKRLGGRIP-HGVLLVGPPGTGKTLLARAVAGEA-------NVPFFTISGSD 216 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~--~~~~~~~~g~~~p-~g~ll~GppGtGKTlla~a~a~e~-------~~~f~~~~~s~ 216 (647)
=.+..|+.-+|..++++-..|- .-.+-..+....| -.+-|.|.||||||..|.-+|.=. .-..++++-.|
T Consensus 21 ~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trdd 100 (284)
T TIGR02880 21 DRELIGLKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH
T ss_conf 67621641588999999999999999987422104883267751689872489999999999871540036267853001
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 86444203324599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
++..|+|-++-+-+++..+| ...|+||||.--+-+..... |.....+.-||..|. +..+.++||-|- ..
T Consensus 101 lvGqy~GhtaPktke~lk~a---~GGvlfideayyly~P~ner-----dyG~eaieillq~me--n~r~~lvvi~aG-y~ 169 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER-----DYGQEAIEILLQVME--NQRDDLVVILAG-YK 169 (284)
T ss_pred HHHHHHCCCCCHHHHHHHHH---CCCEEEEECHHHHCCCCCCC-----HHHHHHHHHHHHHHH--CCCCCEEEEEEC-CH
T ss_conf 31122125772268999874---28736642203321776410-----223799999999872--365537888717-07
Q ss_pred CCCCHHHC-CCC---CCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCC---C--CHHHHHHHHHCCCHH-HHHHHHHHH
Q ss_conf 00883331-656---4231410001347889999999854887--7732---1--102454412037989-999999998
Q gi|254780545|r 297 DVLDAALL-RPG---RFDRQITVPNPDIVGREHILMVHSRNVP--LAPN---V--ILKTIARGTPGFSGA-DLRNLVNEA 364 (647)
Q Consensus 297 ~~lD~al~-Rpg---Rfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~---~--d~~~la~~t~g~sgA-di~~~~~eA 364 (647)
|.+|.-.- .|| |.-.||.+|--..++-..|-.+.+.... ++.. + ++-.+-+..|-|+-| .+.|.+..+
T Consensus 170 ~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rna~dr~ 249 (284)
T TIGR02880 170 DRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRNALDRA 249 (284)
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 88888751178624677643158887767899999998865412111889999999999863178314678899999889
Q ss_pred HHH
Q ss_conf 764
Q gi|254780545|r 365 ALM 367 (647)
Q Consensus 365 a~~ 367 (647)
.+.
T Consensus 250 rlr 252 (284)
T TIGR02880 250 RLR 252 (284)
T ss_pred HHH
T ss_conf 888
No 181
>PRK06526 transposase; Provisional
Probab=98.32 E-value=1.5e-06 Score=66.34 Aligned_cols=100 Identities=23% Similarity=0.371 Sum_probs=61.4
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHH-CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf 3311003787425888999974246---997020585788644420-332459999999987378012063235641445
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVG-VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR 256 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g-~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r 256 (647)
...++|+||||||||.||-|++.+| |.+..+++.+++++.+.- ....+...++.+ -..+-++.|||+-..--
T Consensus 98 ~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~--l~~~dLLIiDe~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQDELVK--LGRIPLLIVDEVGYIPF-- 173 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEECCCCCCC--
T ss_conf 88789989999868999999999999869967998779999999998855809999998--51368776502136447--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 5789886268898899899853032357782999962981
Q gi|254780545|r 257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
..+ .-+-|+.-++.-..... ++| +||.|
T Consensus 174 -------~~~---~a~~lf~li~~Rye~~S-~Ii-TSn~~ 201 (254)
T PRK06526 174 -------EAE---AANLFFQLVSSRYERAS-LIV-TSNKP 201 (254)
T ss_pred -------CHH---HHHHHHHHHHHHHCCCC-EEE-ECCCC
T ss_conf -------889---99999999999974588-676-65898
No 182
>PRK06921 hypothetical protein; Provisional
Probab=98.30 E-value=6.6e-06 Score=61.73 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=58.7
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCC----CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHH--HHHHC
Q ss_conf 3311003787425888999974246----99702058578864442033245999999998737801206323--56414
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEA----NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI--DAVGR 254 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~----~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDei--da~~~ 254 (647)
-.+++|+|+||+|||.||-|||++. +++.++++-.+++...-.. -....+.++.. +.+| +++||++ +..|.
T Consensus 116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~-~~~~~~~l~~~-~~~d-lLIIDDLfk~~~G~ 192 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM-KKVE-VLFIDDLFKPVNGK 192 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHHHHHHHHHH-HCCC-EEEEECCCCCCCCC
T ss_conf 662799728989889999999999999629719998879999999988-88899999986-3299-99982212234798
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 45578988626889889989985303235778299996298
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
.+. ++ -..+++..-++. .-..+--+|-+||.
T Consensus 193 e~~------te---~~~~~lf~iIN~-Ry~~~kptIiSSNl 223 (265)
T PRK06921 193 PRA------TE---WQIEQTYSVVNY-RYLNHKPILISSEL 223 (265)
T ss_pred CCC------CH---HHHHHHHHHHHH-HHHCCCCEEEECCC
T ss_conf 789------88---999999999999-99769998998689
No 183
>PRK08181 transposase; Validated
Probab=98.29 E-value=1.8e-06 Score=65.86 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCC
Q ss_conf 3311003787425888999974246---9970205857886444203-32459999999987378012063235641445
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHR 256 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r 256 (647)
...|+|.||||||||.||-|++.+| |....+++.+++++.+... .......++.+ -..+-++.|||+-.+-.
T Consensus 106 ~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~--l~~~dLLIiDe~G~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHH--HHCCCEEEEHHCCCCCC--
T ss_conf 87089989999878899999999999879939997899999999997755839999999--74446012201056679--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 5789886268898899899853032357782999962981
Q gi|254780545|r 257 GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 257 ~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
..+..+.+=|++..- .... -++| +||.|
T Consensus 182 -------~~~~~~~lf~lI~~R---ye~~-S~II-TSn~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISAR---YERR-SILI-TANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHH---HCCC-CEEE-ECCCC
T ss_conf -------989999999999998---5788-8899-88999
No 184
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=3.7e-05 Score=56.31 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=74.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC---C-----EECCCHHHHHHHHH-HCC----HHHHHHHHHHHHH----HC
Q ss_conf 123331100378742588899997424699---7-----02058578864442-033----2459999999987----37
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV---P-----FFTISGSDFVELFV-GVG----ASRVRDMFEQAKN----NS 240 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~---~-----f~~~~~s~~~~~~~-g~g----~~~vr~lf~~a~~----~~ 240 (647)
.|+|...||+||+|+||+.+|+++|...-+ | +-.-+.+||....- |.| -..+|++-+.... ..
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~ 95 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQIWIHPYEAN 95 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99660687689998659999999999985789961688987468998599615777887867899999999641864688
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCC
Q ss_conf 8012063235641445578988626889889989985303235778299996298100883331-65642
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRF 309 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRf 309 (647)
-=|+.||+.|.+- .+.-|.||--+. +...++++|-.|+.++.|-|.++ |--||
T Consensus 96 ~KV~IId~Ad~Mn--------------~~AaNALLKtLE--EPP~~tvfILit~~~~~lLpTI~SRCQ~I 149 (290)
T PRK05917 96 YKIYIIHEADRMT--------------LDAISAFLKVLE--DPPKHSVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf 2699975677638--------------999999999734--79878599998699254823776335116
No 185
>KOG0991 consensus
Probab=98.26 E-value=2.6e-05 Score=57.37 Aligned_cols=235 Identities=25% Similarity=0.369 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE 219 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~ 219 (647)
+.++||.|.++..+.|+-+.. -| .+| .+++.||||||||.-+.++|.+.=- ..+...+|+=.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------~g-nmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR- 90 (333)
T KOG0991 24 SVLQDIVGNEDTVERLSVIAK----------EG-NMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER- 90 (333)
T ss_pred HHHHHHHCCHHHHHHHHHHHH----------CC-CCC-CEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-
T ss_conf 299882177989999999997----------28-998-66752799986164899999998380666576320576554-
Q ss_pred HHHHCCHHHHH---HHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 44203324599---99999987378----012063235641445578988626889889989985303235778299996
Q gi|254780545|r 220 LFVGVGASRVR---DMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 220 ~~~g~g~~~vr---~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
|-.-|| ..|.+-|-.-| -||.+||.|+.- .|.. |.|- --|.=.++... +.+ |
T Consensus 91 -----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-------~gAQ----QAlR---RtMEiyS~ttR-Fal-a 149 (333)
T KOG0991 91 -----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-------AGAQ----QALR---RTMEIYSNTTR-FAL-A 149 (333)
T ss_pred -----CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH-------HHHH----HHHH---HHHHHHCCCCH-HHH-H
T ss_conf -----608999999999872034899852489961522020-------6899----9999---99999706320-000-0
Q ss_pred CCCCC-CCCH-----HHCCCCCCCCEEEECHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 29810-0883-----33165642314100013478899999998-54887773211024544120379899999999987
Q gi|254780545|r 293 TNRPD-VLDA-----ALLRPGRFDRQITVPNPDIVGREHILMVH-SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA 365 (647)
Q Consensus 293 Tn~~~-~lD~-----al~RpgRfd~~i~~~~P~~~~r~~i~~~~-~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa 365 (647)
.|..+ ++.| |+|| |+|. -|..--...+.+. ..+.+..+| -++.+.-...| |...-+|.
T Consensus 150 CN~s~KIiEPIQSRCAiLR---yskl-----sd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn-- 214 (333)
T KOG0991 150 CNQSEKIIEPIQSRCAILR---YSKL-----SDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN-- 214 (333)
T ss_pred HCCHHHHHHHHHHHHHHHH---HCCC-----CHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHCCC----HHHHHHHH--
T ss_conf 1542132226773457653---2226-----78999999999998707887711-47785544166----19999999--
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 645532024210456899975013686556766686677899---9999999999985058773234322014
Q gi|254780545|r 366 LMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKIT---AYHEAGHAVVACHVPKADPLHKATIIPR 435 (647)
Q Consensus 366 ~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~v---AyHEAGHAlva~~l~~~~~v~kVTIipR 435 (647)
+.+.-.+-..|+.+.+..-.| -| +..+-++-.+.. -+|||-.-+-..+-.+++|..-||-+-|
T Consensus 215 LQst~~g~g~Vn~enVfKv~d----~P---hP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991 215 LQSTVNGFGLVNQENVFKVCD----EP---HPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred HHHHHCCCCCCCHHHHHHCCC----CC---CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 998740545246323100069----99---8599999999998612999999999999748988999999999
No 186
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.23 E-value=1.3e-05 Score=59.56 Aligned_cols=165 Identities=24% Similarity=0.312 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCH
Q ss_conf 89852889999999998743356766420123--3311003787425888999974246997020585788644420332
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGA 226 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~ 226 (647)
.|-|++.+|.-+.- ..+-...+...-|.+. --.+||.|-|||||+-|-|.++.=+--..| ++|.. +--+|.++
T Consensus 204 ~I~G~~~vK~allL--~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvy-tsG~g--sS~aGLTa 278 (509)
T smart00350 204 SIYGHEDIKKAILL--LLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVY-TTGKG--SSAVGLTA 278 (509)
T ss_pred CCCCCHHHHHHHHH--HHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEE-EECCC--CCCCCCEE
T ss_conf 32387889999999--970887664898850415414998469982362999999985886068-73444--55577068
Q ss_pred HHHHHHHH-----HHHH---HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CCCE
Q ss_conf 45999999-----9987---37801206323564144557898862688988998998530---------3235--7782
Q gi|254780545|r 227 SRVRDMFE-----QAKN---NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SEGV 287 (647)
Q Consensus 227 ~~vr~lf~-----~a~~---~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~~v 287 (647)
+-+|+-.. +|-+ .---|+.|||+|-+.. + -.+.|+.-|. |+.. +...
T Consensus 279 av~rd~~~ge~~leaGALVlAD~GiccIDEfdKm~~----------~----dr~alhEaMEQQtisiaKaGi~~tL~aR~ 344 (509)
T smart00350 279 AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD----------S----DRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred EEEECCCCCCEEECCCCEECCCCCEEEEEEHHHCCH----------H----HHHHHHHHHHHCEEEEECCCEEEEEECCC
T ss_conf 999817888378725641205675478521320787----------7----89999999974877874375179985573
Q ss_pred EEEEECCCC-------------CCCCHHHCCCCCCCCEEEE-CHHHHHHH----HHHHHHHHCCC
Q ss_conf 999962981-------------0088333165642314100-01347889----99999985488
Q gi|254780545|r 288 ILIAATNRP-------------DVLDAALLRPGRFDRQITV-PNPDIVGR----EHILMVHSRNV 334 (647)
Q Consensus 288 ~vi~aTn~~-------------~~lD~al~RpgRfd~~i~~-~~P~~~~r----~~i~~~~~~~~ 334 (647)
-|+||+|-. =.|.++||= |||-.+.+ +.||.+.= ..|++.|....
T Consensus 345 sVlAAaNP~~g~yd~~~s~~eni~l~~~LLS--RFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~ 407 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSH 407 (509)
T ss_pred EEEEEECCCCCCCCCCCCHHHHCCCCHHHHH--HCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 5998655655637888999994689803541--02389996158987889999999999874158
No 187
>KOG2383 consensus
Probab=98.20 E-value=9.4e-06 Score=60.63 Aligned_cols=175 Identities=22% Similarity=0.332 Sum_probs=95.5
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC----CHHHHHHHHHHCCHHHHHHHHHHH-----------------
Q ss_conf 12333110037874258889999742469970205----857886444203324599999999-----------------
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI----SGSDFVELFVGVGASRVRDMFEQA----------------- 236 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~----~~s~~~~~~~g~g~~~vr~lf~~a----------------- 236 (647)
-.+|||+.|||--|||||||---.=+.+-- +-- ---+|+- .| -+|++++-.+-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~--i~rkqRvHFh~fM~-~V---H~r~H~~k~~~~~~~~~~a~~~~~Dpl~ 184 (467)
T KOG2383 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP--IWRKQRVHFHGFML-SV---HKRMHELKQEQGAEKPGYAKSWEIDPLP 184 (467)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHH-HH---HHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 899846899635675446778877632784--01344403999999-99---9999999984165465533346678617
Q ss_pred ---HH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEEECCCC-CCCCHHHCCCCCC
Q ss_conf ---87--37801206323564144557898862688-98899899853032357782999962981-0088333165642
Q gi|254780545|r 237 ---KN--NSPCIVFVDEIDAVGRHRGIGLGGGNDER-EQTLNQLLVEMDGFESSEGVILIAATNRP-DVLDAALLRPGRF 309 (647)
Q Consensus 237 ---~~--~~p~iifiDeida~~~~r~~~~~~~~~e~-~~~ln~ll~~mdg~~~~~~v~vi~aTn~~-~~lD~al~RpgRf 309 (647)
.+ .--|++-+||+... |-- --+|+.|.+.+ | +.|||++|+.||+ +.|= -+-+
T Consensus 185 ~vA~eIa~ea~lLCFDEfQVT------------DVADAmiL~rLf~~L--f--~~GvVlvATSNR~P~dLY-----knGl 243 (467)
T KOG2383 185 VVADEIAEEAILLCFDEFQVT------------DVADAMILKRLFEHL--F--KNGVVLVATSNRAPEDLY-----KNGL 243 (467)
T ss_pred HHHHHHHHHCEEEEECHHHHH------------HHHHHHHHHHHHHHH--H--HCCEEEEEECCCCHHHHH-----HCCH
T ss_conf 899998550303431201013------------688999999999999--7--387599982789858886-----2430
Q ss_pred CCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-C--CCH-HHHHHHHHHHHH-HHHHHHCCCCCHHHHHHH
Q ss_conf 31410001347889999999854887773211024544120-3--798-999999999876-455320242104568999
Q gi|254780545|r 310 DRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTP-G--FSG-ADLRNLVNEAAL-MAARRNRRLVTMQEFEDA 384 (647)
Q Consensus 310 d~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~-g--~sg-Adi~~~~~eAa~-~a~r~~~~~i~~~dl~~A 384 (647)
.|..++|. .++|+.+++-..++..+|+...++... + |.+ +|.+.++++--- +++.++ . ...+
T Consensus 244 QR~~F~Pf------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~-d------~~~~ 310 (467)
T KOG2383 244 QRENFIPF------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFKLLAADQN-D------GTRQ 310 (467)
T ss_pred HHHHHHHH------HHHHHHHHEEEECCCCCCHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCC-C------CCCC
T ss_conf 25530068------999987636886588533533057777536724800278999999999743588-8------7777
Q ss_pred HHHCCCCC
Q ss_conf 75013686
Q gi|254780545|r 385 KDKILMGA 392 (647)
Q Consensus 385 ~~rv~~G~ 392 (647)
..-+++|.
T Consensus 311 ~~l~v~GR 318 (467)
T KOG2383 311 RTLVVFGR 318 (467)
T ss_pred CCEEEECC
T ss_conf 42267522
No 188
>KOG0990 consensus
Probab=98.20 E-value=4.1e-05 Score=55.98 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 11242256988985288999999999874335676642012333110037874258889999742469970205857886
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
.+...--+.+||.+.+++...+.+. ...+ +.| ..|+|||||||||-.-.|.|...-.| .-..|-..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~----------~~~~-~lP-h~L~YgPPGtGktsti~a~a~~ly~~--~~~~~m~l 97 (360)
T KOG0990 32 VEKYRPPFLGIVIKQEPIWSTENRY----------SGMP-GLP-HLLFYGPPGTGKTSTILANARDFYSP--HPTTSMLL 97 (360)
T ss_pred CCCCCCCHHHHHHCCCCHHHHHHHH----------CCCC-CCC-CCCCCCCCCCCCCCCHHHHHHHHCCC--CCCHHHHH
T ss_conf 6688982256673377212478886----------2688-897-53434899889987366656650589--98246999
Q ss_pred HHHH----HCCHHHHH-HHHHHHHH-------HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4442----03324599-99999987-------378012063235641445578988626889889989985303235778
Q gi|254780545|r 219 ELFV----GVGASRVR-DMFEQAKN-------NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG 286 (647)
Q Consensus 219 ~~~~----g~g~~~vr-~lf~~a~~-------~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~ 286 (647)
|+-. |.+.-|.+ .+|+.++. .++-.|.+||.||.. |+ .-|+|=-...-+..+..
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--~~------------AQnALRRviek~t~n~r 163 (360)
T KOG0990 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--RD------------AQNALRRVIEKYTANTR 163 (360)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHH--HH------------HHHHHHHHHHHHCCCEE
T ss_conf 86436766886147888987764164000246761588733413766--98------------99999999987133237
Q ss_pred EEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 2999962981008833316564231410001347889999999854
Q gi|254780545|r 287 VILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 287 v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
..+|+ |.|..+-||++- ||-|.=+=+++ ...-..++.++..
T Consensus 164 F~ii~--n~~~ki~pa~qs--Rctrfrf~pl~-~~~~~~r~shi~e 204 (360)
T KOG0990 164 FATIS--NPPQKIHPAQQS--RCTRFRFAPLT-MAQQTERQSHIRE 204 (360)
T ss_pred EEEEC--CCHHHCCCHHHC--CCCCCCCCCCC-HHHHHHHHHHHHH
T ss_conf 99861--676446814641--04457878887-5442467888871
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.5e-05 Score=59.10 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=92.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC---------------EECCCHHHHHHHHH---H--CCHHHHHHHHHHH
Q ss_conf 01233311003787425888999974246997---------------02058578864442---0--3324599999999
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVP---------------FFTISGSDFVELFV---G--VGASRVRDMFEQA 236 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~---------------f~~~~~s~~~~~~~---g--~g~~~vr~lf~~a 236 (647)
-.|.|.+.||.||+|+||+.||+++|...-+. |-.-+.+||....- | .|-..||++-+.+
T Consensus 21 ~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~ 100 (319)
T PRK06090 21 AERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 69963067667999857999999999998089999998877877999875899982366123356768799999999997
Q ss_pred HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf 873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r 237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ 312 (647)
Q Consensus 237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~ 312 (647)
... ..-|++||+.|.+- +..-|.||--+. +...++++|-.|++|+.|-|.++- |- .+
T Consensus 101 ~~~~~~g~~KV~iI~~ae~m~--------------~~AaNALLKtLE--EPp~~t~fiL~t~~~~~ll~TI~S--RC-q~ 161 (319)
T PRK06090 101 QESSQLGGYRLFVIEPADAMN--------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQ 161 (319)
T ss_pred HHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCCHHH--CC-CC
T ss_conf 545210693699981444349--------------999999999842--899883899876851208641876--14-45
Q ss_pred EEECHHHHHHHHHHHHH
Q ss_conf 10001347889999999
Q gi|254780545|r 313 ITVPNPDIVGREHILMV 329 (647)
Q Consensus 313 i~~~~P~~~~r~~i~~~ 329 (647)
+.++.|+.+.-.+=|+-
T Consensus 162 ~~l~~p~~~~~~~WL~~ 178 (319)
T PRK06090 162 WVVTPPSTDQAMQWLKG 178 (319)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 02899599999999988
No 190
>PRK12377 putative replication protein; Provisional
Probab=98.18 E-value=1.6e-06 Score=66.13 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=72.2
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 2256988985-28899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 143 GSVTFKDVAG-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 143 ~~v~f~dv~g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
-+-+|++.-- .|..+..+.....|.. .| ..-..+++|+||||||||.||-|++.++ |...++++.++++
T Consensus 69 ~~~~f~ny~~~~~~~~~a~~~a~~~~~---~F----~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv 141 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIAD---EL----MTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHH---HH----HCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 438634564578789999999999999---87----31886089989999878899999999999879969998899999
Q ss_pred HHHHHCCHH-HH-HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 444203324-59-9999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 219 ELFVGVGAS-RV-RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 219 ~~~~g~g~~-~v-r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
......-.. +. ..+.+. -..+-.+.|||+-.. +.+ +.....++|++..- ......+++ +||.+
T Consensus 142 ~~L~~a~~~g~~~~k~l~~--l~~~dLLIIDElG~~---~~s------~~~~~llfqlI~~R--y~~~ks~Ii--TTNL~ 206 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ---RET------KNEQVVLNQIIDRR--TASMRSVGM--LTNLN 206 (248)
T ss_pred HHHHHHHHCCCCHHHHHHH--HHCCCEEEEHHCCCC---CCC------HHHHHHHHHHHHHH--HHCCCCEEE--ECCCC
T ss_conf 9999999848509999999--733898986000578---898------67999999999999--855798689--75899
No 191
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.18 E-value=6.5e-05 Score=54.57 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH---------
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857---------
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS--------- 215 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s--------- 215 (647)
.+-+|+|= -|..+.||-.||++ .+ .|-+..+=.||.||||||||-..+.+|.|.|.-+..-..+
T Consensus 16 ~~l~ELAV---HKKKV~eV~~WL~~--~~--~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~ 88 (490)
T pfam03215 16 RRRDELAI---HKKKIAEVDHWLKA--VF--LESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNE 88 (490)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHH--HH--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCH
T ss_conf 87899855---35439999999999--85--4777731899879899889999999999759689981486545677502
Q ss_pred ----HHHHHHHHCCHHHHHHHHH----HHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----8864442033245999999----99873--------7801206323564144557898862688988998998530
Q gi|254780545|r 216 ----DFVELFVGVGASRVRDMFE----QAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 216 ----~~~~~~~g~g~~~vr~lf~----~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
+|.+.+.--+.+.. +-|+ .|.+. ..-||+|||+...+. |+. .+.-+.|+..+.
T Consensus 89 ~q~~d~~g~~~~~~~S~~-~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d~---------~~fr~~L~~~L~ 157 (490)
T pfam03215 89 CQKPDFRGDCIVNSLSQM-EQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SDA---------EKFREVIREVLQ 157 (490)
T ss_pred HHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CCH---------HHHHHHHHHHHH
T ss_conf 210121234576666377-776788762233565445788735999965887442-366---------999999999997
Q ss_pred CCCCCCCEEEEEE-C------CCCC--------CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCC--CC
Q ss_conf 3235778299996-2------9810--------088333165642314100013478899999998548--87773--21
Q gi|254780545|r 280 GFESSEGVILIAA-T------NRPD--------VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAP--NV 340 (647)
Q Consensus 280 g~~~~~~v~vi~a-T------n~~~--------~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~--~~ 340 (647)
. .....+|+|-+ | |..+ .+.|-|+.--+. .+|.+......--.+-|..-+++ .+..+ +.
T Consensus 158 s-~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i-~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~ 235 (490)
T pfam03215 158 S-IWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI-DTITFNPIAPTFMKKALVRISVQEGKLKSPKSDS 235 (490)
T ss_pred H-CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 0-8999879999704666677643323210786359888708896-3698688878899999999999857655675203
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10245441203798999999999876455320
Q gi|254780545|r 341 ILKTIARGTPGFSGADLRNLVNEAALMAARRN 372 (647)
Q Consensus 341 d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~ 372 (647)
.++.||+. |+-||.+.+|---..+.+.+
T Consensus 236 ~le~Ia~~----S~GDIRsAInsLQF~~~~~~ 263 (490)
T pfam03215 236 KLEVICQE----AGGDLRSAINSLQFSSSGPN 263 (490)
T ss_pred HHHHHHHH----CCCCHHHHHHHHHHHCCCCC
T ss_conf 89999986----48729999999998626898
No 192
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.17 E-value=8.4e-05 Score=53.73 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-----EECCCHHHHH---HHHH------
Q ss_conf 9999999987433567664201233311003787425888999974246997-----0205857886---4442------
Q gi|254780545|r 157 KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-----FFTISGSDFV---ELFV------ 222 (647)
Q Consensus 157 k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-----f~~~~~s~~~---~~~~------ 222 (647)
.+||.++...+++ | ...-+++|||-++|||-|.+.++.+...+ |+........ ..+.
T Consensus 5 e~EL~~L~~~~~~-------~--~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 75 (223)
T pfam01637 5 EKELKELEEWAER-------G--TYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLA 75 (223)
T ss_pred HHHHHHHHHHHHC-------C--CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999966-------9--971899986887879999999998633468528999514443799999888889999
Q ss_pred -------H-CC-------HHHHHHHHHHHHH-HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -------0-33-------2459999999987-378012063235641445578988626889889989985303235778
Q gi|254780545|r 223 -------G-VG-------ASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG 286 (647)
Q Consensus 223 -------g-~g-------~~~vr~lf~~a~~-~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~ 286 (647)
+ .+ ...+.++|+...+ ..+|||.|||+.-+....+. ...++.|..-+|-......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~---------~~~~~~l~~~~d~~~~~~~ 146 (223)
T pfam01637 76 EALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGA---------ESYVKLLLNLIDYPPKEYH 146 (223)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCC---------HHHHHHHHHHHHHHHCCCC
T ss_conf 9987651233222112078899999999985599659997016776402443---------0599999999997524577
Q ss_pred EEEEEECCCCCCCCHHHCCC-----CCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCC
Q ss_conf 29999629810088333165-----642314100013478899999998548--87773211024544120379
Q gi|254780545|r 287 VILIAATNRPDVLDAALLRP-----GRFDRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFS 353 (647)
Q Consensus 287 v~vi~aTn~~~~lD~al~Rp-----gRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~s 353 (647)
+.+|-+.....++.. ++.. ||++ .|.+.+=+...-.+.++.+.+. .+.+++ ++..+-..|-|.-
T Consensus 147 ~~~I~~GS~~~~m~~-~~~~~~plygR~~-~i~l~p~~~~~~~efl~~~f~e~~~~~~~~-~~~~iy~~~gG~P 217 (223)
T pfam01637 147 LIVVLCGSSEGLTIE-LLDYKSPLYGRHR-WALLKPFDFETAWNFLREGFEELYEPGPKE-EFEEVWRLLGGNP 217 (223)
T ss_pred EEEEEECCHHHHHHH-HHCCCCCCCCCCC-EEEECCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCHH
T ss_conf 589997271999999-8620565357502-277268998999999999999847899989-9999999969838
No 193
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.15 E-value=3.5e-06 Score=63.73 Aligned_cols=120 Identities=34% Similarity=0.480 Sum_probs=71.0
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHHH-----HHHHHC------CHHH-HHHHHHHHHHHCCH
Q ss_conf 123331100378742588899997424---69970205857886-----444203------3245-99999999873780
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFV-----ELFVGV------GASR-VRDMFEQAKNNSPC 242 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~~-----~~~~g~------g~~~-vr~lf~~a~~~~p~ 242 (647)
+..+.-||+.|++||||+++|++|-.. ++-||+.++++.+- +...|. |+.. -.-+|++| .-.
T Consensus 19 a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~le~A---~gG 95 (168)
T pfam00158 19 APTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLFELA---DGG 95 (168)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC---CCC
T ss_conf 58899889989998888999999998524356883125678998779999875876676689875789964226---998
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---C----CCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf 1206323564144557898862688988998998530323---5----77829999629810088333165642314100
Q gi|254780545|r 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE---S----SEGVILIAATNRPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~---~----~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~ 315 (647)
.+||||||.+-. +-...|-++|.+- -|. . .-+|=+|++|+.. | ..+...|+|-+-.|.
T Consensus 96 TL~LdeI~~L~~-----------~~Q~~Ll~~L~~~-~~~~~g~~~~~~~~vRiIast~~~--L-~~~v~~G~Fr~DLyy 160 (168)
T pfam00158 96 TLFLDEIGELPL-----------ELQAKLLRVLQEG-EFERVGGTKPIKVDVRIIAATNRD--L-EEAVAEGRFREDLYY 160 (168)
T ss_pred EEECCCHHHCCH-----------HHHHHHHHHHHCC-EEEECCCCCEEEEEEEEEEECCCC--H-HHHHHCCCCHHHHHH
T ss_conf 788024413999-----------9999999998579-699779984588854999965988--9-999883996399888
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=8.9e-06 Score=60.78 Aligned_cols=132 Identities=26% Similarity=0.388 Sum_probs=86.4
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC--------C---------EECCCHHHHHHHHH-------H-----CCHHH
Q ss_conf 123331100378742588899997424699--------7---------02058578864442-------0-----33245
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV--------P---------FFTISGSDFVELFV-------G-----VGASR 228 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~--------~---------f~~~~~s~~~~~~~-------g-----~g~~~ 228 (647)
-++|...||+||.|+||+.+|+++|...-+ | |-.-+.+||....- | .+-..
T Consensus 18 ~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idq 97 (325)
T PRK08699 18 ERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDA 97 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 45011797579999789999999999982899988899898888899986599999688513445300166556676999
Q ss_pred HHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC
Q ss_conf 99999999873----78012063235641445578988626889889989985303235778299996298100883331
Q gi|254780545|r 229 VRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL 304 (647)
Q Consensus 229 vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~ 304 (647)
||++-+.+... .-=|+.||+.|.+ ..+.-|.||.-+. +...++++|=.|+.|+.|=|-++
T Consensus 98 iR~l~~~~~~~~~~~~~kV~ii~~ae~m--------------n~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM--------------NVQAANSLLKVLE--EPPPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHH--------------CHHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHH
T ss_conf 9999999710865689469998577775--------------8999999999841--78888489998798464623398
Q ss_pred CCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 656423141000134788999999
Q gi|254780545|r 305 RPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 305 RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
- |- +++.++.|+.+.-.+-|+
T Consensus 162 S--Rc-~~~~~~~p~~~~~~~~L~ 182 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred H--CC-CCCCCCCCCHHHHHHHHH
T ss_conf 6--45-421089959999999999
No 195
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=1.9e-05 Score=58.46 Aligned_cols=136 Identities=25% Similarity=0.339 Sum_probs=82.6
Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--------CE---------ECCCHHHHHHHHH-----H--------
Q ss_conf 6420123331100378742588899997424699--------70---------2058578864442-----0--------
Q gi|254780545|r 174 KRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--------PF---------FTISGSDFVELFV-----G-------- 223 (647)
Q Consensus 174 ~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--------~f---------~~~~~s~~~~~~~-----g-------- 223 (647)
.....++|...||+||.|+||..+|.++|.-.-+ |. -.-+.+||...+= +
T Consensus 14 ~~~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~ 93 (342)
T PRK06964 14 QALRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDA 93 (342)
T ss_pred HHCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHH
T ss_conf 98068713057657999867999999999998389999888978677778888627999745534002102233321001
Q ss_pred ------------------CCHHHHHHHHHHHHHHC----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ------------------33245999999998737----80120632356414455789886268898899899853032
Q gi|254780545|r 224 ------------------VGASRVRDMFEQAKNNS----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF 281 (647)
Q Consensus 224 ------------------~g~~~vr~lf~~a~~~~----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~ 281 (647)
..-..||+|-+.....+ --|+.||..|.+ ..+.-|.||--+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~m--------------n~~aaNalLK~LE-- 157 (342)
T PRK06964 94 KAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEAL--------------NVAAANALLKTLE-- 157 (342)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH--------------CHHHHHHHHHHHC--
T ss_conf 011122210123565564549999999999700754588449998277873--------------8999999999723--
Q ss_pred CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 35778299996298100883331656423141000134788999999
Q gi|254780545|r 282 ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 282 ~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
+...++++|=.|++|+.|=|-++= |- .++.+++|+.+.-...|+
T Consensus 158 EPp~~~~~iL~~~~~~~llpTI~S--Rc-q~~~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 158 EPPPGVVFLLVSARIDRLLPTILS--RC-RQWPMTVPAPEAAAAWLA 201 (342)
T ss_pred CCCCCEEEEEEECCHHHCCHHHHH--CC-EEECCCCCCHHHHHHHHH
T ss_conf 798784899986992548368876--76-430289959999999998
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2.4e-05 Score=57.66 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=92.5
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------C---------EECCCHHHHHHHHH---H--CCHHHHHHHHHHH
Q ss_conf 123331100378742588899997424699-------7---------02058578864442---0--3324599999999
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV-------P---------FFTISGSDFVELFV---G--VGASRVRDMFEQA 236 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~---------f~~~~~s~~~~~~~---g--~g~~~vr~lf~~a 236 (647)
.|.|.+.||.||+|+||..+|+++|.-.-+ | +-+-+.+|+....- | .+-..||++=+.+
T Consensus 21 ~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98104675479999889999999999981899999999999978999866899984775342234559999999999998
Q ss_pred HHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCE
Q ss_conf 873----7801206323564144557898862688988998998530323577829999629810088333165642314
Q gi|254780545|r 237 KNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQ 312 (647)
Q Consensus 237 ~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~ 312 (647)
... .-=|++||+.|.+- .+.-|.||--+. +...++++|=.|+.|+.|-|-++= |- ++
T Consensus 101 ~~~~~~g~~kV~iI~~Ae~mn--------------~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--RC-q~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPEKTWFFLACREPARLLATLRS--RC-RL 161 (334)
T ss_pred HHCCCCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEECCCHHHCCCHHHH--HC-CC
T ss_conf 436656994799976677759--------------999999998612--799884999866985657238875--23-04
Q ss_pred EEECHHHHHHHHHHHHHH
Q ss_conf 100013478899999998
Q gi|254780545|r 313 ITVPNPDIVGREHILMVH 330 (647)
Q Consensus 313 i~~~~P~~~~r~~i~~~~ 330 (647)
+.+..|+.+.-.+-|.-.
T Consensus 162 ~~~~~~~~~~~~~wL~~~ 179 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE 179 (334)
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 158997999999999873
No 197
>KOG2227 consensus
Probab=98.08 E-value=0.00023 Score=50.64 Aligned_cols=180 Identities=22% Similarity=0.222 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CC--EECCC--------------HHHHH
Q ss_conf 9999999874335676642012333110037874258889999742469---97--02058--------------57886
Q gi|254780545|r 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VP--FFTIS--------------GSDFV 218 (647)
Q Consensus 158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~--f~~~~--------------~s~~~ 218 (647)
.|+..+-.|++.+ +-.+.+.-+-+.|-||||||.+-.-+--... .. -.++. .++++
T Consensus 157 ~e~~~v~~F~~~h-----le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~ 231 (529)
T KOG2227 157 LEMDIVREFFSLH-----LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLL 231 (529)
T ss_pred HHHHHHHHHHHHH-----HHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8899999999854-----31266764575179986548899999874034316651699851235425889999988898
Q ss_pred HHHHHCCHH-HHHHHHHHH-HHHC-CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 444203324-599999999-8737-8012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 219 ELFVGVGAS-RVRDMFEQA-KNNS-PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 219 ~~~~g~g~~-~vr~lf~~a-~~~~-p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
.--+|-|.- .....|++- .+.+ |-++..||+|-++.++ .. +|-. |-|++- -.+...+.||-.|-
T Consensus 232 q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-~~----------vLy~-lFewp~-lp~sr~iLiGiANs 298 (529)
T KOG2227 232 QDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-QT----------VLYT-LFEWPK-LPNSRIILIGIANS 298 (529)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCC-CC----------EEEE-EHHCCC-CCCCEEEEEEEHHH
T ss_conf 87428950478999999987525633898721256776046-53----------1432-100136-77660566640013
Q ss_pred CCCCCHHHCCC----CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHCCCHH
Q ss_conf 10088333165----6423141000134788999999985488777321--102454412037989
Q gi|254780545|r 296 PDVLDAALLRP----GRFDRQITVPNPDIVGREHILMVHSRNVPLAPNV--ILKTIARGTPGFSGA 355 (647)
Q Consensus 296 ~~~lD~al~Rp----gRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~--d~~~la~~t~g~sgA 355 (647)
.|.-|-.|.|= +---+.+.|++=+.+.-.+||+--+...+..... -++-.|+...|.||-
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 557777766654025788746655687889999999999740544333038999999986257612
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.03 E-value=8.4e-07 Score=68.20 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=77.1
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHH---HHHHHCCHHHHHH--HHHHHHH-HCC--HHEEH
Q ss_conf 201233311003787425888999974246-9970205857886---4442033245999--9999987-378--01206
Q gi|254780545|r 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFV---ELFVGVGASRVRD--MFEQAKN-NSP--CIVFV 246 (647)
Q Consensus 176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~---~~~~g~g~~~vr~--lf~~a~~-~~p--~iifi 246 (647)
+++-.-..++|+|||||+|+++|+.++... +..||.---+-|- |+|.-+.-+.+|+ -|.+.-+ .-| .|+|+
T Consensus 34 LaalagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP~A~iaFL 113 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFL 113 (498)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCCCCEEEHH
T ss_conf 99972894698889951388999999998557408999987469888853833299871178489722675886613157
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC-C-----EEEEEECCC-CC---CCCHHHCCCCCCCCEEE
Q ss_conf 3235641445578988626889889989985303--23577-8-----299996298-10---08833316564231410
Q gi|254780545|r 247 DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE-G-----VILIAATNR-PD---VLDAALLRPGRFDRQIT 314 (647)
Q Consensus 247 Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~-~-----v~vi~aTn~-~~---~lD~al~RpgRfd~~i~ 314 (647)
|||=- - | ..+||.||+-+.- |.+.. . ..+|||+|- |+ .| .||.- ||=-++.
T Consensus 114 DEIfK----a-------n---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~~~L-~AlyD--RfL~R~~ 176 (498)
T PRK13531 114 DEIWK----A-------G---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEADSSL-EALYD--RMLIRLW 176 (498)
T ss_pred HHHHH----C-------C---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCCCCH-HHHHH--HHHHHEE
T ss_conf 87861----4-------8---89999999986464034798313044688643046799998407-88887--6441022
Q ss_pred ECHHHH
Q ss_conf 001347
Q gi|254780545|r 315 VPNPDI 320 (647)
Q Consensus 315 ~~~P~~ 320 (647)
|+.-..
T Consensus 177 v~~v~~ 182 (498)
T PRK13531 177 LDKVQD 182 (498)
T ss_pred CCCCCC
T ss_conf 313167
No 199
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.01 E-value=1.7e-05 Score=58.79 Aligned_cols=197 Identities=29% Similarity=0.428 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH
Q ss_conf 2422569889852889999999998743356766420123331100378742588899997424---6997020585788
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF 217 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~ 217 (647)
..+...+..+.|.-.+-..+.+.|+.. ++-.--||+.|..||||-++||||-.. .+-||+++.++.+
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred CCHHCCCCCCCCCCHHHHHHHHHHHHH----------HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 431024456230699999999999987----------2689807984588853899999998737555798666312225
Q ss_pred HH------HHHHC-----CHHHH-HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHH--HHCCCC
Q ss_conf 64------44203-----32459-99999998737801206323564144557898862688988-998998--530323
Q gi|254780545|r 218 VE------LFVGV-----GASRV-RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLV--EMDGFE 282 (647)
Q Consensus 218 ~~------~~~g~-----g~~~v-r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~--~mdg~~ 282 (647)
-| .|.-+ ||-+- +--|+.|- .--+|+|||--+-.. -|. |---|. |+....
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~------------lQaKLLRvLQegEieRvG 350 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA------------LQAKLLRVLQEGEIERVG 350 (550)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHCCCCCEEECC---CCEEECHHHCCCCHH------------HHHHHHHHHHHCCEEECC
T ss_conf 37888888745332233351014676356557---975760220367877------------889999998636525347
Q ss_pred CCC----CEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH--HH-HHHCCC---------CCCC
Q ss_conf 577----82999962981008833316564231-------4100013478899-99--99-985488---------7773
Q gi|254780545|r 283 SSE----GVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI--LM-VHSRNV---------PLAP 338 (647)
Q Consensus 283 ~~~----~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i--~~-~~~~~~---------~~~~ 338 (647)
++. .|=|||||||- |- -..|-|+|-- .+-+.+|-..+|. +| |- +++++. .+++
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~-~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LE-EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCCEEEEEEEEEECCCHH--HH-HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 996367778998213530--99-998749515545321020013789834588667999999999998863976403398
Q ss_pred CCCHHHHHHHHHCCCH--HHHHHHHHHHHHHH
Q ss_conf 2110245441203798--99999999987645
Q gi|254780545|r 339 NVILKTIARGTPGFSG--ADLRNLVNEAALMA 368 (647)
Q Consensus 339 ~~d~~~la~~t~g~sg--Adi~~~~~eAa~~a 368 (647)
+ -++.|-.+ +|-| -+|+|++..|+++|
T Consensus 428 ~-Al~~L~~y--~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 E-ALELLSSY--EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred H-HHHHHHCC--CCCCCHHHHHHHHHHHHHHC
T ss_conf 9-99999739--99971999998999999970
No 200
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.97 E-value=4.5e-05 Score=55.73 Aligned_cols=150 Identities=29% Similarity=0.430 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH----H
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246---99702058578----8
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD----F 217 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~----~ 217 (647)
..+.++.|...+-+++.+.+. +. +...--||+.|++||||-+.|+|+-... +-||+.+++.. .
T Consensus 138 ~~~~~liG~S~am~~l~~~i~------kv----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIA------KV----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred CCCCCCCCCCHHHHHHHHHHH------HH----HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 556775206999999999999------98----47799789977898758999999986074458992563346489888
Q ss_pred HH-HHHH------CCHHH-HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCC
Q ss_conf 64-4420------33245-99999999873780120632356414455789886268898899899853-----032357
Q gi|254780545|r 218 VE-LFVG------VGASR-VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM-----DGFESS 284 (647)
Q Consensus 218 ~~-~~~g------~g~~~-vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m-----dg~~~~ 284 (647)
+| -..| .||.+ -.-.|+.| .--.+|+|||-.+-. + -|+ -||--+ .-..++
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl----------~--~Q~--kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL----------E--LQV--KLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEC---CCCEEEEECCCCCCH----------H--HHH--HHHHHHHCCEEEECCCC
T ss_conf 777761456567677643457615773---796587323110999----------9--999--99999870706735888
Q ss_pred ----CCEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH
Q ss_conf ----782999962981008833316564231-------4100013478899
Q gi|254780545|r 285 ----EGVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE 324 (647)
Q Consensus 285 ----~~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~ 324 (647)
-.|=||||||+.= ..+..-|||-. .+.+.+|-..+|.
T Consensus 271 ~~i~vdvRiIaaT~~dL---~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ 318 (464)
T COG2204 271 KPIKVDVRIIAATNRDL---EEEVAAGRFREDLYYRLNVVPLRLPPLRERK 318 (464)
T ss_pred CEECEEEEEEEECCCCH---HHHHHCCCCHHHHHHHHCCCEECCCCCCCCC
T ss_conf 60000169996057789---9998819737888865233110487622362
No 201
>PHA02244 ATPase-like protein
Probab=97.93 E-value=4.4e-05 Score=55.79 Aligned_cols=124 Identities=26% Similarity=0.360 Sum_probs=78.7
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH--HHHHHHHHH---CCHHHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 1233311003787425888999974246997020585--788644420---33245999999998737801206323564
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG--SDFVELFVG---VGASRVRDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~--s~~~~~~~g---~g~~~vr~lf~~a~~~~p~iifiDeida~ 252 (647)
+.+| |.|.||.|+|||..|+-||.-.+.||+...+ ++|- +.| ..-.-+-.-|.+|-++. -++|+|||||-
T Consensus 118 ~nip--V~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~--L~Gf~DAnG~yh~T~f~kaFk~G-GLfLlDEiDAS 192 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFE--LKGFIDANGKFHETPFYEAFKKG-GLFFIDEIDAS 192 (383)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHH--CCCEECCCCCEECCHHHHHHHCC-CEEEEEHHCCC
T ss_conf 5985--6997588886348999999985888244132301343--01256489967263899998618-87997320044
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHH-----HHCCC-CCCCCEEEEEECCC-----------CCCCCHHHCCCCCCCCEEEE
Q ss_conf 144557898862688988998998-----53032-35778299996298-----------10088333165642314100
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLV-----EMDGF-ESSEGVILIAATNR-----------PDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~-----~mdg~-~~~~~v~vi~aTn~-----------~~~lD~al~RpgRfd~~i~~ 315 (647)
|-+---++|+-|. --||. ...+..++|||-|- -..||.| -+||-+.+
T Consensus 193 -----------nP~aL~~lNaALAN~fm~FPdG~V~~HedFr~IAagNT~G~Gad~~YVGRnqLD~A-----TLDRFv~i 256 (383)
T PHA02244 193 -----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA-----TLDRFAPI 256 (383)
T ss_pred -----------CHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH-----HHHHEEEC
T ss_conf -----------87999999899864763476421100576389972465677887221144545646-----46203644
Q ss_pred CHHHHHH
Q ss_conf 0134788
Q gi|254780545|r 316 PNPDIVG 322 (647)
Q Consensus 316 ~~P~~~~ 322 (647)
+.+--+-
T Consensus 257 e~~YDEk 263 (383)
T PHA02244 257 EFDYDEK 263 (383)
T ss_pred CCCCCHH
T ss_conf 5683167
No 202
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00045 Score=48.43 Aligned_cols=187 Identities=25% Similarity=0.324 Sum_probs=110.1
Q ss_pred CCC-EEECCCCCHHHHHHHHHHHCCCC---CCEE-----CCCHHHHHHHHHHCCHH----HH--------HHHHHHHHH-
Q ss_conf 331-10037874258889999742469---9702-----05857886444203324----59--------999999987-
Q gi|254780545|r 181 PHG-VLLVGPPGTGKTLLARAVAGEAN---VPFF-----TISGSDFVELFVGVGAS----RV--------RDMFEQAKN- 238 (647)
Q Consensus 181 p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~-----~~~~s~~~~~~~g~g~~----~v--------r~lf~~a~~- 238 (647)
-+| +.+.|+-|+|||++.||+.-... +..+ .+|.+.+.+.|+-+.++ ++ |.|.+..++
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 78559997447776369999999855788517998357630178899999998405832006889999999999999817
Q ss_pred HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHC-CCCCCCCEEEEEECC-CCCCCCHHHCC-CCCCCCEE
Q ss_conf 37801206323564144557898862688988998--998530-323577829999629-81008833316-56423141
Q gi|254780545|r 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQ--LLVEMD-GFESSEGVILIAATN-RPDVLDAALLR-PGRFDRQI 313 (647)
Q Consensus 239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~--ll~~md-g~~~~~~v~vi~aTn-~~~~lD~al~R-pgRfd~~i 313 (647)
.-|-++++||...+.. .++-+ ||++.+ ++....+|+.+|-+- +|+.-=|++.- --|++-+|
T Consensus 130 ~r~v~l~vdEah~L~~--------------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 130 KRPVVLMVDEAHDLND--------------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred CCCEEEEEHHHHHHCH--------------HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHEEEEEE
T ss_conf 8873785016766175--------------48999999886203466721145507801143544288985431677899
Q ss_pred EECHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 000134788999999985488----777321102454412037989999999998764553202421045689
Q gi|254780545|r 314 TVPNPDIVGREHILMVHSRNV----PLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFE 382 (647)
Q Consensus 314 ~~~~P~~~~r~~i~~~~~~~~----~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~ 382 (647)
.+++-+...-..-++.++++- ++-.+--+..++..+.| .+--|.++|.-|...|...|.+.|+...+.
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf 538867478999999998505899666770578999998525-548999988999999987399751256513
No 203
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.88 E-value=0.00031 Score=49.61 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=110.0
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCC--CCCEECCCHHHHHHHHHHCCHHHHH------H-------HHH---HHHHHCCHH
Q ss_conf 311003787425888999974246--9970205857886444203324599------9-------999---998737801
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEA--NVPFFTISGSDFVELFVGVGASRVR------D-------MFE---QAKNNSPCI 243 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~--~~~f~~~~~s~~~~~~~g~g~~~vr------~-------lf~---~a~~~~p~i 243 (647)
.|||+.|++||+|+.++++++.-. +.||..+ ..|.++.|+- . .|+ .| +.-+.|
T Consensus 26 GGvlirg~~Gtakst~~r~l~~llp~~~p~~~l--------Pl~~tedrl~G~lDi~~tL~~G~~v~~~GLLa-~A~~gv 96 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRL--------PPGIADDRLLGGLDLAATLRAGRPVAERGLLA-EADGGV 96 (584)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEC--------CCCCCHHHHCCCCCHHHHHHCCCEECCCCHHH-CCCCCE
T ss_conf 518997799957999999999756899984656--------99997415147125999997689852575333-036998
Q ss_pred EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CCCEEEEEECCC---CCCCCHHHCCCCCC
Q ss_conf 206323564144557898862688988998998530---------3235--778299996298---10088333165642
Q gi|254780545|r 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SEGVILIAATNR---PDVLDAALLRPGRF 309 (647)
Q Consensus 244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~~v~vi~aTn~---~~~lD~al~RpgRf 309 (647)
+++||+.-+. ...++.||.-+| |.+. ....++|+..|- .+.+.++|++ ||
T Consensus 97 Lyvdevnll~--------------d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~de~~~~~l~d--Rl 160 (584)
T PRK13406 97 LVLAMAERLE--------------PGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEEDERAPAALAD--RL 160 (584)
T ss_pred EEEECHHHCC--------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH--HH
T ss_conf 9985147378--------------8899999999854874002587663566505899946788764311078887--65
Q ss_pred CCEEEECH-------HHHHHHHHHHHH--HHCCCCCCCCCCHHHHHHHHHCC--CH--HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 31410001-------347889999999--85488777321102454412037--98--9999999998764553202421
Q gi|254780545|r 310 DRQITVPN-------PDIVGREHILMV--HSRNVPLAPNVILKTIARGTPGF--SG--ADLRNLVNEAALMAARRNRRLV 376 (647)
Q Consensus 310 d~~i~~~~-------P~~~~r~~i~~~--~~~~~~~~~~~d~~~la~~t~g~--sg--Adi~~~~~eAa~~a~r~~~~~i 376 (647)
-.++.+.- +....+..|..- .+..+.++++ -+..++..+.-+ .| |||.. ++-|.-+|+-++++.|
T Consensus 161 a~~vd~~~~~~~~~~~~~~~~~~i~~Ar~~L~~V~i~d~-~~~~l~~~a~~~gv~g~Ra~i~~-~raArA~AAl~Gr~~V 238 (584)
T PRK13406 161 AFHLDLDGLALRDTREFPIDADDIAAARARLAAVRVPPE-AIEALCAAAAALGIASLRAPLLA-LRAARAAAALAGRTAV 238 (584)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHCCCCCC
T ss_conf 070681676666401111236899999986786666999-99999999998399862099999-9999999997499978
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 04568999750136
Q gi|254780545|r 377 TMQEFEDAKDKILM 390 (647)
Q Consensus 377 ~~~dl~~A~~rv~~ 390 (647)
+.+|+..|..-++.
T Consensus 239 ~~~Dl~~Aa~LvL~ 252 (584)
T PRK13406 239 EEADIALAARLVLA 252 (584)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 89999999998311
No 204
>pfam06480 FtsH_ext FtsH Extracellular. This domain is found in the FtsH family of proteins. FtsH is the only membrane-bound ATP-dependent protease universally conserved in prokaryotes. It only efficiently degrades proteins that have a low thermodynamic stability - e.g. it lacks robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni FtsH is involved in protection against environmental stress. and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded (personal obs: Yeats C). The precise function of this N-terminal region is unclear.
Probab=97.88 E-value=0.00034 Score=49.39 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=49.5
Q ss_pred CCCCCCCEEECHHHHHHHHHHCCEEEEEEECCEEE-------EEEECCCEEEEEE------ECCCCHHHHHHHHHCCCEE
Q ss_conf 77777740215899999997099159999889799-------9995798069998------2688279999999779828
Q gi|254780545|r 17 SAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHIT-------GFYVNGESSFQTY------MPLVGSKLLDKLQSKDIEI 83 (647)
Q Consensus 17 ~~~~~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~-------~~~~~g~~~~~t~------~p~~~~~l~~~L~e~~V~v 83 (647)
.......++++||+|++++++|+|++|.+.++.+. .....+....... .+...+.+.+.+.+.+++.
T Consensus 20 ~~~~~~~~~i~ys~f~~~l~~~~v~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 99 (104)
T pfam06480 20 LSSSSSTKEISYSEFLELLEAGKVKKVVIDDDEITKPTGDVAGKLKDGSKFTTYFIPTLPSVDSFLEKLEEALVEKGVKV 99 (104)
T ss_pred CCCCCCCCEECHHHHHHHHHCCCEEEEEEECCEEEECCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 99878750763999999997198659998688875021333314779994487789976656656689999999889879
Q ss_pred EEE
Q ss_conf 998
Q gi|254780545|r 84 SSR 86 (647)
Q Consensus 84 ~~~ 86 (647)
...
T Consensus 100 ~~~ 102 (104)
T pfam06480 100 SAK 102 (104)
T ss_pred EEE
T ss_conf 620
No 205
>KOG1968 consensus
Probab=97.87 E-value=1.1e-05 Score=60.11 Aligned_cols=199 Identities=21% Similarity=0.306 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCC-CC-CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 5698898528899999999987433567--66420123-33-11003787425888999974246997020585788644
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK--FKRLGGRI-PH-GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~--~~~~g~~~-p~-g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
..-+++.|...+-..+.+-.+-.+++++ |..-+--- -+ -+|++||||.|||..|.++|.+.|...+....++..+.
T Consensus 317 ~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk 396 (871)
T KOG1968 317 TSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSK 396 (871)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 30776633520366666588762213335400268615667788731788777205676630120654010475433442
Q ss_pred HHH---CC----HHHHHHHH---HHHHH-HCC-HHEEHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 420---33----24599999---99987-378-0120632356414-455789886268898899899853032357782
Q gi|254780545|r 221 FVG---VG----ASRVRDMF---EQAKN-NSP-CIVFVDEIDAVGR-HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGV 287 (647)
Q Consensus 221 ~~g---~g----~~~vr~lf---~~a~~-~~p-~iifiDeida~~~-~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v 287 (647)
+.. +| ..-|-..| ...+. +.+ .||.+||+|..-. .||. -+-+.+|.. .....|
T Consensus 397 ~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~---------v~~l~~l~~-----ks~~Pi 462 (871)
T KOG1968 397 KELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGG---------VSKLSSLCK-----KSSRPL 462 (871)
T ss_pred CHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHH---------HHHHHHHHH-----HCCCCE
T ss_conf 277766402446640001111113300046660699974255442000136---------999999998-----635776
Q ss_pred EEEEECCCCCCCCH-HHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99996298100883-331656423141000134788999999985--488777321102454412037989999999998
Q gi|254780545|r 288 ILIAATNRPDVLDA-ALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEA 364 (647)
Q Consensus 288 ~vi~aTn~~~~lD~-al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eA 364 (647)
+ .+.|--+.... ++.|.+ .-+++..|+...+..=+.-.+ ....++++ .++.+.+.+ |+||.++.+.-
T Consensus 463 v--~~cndr~~p~sr~~~~~~---~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~~l 532 (871)
T KOG1968 463 V--CTCNDRNLPKSRALSRAC---SDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIMQL 532 (871)
T ss_pred E--EEECCCCCCCCCCHHHHC---CEEEECCCCHHHHHHHHHHHHCCCCEECCCH-HHHHHHHHC----CCCHHHHHHHH
T ss_conf 8--873377776652022320---0234048857777766653302464241727-889998750----64799999877
Q ss_pred HHH
Q ss_conf 764
Q gi|254780545|r 365 ALM 367 (647)
Q Consensus 365 a~~ 367 (647)
...
T Consensus 533 q~~ 535 (871)
T KOG1968 533 QFW 535 (871)
T ss_pred HHH
T ss_conf 644
No 206
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=97.82 E-value=4.5e-05 Score=55.69 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH----HHHH-
Q ss_conf 8898528899999999987433567664201233311003787425888999974246---9970205857----8864-
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS----DFVE- 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s----~~~~- 219 (647)
.++.|---|=+|+-.++.=| .+-+=-||..|-+||||=|.|+|+-.+. .-||+.++.. |++|
T Consensus 135 ~~liG~aPAMQevfR~igRL----------~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ES 204 (471)
T TIGR01818 135 AELIGEAPAMQEVFRAIGRL----------SRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIES 204 (471)
T ss_pred CCCCCCCCHHHHHHHHHHHH----------CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHH
T ss_conf 21236885168999999975----------16960588855757758999998401375557773273023222466554
Q ss_pred -HHHH-----CCHHHHH-HHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCC-C---CC----
Q ss_conf -4420-----3324599-99999987378012063235641445578988626889889989985-303-2---35----
Q gi|254780545|r 220 -LFVG-----VGASRVR-DMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDG-F---ES---- 283 (647)
Q Consensus 220 -~~~g-----~g~~~vr-~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg-~---~~---- 283 (647)
+|.. .||...+ -=|++| ..--+|+|||=-. .. .-|| -||-- -|| | .+
T Consensus 205 ELFGHEkGAFTGA~~~~~GRFEQA---~GGTLFLDEIGDM-------Pl-----~~QT--RLLRVL~~G~f~rVGG~~p~ 267 (471)
T TIGR01818 205 ELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDM-------PL-----DLQT--RLLRVLADGEFYRVGGRTPI 267 (471)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEEC---CCCCEECCCCCCC-------CH-----HHHH--HHHHHHCCCCEEEECCCEEE
T ss_conf 321456530001025567772534---8882101021678-------77-----6877--79886407865772682024
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHHH----HHHHHHC----CCCCC-CCCCHHHHHH
Q ss_conf 778299996298100883331656423-------141000134788999----9999854----88777-3211024544
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGREH----ILMVHSR----NVPLA-PNVILKTIAR 347 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~~----i~~~~~~----~~~~~-~~~d~~~la~ 347 (647)
...|=|||||++- | .++.|-|+|= ..|.|.+|-..+|.+ ..+++++ +..+. ..++-+.+..
T Consensus 268 k~DVRi~AAThq~--L-e~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~ 344 (471)
T TIGR01818 268 KVDVRIVAATHQD--L-EALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELDVEPKLLSPEALEA 344 (471)
T ss_pred EEEEEEEECCCHH--H-HHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 5504667336656--8-999655881355555123346216872122668999999999998874286511348899999
Q ss_pred HH-HCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 12-03798--9999999998764553202421045689997
Q gi|254780545|r 348 GT-PGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 348 ~t-~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
.+ -.|=| -+|+|+|+- +++-.....|...|+.-.+
T Consensus 345 L~~~~WPGNVR~LEN~cR~---l~~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 345 LKRYDWPGNVRELENVCRR---LTVLASGDEVLVSDLPAEL 382 (471)
T ss_pred HHHCCCCCCHHHHHHHHHH---HHHHCCCCEEEEEECCHHH
T ss_conf 9725889852457789999---9873467646777757655
No 207
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.72 E-value=0.00012 Score=52.58 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHC---CCCCCEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 21000011242256988985288999999999874335-6---7664201---233311003787425888999974246
Q gi|254780545|r 133 SKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDP-Q---KFKRLGG---RIPHGVLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 133 SkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~-~---~~~~~g~---~~p~g~ll~GppGtGKTlla~a~a~e~ 205 (647)
|....|....+.-+|.+=.-+..+.+.|..+.+-+..+ . .+..+.. .+|||+-||||=|+|||+|--..=..+
T Consensus 10 sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~l 89 (367)
T COG1485 10 SPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESL 89 (367)
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98999997505677888867899999999999986264445552111003688888358888997864999999998658
Q ss_pred CCCE-ECCCHHHHH-----HHHHHCCHHHHHHHHHHHHHHC--CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9970-205857886-----4442033245999999998737--8012063235641445578988626889889989985
Q gi|254780545|r 206 NVPF-FTISGSDFV-----ELFVGVGASRVRDMFEQAKNNS--PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE 277 (647)
Q Consensus 206 ~~~f-~~~~~s~~~-----~~~~g~g~~~vr~lf~~a~~~~--p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~ 277 (647)
-++- ..+-=-.|+ +++.=.|.+- -+...|+..+ --++-|||+.-- ..+ | --.|+-||.+
T Consensus 90 p~~~k~R~HFh~FM~~vH~~l~~l~g~~d--pl~~iA~~~~~~~~vLCfDEF~Vt------DI~---D--AMiL~rL~~~ 156 (367)
T COG1485 90 PGERKRRLHFHRFMARVHQRLHTLQGQTD--PLPPIADELAAETRVLCFDEFEVT------DIA---D--AMILGRLLEA 156 (367)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHCCCEEEEEEEEEC------CHH---H--HHHHHHHHHH
T ss_conf 76456655077999999999999718888--657999999841788986303623------757---8--8999999999
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--HCCCHH
Q ss_conf 303235778299996298100883331656423141000134788999999985488777321102454412--037989
Q gi|254780545|r 278 MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGT--PGFSGA 355 (647)
Q Consensus 278 mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t--~g~sgA 355 (647)
+ |. .||+++|+.|.+ |--|=+++|-|.-++|- .++++.|+.-+.++..+|+....-.. .-.+++
T Consensus 157 L--f~--~GV~lvaTSN~~----P~~LY~dGlqR~~FLP~------I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl 222 (367)
T COG1485 157 L--FA--RGVVLVATSNTA----PDNLYKDGLQRERFLPA------IDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPL 222 (367)
T ss_pred H--HH--CCCEEEEECCCC----HHHHCCCCHHHHHHHHH------HHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCC
T ss_conf 9--97--796899958999----67854460257763779------9999875479970587662356666674455478
Q ss_pred HH
Q ss_conf 99
Q gi|254780545|r 356 DL 357 (647)
Q Consensus 356 di 357 (647)
+-
T Consensus 223 ~~ 224 (367)
T COG1485 223 DA 224 (367)
T ss_pred CH
T ss_conf 67
No 208
>KOG1051 consensus
Probab=97.69 E-value=0.00011 Score=52.81 Aligned_cols=127 Identities=30% Similarity=0.389 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf 8898528899999999987----433567664201233311003787425888999974246---997020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~----l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~ 220 (647)
+-|.|+++|...+.+.|.- +++| +++--.||.||.|+|||-||||+|... .-.|+.+..|+|.|.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~--------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051 562 ERVIGQDEAVAAIAAAIRRSRAGLKDP--------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHH
T ss_conf 544663778999999998432035788--------888589997888413899999999997288642689614555556
Q ss_pred HHHCCH-------HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--C-------
Q ss_conf 420332-------459999999987378012063235641445578988626889889989985303235--7-------
Q gi|254780545|r 221 FVGVGA-------SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--S------- 284 (647)
Q Consensus 221 ~~g~g~-------~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--~------- 284 (647)
--+.|+ .-.-.|.+.-|..--|||+|||||-- | ..++|-||.-||-+.- .
T Consensus 634 skligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEkA-----------h---~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051 634 SKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------H---PDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHC-----------C---HHHHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 530489955546305778889971699659998302222-----------8---88999999998627400588867504
Q ss_pred CCEEEEEECCCC
Q ss_conf 782999962981
Q gi|254780545|r 285 EGVILIAATNRP 296 (647)
Q Consensus 285 ~~v~vi~aTn~~ 296 (647)
.++|||.+.|.-
T Consensus 700 kN~I~IMTsn~~ 711 (898)
T KOG1051 700 KNAIFIMTSNVG 711 (898)
T ss_pred CCEEEEEECCCC
T ss_conf 645999942631
No 209
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.68 E-value=9.9e-05 Score=53.21 Aligned_cols=34 Identities=47% Similarity=0.708 Sum_probs=27.2
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 420123331--1003787425888999974246997
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~ 208 (647)
-+|+-+|+| ..++||||||||.||-.+|-++..|
T Consensus 11 ~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~ 46 (226)
T cd01393 11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 857998888399999999998999999999998542
No 210
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66 E-value=6.6e-05 Score=54.52 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHHHHH
Q ss_conf 569889852889999999998743356766420123331-1003787425888999974246-99702058578864442
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVELFV 222 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~~~~ 222 (647)
--|+|+-|++++ +..+|.|+|. ...|...-|= +||+||+|.||+.||+.+-.-. ..|++.+.||...+-=.
T Consensus 55 ~~F~dffGme~~---i~~iV~~~ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e~PL 127 (358)
T pfam08298 55 PAFADFFGMEET---IERIVNYFRH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFESPL 127 (358)
T ss_pred CCCCCCCCHHHH---HHHHHHHHHH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 542320015999---9999999999----972367210589997789877589999999872058648844897778985
Q ss_pred HC-CHHHHHHHHHH
Q ss_conf 03-32459999999
Q gi|254780545|r 223 GV-GASRVRDMFEQ 235 (647)
Q Consensus 223 g~-g~~~vr~lf~~ 235 (647)
+. -+...|++|+.
T Consensus 128 ~L~~p~~~r~~le~ 141 (358)
T pfam08298 128 HLFNPHHLRDILED 141 (358)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 47786775999998
No 211
>KOG0732 consensus
Probab=97.65 E-value=3.7e-06 Score=63.55 Aligned_cols=189 Identities=20% Similarity=0.112 Sum_probs=143.2
Q ss_pred CCCCCEEECCCCCHHHHHHH-HHHHCCC-----CCCEECCCHHHHHHHHHHCCHH--HHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 23331100378742588899-9974246-----9970205857886444203324--59999999987378012063235
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLA-RAVAGEA-----NVPFFTISGSDFVELFVGVGAS--RVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla-~a~a~e~-----~~~f~~~~~s~~~~~~~g~g~~--~vr~lf~~a~~~~p~iifiDeid 250 (647)
..++++++++|+++++++|+ ...+.++ .+.++.-..++....+|+.-+. .++-+|..+-..+|...|.++..
T Consensus 529 ~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~l 608 (1080)
T KOG0732 529 SRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYL 608 (1080)
T ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCC
T ss_conf 77555677888884301031128888875211237764011777767778754111012343270876079866565755
Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---------CCCCCHHHCCCCCCCCEEEECHHHH
Q ss_conf 6414-45578988626889889989985303235778299996298---------1008833316564231410001347
Q gi|254780545|r 251 AVGR-HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR---------PDVLDAALLRPGRFDRQITVPNPDI 320 (647)
Q Consensus 251 a~~~-~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~---------~~~lD~al~RpgRfd~~i~~~~P~~ 320 (647)
.-+- ++-.+. + ...-.+..||..+|+-+-.+.|+.|++++| |++-+.+..+|++|+..+...+|..
T Consensus 609 g~aIlh~~~~~---~-v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~~~~l~~~ 684 (1080)
T KOG0732 609 GPAILHRLEGL---P-VQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEFLSSLDEK 684 (1080)
T ss_pred CHHHHHHHHCC---C-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCHHHHCCHHCCHHH
T ss_conf 08999988514---0-5777788987556652478999999998731588334235325565417630433020013556
Q ss_pred HHHHHHHHHHHCCCCC---CC-CCC-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999998548877---73-211-024544120379899999999987645532
Q gi|254780545|r 321 VGREHILMVHSRNVPL---AP-NVI-LKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 321 ~~r~~i~~~~~~~~~~---~~-~~d-~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
..+..|...|....-. .. -+. ....+..+.+|.+++|+.+|++....+.++
T Consensus 685 ~~~t~i~e~~t~~~~~~~~~~~~~t~~~p~~~s~~~ff~r~I~~~~~~~~~~~~k~ 740 (1080)
T KOG0732 685 ALSTPILELHTWDTSFESVNKSVVTLSKPSAESTGAFFKRLIRKISQEPSGEAGKR 740 (1080)
T ss_pred HHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 50553212105522112367421132432145567888888998740101144577
No 212
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.64 E-value=0.00056 Score=47.77 Aligned_cols=40 Identities=40% Similarity=0.559 Sum_probs=27.6
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHH----CCCCCCEECCCH
Q ss_conf 420123331--1003787425888999974----246997020585
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVA----GEANVPFFTISG 214 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a----~e~~~~f~~~~~ 214 (647)
.+|.-+|+| +|++||||||||.||--++ .+.|-+-+++|.
T Consensus 11 ~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ 56 (231)
T pfam06745 11 ILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL 56 (231)
T ss_pred HCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 3169982996999985897259999999999999865896899981
No 213
>KOG1970 consensus
Probab=97.63 E-value=0.00058 Score=47.68 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH----------
Q ss_conf 69889852889999999998743356766-4201233311003787425888999974246997020585----------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFK-RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG---------- 214 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~-~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~---------- 214 (647)
|-+|+|=. |..+.||-+||+.-..+. ++|. +=.||.||+|||||-.-+-++.|.|.-++.-+.
T Consensus 80 t~eeLAVH---kkKI~eVk~WL~~~~~~~~~l~~---~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~ 153 (634)
T KOG1970 80 TLEELAVH---KKKISEVKQWLKQVAEFTPKLGS---RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENL 153 (634)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCC---EEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
T ss_conf 28887551---77489999999999974536676---0799857988871319999998648021230477665665554
Q ss_pred ---HHHHHHHHHCCHHHHHHHHHHHHH------------HCCHHEEHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHH
Q ss_conf ---788644420332459999999987------------378012063235641445578988626-8898899899853
Q gi|254780545|r 215 ---SDFVELFVGVGASRVRDMFEQAKN------------NSPCIVFVDEIDAVGRHRGIGLGGGND-EREQTLNQLLVEM 278 (647)
Q Consensus 215 ---s~~~~~~~g~g~~~vr~lf~~a~~------------~~p~iifiDeida~~~~r~~~~~~~~~-e~~~~ln~ll~~m 278 (647)
+.|...+++---......-..|.+ .+|-+|||||+--+.. .|+ +.-|-+-++++..
T Consensus 154 h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~--------~d~~~~f~evL~~y~s~ 225 (634)
T KOG1970 154 HNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY--------RDDSETFREVLRLYVSI 225 (634)
T ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHH--------HHHHHHHHHHHHHHHHC
T ss_conf 5544001330366789999899998762316531333346750798502614440--------03699999999999845
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC-----CEEEECHHHH----HHHHHHHHHHHCCCCCCC-CCCHHHHHHH
Q ss_conf 03235778299996298100883331656423-----1410001347----889999999854887773-2110245441
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFD-----RQITVPNPDI----VGREHILMVHSRNVPLAP-NVILKTIARG 348 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd-----~~i~~~~P~~----~~r~~i~~~~~~~~~~~~-~~d~~~la~~ 348 (647)
..-.-|++|.-.+.++..++-.++|--+- .+|.+.+=.- +.-..|...-. .++++ .+........
T Consensus 226 ---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~--~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970 226 ---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEA--NKKSGIKVPDTAEVEL 300 (634)
T ss_pred ---CCCCEEEEEECCCCCCCCCHHHHCHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH
T ss_conf ---77767999863535787634342426565335852476157767999999999999862--6666676750679999
Q ss_pred HHCCCHHHHHHHHHHHHHHH
Q ss_conf 20379899999999987645
Q gi|254780545|r 349 TPGFSGADLRNLVNEAALMA 368 (647)
Q Consensus 349 t~g~sgAdi~~~~~eAa~~a 368 (647)
.---+|.||.+.+|---+.+
T Consensus 301 i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970 301 ICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHCCCCHHHHHHHHHHHC
T ss_conf 98752773999987753320
No 214
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.63 E-value=0.0011 Score=45.69 Aligned_cols=246 Identities=19% Similarity=0.240 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-------CCEECCCHH----HHHHH---HHH
Q ss_conf 9999999874335676642012333110037874258889999742469-------970205857----88644---420
Q gi|254780545|r 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-------VPFFTISGS----DFVEL---FVG 223 (647)
Q Consensus 158 ~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-------~~f~~~~~s----~~~~~---~~g 223 (647)
+++.+++..|..-+. . .+=|-.+|++|.|||.||+++.+... +-|+.++.+ ++... .++
T Consensus 3 ~~~~~i~~~L~~~~~--~-----~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 75 (285)
T pfam00931 3 DMIEALIEKLLEMSE--N-----LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELG 75 (285)
T ss_pred HHHHHHHHHHHCCCC--C-----CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899999999864898--9-----539998899956399999999716556505983899997976668999999999856
Q ss_pred C--------CHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 3--------324-5999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 224 V--------GAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 224 ~--------g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
. ... ..+.+.+.. +...+.|.+|.+.. +..++.+...+..+.. |--||-+|.
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~~L-~~kr~LiVLDDVw~----------------~~~~~~l~~~~~~~~~--gSrIIvTTR 136 (285)
T pfam00931 76 LDDSDWVEKNESELAVKIKEAL-LRKRFLLVLDDVWE----------------KNDWDKIGVPFPDGEN--GSRVIVTTR 136 (285)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCC----------------HHHHHHHHCCCCCCCC--CCEEEEECC
T ss_conf 6654555578999999999997-27966999638887----------------8999997345757899--827998557
Q ss_pred CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8100883331656423141000134788999999985488777321102----454412037989999999998764553
Q gi|254780545|r 295 RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILK----TIARGTPGFSGADLRNLVNEAALMAAR 370 (647)
Q Consensus 295 ~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~----~la~~t~g~sgAdi~~~~~eAa~~a~r 370 (647)
..+.... .+.-+..+.+...+.++=.++|..|.-.......-+++ .+++.+.|. +--|..+ ++++..+
T Consensus 137 ~~~V~~~----~~~~~~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~Gl-PLai~~l---g~~L~~k 208 (285)
T pfam00931 137 SESVAGR----MGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGL-PLALKVL---GGLLAFK 208 (285)
T ss_pred CHHHHHH----CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHH---HHHHCCC
T ss_conf 5899987----378883476168987999999999846898999767999999999985899-4999999---9997179
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH-----CCCCCCHHHHHHHCCCCCCCCEE
Q ss_conf 2024210456899975013686556766686-6778999999999999985-----05877323432201455564056
Q gi|254780545|r 371 RNRRLVTMQEFEDAKDKILMGAERRSTAMTE-EEKKITAYHEAGHAVVACH-----VPKADPLHKATIIPRGRALGMVM 443 (647)
Q Consensus 371 ~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~-~ek~~vAyHEAGHAlva~~-----l~~~~~v~kVTIipRg~alG~t~ 443 (647)
. +...-..++++.....+..+. ..+ ...-..+|..-.+.+=.++ .|....+.+=.++.+.-|.||.+
T Consensus 209 --~---~~~~W~~~l~~l~~~~~~~~~-~~~i~~~l~~sY~~Lp~~lk~CfLy~s~FP~~~~i~~~~Lv~~WiaeGfi~ 281 (285)
T pfam00931 209 --S---TVQEWEHVLEQLNNELAGRDG-LNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281 (285)
T ss_pred --C---CHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCC
T ss_conf --9---899999999975113644764-889999999998379999999999986688997870999999999779989
No 215
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.00013 Score=52.38 Aligned_cols=203 Identities=22% Similarity=0.234 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHHCCCCCCEECCCHHHHH
Q ss_conf 6988985288999999---9998743---35676642012333110037874258889-999742469970205857886
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQ---EIVDFLC---DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~---~~v~~l~---~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a~e~~~~f~~~~~s~~~ 218 (647)
.+..|+|..---++++ ++|-.-- ..++|...-...-||++++||||.||||| .-++-++.-+-+..+.-|--
T Consensus 1453 ~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~- 1531 (3164)
T COG5245 1453 NNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC- 1531 (3164)
T ss_pred CCCCCCCCEECHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCC-
T ss_conf 3666677010102430467731245331319989999874063499978999751011263666543001567751124-
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCC---------------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 44420332459999999987378---------------012063235641445578988626889889989985303235
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSP---------------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES 283 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p---------------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~ 283 (647)
-.+++.++-|-+.- ..-| -|+|-|||. + .|+...+..++- --+-| |.|-.||=.
T Consensus 1532 ----t~T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~lVLFcDeIn-L--p~~~~y~~~~vI--~FlR~-l~e~QGfw~ 1600 (3164)
T COG5245 1532 ----TMTPSKLSVLERET-EYYPNTGVVRLYPKPVVKDLVLFCDEIN-L--PYGFEYYPPTVI--VFLRP-LVERQGFWS 1600 (3164)
T ss_pred ----CCCHHHHHHHHHHC-EEECCCCEEEECCCCCHHHEEEEEECCC-C--CCCCCCCCCCEE--EEEHH-HHHHCCCCC
T ss_conf ----57788999998640-1523688279766742132178731147-7--420013897448--86287-787525555
Q ss_pred C--------CCEEEEEECCCCCCCCHH-HCCCCCCCC---EEEECHHHHHHHHHHHHHHHCCCCC-CCCCC--HHHHHHH
Q ss_conf 7--------782999962981008833-316564231---4100013478899999998548877-73211--0245441
Q gi|254780545|r 284 S--------EGVILIAATNRPDVLDAA-LLRPGRFDR---QITVPNPDIVGREHILMVHSRNVPL-APNVI--LKTIARG 348 (647)
Q Consensus 284 ~--------~~v~vi~aTn~~~~lD~a-l~RpgRfd~---~i~~~~P~~~~r~~i~~~~~~~~~~-~~~~d--~~~la~~ 348 (647)
+ .|+++.||.|-+. ||. .-=|-||-| .++++.|....-..|...++.+.-+ -+..+ .+.+++.
T Consensus 1601 s~~~~wvTI~~i~l~Gacnp~t--d~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~a 1678 (3164)
T COG5245 1601 SIAVSWVTICGIILYGACNPGT--DEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSA 1678 (3164)
T ss_pred CHHHHHHHHCCEEEECCCCCCC--CCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3666576211359983689999--96657527787468359996286334499999999998888459898877999888
Q ss_pred ------------------HHCCCHHHHHHHHH
Q ss_conf ------------------20379899999999
Q gi|254780545|r 349 ------------------TPGFSGADLRNLVN 362 (647)
Q Consensus 349 ------------------t~g~sgAdi~~~~~ 362 (647)
--||+|.||...++
T Consensus 1679 Sv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245 1679 SVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 89999999886523200000337378889999
No 216
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.54 E-value=0.00023 Score=50.52 Aligned_cols=132 Identities=24% Similarity=0.387 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH----HHHHH------------------
Q ss_conf 43356766420123331--1003787425888999974246---997020585----78864------------------
Q gi|254780545|r 167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG----SDFVE------------------ 219 (647)
Q Consensus 167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~----s~~~~------------------ 219 (647)
+.+-+.=..+|.-+|+| +|+.|.||||||.++.-++... |.+.+++|- .+|++
T Consensus 8 ~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l 87 (230)
T PRK08533 8 LDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKL 87 (230)
T ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCE
T ss_conf 57135788717898898489998689987899999999999878986999994389999999999869981799757967
Q ss_pred ----HHHH-CCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf ----4420-3324----599999999873780120632356414455789886268898899899853032357782999
Q gi|254780545|r 220 ----LFVG-VGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI 290 (647)
Q Consensus 220 ----~~~g-~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi 290 (647)
.|-. .+.+ .+.++-...+...+-+|.||-+.++...- ..++.+.+++..+--+.....++++
T Consensus 88 ~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~---------~~~~~~~~~~~~lk~l~s~gktIil 158 (230)
T PRK08533 88 LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRD---------ASEVQIRDLMAFFKRISSLNKVIIL 158 (230)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC---------CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9996134335404578999999732664379899990531885167---------7789999999999999858988999
Q ss_pred EECCCCCCCCHHHCCCCCC
Q ss_conf 9629810088333165642
Q gi|254780545|r 291 AATNRPDVLDAALLRPGRF 309 (647)
Q Consensus 291 ~aTn~~~~lD~al~RpgRf 309 (647)
|-.|..+|...+.+=|+
T Consensus 159 --Tv~p~~~~e~~l~~lrs 175 (230)
T PRK08533 159 --TANPKELPESVLLILRT 175 (230)
T ss_pred --EECCCCCCHHHHHHHHE
T ss_conf --95633136245442041
No 217
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.54 E-value=0.0001 Score=53.08 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=36.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 100378742588899997424699702058578864442033245999999
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE 234 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~ 234 (647)
|.|.|+||||||.++|++|...++||+-+. ..++...|.. ++++|+
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~~~g~s---i~eif~ 47 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGMS---IPEIFA 47 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC---HHHHHH
T ss_conf 899889999889999999999798979685--9999994999---999998
No 218
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.01 Score=38.71 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=98.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-H---HHHH--CCHHHHHHHHHHHHHHC------C-HH
Q ss_conf 012333110037874258889999742469970205857886-4---4420--33245999999998737------8-01
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-E---LFVG--VGASRVRDMFEQAKNNS------P-CI 243 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~---~~~g--~g~~~vr~lf~~a~~~~------p-~i 243 (647)
+-+-|.=+|+-|+||+|||.+|.-+|.+.|.+-+ -++|++ | .+++ .-+.--...|..-+... | |.
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v--isTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSV--ISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEE--ECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 1578759996178877725799999997298610--04247999999737977455356757799998368999961313
Q ss_pred EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHH
Q ss_conf 20632356414455789886268898899899853032357782999962981008833316564231410001347889
Q gi|254780545|r 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGR 323 (647)
Q Consensus 244 ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r 323 (647)
=|.|-..++- .| -+.+++--+ .+...+|+=+--=-|..+++..+ +--...+++..+|.+.-
T Consensus 163 GF~dqa~~V~-------~G----I~~VI~RAi------~eG~~lIIEGvHlVPg~i~~~~~--~~n~~~~~l~i~dee~H 223 (299)
T COG2074 163 GFEDQASAVM-------VG----IEAVIERAI------EEGEDLIIEGVHLVPGLIKEEAL--GNNVFMFMLYIADEELH 223 (299)
T ss_pred HHHHHHHHHH-------HH----HHHHHHHHH------HCCCCEEEEEEEECCCCCCHHHH--CCCEEEEEEEECCHHHH
T ss_conf 1787767999-------88----999999998------53753588742115002167661--35517899983887899
Q ss_pred HHHHHHHHC----CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 999999854----887773211024544120379899999999987645532024210456899975013
Q gi|254780545|r 324 EHILMVHSR----NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKIL 389 (647)
Q Consensus 324 ~~i~~~~~~----~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~ 389 (647)
++=|---.+ +.|. ...++.. -++.++...-...|-.+|-..|..+|+++++++++
T Consensus 224 r~RF~~R~~~t~~~rp~------~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il 282 (299)
T COG2074 224 RERFYDRIRYTHASRPG------GRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRIL 282 (299)
T ss_pred HHHHHHHHHHHHCCCCH------HHHHHHH-----HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf 99999988887605965------6799999-----99999999999988865998112531999999999
No 219
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.54 E-value=7.8e-05 Score=53.98 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=49.3
Q ss_pred EEECCCCCHHHHHHHHHHHCCCC--------CCEECCC-HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf 10037874258889999742469--------9702058-57886444203324599999999873780120632356414
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEAN--------VPFFTIS-GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~--------~~f~~~~-~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~ 254 (647)
|.||||||||||.+|+.+|.... -.+++.. .++|-..|. .+-|+.+||+.+.-
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~wdgY~-----------------gq~vvi~DD~~~~~- 62 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWDGYT-----------------GQPVVIIDDFGQNP- 62 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC-----------------CCEEEEEECCCCCC-
T ss_conf 989799989889999999999999837787897796788776567889-----------------98579996577788-
Q ss_pred CCCCCCCCCCHHHHHHHHHH------HHHHCCCCCC----CCEEEEEECCC
Q ss_conf 45578988626889889989------9853032357----78299996298
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQL------LVEMDGFESS----EGVILIAATNR 295 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~l------l~~mdg~~~~----~~v~vi~aTn~ 295 (647)
. +..++ ..+.++ -..|+..+.. .-.+||++||.
T Consensus 63 --~----~~~~~--~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 63 --D----GPSDE--AELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred --C----CCHHH--HHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf --8----62889--9999875699838886676148884468889994799
No 220
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.52 E-value=4.1e-05 Score=55.97 Aligned_cols=144 Identities=31% Similarity=0.407 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHHHHHHHCCHHHHHHHH--------
Q ss_conf 33567664201233311003787425888999974246997020585------7886444203324599999--------
Q gi|254780545|r 168 CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFVELFVGVGASRVRDMF-------- 233 (647)
Q Consensus 168 ~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~~~~~g~g~~~vr~lf-------- 233 (647)
..-.+|-+-| +-|=|.||.|||||-||.++|.+.+-|.+-+.| ||++--|-|-..++|-|=|
T Consensus 12 ~R~l~yL~~G----~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~ 87 (265)
T TIGR02640 12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLE 87 (265)
T ss_pred HHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCC
T ss_conf 9876632278----866744788855689999999736896899865823265442315467522223201211134251
Q ss_pred ------------HHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------HHCCCCCCCC-------E
Q ss_conf ------------9998737801206323564144557898862688988998998-------5303235778-------2
Q gi|254780545|r 234 ------------EQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-------EMDGFESSEG-------V 287 (647)
Q Consensus 234 ------------~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-------~mdg~~~~~~-------v 287 (647)
-.|-+. ..-+.-||+- |.|- .|=|=||. ++-|-...+. -
T Consensus 88 d~~~~~W~D~rLt~Av~e-G~TLVYdEF~---RskP-----------~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~F 152 (265)
T TIGR02640 88 DIVRQNWVDNRLTLAVRE-GFTLVYDEFT---RSKP-----------ETNNVLLSVLEEGVLELPGKRGESRYVDVHPEF 152 (265)
T ss_pred CCCCCCCCCCHHHHHHHC-CCEEEECCCC---CCCC-----------HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf 220026678357899756-9727664757---8862-----------045656755552321588878778722578870
Q ss_pred EEEEECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf 99996298100-----88333165642314100013478899999998548
Q gi|254780545|r 288 ILIAATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN 333 (647)
Q Consensus 288 ~vi~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~ 333 (647)
=+|-+.|-.+. =-.||+= |+ -.|+++.||...-.+|+.-|...
T Consensus 153 R~IfTSNp~EYAGVh~~QDALlD--RL-~ti~~D~~D~~~e~ai~~~~t~~ 200 (265)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLD--RL-VTISMDYPDEDTETAILRAKTDV 200 (265)
T ss_pred CEEECCCCCCCCCCCCHHHHHHH--HH-CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 24631487010576771667766--44-00457854447899999986061
No 221
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49 E-value=0.00013 Score=52.38 Aligned_cols=43 Identities=30% Similarity=0.577 Sum_probs=35.5
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 331100378742588899997424699702058578864442033
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g 225 (647)
-|-|.|.|+||||||.++|.+|...++||+-+. +.+|...|..
T Consensus 4 kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D--~~Ie~~~g~s 46 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD--QEIEKRTGAD 46 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCCC
T ss_conf 882898899999889999999999699968780--9999997989
No 222
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.49 E-value=0.0011 Score=45.61 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHH--------------HHHHCC-----------------
Q ss_conf 331100378742588899997424----699702058578864--------------442033-----------------
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVE--------------LFVGVG----------------- 225 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~--------------~~~g~g----------------- 225 (647)
.+-+|+.|+||||||.||--+.-+ -|-|-++++-++-.+ .+...+
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~ 103 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEA 103 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 97799983899999999999999998855997899985799999999999849986897326838999615674311133
Q ss_pred -H----HHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf -2----459999999987378012063235641
Q gi|254780545|r 226 -A----SRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 226 -~----~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
. .-++.+-+..++..|..|+||=|.++.
T Consensus 104 ~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~ 136 (501)
T PRK09302 104 GEYDLSALIERIEYAIRKIKAKRVVIDSIEALF 136 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 447689999999999997199999999978998
No 223
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.46 E-value=0.00093 Score=46.19 Aligned_cols=40 Identities=40% Similarity=0.603 Sum_probs=28.6
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf 420123331--1003787425888999974246---997020585
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG 214 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~ 214 (647)
-+|+-+|+| ++++||||+|||.||--+|.++ |-..+++++
T Consensus 15 ~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidt 59 (224)
T PRK09361 15 LLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDT 59 (224)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 626998888799998999985999999999999974990999678
No 224
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.46 E-value=0.00014 Score=52.22 Aligned_cols=51 Identities=24% Similarity=0.469 Sum_probs=38.2
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 33311003787425888999974246997020585788644420332459999999
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~ 235 (647)
..+.|.|.|+||+|||.++|++|...++||+-+. ..++...|. .+.++|+.
T Consensus 3 ~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D--~~Ie~~~g~---si~~if~~ 53 (175)
T PRK00131 3 KGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTD--HLIEARAGK---SIPEIFEE 53 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC--HHHHHHHCC---CHHHHHHH
T ss_conf 9980898889999989999999999596902398--899976169---99999998
No 225
>KOG0478 consensus
Probab=97.46 E-value=0.0017 Score=44.31 Aligned_cols=119 Identities=29% Similarity=0.383 Sum_probs=66.2
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHHHCCHHHHH-----HHHHHHHH---HCCHHEEHHHHHHH
Q ss_conf 311003787425888999974246997-0205857886444203324599-----99999987---37801206323564
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFVGVGASRVR-----DMFEQAKN---NSPCIVFVDEIDAV 252 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~g~g~~~vr-----~lf~~a~~---~~p~iifiDeida~ 252 (647)
-.|||+|-|||||+-+-+-++.=+--- +-+-.||. -||.++.-.| ++--+.-+ .---|.-|||+|-+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS----avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS----AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----HHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHH
T ss_conf 228994699867899999999747754040587630----2200356776576554665048489728965771123333
Q ss_pred -HCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCC--CCCCEEEEEECCC------C-----C--CCCHHHCCCC
Q ss_conf -144557898862688988998998530---------323--5778299996298------1-----0--0883331656
Q gi|254780545|r 253 -GRHRGIGLGGGNDEREQTLNQLLVEMD---------GFE--SSEGVILIAATNR------P-----D--VLDAALLRPG 307 (647)
Q Consensus 253 -~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~--~~~~v~vi~aTn~------~-----~--~lD~al~Rpg 307 (647)
..+| +-|+..|. |.- =|..-=|+||.|- | + .|.|-||+
T Consensus 539 ~dStr---------------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS-- 601 (804)
T KOG0478 539 SDSTR---------------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS-- 601 (804)
T ss_pred HHHHH---------------HHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHH--
T ss_conf 27788---------------9999999876311743022342166530344535432457999762321678805643--
Q ss_pred CCCCEE-EECHHHHH
Q ss_conf 423141-00013478
Q gi|254780545|r 308 RFDRQI-TVPNPDIV 321 (647)
Q Consensus 308 Rfd~~i-~~~~P~~~ 321 (647)
|||-.+ .++.||..
T Consensus 602 RFDLIylllD~~DE~ 616 (804)
T KOG0478 602 RFDLIFLLLDKPDER 616 (804)
T ss_pred HHCEEEEEECCCCHH
T ss_conf 233789984275326
No 226
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.013 Score=37.94 Aligned_cols=125 Identities=21% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHH---HHHHHCCHHEEHHHHHHH
Q ss_conf 20123331100378742588899997424699702058578864442033245999999---998737801206323564
Q gi|254780545|r 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE---QAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~---~a~~~~p~iifiDeida~ 252 (647)
+...++ =++++||-+||||.+.+-+.....-.+++++--|...-. .+..+.+. .+.....+.||+|||..+
T Consensus 33 ~~~~~~-i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~~d~~~~~-----~~l~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 33 LDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR-----IELLDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred HCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 035785-499988864778999999997477735999736200013-----56778999999852225745999833376
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHH
Q ss_conf 144557898862688988998998530323577829999629810088333165642314100013478899
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGRE 324 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~ 324 (647)
.+.++.|+-|. |.... .|++.|.+-..-....+-.=|||.......|+ +..+..
T Consensus 107 ------------~~W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~s~~L~GR~~~~~l~Pl-SF~Efl 160 (398)
T COG1373 107 ------------PDWERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPL-SFREFL 160 (398)
T ss_pred ------------HHHHHHHHHHH---CCCCC--EEEEECCCHHHHCCCHHHHCCCCEEEEEECCC-CHHHHH
T ss_conf ------------10899999997---56775--09998371675413302324998237898488-889986
No 227
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=97.43 E-value=0.00041 Score=48.75 Aligned_cols=154 Identities=22% Similarity=0.319 Sum_probs=100.8
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------------EECCCHHHHHH---HHHH--------------
Q ss_conf 01233311003787425888999974246997----------------02058578864---4420--------------
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------------FFTISGSDFVE---LFVG-------------- 223 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------------f~~~~~s~~~~---~~~g-------------- 223 (647)
..++|-..||+||+|+||.+||.++|...-+. |-+-+.+||.- -.-.
T Consensus 10 ~~r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~~g 89 (216)
T TIGR00678 10 KGRLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGEEG 89 (216)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 06788612544488874899999999998077857788888588899987079982378742347777776458976256
Q ss_pred ---------CCHHHHHHHHHHHH----HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf ---------33245999999998----73780120632356414455789886268898899899853032357782999
Q gi|254780545|r 224 ---------VGASRVRDMFEQAK----NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI 290 (647)
Q Consensus 224 ---------~g~~~vr~lf~~a~----~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi 290 (647)
.+-..||+|=+..- ...-=||.||..|.+. ++-=|.||--+. +...++++|
T Consensus 90 ~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn--------------~~AANALLKtLE--EPp~~t~fi 153 (216)
T TIGR00678 90 SAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMN--------------EAAANALLKTLE--EPPPNTLFI 153 (216)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCC--------------HHHHHHHHHHEE--CCCCCEEEE
T ss_conf 4211367878727899999998606421475179976732325--------------898986510101--279870798
Q ss_pred EECCCC--CCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHCCCH
Q ss_conf 962981--00883331-65642314100013478899999998548877732--110245441203798
Q gi|254780545|r 291 AATNRP--DVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPN--VILKTIARGTPGFSG 354 (647)
Q Consensus 291 ~aTn~~--~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~--~d~~~la~~t~g~sg 354 (647)
=.|+.| +.|=|-|. | =+++.|..|+.+.-.++|.-.. ..++ -+...+++.+.|.-+
T Consensus 154 L~~~~~DP~~lLpTI~SR----Cq~~~f~~l~~~~~~~~L~~~g----~~~~~~~~a~~~~~~~~G~p~ 214 (216)
T TIGR00678 154 LITHSPDPERLLPTIRSR----CQVLPFPPLSEEALLQWLIEQG----ISENVPEAAELLLALAGGSPG 214 (216)
T ss_pred EECCCCCHHHHCCCCCCC----EEEEEECCCCHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCCCCC
T ss_conf 850888843322111032----0158625998899999999708----787806899999998468512
No 228
>PRK13947 shikimate kinase; Provisional
Probab=97.41 E-value=0.00017 Score=51.52 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=32.9
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH
Q ss_conf 311003787425888999974246997020585788644420
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG 223 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g 223 (647)
|-|.|.|+||||||.++|.+|...++||+-+. +.+|...|
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D--~~Ie~~~g 41 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTD--KEIEKMAG 41 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHCC
T ss_conf 85899799999889999999999796989874--99998829
No 229
>PRK13948 shikimate kinase; Provisional
Probab=97.41 E-value=0.00022 Score=50.72 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 2333110037874258889999742469970205857886444203324599999999
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA 236 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a 236 (647)
+|.+-|.|.|+||+|||.++|.+|...++||+-+. ..+|...|. .|.++|++-
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D--~~Ie~~~g~---sI~eIF~~~ 60 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTD--KLITRVVGK---SIPEVFAQE 60 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCC---CHHHHHHHH
T ss_conf 99981898899999889999999999695988884--999998893---999999984
No 230
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=97.41 E-value=0.00031 Score=49.60 Aligned_cols=21 Identities=57% Similarity=0.773 Sum_probs=18.6
Q ss_pred EEECCCCCHHHHHHHHHHHCC
Q ss_conf 100378742588899997424
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e 204 (647)
+...||+|||||++|-|.|-+
T Consensus 22 v~~~GpAGtGKT~la~~~al~ 42 (205)
T pfam02562 22 VFGIGPAGTGKTYLAVAAAVD 42 (205)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 799899986099999999999
No 231
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.39 E-value=8.9e-05 Score=53.57 Aligned_cols=29 Identities=31% Similarity=0.688 Sum_probs=25.3
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10037874258889999742469970205
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
|...||||+|||-.||-+|.+.+.+++|.
T Consensus 3 I~ISGpPGSGktTvA~~lA~~Lsl~~iSa 31 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 88735896864789999998639831202
No 232
>PRK13946 shikimate kinase; Provisional
Probab=97.39 E-value=0.00021 Score=50.90 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=37.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 311003787425888999974246997020585788644420332459999999
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~ 235 (647)
|-|.|.|+||+|||.++|.+|...++||+-+.. .+|...|.. |.++|+.
T Consensus 21 knIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~--~IE~~~g~s---I~eIF~~ 69 (195)
T PRK13946 21 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT--EIERAARMT---IPEIFAT 69 (195)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH--HHHHHHCCC---HHHHHHH
T ss_conf 958998999998899999999997979898859--999980998---9999998
No 233
>PRK13949 shikimate kinase; Provisional
Probab=97.38 E-value=0.00023 Score=50.53 Aligned_cols=49 Identities=35% Similarity=0.526 Sum_probs=36.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 311003787425888999974246997020585788644420332459999999
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~ 235 (647)
+-|.|.|+||+|||.++|++|...++||+-+. ..+|...|. .|.++|+.
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D--~~Ie~~~g~---sI~eif~~ 50 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD--FFIENRFHK---TVGDIFAE 50 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCC---CHHHHHHH
T ss_conf 83899799999889999999999599979784--999998599---99999998
No 234
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00054 Score=47.87 Aligned_cols=250 Identities=26% Similarity=0.329 Sum_probs=123.3
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHCCHHHHHHHH--H---HHHH---HCCHHEEHHHHHHHH
Q ss_conf 110037874258889999742469-970205857886444203324599999--9---9987---378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGVGASRVRDMF--E---QAKN---NSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~g~~~vr~lf--~---~a~~---~~p~iifiDeida~~ 253 (647)
.|||.|-|||||+-|-|-+++-+- .-|.+-.||+ -+|.+|+-+|+-+ + .|-+ ..+-|.-|||+|-.-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCC----CCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEECCCCC
T ss_conf 69981798251999999988648840797264125----45730699970677607886777999249779997056777
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCC--------EEEEEECCCCC-------------CCCHHHCCCCCC
Q ss_conf 445578988626889889989985303--23-5778--------29999629810-------------088333165642
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDG--FE-SSEG--------VILIAATNRPD-------------VLDAALLRPGRF 309 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~-~~~~--------v~vi~aTn~~~-------------~lD~al~RpgRf 309 (647)
+ ..-+.+..-|.- .+ ...| -=|+||.|=.. .|+++||- ||
T Consensus 397 -----------~---~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RF 460 (682)
T COG1241 397 -----------E---EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RF 460 (682)
T ss_pred -----------H---HHHHHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH--HC
T ss_conf -----------6---7899999998752751205542541114444566518877767999997885589835775--17
Q ss_pred CCEEE-ECHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 31410-001347889----9999998548877732110245441203798999999999876455320242104568999
Q gi|254780545|r 310 DRQIT-VPNPDIVGR----EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDA 384 (647)
Q Consensus 310 d~~i~-~~~P~~~~r----~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A 384 (647)
|-.+. .+-||.+.= ..|+..|....+-.. .+.++ ... +...+++--
T Consensus 461 DLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~-----------~~~~~--~~~----------------~~~~~~~~l 511 (682)
T COG1241 461 DLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET-----------ISLDG--VDE----------------VEERDFELL 511 (682)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC-----------CCCCC--CCC----------------CCCCCHHHH
T ss_conf 7547705788853359999999998634565322-----------33332--222----------------234658999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHH
Q ss_conf 75013686556766686677899999999999998505877323432201455564056400244322689999999999
Q gi|254780545|r 385 KDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTI 464 (647)
Q Consensus 385 ~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v 464 (647)
.--|.+...+....++++-+ -.+..|++. . |..... .. ....+-.|..+|++-|..
T Consensus 512 rkYI~YAR~~v~P~lt~ea~---------e~l~~~Yv~---------~--Rk~~~~--~~--~~~~~piT~RqLEsiiRL 567 (682)
T COG1241 512 RKYISYARKNVTPVLTEEAR---------EELEDYYVE---------M--RKKSAL--VE--EKRTIPITARQLESIIRL 567 (682)
T ss_pred HHHHHHHHCCCCCCCCHHHH---------HHHHHHHHH---------H--HHCCCC--CC--CCCCCCCCHHHHHHHHHH
T ss_conf 99999875058961289999---------999999987---------6--520122--34--567545619999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 987898888861368756523355899999999998624888766733
Q gi|254780545|r 465 LMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKV 512 (647)
Q Consensus 465 ~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i 512 (647)
+.|= -.+-+- +.++ ..|...|-++-.....+.++...-|-+
T Consensus 568 aeA~---Ak~rLS-~~V~---~eD~~eAi~lv~~~l~~v~~dp~~g~~ 608 (682)
T COG1241 568 AEAH---AKMRLS-DVVE---EEDVDEAIRLVDFSLKTVAVDPEKGKI 608 (682)
T ss_pred HHHH---HHHHCC-CCCC---HHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9998---865444-7778---899999999999998886137567721
No 235
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.36 E-value=0.0012 Score=45.35 Aligned_cols=183 Identities=28% Similarity=0.420 Sum_probs=99.4
Q ss_pred CEEECCCCCHHHHHHHHHHHCC--CCCCEECCCHH----HHH-HHHHH------CCHHH--HHHHHHHHHHHCCHHEEHH
Q ss_conf 1100378742588899997424--69970205857----886-44420------33245--9999999987378012063
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGE--ANVPFFTISGS----DFV-ELFVG------VGASR--VRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e--~~~~f~~~~~s----~~~-~~~~g------~g~~~--vr~lf~~a~~~~p~iifiD 247 (647)
-+|+.|-|||||-.||||+-.. ..-||+.+.+. +.+ |+|+| .|+++ -+-+|++|- --.+|.|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEECC---CCCCHHH
T ss_conf 7685387655689999999853655698379985034477646777445765643300106655410157---8760898
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEE-------E
Q ss_conf 235641445578988626889889989985-----3032357782999962981008833316564231410-------0
Q gi|254780545|r 248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVE-----MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQIT-------V 315 (647)
Q Consensus 248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~-----mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~-------~ 315 (647)
||--+.- +-. .-|-+.|.| ++|-...-.|=||+||+++= ..|.|-|||-+-.| |
T Consensus 415 eIgd~p~----------~~Q-s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDMPL----------ALQ-SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred HHHHCHH----------HHH-HHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCH---HHHHHCCCCHHHHHHHHCCEEE
T ss_conf 7611418----------999-9999998618252358852157799983467579---9998759714878887447155
Q ss_pred CHHHHHHHH---HHHHHHH-CC----CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 013478899---9999985-48----87773211024544120379899999999987645532024210456899975
Q gi|254780545|r 316 PNPDIVGRE---HILMVHS-RN----VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386 (647)
Q Consensus 316 ~~P~~~~r~---~i~~~~~-~~----~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~ 386 (647)
.+|-..+|. ..|..++ +. ..+++|.--.-++..=|| -=-+|-|++..+++++ +.-.|...|+...+-
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred CCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC---CCCEEECCCCCHHHH
T ss_conf 06861104665789999998726877568999999998578998-2899999999998707---997357144988887
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34 E-value=0.0013 Score=45.09 Aligned_cols=40 Identities=40% Similarity=0.569 Sum_probs=27.4
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf 420123331--1003787425888999974246---997020585
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG 214 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~ 214 (647)
-+|+-+|+| ++++||||+|||.|+--+|.++ +-.-+++++
T Consensus 11 vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt 55 (218)
T cd01394 11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 856998788799998999984999999999998636986999966
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33 E-value=0.00045 Score=48.45 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=22.1
Q ss_pred EEECCCCCHHHHHHHHHHHCC---CCCCEECCC
Q ss_conf 100378742588899997424---699702058
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE---ANVPFFTIS 213 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e---~~~~f~~~~ 213 (647)
.|+.||||||||.||--++.+ .|-+.++++
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 158768999999999999999987699789999
No 238
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.32 E-value=0.0036 Score=41.90 Aligned_cols=139 Identities=22% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCHH-----------HHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 311003787425888999974246---------9970205857-----------88644420332459999999987378
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISGS-----------DFVELFVGVGASRVRDMFEQAKNNSP 241 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~s-----------~~~~~~~g~g~~~vr~lf~~a~~~~p 241 (647)
|=|++.|+||.|||.|++-+|-.+ ..||+ ++.. +++..........+.+.|.....+.+
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~-~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFF-LPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPE 79 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE-EEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 98999827989899999999999986984369728999-99567077766899999998767745763789999983977
Q ss_pred HH-EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCC--HHHCCCCCCCCEEEECH
Q ss_conf 01-2063235641445578988626889889989985-30323577829999629810088--33316564231410001
Q gi|254780545|r 242 CI-VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLD--AALLRPGRFDRQITVPN 317 (647)
Q Consensus 242 ~i-ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD--~al~RpgRfd~~i~~~~ 317 (647)
.+ +.+|-+|-+....+.... .+-+..+|.. +-|--=...-++| |-||...+ +..++ -+.+++|.-
T Consensus 80 k~L~ilDGlDE~~~~~~~~~~------~~~~~~~l~~ll~~~~lp~~~vli--TsRp~~~~~l~~~~~---~~~~~ei~G 148 (165)
T pfam05729 80 RVLLILDGLDELASDLGQLDG------PLPVLTLLSSLLRKKLLPGASLLL--TSRPDALRDLRRGLE---EPRYLEVLG 148 (165)
T ss_pred CEEEEECCHHHHCCCCCCCCC------CCCHHHHHHHHHHHCCCCCCEEEE--EECCCHHHHHHHHCC---CCCEEEECC
T ss_conf 289996484551444356444------577999999998415278864999--968037988577648---871899889
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 347889999999854
Q gi|254780545|r 318 PDIVGREHILMVHSR 332 (647)
Q Consensus 318 P~~~~r~~i~~~~~~ 332 (647)
=+.+.+++.++.|..
T Consensus 149 Fs~~~~~~yi~~~F~ 163 (165)
T pfam05729 149 FSEEDRKQYVRKYFS 163 (165)
T ss_pred CCHHHHHHHHHHHCC
T ss_conf 999999999998679
No 239
>KOG0480 consensus
Probab=97.27 E-value=0.0011 Score=45.79 Aligned_cols=164 Identities=25% Similarity=0.332 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 2569889852889999999998743356766420123331---1003787425888999974246997020585788644
Q gi|254780545|r 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
.--|--|-|.+.+|.-+. ...+-.-.|++.-| .+-|| |+++|-|||||+-+-||+++=+--. +++||.. +-
T Consensus 341 ~Sl~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg-~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGka--SS 414 (764)
T KOG0480 341 NSLFPSIYGHELVKAGIL--LSLFGGVHKSAGEG-TSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKA--SS 414 (764)
T ss_pred HHHCCCCCCHHHHHHHHH--HHHHCCCCCCCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-EEECCCC--CC
T ss_conf 763762015389986689--99847854357898-654677318995799713889999986548731-5850763--44
Q ss_pred HHHCCHHHHHHH--HH---HHHH---HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCCEE-
Q ss_conf 420332459999--99---9987---378012063235641445578988626889889989985303--23-577829-
Q gi|254780545|r 221 FVGVGASRVRDM--FE---QAKN---NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FE-SSEGVI- 288 (647)
Q Consensus 221 ~~g~g~~~vr~l--f~---~a~~---~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~-~~~~v~- 288 (647)
-.|.+++-|||= ++ .|-+ .---|.-|||+|-..- ++|+ .++.-|.- .+ ...||+
T Consensus 415 aAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~------------~dqv--AihEAMEQQtISIaKAGv~a 480 (764)
T KOG0480 415 AAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV------------KDQV--AIHEAMEQQTISIAKAGVVA 480 (764)
T ss_pred CCCCEEEEEECCCCCCEEEECCCEEECCCCEEEECHHCCCCH------------HHHH--HHHHHHHHHEEHHEECCEEE
T ss_conf 346468997637777335534737881696688310003570------------7689--99999875100033020688
Q ss_pred -------EEEECCCC-------------CCCCHHHCCCCCCCC-EEEECHHHHHHHHHHHHH
Q ss_conf -------99962981-------------008833316564231-410001347889999999
Q gi|254780545|r 289 -------LIAATNRP-------------DVLDAALLRPGRFDR-QITVPNPDIVGREHILMV 329 (647)
Q Consensus 289 -------vi~aTn~~-------------~~lD~al~RpgRfd~-~i~~~~P~~~~r~~i~~~ 329 (647)
||||+|-. =.++++|+- |||- -|.++-||...-..|-++
T Consensus 481 TLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~h 540 (764)
T KOG0480 481 TLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARH 540 (764)
T ss_pred EECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHH--HHCEEEEEECCCCHHHHHHHHHH
T ss_conf 6222355555327767745533006652277804542--22279999357866777999999
No 240
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.26 E-value=0.001 Score=45.95 Aligned_cols=114 Identities=27% Similarity=0.345 Sum_probs=57.6
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCC-----CCCCEECCC-----HHHHHHHHH---HC------C----HHHHHHHHHHHH
Q ss_conf 331100378742588899997424-----699702058-----578864442---03------3----245999999998
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGE-----ANVPFFTIS-----GSDFVELFV---GV------G----ASRVRDMFEQAK 237 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e-----~~~~f~~~~-----~s~~~~~~~---g~------g----~~~vr~lf~~a~ 237 (647)
|+=|+|.||+|+|||..+--+|.. ..|-++++. +.+-..-|. |+ . ++-+++..+.++
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96999989999988999999999999779928999758776889999999998639817814877787899999999988
Q ss_pred HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf 737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r 238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp 306 (647)
...--+||||- -|+. ..|+ .-+.+|-.-.+.....+-.+|+.||...+.+..+..+-
T Consensus 81 ~~~~D~IlIDT---aGr~-------~~d~--~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 137 (196)
T pfam00448 81 AENYDVVLVDT---AGRL-------QNDK--NLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFN 137 (196)
T ss_pred HCCCCEEEEEC---CCCC-------CCCH--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 46899999989---9987-------4767--78999999985228730289985677821378999876
No 241
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.25 E-value=0.00028 Score=49.99 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 69889852889999999998743356766420123331---100378742588899997424699702
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGEANVPFF 210 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e~~~~f~ 210 (647)
+-.|+|=. |..+.+|-.+|+- .-|-..+-|| +|++||||||||..-|.+|.|.|..+.
T Consensus 87 ~~~~lAvH---K~Ki~~v~~wl~a----~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ 147 (670)
T TIGR00602 87 TQEELAVH---KKKIEEVEEWLKA----QVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQ 147 (670)
T ss_pred CHHHHHHH---HHHHHHHHHHHHH----HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24577664---7779999999752----0020456677537884175588447899999888644565
No 242
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.24 E-value=0.00093 Score=46.17 Aligned_cols=118 Identities=30% Similarity=0.372 Sum_probs=63.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
++|.||||+||+..|+-+|...+++. +|..+++...+-.+.. +-+ ++-.+ ..+|. ..
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~--is~gdlLR~~~~~~t~----~g~-------------~i~~~-~~~G~-lv-- 58 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLREEIASGTE----LGK-------------KAKEY-IDSGK-LV-- 58 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE--ECHHHHHHHHHHCCCH----HHH-------------HHHHH-HHCCC-CC--
T ss_conf 89989999987999999999979846--7688999999974995----899-------------99999-98799-77--
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH------HCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 268898899899853032357782999962981008833------316564231410001347889999999
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA------LLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~a------l~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
.++ -+++-+...|.......|+|+= ..|..++.| +.+-++.+..|++..|+..-.+.++..
T Consensus 59 p~~--i~~~l~~~~l~~~~~~~g~ilD---GfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R 125 (194)
T cd01428 59 PDE--IVIKLLKERLKKPDCKKGFILD---GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGR 125 (194)
T ss_pred CHH--HHHHHHHHHHHCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 899--9999999998476543877874---797989999999999973998788999966899999999646
No 243
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.22 E-value=0.00035 Score=49.25 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=36.4
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 3331100378742588899997424699702058578864442033
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g 225 (647)
+++-|.|.|+||+|||.++|.+|...++||+-+. +++|...|..
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D--~~Ie~~~g~s 44 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQALGYRFVDTD--LWLQSTLQMT 44 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHHHHCCC
T ss_conf 9998899889999889999999998599979786--9999883989
No 244
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.17 E-value=0.0079 Score=39.46 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 268999999999------9987898888861368756523355899999999
Q gi|254780545|r 452 STTYVWMTSRLT------ILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLAR 497 (647)
Q Consensus 452 ~~tk~~l~~~i~------v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~ 497 (647)
......+..+|- .++.|-+.|-+-+|..+.+ -.++.+|-++|.
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~---~e~i~~A~~~ag 587 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT---DEEIIEAAQLAG 587 (709)
T ss_pred HCCHHHHHHHEEEECCCCHHHCCCHHHHHHCCCCCCC---HHHHHHHHHHHC
T ss_conf 6699999865468746653204739879746899999---799999999837
No 245
>KOG0477 consensus
Probab=97.15 E-value=0.0064 Score=40.10 Aligned_cols=138 Identities=25% Similarity=0.376 Sum_probs=69.6
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCC-HHHHHHHHHHCCHHHHHH-----HHHHHHH---HCCHHEEHHHHHHHH
Q ss_conf 1100378742588899997424699702058-578864442033245999-----9999987---378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS-GSDFVELFVGVGASRVRD-----MFEQAKN---NSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~-~s~~~~~~~g~g~~~vr~-----lf~~a~~---~~p~iifiDeida~~ 253 (647)
.+||.|-|||||+-+-|-++.-+.-..|.+- |+ --||.+|.-.|+ ---.|-+ .-.-|..|||+|..-
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA----SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA----SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEEEECCCCCEEEECCCEEEECCCCEEEEEHHHHHC
T ss_conf 2898469982289999999862753168506775----433326887517865303651672897268537741211204
Q ss_pred CCCCCCCCCCCHHHHH-HHH----HHHHHHCCCCCCCCEEEEEECCC--------------CCCCCHHHCCCCCCCCEEE
Q ss_conf 4455789886268898-899----89985303235778299996298--------------1008833316564231410
Q gi|254780545|r 254 RHRGIGLGGGNDEREQ-TLN----QLLVEMDGFESSEGVILIAATNR--------------PDVLDAALLRPGRFDRQIT 314 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~-~ln----~ll~~mdg~~~~~~v~vi~aTn~--------------~~~lD~al~RpgRfd~~i~ 314 (647)
.+ ...+-|..-|| .+. .+.+-+.+ .-.||||.|- .+.-+|-|- |||-...
T Consensus 560 dq---DRtSIHEAMEQQSISISKAGIVtsLqA-----rctvIAAanPigGRY~~s~tFaqNV~ltePIlS---RFDiLcV 628 (854)
T KOG0477 560 DQ---DRTSIHEAMEQQSISISKAGIVTSLQA-----RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS---RFDILCV 628 (854)
T ss_pred CC---CCCHHHHHHHHCCHHHHHHHHHHHHHH-----HHHHHEECCCCCCCCCCCCCHHHCCCCCCCHHH---HCCEEEE
T ss_conf 01---101599998751201446668998875-----544300027777756875114330554444121---1132456
Q ss_pred EC---HHHHHHH--HHHHHHHHCCCC
Q ss_conf 00---1347889--999999854887
Q gi|254780545|r 315 VP---NPDIVGR--EHILMVHSRNVP 335 (647)
Q Consensus 315 ~~---~P~~~~r--~~i~~~~~~~~~ 335 (647)
|. -|-..++ +-+..-|.+.-|
T Consensus 629 vkD~vd~~~De~lA~fVV~Sh~r~hp 654 (854)
T KOG0477 629 VKDTVDPVQDEKLAKFVVGSHVRHHP 654 (854)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 40355813678899999876740487
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.13 E-value=0.0018 Score=44.02 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=40.2
Q ss_pred EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH----HHHHHHHHCC-------------------HHHHHHH-HHHH
Q ss_conf 1003787425888999974246---9970205857----8864442033-------------------2459999-9999
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS----DFVELFVGVG-------------------ASRVRDM-FEQA 236 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s----~~~~~~~g~g-------------------~~~vr~l-f~~a 236 (647)
+|++||||+|||.|+.-+|..+ +...+++++- +..+.+.+.. ..+++.. ....
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89998999989999999999987639979999866644899999998622467130799935999769999999999999
Q ss_pred HHHCCHHEEHHHHHHHHCC
Q ss_conf 8737801206323564144
Q gi|254780545|r 237 KNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 237 ~~~~p~iifiDeida~~~~ 255 (647)
....|..++||.|-.+.+.
T Consensus 82 ~~~~~vliiiDSit~~~~a 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HCCCCEEEEEECHHHHHHH
T ss_conf 8699779999288998877
No 247
>PRK00625 shikimate kinase; Provisional
Probab=97.12 E-value=0.00053 Score=47.92 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=28.7
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 1100378742588899997424699702058
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS 213 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~ 213 (647)
-+.|.|+||+|||-++|++|...++||+-+.
T Consensus 2 nI~LIG~mGsGKStiGk~LA~~l~~~FvD~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 2999899999889999999999399957749
No 248
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0013 Score=45.08 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=24.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 20123331--100378742588899997424699
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV 207 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~ 207 (647)
+|+-+|+| ..++||||||||.||--+|-.+..
T Consensus 12 L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~ 45 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQL 45 (235)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 0799647879999999998499999999999842
No 249
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.11 E-value=0.0009 Score=46.29 Aligned_cols=161 Identities=29% Similarity=0.443 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHH---HCCCCCCEECCCHHHHHH------HHHH-----CCHHHH-HHHHHH
Q ss_conf 6766420123331100378742588899997---424699702058578864------4420-----332459-999999
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAV---AGEANVPFFTISGSDFVE------LFVG-----VGASRV-RDMFEQ 235 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~---a~e~~~~f~~~~~s~~~~------~~~g-----~g~~~v-r~lf~~ 235 (647)
|+-+++ |++-|=||+.|-=||||=|.|.-+ ...+.-||+++.|+.+-| .|.- -||++- +--|++
T Consensus 13 eqvS~l-A~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTGA~~rh~GRFER 91 (349)
T TIGR02974 13 EQVSRL-APLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTGAKKRHEGRFER 91 (349)
T ss_pred HHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCEE
T ss_conf 987510-4678866886146746899998853324655488626610127825555665310010013030468898544
Q ss_pred HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--H---HCCCCCC----CCEEEEEECCCCCCCCHHHCCC
Q ss_conf 98737801206323564144557898862688988998998--5---3032357----7829999629810088333165
Q gi|254780545|r 236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV--E---MDGFESS----EGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~--~---mdg~~~~----~~v~vi~aTn~~~~lD~al~Rp 306 (647)
|-. =-+|+|||=.. +. .-.| -||= | .....++ -+|=+|||||- |. |+|-+-
T Consensus 92 AdG---GTLFLDElAta-s~-------~VQE------KLLRViEYG~fERVGG~~~l~vDVRlvaATN~-DL--P~lA~~ 151 (349)
T TIGR02974 92 ADG---GTLFLDELATA-SL-------AVQE------KLLRVIEYGEFERVGGSQTLKVDVRLVAATNA-DL--PALAAE 151 (349)
T ss_pred CCC---CCCHHHHHHCC-CH-------HHHH------HHHHHHCCCCEEECCCCCEEEECCEEEECCCC-CH--HHHHHC
T ss_conf 368---87388887142-16-------7678------66120101303301786047735136762141-36--989865
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-------------HHCCCHHHHHHH
Q ss_conf 642314100013478899999998548877732110245441-------------203798999999
Q gi|254780545|r 307 GRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARG-------------TPGFSGADLRNL 360 (647)
Q Consensus 307 gRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~-------------t~g~sgAdi~~~ 360 (647)
|+|= -|.=+|.+.==++|--...=++ |+-.||.. .+|||..-.+.|
T Consensus 152 G~FR-------aDLLDRLAFDVi~LPPLR~R~~-DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L 210 (349)
T TIGR02974 152 GRFR-------ADLLDRLAFDVITLPPLRERQE-DIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (349)
T ss_pred CCCC-------CHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8984-------0145544565507978888723-278999999999999707865511438999999
No 250
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0017 Score=44.24 Aligned_cols=30 Identities=37% Similarity=0.806 Sum_probs=24.7
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 110037874258889999742469970205
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
-+++.||||.|||.+|+.+|...++|-++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 799989999988999999999769978552
No 251
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.09 E-value=0.00068 Score=47.16 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=42.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECCCCCHHHHHHHHHHHCCCC-------CCEECCCH
Q ss_conf 698-8985288999999999874335676642012333110-037874258889999742469-------97020585
Q gi|254780545|r 146 TFK-DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL-LVGPPGTGKTLLARAVAGEAN-------VPFFTISG 214 (647)
Q Consensus 146 ~f~-dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~l-l~GppGtGKTlla~a~a~e~~-------~~f~~~~~ 214 (647)
-|+ ++.|++++. ..+|.|+|+ ...|...-|=|| |+||||+||+-|++.+-.-.. -+.+.+.+
T Consensus 48 ~F~d~~fG~e~~i---~~~V~~~k~----AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w 118 (361)
T smart00763 48 FFDHDFFGMEEAI---ERFVNYFKS----AAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CHHHHHCCCHHHH---HHHHHHHHH----HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 1101311648999---999999999----9844671256999988998877999999999999862677685599983
No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.003 Score=42.55 Aligned_cols=153 Identities=19% Similarity=0.291 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHH----CC-CCCCEECCC-----HHHHHH---------HHHHCCHHH
Q ss_conf 35676642012333110037874258889-99974----24-699702058-----578864---------442033245
Q gi|254780545|r 169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVA----GE-ANVPFFTIS-----GSDFVE---------LFVGVGASR 228 (647)
Q Consensus 169 ~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a----~e-~~~~f~~~~-----~s~~~~---------~~~g~g~~~ 228 (647)
.++-+...|-..+|-+.|+||.|.|||-. ||--| .+ -.|-|+.+. +-+-+. .+|-..+..
T Consensus 211 ~~~~~~~~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~e 290 (432)
T PRK12724 211 DSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK 290 (432)
T ss_pred CCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 74011035777762999989999888999999999999974992799952665377999999999985994599518999
Q ss_pred HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---CCEEEEEECCCCCCCCHHHCC
Q ss_conf 99999999873780120632356414455789886268898899899853032357---782999962981008833316
Q gi|254780545|r 229 VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS---EGVILIAATNRPDVLDAALLR 305 (647)
Q Consensus 229 vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~---~~v~vi~aTn~~~~lD~al~R 305 (647)
.++.+.+ ... -+||||- -|+ +.-|.++ +.+|-..++.|..+ +..+|+.||...+.|...+-|
T Consensus 291 l~~al~~--~~~-DlILIDT---AGr------S~rd~~~---~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~ 355 (432)
T PRK12724 291 FKETLAR--DGS-ELILIDT---AGY------SHRNLEQ---LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred HHHHHHH--CCC-CEEEEEC---CCC------CCCCHHH---HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 9999985--699-9999929---998------9789999---99999999863667885179999788998999999998
Q ss_pred CCCCC-CEEEECHHHHH-HHHHHHHHHHC-CCCC
Q ss_conf 56423-14100013478-89999999854-8877
Q gi|254780545|r 306 PGRFD-RQITVPNPDIV-GREHILMVHSR-NVPL 336 (647)
Q Consensus 306 pgRfd-~~i~~~~P~~~-~r~~i~~~~~~-~~~~ 336 (647)
-++++ ..+-+-.-|.. .--.||.+..+ ++|+
T Consensus 356 f~~l~~~~lIfTKLDET~s~G~ilni~~~~~~Pi 389 (432)
T PRK12724 356 YESLNYRRILLTKLDEADFLGSFLELADTYSKSF 389 (432)
T ss_pred HCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf 4269998499971227798669999999988986
No 253
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.08 E-value=0.0029 Score=42.66 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=70.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHH----------HHHH-------
Q ss_conf 66420123331--10037874258889999742469----------9702058578864----------4420-------
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVE----------LFVG------- 223 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~----------~~~g------- 223 (647)
+..+-..+++| +-+.||.|+|||.|++.++|... .+.-..+-.++.+ .|-|
T Consensus 18 L~~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiL 97 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL 97 (173)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCC
T ss_conf 54769998599999999999980999999996666679998999999933289989842089990888367775899767
Q ss_pred CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 33245999999998737801206323564144557898862688988998998530323577829999629810088333
Q gi|254780545|r 224 VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAAL 303 (647)
Q Consensus 224 ~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al 303 (647)
-|-.|=|-..++|-...|.|+++||--+ +. ..+.++.+.+.|.++- ..|..+|-.|.+++.+.
T Consensus 98 SGGQkQRvalARal~~~p~ililDEpts-------~L---D~~~e~~i~~~l~~l~----~~~~Tvi~vtH~~~~~~--- 160 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNS-------HL---DVEGERALNQAIAALK----AAGATRIVIAHRPETLA--- 160 (173)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHH---
T ss_conf 6999999999999827999999968766-------89---9899999999999786----48989999847999998---
Q ss_pred CCCCCCCCEEEEC
Q ss_conf 1656423141000
Q gi|254780545|r 304 LRPGRFDRQITVP 316 (647)
Q Consensus 304 ~RpgRfd~~i~~~ 316 (647)
+.||.+.+.
T Consensus 161 ----~aD~Iivl~ 169 (173)
T cd03246 161 ----SADRILVLE 169 (173)
T ss_pred ----HCCEEEEEE
T ss_conf ----499999993
No 254
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.07 E-value=0.0053 Score=40.74 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHH------HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HHHHHCCC
Q ss_conf 689999999999------987898888861368756523355899999999--99862488
Q gi|254780545|r 453 TTYVWMTSRLTI------LMGGRVAEEFTFGEDNVTSGAMSDIEYATKLAR--VMVTQFGF 505 (647)
Q Consensus 453 ~tk~~l~~~i~v------~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~--~mV~~~GM 505 (647)
++..++..+|.+ ++.|-+.|-+.++..+++ ..++.+|.++|. .++.+.-|
T Consensus 532 ~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~~~~~---~~~i~~a~~~a~l~~~I~~lp~ 589 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD---DEEILRAAELAGVTEFVRRHPD 589 (694)
T ss_pred CCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHCCC
T ss_conf 999999730213576771107469999841699999---9999999998197999971856
No 255
>PRK02496 adk adenylate kinase; Provisional
Probab=97.06 E-value=0.0027 Score=42.88 Aligned_cols=118 Identities=27% Similarity=0.358 Sum_probs=57.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf 31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG 261 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~ 261 (647)
+-++|.||||+||+..|+.+|...+++. +|..+++...+-.+.. .+++... ++| +|. .
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~h--is~GdllR~~~~~~s~-------lg~~i~~---~i~--------~G~-l- 59 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIPH--ISTGDILRQAITEQTP-------LGIKAQG---YVD--------SGE-L- 59 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEE--ECHHHHHHHHHHCCCH-------HHHHHHH---HHH--------CCC-C-
T ss_conf 1899979999998999999999969977--8888999999874998-------8999999---998--------799-6-
Q ss_pred CCCHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCCCHH------HCCCC-CCCCEEEECHHHHHHHHHHHH
Q ss_conf 862688988998998-53032357782999962981008833------31656-423141000134788999999
Q gi|254780545|r 262 GGNDEREQTLNQLLV-EMDGFESSEGVILIAATNRPDVLDAA------LLRPG-RFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 262 ~~~~e~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~~~~lD~a------l~Rpg-Rfd~~i~~~~P~~~~r~~i~~ 328 (647)
-. | .++++|+. .|..-....|+++= ..|-.++.| +-..| ..|..|++..|+....+.+++
T Consensus 60 vp-d---~iv~~li~~~l~~~~~~~g~ilD---GfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~ 127 (185)
T PRK02496 60 VP-D---QLVLGLVQERLQQPDAANGWILD---GFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLLA 127 (185)
T ss_pred CC-C---HHHHHHHHHHHHCCCCCCCEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC
T ss_conf 77-2---88999999998484533877886---898857889999999997056730333304999999999874
No 256
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00069 Score=47.13 Aligned_cols=51 Identities=29% Similarity=0.552 Sum_probs=38.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 31100378742588899997424699702058578864442033245999999998
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~ 237 (647)
+-+.|.|+||+|||-+.|++|...+.||+-+. ..+|...| ..|.++|++--
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~~G 53 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEEEG 53 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCH--HHHHHHHC---CCHHHHHHHHH
T ss_conf 61899717999776899999998199802246--99999979---69999999982
No 257
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0013 Score=45.14 Aligned_cols=110 Identities=23% Similarity=0.261 Sum_probs=50.2
Q ss_pred EEECCCCCHHHHHHHHHHHCCC---C--CCEECCC-----HHHHHHHHH---------HCCHHH----HHHHHHHHHHHC
Q ss_conf 1003787425888999974246---9--9702058-----578864442---------033245----999999998737
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA---N--VPFFTIS-----GSDFVELFV---------GVGASR----VRDMFEQAKNNS 240 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~---~--~~f~~~~-----~s~~~~~~~---------g~g~~~----vr~lf~~a~~~~ 240 (647)
++|.||+|+|||...--+|... + +-++... +-+-+.-|. ...+.. +++..+.++...
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREEN 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989999988999999999999769928999748875779999999999749859922775587999999999987568
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC
Q ss_conf 80120632356414455789886268898899899853032357782999962981008833316
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR 305 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R 305 (647)
--+||||- -|+. .+|+ +-+.+|-.-.+.....+-.+|+.||...+.+|.|...
T Consensus 83 ~D~IlIDT---aGr~-------~~d~--~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f 135 (173)
T cd03115 83 FDVVIVDT---AGRL-------QIDE--NLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCEEEEEC---CCCC-------CCCH--HHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 99899978---8878-------7999--9999999998644897215742465506589999998
No 258
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.06 E-value=0.0016 Score=44.47 Aligned_cols=51 Identities=35% Similarity=0.661 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHC
Q ss_conf 9889852889999999998743356766420123331--10037874258889999742
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~ 203 (647)
|+|..|.++ +|.|.- -.+..=..+|.-+|+| +|+.||||||||.||.-++.
T Consensus 2 ~~~~~~~~~-----~e~i~t-Gi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~ 54 (241)
T PRK06067 2 FSDLEGEEE-----KEIIST-GNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVW 54 (241)
T ss_pred HHHHCCCCC-----CCCCCC-CCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 346365431-----452566-87557865069977990899980799887999999999
No 259
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=97.05 E-value=0.00034 Score=49.30 Aligned_cols=212 Identities=28% Similarity=0.361 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH
Q ss_conf 2422569889852889999999998743356766420123331100378742588899997424---6997020585788
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF 217 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~ 217 (647)
......-+-|.|--.+- +++++-.+- =++.-.-|||-|-+||||=|+||||-.. ++-||+.+++..+
T Consensus 205 ~~~~~~~~~i~G~Spam---~~v~~~~~~-------vA~~nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAAL 274 (574)
T TIGR01817 205 RRRSGKEDGIVGKSPAM---RQVVDQIKV-------VARSNSTVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAAL 274 (574)
T ss_pred HHHCCCCCCCCCCCHHH---HHHHHHHHH-------HCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf 33123447401247899---999988652-------01317667850565744334442340466455788545006447
Q ss_pred H------HHHHHC-----CHHHHHH-HHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHH--HHCCCC
Q ss_conf 6------444203-----3245999-999998737801206323564144557898862688988-998998--530323
Q gi|254780545|r 218 V------ELFVGV-----GASRVRD-MFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLV--EMDGFE 282 (647)
Q Consensus 218 ~------~~~~g~-----g~~~vr~-lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~--~mdg~~ 282 (647)
- |+|..+ ||-+-|. =|+.|- -=-+|+|||=-|-+. =|- |-=.|. |+....
T Consensus 275 se~lLESELFGHEKGAFTGA~~~RkGRFElAd---GGTLFLDEIGEISPa------------FQAKLLRVLQEGEFERVG 339 (574)
T TIGR01817 275 SETLLESELFGHEKGAFTGAVAQRKGRFELAD---GGTLFLDEIGEISPA------------FQAKLLRVLQEGEFERVG 339 (574)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCCCEEECC---CCCCCCCCCCCCCHH------------HHHHHHHHHHCCCEEEEC
T ss_conf 76112454513430146888751777533027---883200001467856------------888998875210025327
Q ss_pred CCC----CEEEEEECCCCCCCCHHHCCCCCCC-------CEEEECHHHHHHHH-HH---HHHHHCCCCCCCC---CCHHH
Q ss_conf 577----8299996298100883331656423-------14100013478899-99---9998548877732---11024
Q gi|254780545|r 283 SSE----GVILIAATNRPDVLDAALLRPGRFD-------RQITVPNPDIVGRE-HI---LMVHSRNVPLAPN---VILKT 344 (647)
Q Consensus 283 ~~~----~v~vi~aTn~~~~lD~al~RpgRfd-------~~i~~~~P~~~~r~-~i---~~~~~~~~~~~~~---~d~~~ 344 (647)
++. +|=||||||| .|..|.-+ |-|= ..+-+-+|=..+|. +| -+..|++...... +.+..
T Consensus 340 G~~TlKVdVRlvaATNr--dLE~aV~~-GeFRaDLYYRinVvPl~lPPLRER~~DIP~LA~~fL~kf~~en~R~mL~~~~ 416 (574)
T TIGR01817 340 GNRTLKVDVRLVAATNR--DLEEAVAK-GEFRADLYYRINVVPLILPPLRERREDIPLLAEAFLEKFNRENGRPMLTLSP 416 (574)
T ss_pred CCEEEEEEEEEEECCCC--CHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECH
T ss_conf 87248873678861373--55889727-8973023554422234078777873116899999999876651872032267
Q ss_pred HH--HH-HHCCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 54--41-203798--99999999987645532024210456899
Q gi|254780545|r 345 IA--RG-TPGFSG--ADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 345 la--~~-t~g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
=| .. .--|-| -+|+|.+..+|.++. ...|+.+||.=
T Consensus 417 ~Ai~~Lm~c~wPGNVRELENC~eRtAtLs~---~~~It~~df~c 457 (574)
T TIGR01817 417 SAIRVLMSCKWPGNVRELENCVERTATLSR---SGTITRSDFSC 457 (574)
T ss_pred HHHHHHHCCCCCCCCEEHHHHHHHHHHHCC---CCCCCCCEEEE
T ss_conf 899897517899974004437877875416---88516423664
No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.04 E-value=0.0058 Score=40.43 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=72.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHHHHHH------HH--------CCHHHHHHHHHHH
Q ss_conf 20123331--100378742588899997424---69970205857886444------20--------3324599999999
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFVELF------VG--------VGASRVRDMFEQA 236 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf~~a 236 (647)
+|+-+-.| +||-|.||.||+-|.--+|.. .+.+.+++||-|=.+-. .| ..+..+.++++++
T Consensus 75 LGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i 154 (372)
T cd01121 75 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf 05773067179982599886889999999999863993899824567899998999858788772788435699999999
Q ss_pred HHHCCHHEEHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 87378012063235641445578988-626889889989985303235778299996298
Q gi|254780545|r 237 KNNSPCIVFVDEIDAVGRHRGIGLGG-GNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 237 ~~~~p~iifiDeida~~~~r~~~~~~-~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
.+..|.++.||-|..+-...-.+..| -..-|+-+ +.|+++-- ..+-.+++||--+.
T Consensus 155 ~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca--~~L~~~AK-~~~i~~~lVGHVTK 211 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT--AELMRFAK-ERNIPIFIVGHVTK 211 (372)
T ss_pred HHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHH--HHHHHHHH-HCCCEEEEEEEECC
T ss_conf 97199889995622020377677998789999999--99999998-61973999987626
No 261
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.03 E-value=0.0045 Score=41.23 Aligned_cols=119 Identities=34% Similarity=0.535 Sum_probs=68.6
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-------------CEECC-----CHHHHHHH----HHH--CCH
Q ss_conf 66420123331--100378742588899997424699-------------70205-----85788644----420--332
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-------------PFFTI-----SGSDFVEL----FVG--VGA 226 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-------------~f~~~-----~~s~~~~~----~~g--~g~ 226 (647)
+..+...+++| +.+.||.|+|||.|.|+++|-... .|+.- .++ +.+. |.- -|-
T Consensus 17 l~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~t-l~e~l~~p~~~~LSGG 95 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT-LREQLIYPWDDVLSGG 95 (166)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCC-HHHHHHCCCCCCCCHH
T ss_conf 944588988999999995899988999999869876998679976998799985646658875-9999636154678999
Q ss_pred HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf 45999999998737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r 227 SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 227 ~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp 306 (647)
.|=|-.+.+|--..|-|+++||--+= . ..+.++.+.++|.++ +.-+|..|.+++. ++
T Consensus 96 qkQRvalARal~~~p~iliLDEpTs~-------L---D~~~~~~l~~~l~~~-------~~Tvi~VtH~~~~-----~~- 152 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSA-------L---DEESEDRLYQLLKEL-------GITVISVGHRPSL-----WK- 152 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC-------C---CHHHHHHHHHHHHHC-------CCEEEEEECCHHH-----HH-
T ss_conf 99999999999649999997585332-------8---999999999999977-------9989999434699-----97-
Q ss_pred CCCCCEEEEC
Q ss_conf 6423141000
Q gi|254780545|r 307 GRFDRQITVP 316 (647)
Q Consensus 307 gRfd~~i~~~ 316 (647)
.+||.+.++
T Consensus 153 -~aDrvl~Ld 161 (166)
T cd03223 153 -FHDRVLDLD 161 (166)
T ss_pred -CCCEEEEEE
T ss_conf -299999991
No 262
>PRK10536 hypothetical protein; Provisional
Probab=97.02 E-value=0.0012 Score=45.45 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=19.8
Q ss_pred CEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 11003787425888999974246
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~ 205 (647)
=+...||+|||||+||-|.|-++
T Consensus 76 ivf~~GpAGTGKT~lA~a~Al~~ 98 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999875899999999999
No 263
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.98 E-value=0.0025 Score=43.08 Aligned_cols=35 Identities=37% Similarity=0.576 Sum_probs=25.4
Q ss_pred HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 642012333110--03787425888999974246997
Q gi|254780545|r 174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~ 208 (647)
.-||+-+|+|.+ +|||||+|||-|+--+|-.+..|
T Consensus 34 ~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp 70 (261)
T pfam08423 34 KLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLP 70 (261)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCH
T ss_conf 8737986677299998998887899999999994070
No 264
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.96 E-value=0.0047 Score=41.10 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=8.9
Q ss_pred CCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf 2981008833316564231410001
Q gi|254780545|r 293 TNRPDVLDAALLRPGRFDRQITVPN 317 (647)
Q Consensus 293 Tn~~~~lD~al~RpgRfd~~i~~~~ 317 (647)
|.++..+. ..||.|.|-+
T Consensus 173 TH~~~~i~-------~AD~Ii~v~m 190 (197)
T cd03278 173 THRKGTME-------AADRLYGVTM 190 (197)
T ss_pred ECCHHHHH-------HCCEEEEEEE
T ss_conf 84999998-------5899999983
No 265
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.91 E-value=0.0018 Score=44.05 Aligned_cols=188 Identities=21% Similarity=0.227 Sum_probs=93.4
Q ss_pred HHHHHHHHHHCCEEEEEEECC-EEEEEEECCCEEEEEEECCCCHHHHHHHH-----HCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 899999997099159999889-79999957980699982688279999999-----779828998568652189999999
Q gi|254780545|r 28 YSQFIKDVDAGRVRKISVIGT-HITGFYVNGESSFQTYMPLVGSKLLDKLQ-----SKDIEISSRPVNDGSPGLLSYLGS 101 (647)
Q Consensus 28 YSeFlk~Le~g~V~sV~I~~~-~i~~~~~~g~~~~~t~~p~~~~~l~~~L~-----e~~V~v~~~~~~~~s~~~~~iL~~ 101 (647)
+.=...++++..|..|.|++. .+.+.+..+. ......+..+.+....+. ..+.+++...+.....
T Consensus 12 lgpl~~ll~D~~vsDI~In~~~~v~V~~r~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~d~~-------- 82 (283)
T pfam00437 12 LIPLEALLDDPGASDIHVNPPGRVWVRFRVGG-IVLREIPDPSPAAAMRLISRIAVMAGLDISERRPPQDAR-------- 82 (283)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEEECCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEE--------
T ss_conf 62578985289987999957991899997797-899825779999999999999998299333327852577--------
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999998516--77887776766321000011242256988985288999999999874335676642012
Q gi|254780545|r 102 WFPLVLVVLVWMFLMRQIQ--GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGR 179 (647)
Q Consensus 102 ~LPliLli~i~~fl~rr~~--gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~ 179 (647)
+|+ -+. . + +.. ....+..+.+- .......+++|.+-....-+ ++.+||+.+ .+
T Consensus 83 -l~~---~g~-R--~-~i~~~p~~~g~si~IR-------k~~~~~~tl~~L~~~g~~~~---~~~~~L~~~-------v~ 137 (283)
T pfam00437 83 -LPL---GGE-R--F-RVSTPPVVAGEAFVIR-------KPSSRSLTLDDLGMTGAFDA---DIAEFLRQA-------VQ 137 (283)
T ss_pred -ECC---CCE-E--E-EEEECCCCCCCEEEEE-------CCCCCCCCHHHHCCCCCCHH---HHHHHHHHH-------HH
T ss_conf -256---883-7--9-9998752367458985-------06677899999738977859---999999999-------98
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCC---CEECCC--------HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf 3331100378742588899997424699---702058--------57886444203324599999999873780120632
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANV---PFFTIS--------GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~---~f~~~~--------~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe 248 (647)
--+.+|..||+|+|||-+.+|+..+..- .++.+- +..-+++....+.--..++++.|-...|-+|+|.|
T Consensus 138 ~~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~~~~~v~l~~~~~~~t~~~ll~~~LR~~PD~IivGE 217 (283)
T pfam00437 138 ARGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNTRLAGVTFADLLRAALRQRPDRIMVGE 217 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECC
T ss_conf 19759998899998899999999840877762787337852317988789998558876999999996388999897578
Q ss_pred H
Q ss_conf 3
Q gi|254780545|r 249 I 249 (647)
Q Consensus 249 i 249 (647)
+
T Consensus 218 i 218 (283)
T pfam00437 218 I 218 (283)
T ss_pred C
T ss_conf 6
No 266
>PRK08118 topology modulation protein; Reviewed
Probab=96.91 E-value=0.00077 Score=46.78 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=64.2
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf 31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG 261 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~ 261 (647)
+-|+..|+||.|||.||++++...|+|++.+.. .|-.-|=. ..
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-----l~w~~~w~-----------~~--------------------- 44 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-----LFWKPNWE-----------GV--------------------- 44 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-----EEECCCCC-----------CC---------------------
T ss_conf 679998899987999999999988969796443-----47668994-----------68---------------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 86268898899899853032357782999962981008833316564231410001347889999999854
Q gi|254780545|r 262 GGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 262 ~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
..+|-.+.+++++. .+.=|+=| |....+|.-+- |-|-.|.+++|-..-...+++-.++
T Consensus 45 -~~~e~~~~~~~~~~-------~~~WIidG--ny~~~~~~r~~---~aD~iI~Ld~p~~~~~~r~~kR~~~ 102 (167)
T PRK08118 45 -PKEEQRTVQNELVK-------EDEWIIDG--NYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred -CHHHHHHHHHHHHH-------CCCEEEEC--CCHHHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf -88999999999983-------89879947--71779987797---6999999859899999999999999
No 267
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.91 E-value=0.0061 Score=40.25 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=120.9
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHHHCCHHHH-HHH-----HHHHHH---HCCHHEEHHHHHHH
Q ss_conf 11003787425888999974246997-020585788644420332459-999-----999987---37801206323564
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFVGVGASRV-RDM-----FEQAKN---NSPCIVFVDEIDAV 252 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~g~g~~~v-r~l-----f~~a~~---~~p~iifiDeida~ 252 (647)
.|||+|-|||+|+-|-+.++.=+--. |-+-.||+ -+|.+|.-+ |+- .-+|-+ .---|.-|||+|-.
T Consensus 495 niLl~GDPgtaKSQlL~yv~~iaPRgvytsGkgsS----avGLTA~v~~~d~~tg~~~LEaGALVLaD~GvccIDEFDKM 570 (916)
T PTZ00111 495 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS----SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 570 (916)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCC----CCCCEEEEEECCCCCCCEEEECCCEEECCCCEEEEEHHHCC
T ss_conf 59995799601899999999728742674598654----22646899832688786898548089727987996222036
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCE--------EEEEECCCC-----------C--CCCHHHCCCCCCC
Q ss_conf 144557898862688988998998530323-57782--------999962981-----------0--0883331656423
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGV--------ILIAATNRP-----------D--VLDAALLRPGRFD 310 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v--------~vi~aTn~~-----------~--~lD~al~RpgRfd 310 (647)
- ++-...|.+-..+- -.+ ...|+ -|+||.|-. + .|.|.||- |||
T Consensus 571 ~-----------~~~rs~lhEaMEQQ-tvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~enI~lpp~LLS--RFD 636 (916)
T PTZ00111 571 H-----------NESRLSLYEVMEQQ-TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 636 (916)
T ss_pred C-----------HHHHHHHHHHHHHH-HHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHH--HHH
T ss_conf 8-----------56788999988663-123532350454120345655328655657878676764579940331--220
Q ss_pred CEEE-ECHHHHHHHHH----HHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1410-00134788999----999985488777321102454412037989999999998764553202421045689997
Q gi|254780545|r 311 RQIT-VPNPDIVGREH----ILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 311 ~~i~-~~~P~~~~r~~----i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
-.+. ++.||.+.-+. |.++++..--.+.. + ....+....-.++-.+ +.....+...+..+ |...+
T Consensus 637 LIfl~lD~~de~~Dr~IA~hIa~~~L~~hl~g~~-~------~~~~~d~~~t~~i~~e--i~~~e~~~~vid~d-~LrKY 706 (916)
T PTZ00111 637 LIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGAN-D------AFDTYDRSNTMHVEPE--ILRSEKDYNLNDLD-MLRMY 706 (916)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC-C------CCCCCCCCCCCCCCCC--CCCCCCCCCCCCHH-HHHHH
T ss_conf 4677505786566689999998766543103543-3------3333355553335631--13311234547789-99999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH--HCCCCC----CCCEEEEHHHHHHCCCHHHH
Q ss_conf 501368655676668667789999999999999850587-73234322--014555----64056400244322689999
Q gi|254780545|r 386 DKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKA-DPLHKATI--IPRGRA----LGMVMQLPEADRHSTTYVWM 458 (647)
Q Consensus 386 ~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~-~~v~kVTI--ipRg~a----lG~t~~~p~~d~~~~tk~~l 458 (647)
|.+-...-...++ -||.+.|+.+++.-- ...+.-++ ..+++. -++... ........|-.+|
T Consensus 707 --IaYAR~~i~P~LS---------eEA~~~Lv~~YV~mRk~g~~~s~l~~~~~~~ed~d~d~~~~~-s~~k~I~iTtRQL 774 (916)
T PTZ00111 707 --IKFSKLHCFPKLS---------DEAKKVITREYVKMRQGNFQTSNLDELDHAQEDDDDDLYYQS-SGTRMIYVSSRMI 774 (916)
T ss_pred --HHHHHHCCCCCCC---------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEHHHH
T ss_conf --9999854799889---------999999999999986034545542222222333333311135-6775020018999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 9999999878988888613687565233558999999999986248887667334047
Q gi|254780545|r 459 TSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEE 516 (647)
Q Consensus 459 ~~~i~v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA~~mV~~~GMs~~lG~i~~~~ 516 (647)
++-|...=| --++-+- +.+| ..|-++|.+|-+....++++...-|.+.+..
T Consensus 775 ESLIRLSEA---~ARMRLS-e~Vt---~eDaeEAIRLmK~Al~q~a~DP~TG~IDmD~ 825 (916)
T PTZ00111 775 SSIIRIAVS---LARMRLS-TFVT---KADALQAVQIVKSSTFQSLVDPTTGKIDFDQ 825 (916)
T ss_pred HHHHHHHHH---HHHHHCC-CCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 999999998---7652166-7567---8999999999999999853698888343788
No 268
>PRK04328 hypothetical protein; Provisional
Probab=96.91 E-value=0.00078 Score=46.73 Aligned_cols=29 Identities=45% Similarity=0.724 Sum_probs=22.5
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 20123331--100378742588899997424
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
+++-+|+| +|+.||||||||.||--++.+
T Consensus 17 L~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~ 47 (250)
T PRK04328 17 LYGGIPERNVVLLSGGPGTGKSIFSQQFLWN 47 (250)
T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 1599879969999828999989999999999
No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.011 Score=38.45 Aligned_cols=169 Identities=16% Similarity=0.249 Sum_probs=82.7
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCH-----HHHHHHHH---HC---CHHHHHHHHHHHHHH
Q ss_conf 33311003787425888999974246---------997020585-----78864442---03---324599999999873
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISG-----SDFVELFV---GV---GASRVRDMFEQAKNN 239 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~-----s~~~~~~~---g~---g~~~vr~lf~~a~~~ 239 (647)
-||=+.|+||.|.|||...--+|... +|-|+.+.- -+-+..|. |+ .+....++-....+.
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~ 252 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 76289998998875787999999999986267677379998078758899999999999788069857889999999972
Q ss_pred -CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCCHHHCCCCC--CCCEEEE
Q ss_conf -780120632356414455789886268898899899853032357-782999962981008833316564--2314100
Q gi|254780545|r 240 -SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPDVLDAALLRPGR--FDRQITV 315 (647)
Q Consensus 240 -~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~ 315 (647)
.--+||||- -|+ ...+.+ -+++|-.-++-...+ +-.+|+.||.....+..++-|-.. ++..| +
T Consensus 253 ~~~D~IlIDT---AGr------s~~d~~---~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I-~ 319 (388)
T PRK12723 253 KDFDLVLIDT---IGK------SPKDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVI-F 319 (388)
T ss_pred CCCCEEEEEC---CCC------CCCCHH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 4999999958---998------856899---99999999974189845999987989999999999984279998499-9
Q ss_pred CHHHHHHH-HHHHHHHH-CCCCCC---------CCC---CHHHHHHHHHCCCHHHHHHHH
Q ss_conf 01347889-99999985-488777---------321---102454412037989999999
Q gi|254780545|r 316 PNPDIVGR-EHILMVHS-RNVPLA---------PNV---ILKTIARGTPGFSGADLRNLV 361 (647)
Q Consensus 316 ~~P~~~~r-~~i~~~~~-~~~~~~---------~~~---d~~~la~~t~g~sgAdi~~~~ 361 (647)
-.-|...+ -.+|.+-. .++|++ +|+ |-+.++++.-||+-.|.+..+
T Consensus 320 TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~ 379 (388)
T PRK12723 320 TKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFI 379 (388)
T ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 832278986699999999888869993899683020338999999998487145469999
No 270
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.90 E-value=0.0076 Score=39.58 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=71.9
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCC--CCCCEECCCHHHHHHHH------HH--------CCHHHHHHHHHHH
Q ss_conf 420123331--100378742588899997424--69970205857886444------20--------3324599999999
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGE--ANVPFFTISGSDFVELF------VG--------VGASRVRDMFEQA 236 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e--~~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf~~a 236 (647)
-+|+-+-.| +||-|.||.||+.|.--+|+. .+-+.+++||-|=.+-. .| ..+..+.++.+.+
T Consensus 82 VLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i 161 (454)
T PRK11823 82 VLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATI 161 (454)
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf 21587206648995079988899999999999855995799815015789999999758888873788536899999999
Q ss_pred HHHCCHHEEHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 87378012063235641445578988-626889889989985303235778299996298
Q gi|254780545|r 237 KNNSPCIVFVDEIDAVGRHRGIGLGG-GNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 237 ~~~~p~iifiDeida~~~~r~~~~~~-~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
.+..|.++.||-|..+-...-.+.-| -..-|+-+ +.|..+-- ..+--+++||--+.
T Consensus 162 ~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a--~~L~~~AK-~~~i~~~lVGHVTK 218 (454)
T PRK11823 162 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECA--AELTRLAK-QSGIAVFLVGHVTK 218 (454)
T ss_pred HHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHH--HHHHHHHH-HCCCCEEEEEEECC
T ss_conf 86099889994311154156677899789999999--99999997-44982899997726
No 271
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.88 E-value=0.0015 Score=44.70 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=59.7
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC-------CCEECCC----HHH---HHHHHHH--CCHH---HHHH
Q ss_conf 66420123331--10037874258889999742469-------9702058----578---8644420--3324---5999
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN-------VPFFTIS----GSD---FVELFVG--VGAS---RVRD 231 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~-------~~f~~~~----~s~---~~~~~~g--~g~~---~vr~ 231 (647)
|..-...+..| .++.||.|.|||.+-|+++--+. +|....+ +.. +.....+ -|.+ +++.
T Consensus 11 ~vpndi~l~~g~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgg~~~~~~l~~ 90 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALAL 90 (162)
T ss_pred EECCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 50770260898689998998775799999999999986326775255542776402305766412000542999999999
Q ss_pred HHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99999873780120632356414455789886268898899899853032357782999962981008833
Q gi|254780545|r 232 MFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA 302 (647)
Q Consensus 232 lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~a 302 (647)
++..+..+.|+++++||+.+ |.+ ..++. .+.+.+.+. +. .+..+|.+|..++.-.-|
T Consensus 91 ~l~~~~~~~~~lillDE~~~-----Gtd----~~~~~-~l~~~i~~~--~~--~~~~~i~tTH~~eL~~la 147 (162)
T cd03227 91 ILALASLKPRPLYILDEIDR-----GLD----PRDGQ-ALAEAILEH--LV--KGAQVIVITHLPELAELA 147 (162)
T ss_pred HHHHCCCCCCCEEEECCCCC-----CCC----HHHHH-HHHHHHHHH--HH--CCCEEEEECCHHHHHHHH
T ss_conf 99854248984899636557-----999----88999-999999999--97--699899979739999998
No 272
>KOG2170 consensus
Probab=96.87 E-value=0.007 Score=39.83 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---
Q ss_conf 985288999999-9998743356766420123331100378742588899997424699702058578864442033---
Q gi|254780545|r 150 VAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG--- 225 (647)
Q Consensus 150 v~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g--- 225 (647)
+.|+.-+++.+- -+-.|+.+|. -+-|--+=|+|+|||||..-|+-+|... |-.-.-|.||.+|++.-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~---~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENL---YRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HHCHHHHHHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCCHHHHHHHHHHHH---HHCCCCCHHHHHHHHHCCCC
T ss_conf 63208799999999999862899------9987589830899875648999999998---75112562688765541599
Q ss_pred -HHHHH--------HHHHHHHHHCCHHEEHHHHHHH
Q ss_conf -24599--------9999998737801206323564
Q gi|254780545|r 226 -ASRVR--------DMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 226 -~~~vr--------~lf~~a~~~~p~iifiDeida~ 252 (647)
++.|. .+=..+++-.-+|..+||.|-+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHC
T ss_conf 767899999999999999998557754873105435
No 273
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=96.86 E-value=0.021 Score=36.34 Aligned_cols=189 Identities=29% Similarity=0.380 Sum_probs=115.7
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCE-----E-C--------------------------------CCHHHHHHHHHH
Q ss_conf 3110037874258889999742469970-----2-0--------------------------------585788644420
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPF-----F-T--------------------------------ISGSDFVELFVG 223 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f-----~-~--------------------------------~~~s~~~~~~~g 223 (647)
.||-+-|--|||||-||+|++.-.-.+- + + +.-+.|+++=+|
T Consensus 18 gGv~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~~ 97 (705)
T TIGR02031 18 GGVAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPLG 97 (705)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCC
T ss_conf 54554167773889999999985888743266201478888873234456542332047766622046505641025898
Q ss_pred CCHHHHH------------------HHHHHHHHHCC-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC-
Q ss_conf 3324599------------------99999987378-01206323564144557898862688988998998530-323-
Q gi|254780545|r 224 VGASRVR------------------DMFEQAKNNSP-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFE- 282 (647)
Q Consensus 224 ~g~~~vr------------------~lf~~a~~~~p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~- 282 (647)
+++-|+- -||..| | +++++|++.=+. +++.|.|+.-|| |..
T Consensus 98 vtedrL~G~iDve~sl~~G~~V~~~GlL~~A----~~gvlyvd~~~lld--------------~~~~n~l~~AL~~G~~~ 159 (705)
T TIGR02031 98 VTEDRLLGGIDVEESLASGQRVLQPGLLDEA----NRGVLYVDSLNLLD--------------DSLVNRLLDALDEGVVI 159 (705)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCHHHC----CCCCEECCCHHHHH--------------HHHHHHHHHHHHCCCEE
T ss_conf 7320302640020146878254407603116----89704315454110--------------68999999886549768
Q ss_pred -CCCC-------EEEEEECCCCCCCCHHH----CCCCCCCCEEEECHH-HHHHHHHHHHHH--HCCCCC--CCCCCHH--
Q ss_conf -5778-------29999629810088333----165642314100013-478899999998--548877--7321102--
Q gi|254780545|r 283 -SSEG-------VILIAATNRPDVLDAAL----LRPGRFDRQITVPNP-DIVGREHILMVH--SRNVPL--APNVILK-- 343 (647)
Q Consensus 283 -~~~~-------v~vi~aTn~~~~lD~al----~RpgRfd~~i~~~~P-~~~~r~~i~~~~--~~~~~~--~~~~d~~-- 343 (647)
.++| -+++=||-.|+--|++| += |+--+|....+ +.+.|.+|.+.. ....+- ..++|=+
T Consensus 160 vEREGiS~~~Pa~f~Liatydp~E~~~~lr~~L~D--Rla~~v~~~~~~~~~~R~~iv~~~~~F~~~~~~~~~~~~~e~~ 237 (705)
T TIGR02031 160 VEREGISVVHPAKFVLIATYDPAEGDGALREHLLD--RLALIVSLEEVASLEARVEIVRRAELFSELQEEVFEEVNDELL 237 (705)
T ss_pred EEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH--HHHHEECCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHH
T ss_conf 88656563047673036631777787766204540--3441105110257888999988998887506632011576245
Q ss_pred ----HH--HHH---HHCCCHHHHHHHH------------------HHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf ----45--441---2037989999999------------------99876455320242104568999750136
Q gi|254780545|r 344 ----TI--ARG---TPGFSGADLRNLV------------------NEAALMAARRNRRLVTMQEFEDAKDKILM 390 (647)
Q Consensus 344 ----~l--a~~---t~g~sgAdi~~~~------------------~eAa~~a~r~~~~~i~~~dl~~A~~rv~~ 390 (647)
.| ||. -.-+|-..+..|+ +-|-.+||-++|+.|+.+||..|+.=|+.
T Consensus 238 ~~~~~ie~ARe~L~~V~is~eq~~~lv~~a~~lGv~g~RAdLfa~raA~a~AAl~gR~~V~~eDL~~AV~LV~~ 311 (705)
T TIGR02031 238 LLRGQIEAARELLPQVTISAEQVKELVLTALSLGVEGHRADLFAVRAAKALAALEGRTEVEEEDLKLAVELVLL 311 (705)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 78999999998567873648999999999997388730178999999999999870724588899988772125
No 274
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0047 Score=41.12 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=24.3
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+-..+++| +-+.||.|||||.|.++++|-..
T Consensus 20 vsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 177986998999999998469999999975998
No 275
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.83 E-value=0.0033 Score=42.22 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=27.4
Q ss_pred HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 642012333110--03787425888999974246997
Q gi|254780545|r 174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~ 208 (647)
.-||+-+|.|-+ +|||||||||-|+--+|-.+..|
T Consensus 94 ~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp 130 (318)
T PRK04301 94 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLP 130 (318)
T ss_pred HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECC
T ss_conf 0547983367078886688787035667767653376
No 276
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.83 E-value=0.0032 Score=42.34 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=35.1
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC
Q ss_conf 3331100378742588899997424699702058578864442033
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g 225 (647)
-.+.|-|.|.+|+|||-+.|.+|...++||+-++ ..+|...|..
T Consensus 132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD--~~IEk~aG~s 175 (304)
T PRK08154 132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELN--REIEREAGLS 175 (304)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHCCC
T ss_conf 7784798899999888999999999598977877--9999992999
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0074 Score=39.68 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=66.3
Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC----------CEECCCHHHHHHH----------H--------
Q ss_conf 766420123331--100378742588899997424699----------7020585788644----------4--------
Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV----------PFFTISGSDFVEL----------F-------- 221 (647)
Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~----------~f~~~~~s~~~~~----------~-------- 221 (647)
-+..+-..+++| +.+.||.|+|||.|.++++|-... +.-..+..++... |
T Consensus 17 iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi 96 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96 (171)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC
T ss_conf 16771899859989999999998399999999767758974899999998859989986318999666843757799977
Q ss_pred HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 20332459999999987378012063235641445578988626889889989985303235778299996298100883
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA 301 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~ 301 (647)
.--|. +=|=....|--..|.|+.+||--+ +. ....++.+.++|.++- . +..+|-.|.+++.+
T Consensus 97 LSgGq-~Qri~lARal~~~p~illlDEpts-------~L---D~~~~~~i~~~l~~~~---~--~~Tvi~vtH~~~~~-- 158 (171)
T cd03228 97 LSGGQ-RQRIAIARALLRDPPILILDEATS-------AL---DPETEALILEALRALA---K--GKTVIVIAHRLSTI-- 158 (171)
T ss_pred CCHHH-HHHHHHHHHHHHCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHHC---C--CCEEEEEECCHHHH--
T ss_conf 44889-999999999974899899957766-------79---9899999999999980---9--99899995799999--
Q ss_pred HHCCCCCCCCEEEEC
Q ss_conf 331656423141000
Q gi|254780545|r 302 ALLRPGRFDRQITVP 316 (647)
Q Consensus 302 al~RpgRfd~~i~~~ 316 (647)
+ .+||.+.+.
T Consensus 159 ---~--~~D~v~~l~ 168 (171)
T cd03228 159 ---R--DADRIIVLD 168 (171)
T ss_pred ---H--HCCEEEEEE
T ss_conf ---7--099999981
No 278
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.0026 Score=42.94 Aligned_cols=113 Identities=19% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCEEECCCCCHHHHHHHHHHHC-------CCCCCEECCC-----HHHHHHHH---HH------CCHHHHHHHHHHHHHH
Q ss_conf 33110037874258889999742-------4699702058-----57886444---20------3324599999999873
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAG-------EANVPFFTIS-----GSDFVELF---VG------VGASRVRDMFEQAKNN 239 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~-------e~~~~f~~~~-----~s~~~~~~---~g------~g~~~vr~lf~~a~~~ 239 (647)
.|=+.|+||+|+|||...=-+|. ...|-++.+. +-+-...| .| ..+..++++. ++.
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al---~~~ 286 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKAL---EQL 286 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---HHH
T ss_conf 73699988888756769999999999972998179998376777799999999997197379847999999999---871
Q ss_pred CC-HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC
Q ss_conf 78-0120632356414455789886268898899899853032357782999962981008833316564
Q gi|254780545|r 240 SP-CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR 308 (647)
Q Consensus 240 ~p-~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR 308 (647)
+. -+||||- -|+ . ..|. +-+.||-..++....-+-.+|+.||-..+.+...+-|-++
T Consensus 287 ~~~dlILIDT---aG~------s-~~d~--~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~ 344 (412)
T PRK05703 287 ANCDLILIDT---AGR------S-QRDP--RLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSR 344 (412)
T ss_pred CCCCEEEEEC---CCC------C-CCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 5899799968---988------9-7899--9999999998624887189997598998999999998467
No 279
>pfam00406 ADK Adenylate kinase.
Probab=96.79 E-value=0.0025 Score=43.04 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=60.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf 0378742588899997424699702058578864442033---2459999999987378012063235641445578988
Q gi|254780545|r 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG---ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG 262 (647)
Q Consensus 186 l~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g---~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~ 262 (647)
|.||||+||+..|+.+|...+++.+++ .+++...+-.+ ..+++++.+.- +..|
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~--GdllR~~~~~~s~~g~~i~~~i~~G-~lvp--------------------- 56 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLST--GDLLRAEVKSGTELGKEAKEYMDKG-ELVP--------------------- 56 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHHHHCCCHHHHHHHHHHHCC-CCCC---------------------
T ss_conf 918898985999999999859906769--9999999862887999999999869-9543---------------------
Q ss_pred CCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCCHH------HCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 626889889989985-3032357782999962981008833------316564231410001347889999999
Q gi|254780545|r 263 GNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLDAA------LLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 263 ~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD~a------l~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
| -++++++.+ |..-....|+|+= ..|-.++.| +..-...|..|++..|+..-.+.++.-
T Consensus 57 --d---~i~~~l~~~~l~~~~~~~g~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R 122 (186)
T pfam00406 57 --D---EVVVGLVKERLEQNDCKNGFLLD---GFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGR 122 (186)
T ss_pred --H---HHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf --0---99999999997074554866873---798989999999999974998777999973789999999766
No 280
>PRK13808 adenylate kinase; Provisional
Probab=96.78 E-value=0.0039 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=26.8
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 110037874258889999742469970205
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
-++|.||||+||.--|+-++.+.++|-+|+
T Consensus 2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIST 31 (297)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (297)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 599978999985899999999869886758
No 281
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.78 E-value=0.0018 Score=44.19 Aligned_cols=38 Identities=24% Similarity=0.507 Sum_probs=30.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH
Q ss_conf 1003787425888999974246997020585788644420
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG 223 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g 223 (647)
|.|.|+||+|||-..|.+|...++||+-.. +.+|.-.|
T Consensus 3 I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D--~~Ie~~~G 40 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRISEVLDLQFIDMD--EEIERREG 40 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHHHHC
T ss_conf 999899999877999999998397956477--99999859
No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.76 E-value=0.0096 Score=38.85 Aligned_cols=31 Identities=35% Similarity=0.622 Sum_probs=20.5
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...+++| +.+.||.|||||-|.++++|-..
T Consensus 23 isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~ 55 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 289986998999999999869999999966999
No 283
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.75 E-value=0.0041 Score=41.55 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=24.1
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6420123331--10037874258889999742469
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+...+|+| +.+.||.|+|||.|.+++-...+
T Consensus 12 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~ 46 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 75487888998999999999989999998887610
No 284
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.74 E-value=0.00085 Score=46.45 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=26.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 100378742588899997424699702058
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTIS 213 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~ 213 (647)
+++.|++|||||.+|+++|.+.|++|+.-.
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 899918999999999999997199564154
No 285
>PRK03839 putative kinase; Provisional
Probab=96.72 E-value=0.00066 Score=47.27 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=26.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 100378742588899997424699702058
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTIS 213 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~ 213 (647)
+++.|.||||||.+|+.+|...|..+++++
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg~~~i~v~ 32 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLGYEYVNLR 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEHH
T ss_conf 999789999989999999997698798799
No 286
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.70 E-value=0.021 Score=36.44 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=24.9
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6420123331--10037874258889999742469
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+..++.+| +-+.||.|+|||.|.|+++|-..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 51 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 53078887995999999999999999999966778
No 287
>KOG3347 consensus
Probab=96.70 E-value=0.0008 Score=46.67 Aligned_cols=35 Identities=40% Similarity=0.733 Sum_probs=30.4
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 3110037874258889999742469970205857886
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
-.||+.|-||||||.||.++|...+.+++.+| +++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is--d~v 42 (176)
T KOG3347 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLV 42 (176)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCEEEHH--HHH
T ss_conf 88798679998802599999997398567455--677
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.68 E-value=0.025 Score=35.83 Aligned_cols=31 Identities=42% Similarity=0.647 Sum_probs=22.8
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+..++.+| +.|.||.|||||-|.|+++|-..
T Consensus 21 vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 078986994999989999989999999958878
No 289
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.65 E-value=0.0011 Score=45.80 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=30.9
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 33110037874258889999742469970205857886
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
+|-+++.|+.|||||.+++++|.+.++||+- |-+|.
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fie--gDd~H 38 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFID--GDDLH 38 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEC--CCCCC
T ss_conf 8579998289899899999999995987762--34437
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.64 E-value=0.0047 Score=41.06 Aligned_cols=27 Identities=41% Similarity=0.680 Sum_probs=22.1
Q ss_pred CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 123331--100378742588899997424
Q gi|254780545|r 178 GRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 178 ~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
.-+|+| +-++|||++|||.||-.+..+
T Consensus 50 GGiP~GRivei~G~essGKTtlal~~ia~ 78 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99668808999889877799999999999
No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.64 E-value=0.015 Score=37.39 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=19.9
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+...+++| +.+.||+|||||-|-+.++|-.
T Consensus 17 vsl~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~ 48 (206)
T TIGR03608 17 LNLTIEKGKMVAIVGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 07798699899998799970999999997599
No 292
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.015 Score=37.49 Aligned_cols=223 Identities=26% Similarity=0.299 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHHHCC-------------
Q ss_conf 42256988985288999999999874335676642012333110037----8742588899997424-------------
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVG----PPGTGKTLLARAVAGE------------- 204 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~G----ppGtGKTlla~a~a~e------------- 204 (647)
...-.|++..|++..+....- .++. +...=..++..+.+++ ++|.+++..++-+-.+
T Consensus 98 ~~~~~~~~~~~~k~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~ 171 (647)
T COG1067 98 GRPESFSELLGQKAEEKAEYL--SYLI----LLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPK 171 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 687225799985636788777--7666----8876224666665404553462167789988887653125310333045
Q ss_pred --------CCCCEECCCHHHHHHHHH------HCC------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf --------699702058578864442------033------245999999998737801206323564144557898862
Q gi|254780545|r 205 --------ANVPFFTISGSDFVELFV------GVG------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264 (647)
Q Consensus 205 --------~~~~f~~~~~s~~~~~~~------g~g------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~ 264 (647)
-+.||++.++..--+++. ..| -.|++- =.--++|. -++||||++-++..
T Consensus 172 ~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~p-GaVHkAng-GVLiIdei~lL~~~--------- 240 (647)
T COG1067 172 NFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKP-GAVHKANG-GVLIIDEIGLLAQP--------- 240 (647)
T ss_pred HHHHCCCCCCCCEEECCCCCHHHCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCC-CEEEEEHHHHHCCH---------
T ss_conf 56540235589679668777465361277768887667888642367-61101258-47999756632839---------
Q ss_pred HHHHHHHHHHHHHHC-C-------CCCC-----------CCEEEEEECCCCCC-----CCHHHCCCCCCCC--EEEECHH
Q ss_conf 688988998998530-3-------2357-----------78299996298100-----8833316564231--4100013
Q gi|254780545|r 265 DEREQTLNQLLVEMD-G-------FESS-----------EGVILIAATNRPDV-----LDAALLRPGRFDR--QITVPNP 318 (647)
Q Consensus 265 ~e~~~~ln~ll~~md-g-------~~~~-----------~~v~vi~aTn~~~~-----lD~al~RpgRfd~--~i~~~~P 318 (647)
..+-+|+.|- . .+.+ -...+|.+-|+-+. +|+-++. -|.. .+.-.+|
T Consensus 241 -----~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~ 313 (647)
T COG1067 241 -----LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMP 313 (647)
T ss_pred -----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHH--HCCEEEEECCCCC
T ss_conf -----899999999824456657674024861578885565489940889999765534777884--0556899768889
Q ss_pred -HHHHHHHHHHHHHCCCCCC---CCCC------HHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -4788999999985488777---3211------0245441203------7989999999998764553202421045689
Q gi|254780545|r 319 -DIVGREHILMVHSRNVPLA---PNVI------LKTIARGTPG------FSGADLRNLVNEAALMAARRNRRLVTMQEFE 382 (647)
Q Consensus 319 -~~~~r~~i~~~~~~~~~~~---~~~d------~~~la~~t~g------~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~ 382 (647)
..+.|...+..+.+-+..+ +.++ +-+.|.+..| .++.||.+++.+|+..|..++++.|+.+|++
T Consensus 314 ~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve 393 (647)
T COG1067 314 ITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVE 393 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 98689999999999999862899988889999999999986165650214899999999986688853786647699999
Q ss_pred HHHHHC
Q ss_conf 997501
Q gi|254780545|r 383 DAKDKI 388 (647)
Q Consensus 383 ~A~~rv 388 (647)
+|+.+-
T Consensus 394 ~a~~~~ 399 (647)
T COG1067 394 EALQKR 399 (647)
T ss_pred HHHHHH
T ss_conf 999874
No 293
>PRK09354 recA recombinase A; Provisional
Probab=96.64 E-value=0.0045 Score=41.25 Aligned_cols=29 Identities=48% Similarity=0.799 Sum_probs=23.0
Q ss_pred HH-CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 20-123331--100378742588899997424
Q gi|254780545|r 176 LG-GRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 176 ~g-~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
+| .-+|+| +-+|||+++|||.||-.+..+
T Consensus 52 LGiGG~P~GRivEi~G~esSGKTtlal~~iae 83 (350)
T PRK09354 52 LGIGGLPKGRIVEIYGPESSGKTTLALHAIAE 83 (350)
T ss_pred HCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 75899678708999889877799999999999
No 294
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.62 E-value=0.011 Score=38.34 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=25.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCC
Q ss_conf 0123331100378742588899997424----699702058
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTIS 213 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~ 213 (647)
|.++-.=+++.|+||.|||.++--+|-. .|.|..++|
T Consensus 15 Gl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~s 55 (186)
T pfam03796 15 GLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFS 55 (186)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98888179999679998799999999999997099668754
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0077 Score=39.55 Aligned_cols=121 Identities=33% Similarity=0.506 Sum_probs=66.0
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHH-------HHHHHH-----CCHHHHHHHHHHHHH
Q ss_conf 420123331--1003787425888999974246997--020585788-------644420-----332459999999987
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDF-------VELFVG-----VGASRVRDMFEQAKN 238 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~-------~~~~~g-----~g~~~vr~lf~~a~~ 238 (647)
..-..+++| +.+.||.|+|||.|.++++|..... -+.+.|.+. ....+| -|-.+=|-....|-.
T Consensus 17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~QLSgGqkqrv~iA~al~ 96 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11789879979999878899989999999588479962899999999979999999406087668869999999999997
Q ss_pred HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf 37801206323564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~ 315 (647)
..|-|+++||-.+ +. .-...+.+-+++.++ .. +|.-+|-+|..++.+... .|+.+.+
T Consensus 97 ~~p~ililDEPts-------gL---D~~~~~~l~~~i~~l---~~-~g~tii~vtH~~~~~~~~------~d~v~~~ 153 (157)
T cd00267 97 LNPDLLLLDEPTS-------GL---DPASRERLLELLREL---AE-EGRTVIIVTHDPELAELA------ADRVIVL 153 (157)
T ss_pred CCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHH---HH-CCCEEEEEECCHHHHHHH------CCEEEEE
T ss_conf 0999999969876-------68---999999999999999---96-899999990899999997------9999997
No 296
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.61 E-value=0.07 Score=32.60 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH-HHHHHHC
Q ss_conf 9999999987433567664201233311003787425888-9999742
Q gi|254780545|r 157 KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL-LARAVAG 203 (647)
Q Consensus 157 k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl-la~a~a~ 203 (647)
.++-.|++.+|++- -..+++.-++|+|++|||||+ |+.|++-
T Consensus 4 R~~tlel~~~l~~~-----~~~~~~~r~vL~G~~GsGKS~~L~q~v~~ 46 (274)
T pfam10236 4 REETLELTKKLKEA-----DASKKVVRFVLTGERGSGKSVLLAQAMAY 46 (274)
T ss_pred CHHHHHHHHHHHHH-----CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 15899999999874-----04799518998897997799999999999
No 297
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.60 E-value=0.015 Score=37.49 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=19.6
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+-..+++| +.+.||.|||||.|.|.++|-.
T Consensus 26 is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 26 INFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17998599699999999999999999996466
No 298
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.026 Score=35.70 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=24.8
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 6420123331--100378742588899997424
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
..+-..+++| +.+.||+|+|||.|.+.++|.
T Consensus 24 ~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~ 56 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred ECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 883889928839999999999889999998379
No 299
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.067 Score=32.74 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-------CE---------ECCCHHHHHHHH-HH--
Q ss_conf 998743356766420123331100378742588899997424699-------70---------205857886444-20--
Q gi|254780545|r 163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-------PF---------FTISGSDFVELF-VG-- 223 (647)
Q Consensus 163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-------~f---------~~~~~s~~~~~~-~g-- 223 (647)
++..|++--+ ..++|...||+| |+||+-+|+++|...-+ |. .+-+.+|+.... .|
T Consensus 10 i~~~l~~~i~----~~rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~~~~ 83 (290)
T PRK07276 10 LFQRFQTILE----QDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHH----CCCCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCC
T ss_conf 9999999998----499650542169--8687999999999981899999898988999999876999871377167775
Q ss_pred CCHHHHHHHHHHHHHH----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 3324599999999873----780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 224 VGASRVRDMFEQAKNN----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 224 ~g~~~vr~lf~~a~~~----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
.+-..||++-...... ..=|+.||+.|-+- .+.-|.||--+. +...++++|=.|+.++.+
T Consensus 84 I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt--------------~~AaNaLLK~LE--EPp~~t~~iLlt~~~~~l 147 (290)
T PRK07276 84 IKTDTIRELTANFSQSGYEGKRQVFIIKDADKMH--------------VNAANSLLKVIE--EPQSEIYIFLLTNDENKV 147 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCC--------------HHHHHHHHHHHC--CCCCCCEEEEEECCHHHC
T ss_conf 7688999999998445613782799977656529--------------999999999703--898883799887992549
Q ss_pred CHHHC-CC
Q ss_conf 83331-65
Q gi|254780545|r 300 DAALL-RP 306 (647)
Q Consensus 300 D~al~-Rp 306 (647)
=|-++ |-
T Consensus 148 LpTI~SRC 155 (290)
T PRK07276 148 LPTIKSRT 155 (290)
T ss_pred CHHHHHCC
T ss_conf 37887366
No 300
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0017 Score=44.27 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=30.1
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 1003787425888999974246997020585788644
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
|-..||||||||..|+-+|...|.||++. |.-|.+|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa-G~iFR~~ 38 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA-GTIFREM 38 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEEC-CHHHHHH
T ss_conf 99617999970279999999829715621-2799999
No 301
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.53 E-value=0.0015 Score=44.74 Aligned_cols=39 Identities=46% Similarity=0.835 Sum_probs=27.8
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHH
Q ss_conf 0123331--1003787425888999974246---9970205857
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGS 215 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s 215 (647)
++-+|+| +|++|+||||||.||..++.+. |-|.++++-.
T Consensus 17 ~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 17 GGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 68988997899993899868999999999776269858999920
No 302
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.51 E-value=0.0024 Score=43.16 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH-HHHHHCCHH-HHHHH--------
Q ss_conf 335676642012-----333110037874258889999742469970205857886-444203324-59999--------
Q gi|254780545|r 168 CDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV-ELFVGVGAS-RVRDM-------- 232 (647)
Q Consensus 168 ~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~-~~~~g~g~~-~vr~l-------- 232 (647)
+||-+|=.+=.+ .-|-|++.||.-||||.|++.+|..-+.|+..--|-+++ +.|.|.... ...|+
T Consensus 213 ~nP~~~W~~Ip~~vR~~FvKkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ~ 292 (411)
T PRK08099 213 ENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHA 292 (411)
T ss_pred HCHHHHHHHCCHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 38788888613777775436899989998888999999999978995189899999997189745688889999999999
Q ss_pred --HHHHHHHCCHHEEHHHHHHH
Q ss_conf --99998737801206323564
Q gi|254780545|r 233 --FEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 233 --f~~a~~~~p~iifiDeida~ 252 (647)
=+.|.+.|.-++|+|- |++
T Consensus 293 ~~e~~a~~~AnklLFcDT-D~l 313 (411)
T PRK08099 293 QYIDFAVKYANKVAFIDT-DFV 313 (411)
T ss_pred HHHHHHHHCCCCEEEEEC-CHH
T ss_conf 999998750597699838-499
No 303
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.51 E-value=0.0029 Score=42.66 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=40.3
Q ss_pred HHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 698-89852889999999-998743356766420123331100378742588899997424
Q gi|254780545|r 146 TFK-DVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 146 ~f~-dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
.++ .+-|+.-|++.+.. +.++|.+|.- +-|-=+-|+|||||||++.|+-||..
T Consensus 22 ~L~~~lfGQhla~~~v~~al~~~l~~~~p------~KpLVlSfHG~tGtGKn~vs~liA~~ 76 (127)
T pfam06309 22 DLARRLFGQHLVKQLVVRSVKGHWENPKP------RKPLVLSFHGWTGTGKNFVAEIIADN 76 (127)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCC------CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99875347798999999999999748999------99748870189998798999999999
No 304
>PRK13764 ATPase; Provisional
Probab=96.50 E-value=0.0014 Score=44.83 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHH-------HCCHHEEHHHHHHH
Q ss_conf 33110037874258889999742469-97020585788644420332459999999987-------37801206323564
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGVGASRVRDMFEQAKN-------NSPCIVFVDEIDAV 252 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~-------~~p~iifiDeida~ 252 (647)
-+|+|..||||.|||.||.|+|.-.. ..++.-+--+=..|.|+..-...-.|--...+ .-|--..+||+-
T Consensus 259 a~GilIaG~PGaGKsTfaqalA~~~~~~g~iVKTmEsPRDl~v~~~iTQy~~l~g~~e~t~diLlLvRPDytifDE~R-- 336 (605)
T PRK13764 259 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYTPLEGSMEETADILLLVRPDYTIFDEMR-- 336 (605)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCCCHHHHEEEEEEECCCCEEEEEHH--
T ss_conf 664999779999778999999999984797898324862366895420524356887773006788548826640020--
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH--HH
Q ss_conf 1445578988626889889989985303235778299996298100883331656423141000134788999999--98
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM--VH 330 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~--~~ 330 (647)
+.++.... .|-| |-| -.-|=|+-||+-.| |+. ||=.++++++-- .|+. +|
T Consensus 337 -~~~Df~if--aD~R----------laG---vGmvGvvHA~~~iD----AiQ---RfigRVELG~IP-----qivDTVIf 388 (605)
T PRK13764 337 -KTEDFEVF--ADMR----------LAG---VGMVGVVHATSPID----AIQ---RFIGRVELGMIP-----QIVDTVIF 388 (605)
T ss_pred -CCCCCCCE--EHHH----------HCC---CCEEEEEECCCHHH----HHH---HHHCCCHHCCCC-----HHEEEEEE
T ss_conf -43330000--1010----------005---74476885288789----999---873301105642-----14048999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 54887773211024544120379899999
Q gi|254780545|r 331 SRNVPLAPNVILKTIARGTPGFSGADLRN 359 (647)
Q Consensus 331 ~~~~~~~~~~d~~~la~~t~g~sgAdi~~ 359 (647)
.++-..+.=.+++.-.+--.|+.-+||+.
T Consensus 389 I~~G~v~kVy~l~~tVKvP~Gm~e~DLAR 417 (605)
T PRK13764 389 IKDGEVAKVYDLEFTVKVPTGMKEEDLAR 417 (605)
T ss_pred EECCEEEEEEEEEEEEECCCCCCHHHCCC
T ss_conf 80784889999888885789988455148
No 305
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.47 E-value=0.02 Score=36.55 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.0
Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 766420123331--10037874258889999742469
Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
-+..+-.++++| +-+.||.|+|||-|+++++|...
T Consensus 23 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 2402588986999999999999879999999998728
No 306
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.46 E-value=0.007 Score=39.84 Aligned_cols=103 Identities=28% Similarity=0.506 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------H------HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHH------CCCC
Q ss_conf 5698898528899999999987433------5------67664201233311003787425888999974------2469
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCD------P------QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA------GEAN 206 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~------~------~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a------~e~~ 206 (647)
.++++|+-- -.+|-.+.++|||. | +...+...+-..-+||.||.|.||++||+-|- ....
T Consensus 162 sry~~iasr--fa~ere~tl~~lksgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~s 239 (531)
T COG4650 162 SRYNAIASR--FAEEREQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFS 239 (531)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 677789999--999889999999733321585778899999999861469768646887436689999999998887537
Q ss_pred CCEECCCHHHHHHHHHHCCHH-----HHHHHHHHHH--------HHCCHHEEHHHHHHHH
Q ss_conf 970205857886444203324-----5999999998--------7378012063235641
Q gi|254780545|r 207 VPFFTISGSDFVELFVGVGAS-----RVRDMFEQAK--------NNSPCIVFVDEIDAVG 253 (647)
Q Consensus 207 ~~f~~~~~s~~~~~~~g~g~~-----~vr~lf~~a~--------~~~p~iifiDeida~~ 253 (647)
-+|..+.+..+. |.++. .|+-.|.-|+ ..-.-.+|+|||--+|
T Consensus 240 g~fvevncatlr----gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelg 295 (531)
T COG4650 240 GAFVEVNCATLR----GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELG 295 (531)
T ss_pred CCEEEEEEEEEC----CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHHHHCC
T ss_conf 862788630004----75288998764001314633455442433778657567433247
No 307
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.45 E-value=0.0044 Score=41.31 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=58.0
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHHHH
Q ss_conf 110037874258889999742469970205857886---------4442033245999999998737801206-323564
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV-DEIDAV 252 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi-Deida~ 252 (647)
-|++.|++|+|||.|-+.+.++.-.....+.|.... ..|---|..+.|.+....-+.+-+|||+ |--|.
T Consensus 16 Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~v~~~~~~~~lwD~~G~~~~~~~~~~y~~~a~~iI~VvD~td~- 94 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK- 94 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCH-
T ss_conf 8999979999889999998569986606811323799998999999985587510126899765556379999966756-
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 14455789886268898899899853032357782999962981008
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
. .-++-...++++|.+.. ..+..++++| |..|..
T Consensus 95 --~-------~~~~~~~~l~~~l~~~~--~~~~PiLiv~--NK~Dl~ 128 (173)
T cd04155 95 --K-------RLEEAGAELVELLEEEK--LAGVPVLVFA--NKQDLA 128 (173)
T ss_pred --H-------HHHHHHHHHHHHHHHHH--CCCCCEEEEE--ECCCCC
T ss_conf --8-------89999999999974130--0698389999--766677
No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.43 E-value=0.0062 Score=40.22 Aligned_cols=133 Identities=22% Similarity=0.325 Sum_probs=66.0
Q ss_pred EEECCCCCHHHHHHHHHHHC-----C--CCCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHCCH
Q ss_conf 10037874258889999742-----4--6997020585-----7886444---20------3324599999999873780
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG-----E--ANVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNSPC 242 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~-----e--~~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~p~ 242 (647)
+.|+||+|.|||...--+|. + ..|-++.+.- -+-..-| .| ..+.-++...+..+. --
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~--~d 256 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRN--KH 256 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC--CC
T ss_conf 8986688876375899999999998389837999768754789999999998759559995999999999997089--99
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHH
Q ss_conf 1206323564144557898862688988998998530323-577829999629810088333165642--3141000134
Q gi|254780545|r 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPD 319 (647)
Q Consensus 243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~ 319 (647)
+||||- -|+. ..|. -+.+.|..+.... ..+..+|+.||.+.+.|+..+-|-..+ +..|.=-+=-
T Consensus 257 lILIDT---aGrs-------~rD~---~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDE 323 (404)
T PRK06995 257 IVLIDT---VGMS-------QRDR---MVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDE 323 (404)
T ss_pred EEEEEC---CCCC-------CCCH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 999809---9989-------7688---89999999973578852899977989999999999984469998399830406
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999999985
Q gi|254780545|r 320 IVGREHILMVHS 331 (647)
Q Consensus 320 ~~~r~~i~~~~~ 331 (647)
...--.||.+-.
T Consensus 324 t~~~G~iln~~~ 335 (404)
T PRK06995 324 AASLGGALDTVI 335 (404)
T ss_pred CCCHHHHHHHHH
T ss_conf 797239999999
No 309
>PRK07261 topology modulation protein; Provisional
Probab=96.40 E-value=0.002 Score=43.80 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=61.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
|+..|+||.|||.||+.++...++|++.+.. .|.+-|-. ...
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~-----l~w~p~w~---------------------------------~~~ 44 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQ-----LHFSSNWQ---------------------------------ERD 44 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC-----EEECCCCE---------------------------------ECC
T ss_conf 9998899986899999999987979797022-----78889998---------------------------------888
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC-CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 268898899899853032357782999962981008-833316564231410001347889999999854
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL-DAALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l-D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
.+|..+.+++++.+ +.=|+= -|....+ |.-| .|-|-.|.+++|-..--..+++-+++
T Consensus 45 ~~e~~~~~~~~~~~-------~~WIiD--Gny~~~~~~~rl---~~aD~iI~Ld~p~~~~l~rvikR~l~ 102 (171)
T PRK07261 45 DDDMIADISNFLLK-------QDWIIE--GNYSNCLYEERM---AEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHHHHHHHHC-------CCEEEE--CCCCCHHHHHHH---HHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99999999999848-------987994--785124777679---77999999858499999999999999
No 310
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=96.40 E-value=0.0034 Score=42.15 Aligned_cols=175 Identities=31% Similarity=0.430 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCCCCC------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 8877767663210000------1----12422569889852889999999998743356766420123331100378742
Q gi|254780545|r 123 GARGAMGFGKSKAKLL------S----GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGT 192 (647)
Q Consensus 123 g~~~~msfGKSkAk~~------~----~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGt 192 (647)
..+..|.|-.|++-.. . .-.+.-+.+|+-|.+-.-+.++..| ..| ++-+--||..|..||
T Consensus 284 adGtvftfqesraverldr~~~~~tr~~lrtR~~~~dl~G~s~~Me~VR~~v------~lY----Ars~atVLi~GE~GT 353 (658)
T TIGR02329 284 ADGTVFTFQESRAVERLDRALRSATRNQLRTRYRLDDLLGESAAMEQVRALV------RLY----ARSAATVLIEGESGT 353 (658)
T ss_pred CCCCEEEEHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCHHHHHHHH------HHH----CCCCCEEEEECCCCC
T ss_conf 3550454022478899988621303554320345476538982138999999------852----688650675147772
Q ss_pred HHHHHHHHHHCC-----------CCCCEECCCHHHHHHHHH-----H--CC----HHH--HHHHHHHHHHHCCHHEEHHH
Q ss_conf 588899997424-----------699702058578864442-----0--33----245--99999999873780120632
Q gi|254780545|r 193 GKTLLARAVAGE-----------ANVPFFTISGSDFVELFV-----G--VG----ASR--VRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 193 GKTlla~a~a~e-----------~~~~f~~~~~s~~~~~~~-----g--~g----~~~--vr~lf~~a~~~~p~iifiDe 248 (647)
||=|.|++|-.| -..||+.|++--|-|-.. | +| +.| =--||+-|.. --+|+||
T Consensus 354 GKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~---GTLFLDE 430 (658)
T TIGR02329 354 GKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDE 430 (658)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC---CCEEEHH
T ss_conf 2899999975999874666501337884687474656888877642676665016776776122220057---9510010
Q ss_pred HHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHCC--CCCCC----CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHH
Q ss_conf 3564144557898862688988-9989985303--23577----829999629810088333165642314100013478
Q gi|254780545|r 249 IDAVGRHRGIGLGGGNDEREQT-LNQLLVEMDG--FESSE----GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIV 321 (647)
Q Consensus 249 ida~~~~r~~~~~~~~~e~~~~-ln~ll~~mdg--~~~~~----~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~ 321 (647)
|=-+= -. -|| |--.|.|=.= ..... .|=|||||.++ |+..+ --|||=+ |.=
T Consensus 431 IGEmP-------LP-----LQtRLLRVLeEreV~RvG~~~P~~VDvRvvaAth~~--L~~~v-~~GrFR~-------DLf 488 (658)
T TIGR02329 431 IGEMP-------LP-----LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA--LETAV-QQGRFRR-------DLF 488 (658)
T ss_pred HCCCC-------CH-----HHHHHHHHHHCCCEEECCCCCCCEEEEEEEECCCHH--HHHHH-HCCCCCH-------HHH
T ss_conf 03578-------61-----467777765122147617875402444343312222--58798-5788242-------289
Q ss_pred HHHHHHHHHHC
Q ss_conf 89999999854
Q gi|254780545|r 322 GREHILMVHSR 332 (647)
Q Consensus 322 ~r~~i~~~~~~ 332 (647)
-|..||++.+-
T Consensus 489 YRL~~Lri~lP 499 (658)
T TIGR02329 489 YRLSILRIDLP 499 (658)
T ss_pred HHHHHHHHCCC
T ss_conf 99999851478
No 311
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.39 E-value=0.0034 Score=42.07 Aligned_cols=185 Identities=25% Similarity=0.332 Sum_probs=102.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC-CHHEEHHHHHHH-HCCCCCCCC
Q ss_conf 100378742588899997424699702058578864442033245999999998737-801206323564-144557898
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS-PCIVFVDEIDAV-GRHRGIGLG 261 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~-p~iifiDeida~-~~~r~~~~~ 261 (647)
++|.||||+||=-.|+-|+.+.++|-+|+ | |||+.+-+.. |==.=+.+ + -..+|. ..
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HIST----------G-------DllR~~~~~~T~LG~~~k~---y~y~~~G~-LV 60 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHIST----------G-------DLLRAAVKAGTPLGKKAKE---YNYMDKGE-LV 60 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC----------H-------HHHHHHHHHCCHHHHHHHC---CCCCCCCC-CC
T ss_conf 46755989876679999998608850202----------5-------8999998707977898732---67200377-57
Q ss_pred CCCHHHHHHHHHHHH-HHCCC-CC-----CCCEEEEE---ECCCCCCCCHHHCCCCC-CCCEEEECHHH-HHHHHHHHHH
Q ss_conf 862688988998998-53032-35-----77829999---62981008833316564-23141000134-7889999999
Q gi|254780545|r 262 GGNDEREQTLNQLLV-EMDGF-ES-----SEGVILIA---ATNRPDVLDAALLRPGR-FDRQITVPNPD-IVGREHILMV 329 (647)
Q Consensus 262 ~~~~e~~~~ln~ll~-~mdg~-~~-----~~~v~vi~---aTn~~~~lD~al~RpgR-fd~~i~~~~P~-~~~r~~i~~~ 329 (647)
-| +++|+|+. .|+.- +. .+|.|+=| +-+..+.||.-|-+.|- +|..|++..|| ..=...|..-
T Consensus 61 --PD---~~v~~lv~~rl~~~~~~~~~~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR 135 (232)
T TIGR01351 61 --PD---EIVNQLVKERLQQNPDCVSLKSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGR 135 (232)
T ss_pred --CH---HHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCC
T ss_conf --78---9999999999745600011010686266388887899999999998618984178885358799999977327
Q ss_pred HHCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8548877732110245441203-798999999999876455320242104568999750136865567666866778999
Q gi|254780545|r 330 HSRNVPLAPNVILKTIARGTPG-FSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408 (647)
Q Consensus 330 ~~~~~~~~~~~d~~~la~~t~g-~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vA 408 (647)
..-. ....-.++..--=..+| .++.|... +-.+..|. +|=++++ .+|+..
T Consensus 136 ~~cp-~cG~~Yh~~f~pPk~~gG~~~cD~~~----~~~l~qR~-------DD~~evv-----------------~~RL~~ 186 (232)
T TIGR01351 136 RICP-SCGRVYHIKFNPPKVPGGENLCDDCG----GELLIQRE-------DDTEEVV-----------------KKRLEV 186 (232)
T ss_pred CCCC-CCCCEEEECCCCCCCCCCCCCCCCCC----CCEEEEEC-------CCCHHHH-----------------HHHHHH
T ss_conf 3306-77855610227886787679886445----75027706-------9988999-----------------999999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999985058
Q gi|254780545|r 409 YHEAGHAVVACHVPK 423 (647)
Q Consensus 409 yHEAGHAlva~~l~~ 423 (647)
|||---=|+.|+-..
T Consensus 187 Y~~~t~Pli~yY~~~ 201 (232)
T TIGR01351 187 YKEQTEPLIDYYRKK 201 (232)
T ss_pred HHHHCCHHHHHHHHC
T ss_conf 888520089999846
No 312
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.38 E-value=0.02 Score=36.56 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.2
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 3110037874258889999742469
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~ 206 (647)
|=+.|+||+|.|||.|++++..+-.
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~ 26 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYP 26 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8699989899999999999998486
No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.032 Score=35.02 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHC
Q ss_conf 2333110037874258889999742
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~ 203 (647)
+.|+=++|+||.|+|||..+--+|.
T Consensus 73 ~~~~vI~lvG~~G~GKTTT~AKLA~ 97 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9981899988898988999999999
No 314
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.37 E-value=0.0024 Score=43.21 Aligned_cols=52 Identities=35% Similarity=0.731 Sum_probs=33.2
Q ss_pred HHCCCCCCEE--ECCCCCHHHHHHHHHHHCCC---C--CCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 2012333110--03787425888999974246---9--97020585788644420332459999999
Q gi|254780545|r 176 LGGRIPHGVL--LVGPPGTGKTLLARAVAGEA---N--VPFFTISGSDFVELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 176 ~g~~~p~g~l--l~GppGtGKTlla~a~a~e~---~--~~f~~~~~s~~~~~~~g~g~~~vr~lf~~ 235 (647)
||+-.-+|+. +|||||||||-+|=.+|-++ | |-|+-+-| |.+..|+|+++..
T Consensus 5 LgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEG--------GLS~ER~~q~~~~ 63 (223)
T TIGR02237 5 LGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEG--------GLSPERFKQIAED 63 (223)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--------CCHHHHHHHHHHC
T ss_conf 0585120358898758998678999999999986189589996289--------8328999998630
No 315
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=96.35 E-value=0.014 Score=37.73 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 78012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 240 ~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
-|.++.|||+..+....+ .++..... .+|+.+=--...-||.+|.||.||..
T Consensus 151 p~ivvviDE~~~l~~~~~------~~~~~~~~-~~l~~iar~GRa~GihlilatQrP~~ 202 (202)
T pfam01580 151 PPIVVIVDERAELMLAAP------KDSEMRVE-GALARLARMGRAAGIHLLLATQRPGV 202 (202)
T ss_pred CCEEEEEHHHHHHHHHCC------HHHHHHHH-HHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 818986445999986555------04689999-99999999887338299998189999
No 316
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.018 Score=36.92 Aligned_cols=33 Identities=36% Similarity=0.628 Sum_probs=24.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+..+...+++| +-++||.|+|||.|.+.+.|-.
T Consensus 18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 53608998799999999899982999999996676
No 317
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.34 E-value=0.0058 Score=40.42 Aligned_cols=91 Identities=26% Similarity=0.327 Sum_probs=49.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCC-----C--CCEECCCHHHHHHHH---HHCCHHHHHHHHHH-------HHHHCC--HHE
Q ss_conf 1003787425888999974246-----9--970205857886444---20332459999999-------987378--012
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA-----N--VPFFTISGSDFVELF---VGVGASRVRDMFEQ-------AKNNSP--CIV 244 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~-----~--~~f~~~~~s~~~~~~---~g~g~~~vr~lf~~-------a~~~~p--~ii 244 (647)
++..|-||||||++|-.+..+. + ..|++.+++...-.+ .+....+.+.+|.. ..+..| .|+
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~fi~~~~~~~~~~dvv 83 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTSFINNLHKAPPHEDVV 83 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 99977799389999999999986440268208995786699999999860412001020007252316523579867789
Q ss_pred EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 063235641445578988626889889989985303
Q gi|254780545|r 245 FVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG 280 (647)
Q Consensus 245 fiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg 280 (647)
++||..=+=.+.... +. ..--|||..-|+.
T Consensus 84 ivDEAhRl~~k~~~~----~~--~~~~~ql~~i~~~ 113 (348)
T pfam09848 84 IVDEAHRLWTKSDLY----FN--FSGPNQLDEIMKR 113 (348)
T ss_pred EEEHHHHHHHCCCCC----CC--CCCHHHHHHHHHH
T ss_conf 983178665433655----67--7857999999975
No 318
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.31 E-value=0.018 Score=36.81 Aligned_cols=101 Identities=24% Similarity=0.380 Sum_probs=50.8
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
+-|.|.||.|||.||+++... | ++....+++||- |.+-..-+...+-+
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~---------------------------L----~~~~~~~~~LDG-D~~R~~l~~dlgys 52 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERK---------------------------L----FAQGISVYVLDG-DNVRHGLNKDLGFS 52 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHH---------------------------H----HHCCCCEEEECC-HHHHCCCCCCCCCC
T ss_conf 998898999999999999999---------------------------9----975997799768-87750125777989
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC---C-CCCCCEEEECHH
Q ss_conf 268898899899853032357782999962981008833316---5-642314100013
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR---P-GRFDRQITVPNP 318 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R---p-gRfd~~i~~~~P 318 (647)
-.+|. .....+.++-.+-.+.|++||+++.-|-.=.-...| + ++| ..|+|.-|
T Consensus 53 ~~~R~-~n~~r~~~lak~l~~~g~~VIvs~isp~~~~R~~~r~~~~~~~y-~EIyv~~~ 109 (157)
T pfam01583 53 EEDRT-ENIRRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKF-IEVFVDTP 109 (157)
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCE-EEEEECCC
T ss_conf 89999-99999999999984289658872157899999999986478857-99996386
No 319
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.29 E-value=0.11 Score=31.31 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=84.4
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCC
Q ss_conf 33110037874258889999742469970205857886444203324599999999873780120632356414455789
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL 260 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~ 260 (647)
|+=+|+.|.|||||+.+|-.+|...|.+-+ -++|. ||++.+..-...|. ++---.+|.- .-
T Consensus 3 ~~iiligG~sGvGKStla~~lA~rlgi~~v--isTD~-----------IRevlR~~i~~eP~-L~~Ssy~A~~-~~---- 63 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV--LSGDY-----------LREFLRPYVDDEPV-LAKSVYDAWE-FY---- 63 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEE--ECCHH-----------HHHHHHHHCCCCCC-HHHHHHHHHH-HC----
T ss_conf 479998579988789999999997499755--34347-----------99999986688740-0330467988-70----
Q ss_pred CCCCHH------HHHHHHHHHHHHCC----C-CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 886268------89889989985303----2-357782999962981008833316564231410001347889999999
Q gi|254780545|r 261 GGGNDE------REQTLNQLLVEMDG----F-ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 261 ~~~~~e------~~~~ln~ll~~mdg----~-~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
+...++ .+| .+++..-+++ . .....+|+=|.-=.|..+|.-. +.+- ..+.+-.+|.+.-++-|..
T Consensus 64 ~~~~~~~ii~Gf~~q-~~~V~~gi~avi~Ra~~eg~slIIEGVHlvP~~i~~~~-~~~~--~~~~l~i~dee~H~~Rf~~ 139 (197)
T PRK12339 64 GSMTDENIVKGYLDQ-ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-TNNI--RAFYLYIRDAELHRSRLAD 139 (197)
T ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHH-HCCE--EEEEEEECCHHHHHHHHHH
T ss_conf 896527899999999-99999999999999997399779985211778877887-6595--8999997888999999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 8548877732110245441203798999999999876-45532024210456899975013
Q gi|254780545|r 330 HSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAAL-MAARRNRRLVTMQEFEDAKDKIL 389 (647)
Q Consensus 330 ~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~-~a~r~~~~~i~~~dl~~A~~rv~ 389 (647)
-.+....+. ..++..+.-+ .|. ..++-.+ .|-+.+-+.|...++++++++++
T Consensus 140 R~~~~~~~~--p~~ry~~~f~-----~IR-~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~ 192 (197)
T PRK12339 140 RINYTHKNS--PGKRLAEHLP-----EYR-TIMDYSIADARGYNIKVIDTDNYREARNPLL 192 (197)
T ss_pred HHHHCCCCC--HHHHHHHHHH-----HHH-HHHHHHHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf 854312677--1669999899-----999-9999999988873998553772899999999
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.25 E-value=0.0041 Score=41.55 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=45.5
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH--------HHHHHHHH------HCCHHHHHHHHHHHHHHC
Q ss_conf 0123331100378742588899997424699--7020585--------78864442------033245999999998737
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG--------SDFVELFV------GVGASRVRDMFEQAKNNS 240 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~--------s~~~~~~~------g~g~~~vr~lf~~a~~~~ 240 (647)
-++--+.+|..||+|+|||-|.+|++.+..- -++.+-- +..+.+.. +.+.-...++++.|-...
T Consensus 21 ~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~~~~~~li~~aLR~~ 100 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHCCCC
T ss_conf 99859989998999998999999999613345645984153540477775688886046457865034999988736689
Q ss_pred CHHEEHHHHH
Q ss_conf 8012063235
Q gi|254780545|r 241 PCIVFVDEID 250 (647)
Q Consensus 241 p~iifiDeid 250 (647)
|-.|++-|+-
T Consensus 101 pd~iivGEiR 110 (186)
T cd01130 101 PDRIIVGEVR 110 (186)
T ss_pred CCEEECCCCC
T ss_conf 9737317568
No 321
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.23 E-value=0.005 Score=40.88 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=22.9
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 420123331--100378742588899997424
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
-+|.-.++| .|+.||||||||.||--.+.+
T Consensus 258 llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~ 289 (501)
T PRK09302 258 MCGGGFFRGSIILVSGATGTGKTLLVSKFAEA 289 (501)
T ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 72599758946999889998889999999999
No 322
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.22 E-value=0.011 Score=38.32 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=26.9
Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 766420123331--10037874258889999742469
Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
-+..+-..+|+| +-+.||.|+|||-|++++.+-..
T Consensus 36 vL~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 72 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 3105389987999999999999819999999960566
No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.22 E-value=0.0025 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=26.6
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 110037874258889999742469970205
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
-++|.||||+||+..|+-+|...+++.+++
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiSt 31 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHINM 31 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 799989999987999999999879906878
No 324
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.019 Score=36.67 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=25.2
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.....+++| +-+.||.|||||.|.++++|-..
T Consensus 22 ~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7188987998999999999579999999975999
No 325
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.19 E-value=0.0031 Score=42.43 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 3331100378742588899997424699702058578864
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
-|.=+++.|++|||||.+|+++|...++||+- |-+|-+
T Consensus 7 ~~~iiVVMGVsGsGKSTig~~LA~~l~~~fie--gDdfHp 44 (177)
T PRK11545 7 DHHIYVLMGVSGSGKSAVASAVAHQLHAAFLD--GDFLHP 44 (177)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEC--CCCCCC
T ss_conf 87599998479899999999999981998553--655589
No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.19 E-value=0.027 Score=35.66 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=26.6
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 66420123331--10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
...+-..+++| +.+.||.|+|||-|.++++|...
T Consensus 18 L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 325589986999999999998759999999986176
No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19 E-value=0.0089 Score=39.08 Aligned_cols=37 Identities=35% Similarity=0.351 Sum_probs=25.2
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHH----CCCCCCEECCC
Q ss_conf 01233311003787425888999974----24699702058
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVA----GEANVPFFTIS 213 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a----~e~~~~f~~~~ 213 (647)
|.++-.=+++.|+||+|||.|+..+| .+.|.|.+..|
T Consensus 26 Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S 66 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99998089999689986999999999999997699089997
No 328
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.019 Score=36.65 Aligned_cols=145 Identities=16% Similarity=0.291 Sum_probs=72.6
Q ss_pred CCCCEEECCCCCHHHHHH-HHHH---HCCC-CCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHC
Q ss_conf 333110037874258889-9997---4246-997020585-----7886444---20------33245999999998737
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLL-ARAV---AGEA-NVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNS 240 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTll-a~a~---a~e~-~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~ 240 (647)
-..-|-|.||.|.|||-. ||-- .++- .|.|+.+.- -+=+.-| .| ..+.-++.....-+..+
T Consensus 240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf 17179998999988899999999998616980899980663476999999999984994399688899999999876336
Q ss_pred CH-HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC--CCCEEEECH
Q ss_conf 80-120632356414455789886268898899899853032357782999962981008833316564--231410001
Q gi|254780545|r 241 PC-IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR--FDRQITVPN 317 (647)
Q Consensus 241 p~-iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~~~ 317 (647)
-| +||||- -|+ + ..|+ .-+.+|...++........+|+.||.+...+...+-|-+. +|..|.--+
T Consensus 320 ~~DLILIDT---AGR------S-~RD~--~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~idglIfTKL 387 (436)
T PRK11889 320 RVDYILIDT---AGK------N-YRAS--ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKF 387 (436)
T ss_pred CCCEEEEEC---CCC------C-CCCH--HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 888899929---898------8-4689--999999999851277716999978899899999999725799882899713
Q ss_pred HHHHHHHHHHHHHH-CCCCC
Q ss_conf 34788999999985-48877
Q gi|254780545|r 318 PDIVGREHILMVHS-RNVPL 336 (647)
Q Consensus 318 P~~~~r~~i~~~~~-~~~~~ 336 (647)
-....--.||.+.. .++|+
T Consensus 388 DET~SlG~ILNv~~~s~LPI 407 (436)
T PRK11889 388 DETASSGELLKIPAVSSAPI 407 (436)
T ss_pred CCCCCCHHHHHHHHHHCCCE
T ss_conf 25687037888998839987
No 329
>KOG0482 consensus
Probab=96.17 E-value=0.098 Score=31.55 Aligned_cols=171 Identities=28% Similarity=0.358 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEECCCCCHHHHHHHHHHHCCCCCCEECC-CHHHHHHHHHHCC
Q ss_conf 898528899999999987433567664201233--3110037874258889999742469970205-8578864442033
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP--HGVLLVGPPGTGKTLLARAVAGEANVPFFTI-SGSDFVELFVGVG 225 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p--~g~ll~GppGtGKTlla~a~a~e~~~~f~~~-~~s~~~~~~~g~g 225 (647)
.|-|.+++|..|.-.. .-.|++-..-|.|+- -.|+|.|-||.-|+-|-+.+..=+--..+.+ .||+ =||.+
T Consensus 343 EIyGheDVKKaLLLlL--VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482 343 EIYGHEDVKKALLLLL--VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred HHCCCHHHHHHHHHHH--HCCCCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCC----CCCCC
T ss_conf 6306167999999995--17888888887666253469963897133899999998507665030388877----65511
Q ss_pred HHHHHHHHH-------HHHH-HCCHHEEHHHHHHHHC-CCCCCCCCCCHHHH-HHHHHHHHHHCCCCC--CCCEEEEEEC
Q ss_conf 245999999-------9987-3780120632356414-45578988626889-889989985303235--7782999962
Q gi|254780545|r 226 ASRVRDMFE-------QAKN-NSPCIVFVDEIDAVGR-HRGIGLGGGNDERE-QTLNQLLVEMDGFES--SEGVILIAAT 293 (647)
Q Consensus 226 ~~~vr~lf~-------~a~~-~~p~iifiDeida~~~-~r~~~~~~~~~e~~-~~ln~ll~~mdg~~~--~~~v~vi~aT 293 (647)
|+-.||--. -|-- .---|.-|||+|-... .|.+ -|..-| ||+.- ---|..+ |...-++||.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA----IHEVMEQQTISI---aKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA----IHEVMEQQTISI---AKAGINTTLNARTSILAAA 489 (721)
T ss_pred HHHHCCCCCCEEEECCCEEEECCCCEEEEHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHC
T ss_conf 121137777706860663897169657612333230333579----999987654456---3420100050567766544
Q ss_pred CC----------C---CCCCHHHCCCCCCCCEE-EECHHHHHHH----HHHHHHHHCCC
Q ss_conf 98----------1---00883331656423141-0001347889----99999985488
Q gi|254780545|r 294 NR----------P---DVLDAALLRPGRFDRQI-TVPNPDIVGR----EHILMVHSRNV 334 (647)
Q Consensus 294 n~----------~---~~lD~al~RpgRfd~~i-~~~~P~~~~r----~~i~~~~~~~~ 334 (647)
|- | =.|.+|||- |||-.. -.+.||.+.- ..|.-+|..+.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~ 546 (721)
T KOG0482 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEE 546 (721)
T ss_pred CCCCCCCCCCCCHHHHCCCCHHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7433466866696673698488987--54546421268764334899877675540377
No 330
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.17 E-value=0.0091 Score=39.02 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=72.7
Q ss_pred EEECCCCCHHHHHHHHHH----HCCCCCCEECCCHHHH----HHHHHHCCHHH---HHHHHHHHH-HHCCHHEEHHHHHH
Q ss_conf 100378742588899997----4246997020585788----64442033245---999999998-73780120632356
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAV----AGEANVPFFTISGSDF----VELFVGVGASR---VRDMFEQAK-NNSPCIVFVDEIDA 251 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~----a~e~~~~f~~~~~s~~----~~~~~g~g~~~---vr~lf~~a~-~~~p~iifiDeida 251 (647)
.|..|.||+|||+.|=.. |-..|-+.+. .-..+ +..+.|..... +-+.+..=+ ...-++|+|||.--
T Consensus 3 ~litG~pGsGKS~~aV~~~i~~al~~GR~V~t-NI~gL~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~g~liViDE~~~ 81 (183)
T pfam05707 3 YLITGKPGSGKTLEAVSYHILPALKKGRKVIT-NIDGLNLERFPKVFGEDVRERLEDIGYMDPWRTYPKGALLVIDEAQT 81 (183)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCHH
T ss_conf 99935999962299999999999878998998-78653522101223444543200001222331499987999989765
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 41445578988626889889989985303235778299996298100883331656423141000134788999
Q gi|254780545|r 252 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREH 325 (647)
Q Consensus 252 ~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~ 325 (647)
+-+.|+.+.. .+ ..+.. |.+ ....|+=++-.|-.|..||+.+++ +-++++.+-..+.-+...
T Consensus 82 ~~~~r~~~~~--~~---~~i~~-l~~----HRH~G~DiiliTQ~~~~id~~ir~--lve~~~~~~r~~~~g~~~ 143 (183)
T pfam05707 82 WFPSRRGGDK--VP---PVLDA-FST----HRHLGWDIILITQNPSKIDKQIRA--LVEHHVHCRRLTALGIKG 143 (183)
T ss_pred HCCCCCCCCC--CC---HHHHH-HHH----CCCCCCEEEEEECCHHHHHHHHHH--HHCEEEEEEECCCCCCCC
T ss_conf 5488777888--83---89999-998----077882089991897997299998--614899999533468863
No 331
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.16 E-value=0.0028 Score=42.68 Aligned_cols=116 Identities=24% Similarity=0.355 Sum_probs=61.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
++|.||||+||+..|+-+|...+++.+++ .+++..- .+..+|-= -++..+ ..+|. ..
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~is~--GdllR~~--------------i~~~s~~g---~~i~~~-~~~G~-lV-- 59 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST--GDMLRAA--------------IKAGTELG---KEAKSY-MDAGE-LV-- 59 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHH--------------HHCCCHHH---HHHHHH-HHCCC-CC--
T ss_conf 99989999987999999999869917868--8999999--------------87399889---999999-97798-77--
Q ss_pred CHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCC------CHHHCCCCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf 2688988998998-53032357782999962981008------833316564-23141000134788999999
Q gi|254780545|r 264 NDEREQTLNQLLV-EMDGFESSEGVILIAATNRPDVL------DAALLRPGR-FDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 264 ~~e~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~~~~l------D~al~RpgR-fd~~i~~~~P~~~~r~~i~~ 328 (647)
.| .++++|+. .|...+...|.|+= ..|-.+ |..+..+|+ .|..|++..|+..-.+.++.
T Consensus 60 pd---~i~~~lv~~~l~~~~~~~G~IlD---GfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~ 126 (215)
T PRK00279 60 PD---EIVIGLVKERLAQPDCANGFLLD---GFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSG 126 (215)
T ss_pred CH---HHHHHHHHHHHHCCCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 88---99999999998365655707986---899987999999999986499868899996889999999861
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.16 E-value=0.04 Score=34.40 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.3
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHC----CCCCCEECCCH
Q ss_conf 012333110037874258889999742----46997020585
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAG----EANVPFFTISG 214 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~----e~~~~f~~~~~ 214 (647)
|.++-.=+++.|+||+|||.++..+|- ..|.+.+.+|.
T Consensus 9 G~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~Sl 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999981899996899999999999999999977995999933
No 333
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14 E-value=0.03 Score=35.29 Aligned_cols=34 Identities=35% Similarity=0.613 Sum_probs=26.7
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 66420123331--10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...-..+|+| +.|.||-|+|||.|.|.++|-..
T Consensus 17 l~~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 812278987997999988999879999999977858
No 334
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.14 E-value=0.05 Score=33.67 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.6
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 3110037874258889999742469
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+=++++||+|+|||-|++.+..+-.
T Consensus 8 ~livisGPSG~GK~tl~~~L~~~~p 32 (208)
T PRK00300 8 LLIVLSAPSGAGKSTLVRALLERDP 32 (208)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 3899999998899999999997299
No 335
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.12 E-value=0.05 Score=33.63 Aligned_cols=32 Identities=38% Similarity=0.731 Sum_probs=25.3
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 6420123331--1003787425888999974246
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
..+...++.| +.+.||+|+|||-|.++++|..
T Consensus 26 ~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~ 59 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ECCEEEEECCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8838899088199999899951999999985777
No 336
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.12 E-value=0.035 Score=34.81 Aligned_cols=29 Identities=41% Similarity=0.701 Sum_probs=20.6
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 20123331--100378742588899997424
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
+-..+++| +.+.||+|+|||-|.+.++|-
T Consensus 20 vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 1779859989999979995399999999629
No 337
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.11 E-value=0.047 Score=33.88 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=11.8
Q ss_pred EEECCCCCHHHHHHHHHHHC
Q ss_conf 10037874258889999742
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~ 203 (647)
+.|.||.|+|||.|.+++.+
T Consensus 25 taivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99998999999999999863
No 338
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.09 E-value=0.011 Score=38.56 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=48.0
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH---------HHHHHHHH-----HCCHHHHHHHHH
Q ss_conf 6766420123331100378742588899997424699--7020585---------78864442-----033245999999
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG---------SDFVELFV-----GVGASRVRDMFE 234 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~---------s~~~~~~~-----g~g~~~vr~lf~ 234 (647)
..|-+.-++-.+.+|..|+.|+|||-|++|++.+..- -++.+-- +..+.++. |.+.--.++|.+
T Consensus 150 ~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~~~g~~~vt~~~Ll~ 229 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKGGQGRAKVTTQDLIE 229 (332)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHH
T ss_conf 99999998648719998888988999999998358953535663140663566688889999716888866086999999
Q ss_pred HHHHHCCHHEEHHHH
Q ss_conf 998737801206323
Q gi|254780545|r 235 QAKNNSPCIVFVDEI 249 (647)
Q Consensus 235 ~a~~~~p~iifiDei 249 (647)
.|-...|--|++-|+
T Consensus 230 ~aLR~rPDRIivGEv 244 (332)
T PRK13900 230 ACLRLRPDRIIVGEL 244 (332)
T ss_pred HHHCCCCCEEEECCC
T ss_conf 975689975844555
No 339
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.07 E-value=0.032 Score=35.03 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=24.9
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+..+-.++|+| +-++||+|+|||.|++.+.+-.
T Consensus 19 L~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 22558997699999999999998999999982386
No 340
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.019 Score=36.70 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=24.5
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
...+..++|+| +-+.||+|+|||-|++.+.|-.
T Consensus 17 L~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 30568998699999999999998999999974385
No 341
>PRK04182 cytidylate kinase; Provisional
Probab=96.06 E-value=0.034 Score=34.88 Aligned_cols=29 Identities=34% Similarity=0.690 Sum_probs=26.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10037874258889999742469970205
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
|-+.||+|+|||-+|+.+|...|.+|+..
T Consensus 3 ItI~g~~GSGk~tIak~LA~~lg~~~~d~ 31 (178)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKLVSA 31 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 99958998887999999999959938721
No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.06 E-value=0.037 Score=34.64 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999986
Q gi|254780545|r 490 EYATKLARVMVT 501 (647)
Q Consensus 490 ~~AT~iA~~mV~ 501 (647)
+|--.|||.+..
T Consensus 482 rQRiaiARall~ 493 (593)
T PRK10790 482 KQLLALARVLVE 493 (593)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999955
No 343
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.03 E-value=0.0034 Score=42.13 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=21.8
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 3110037874258889999742469
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.-+.|||||.||||+||.||+.-.+
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~~ 138 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAVP 138 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5699988987678999999998689
No 344
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.023 Score=36.09 Aligned_cols=31 Identities=42% Similarity=0.700 Sum_probs=25.2
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 420123331--1003787425888999974246
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
.....+++| +-+.||+|||||.|.|+++|-.
T Consensus 18 ~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 707698899899999999983999999998599
No 345
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.088 Score=31.89 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=57.6
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf 33311003787425888999974246997020585788644420--3324599999999873780120632356414455
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG 257 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~ 257 (647)
.|+-++++||-++|||-||=++|.+.+.+.+++.-- ..|-| .|-++.- ..-++..| =..||..|-- ..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm---QvYr~mdIGTAKps---~~e~~~vp-HhliDi~~p~---e~ 71 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM---QVYRGLDIGTAKPS---LEELAGVP-HHLIDIRDPT---ES 71 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH---HHCCCCCCCCCCCC---HHHHCCCC-EEEECCCCCC---CC
T ss_conf 963799989887577899999999829928930235---53188863079999---99985899-7875456832---25
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECC
Q ss_conf 789886268898899899853032357-7829999629
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATN 294 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn 294 (647)
. +..+ -.-+.+..|+..... +.-|++|-|-
T Consensus 72 y---sa~~----f~~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 72 Y---SAAE----FQRDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred C---CHHH----HHHHHHHHHHHHHHCCCCCEEECCHH
T ss_conf 5---4999----99999999999996899879976679
No 346
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.0044 Score=41.33 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=26.2
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 10037874258889999742469970205857886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
|+..|+||||||.+++.++ +.|.+.++. ++|+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l--~el~ 34 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL--NELA 34 (180)
T ss_pred EEEECCCCCCHHHHHHHHH-HHCCCEEEH--HHHH
T ss_conf 7993799986687999999-829846619--9999
No 347
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.02 Score=36.55 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 6420123331--1003787425888999974246
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
..+-..+++| +-+.||+|+|||.|.+.+.|..
T Consensus 20 ~~inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 4629998799999999999980999999996686
No 348
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.98 E-value=0.0065 Score=40.08 Aligned_cols=128 Identities=24% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf 233311003787425888999974246-9970205857886444203324599999999873780120632356414455
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG 257 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~ 257 (647)
.-|+-++|.|+||.|||.+++.+..+. +..++.+++-+|.+ .+......... |+.++-...
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~------------~~P~y~~l~~~----~~~~~~~~~-- 71 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRT------------YHPDYDELQKA----DPKDASELT-- 71 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH------------HHHHHHHHHHC----CHHHHHHHH--
T ss_conf 698799995799888899999998753789938971358788------------77747865540----767789998--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC
Q ss_conf 7898862688988998998530323577829999629810088---33316564231410001347889999999854
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD---AALLRPGRFDRQITVPNPDIVGREHILMVHSR 332 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD---~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~ 332 (647)
+.+..+...+++... ++..-++|+=++--.++.+. ..|..-|..=..+.|..|-...+..++.-|.+
T Consensus 72 ------~~~a~~~~~~~~~~a--~~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry~~ 141 (191)
T pfam06414 72 ------QPDASRWVEKLIDYA--IERGYNIILEGTLRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRYEE 141 (191)
T ss_pred ------HHHHHHHHHHHHHHH--HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf ------999999999999999--9759998985777897999999999997899799999988999999999999985
No 349
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=95.97 E-value=0.013 Score=37.85 Aligned_cols=27 Identities=44% Similarity=0.804 Sum_probs=21.4
Q ss_pred HH-CCCCCC--EEECCCCCHHHHHHHHHHH
Q ss_conf 20-123331--1003787425888999974
Q gi|254780545|r 176 LG-GRIPHG--VLLVGPPGTGKTLLARAVA 202 (647)
Q Consensus 176 ~g-~~~p~g--~ll~GppGtGKTlla~a~a 202 (647)
+| .-+|+| +.++|||+||||.||-.+.
T Consensus 44 Lg~GGlP~GRi~ei~G~essGKTtlal~~i 73 (322)
T pfam00154 44 LGIGGLPKGRIIEIYGPESSGKTTLALHAI 73 (322)
T ss_pred HCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 758997787089998898777899999999
No 350
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.95 E-value=0.022 Score=36.23 Aligned_cols=117 Identities=31% Similarity=0.476 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC--CCCEECCCH---------HHHHHHHHHC-----
Q ss_conf 999987433567664201233311003787425888999974246--997020585---------7886444203-----
Q gi|254780545|r 161 QEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA--NVPFFTISG---------SDFVELFVGV----- 224 (647)
Q Consensus 161 ~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~--~~~f~~~~~---------s~~~~~~~g~----- 224 (647)
.+++.||-|. .. -+-..|+.|||=||||.|=|=+|... |++=+.+.| ||.-..|-|+
T Consensus 110 ~~~~~yL~d~------~~-~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~GvPQ~~v 182 (282)
T TIGR02858 110 DKILPYLVDR------NG-RVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVNGVPQLDV 182 (282)
T ss_pred HHHHHHHHCC------CC-CEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCC
T ss_conf 6668877305------89-4467888868898851048889888607854246899746998432465654588241446
Q ss_pred C--------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 3--------24599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 225 G--------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 225 g--------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
| .=+---|.-.-|..||=||-.|||= ..+| +..||.- -+.||=||+ |=|-
T Consensus 183 G~RtDVLD~CPKAEGmMM~iRSMSP~Viv~DEIG-----------r~ED-----~~Al~eA-----~naGV~~I~-TaHg 240 (282)
T TIGR02858 183 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG-----------REED-----VEALLEA-----LNAGVSVIA-TAHG 240 (282)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCEEEEECCC-----------CHHH-----HHHHHHH-----HCCCCEEEE-EECC
T ss_conf 7606751788537899999970698579981488-----------9533-----8999998-----616756887-6404
Q ss_pred CCCCHHHCCC
Q ss_conf 0088333165
Q gi|254780545|r 297 DVLDAALLRP 306 (647)
Q Consensus 297 ~~lD~al~Rp 306 (647)
..+|.=-.||
T Consensus 241 ~~~~Dl~kRP 250 (282)
T TIGR02858 241 RDLEDLKKRP 250 (282)
T ss_pred CCHHHHHCCH
T ss_conf 8812665076
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.95 E-value=0.025 Score=35.81 Aligned_cols=118 Identities=24% Similarity=0.342 Sum_probs=62.0
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf 6420123331--1003787425888999974246997--020585788644420--332459999999987378012063
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiD 247 (647)
..+-..+++| +-|.||.|+|||.|.|+++|...-. -+.+.+..-+ .|+. -|-.+-|-.+..|-...|-|+++|
T Consensus 17 ~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i-~y~~QLSgGqkqr~~la~al~~~p~iliLD 95 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEE-EEEHHCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6348998799999999899984999999984898898509999996089-987007999999999999972599899995
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf 23564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r 248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~ 315 (647)
|--+ +. .-+..+.+.++|.+.. +-++ -.|...+.++. -.||.+.+
T Consensus 96 EPt~-------~L---D~~~~~~i~~~l~~~~------~tii-~vsHd~~~~~~------~~drii~l 140 (144)
T cd03221 96 EPTN-------HL---DLESIEALEEALKEYP------GTVI-LVSHDRYFLDQ------VATKIIEL 140 (144)
T ss_pred CCCC-------CC---CHHHHHHHHHHHHHCC------CEEE-EEECCHHHHHH------HCCEEEEE
T ss_conf 7755-------58---9999999999999709------9999-99679899998------79999999
No 352
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.94 E-value=0.028 Score=35.46 Aligned_cols=31 Identities=42% Similarity=0.747 Sum_probs=20.7
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 420123331--1003787425888999974246
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
.+-..+|+| +-+.||.|+|||.|.+.++|..
T Consensus 23 ~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 148997699899999999985899999981895
No 353
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.03 Score=35.29 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 20123331--10037874258889999742469970205857
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
....+++| +-+.||.|||||+++|++.|-..-.....+|.
T Consensus 22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~ 63 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR 63 (254)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCE
T ss_conf 072898999999999998789999999957998898415789
No 354
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.061 Score=33.04 Aligned_cols=38 Identities=32% Similarity=0.624 Sum_probs=26.9
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 0123331--10037874258889999742469970205857
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
-..+++| +.+.||.|+|||-|.++++|... |...++|+
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~-~~~~~~G~ 66 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-GNVSVEGD 66 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE
T ss_conf 88980984999998999988999999837878-98751379
No 355
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.91 E-value=0.16 Score=30.04 Aligned_cols=228 Identities=21% Similarity=0.296 Sum_probs=109.0
Q ss_pred HHHHHHHHHHH-HHH------HHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 99999999987-433------5676642----012333110037874258889999742469970205857886444203
Q gi|254780545|r 156 AKEDLQEIVDF-LCD------PQKFKRL----GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 156 ~k~~~~~~v~~-l~~------~~~~~~~----g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
-|+++.+.|.. |.+ .++|.-+ -.+-|-=||+-|.+||||+.+|-.+|...|.+= +-++|.
T Consensus 226 ~~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA~RLGI~~--VIsTDs------- 296 (492)
T PRK12337 226 RRDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGGVSGTGKSVLAAELAYRLGITR--VVPTDA------- 296 (492)
T ss_pred EHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCHH-------
T ss_conf 09999999999998730388999999999973568876999607888668889999999609881--025447-------
Q ss_pred CHHHHHHHHHH--HHHHCCHHEEHHHHHHHHCCCCCCC-CCCCHHHHHH-------HHHHHHHHCCC-----CCCCCEEE
Q ss_conf 32459999999--9873780120632356414455789-8862688988-------99899853032-----35778299
Q gi|254780545|r 225 GASRVRDMFEQ--AKNNSPCIVFVDEIDAVGRHRGIGL-GGGNDEREQT-------LNQLLVEMDGF-----ESSEGVIL 289 (647)
Q Consensus 225 g~~~vr~lf~~--a~~~~p~iifiDeida~~~~r~~~~-~~~~~e~~~~-------ln~ll~~mdg~-----~~~~~v~v 289 (647)
||+++.. .++..|++ +---.+|.-.-+..+. ...+.....+ .++..+-+++. .....|||
T Consensus 297 ----IREVMR~~is~el~P~L-h~SSy~Awk~L~~~~~~~~~~~~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVI 371 (492)
T PRK12337 297 ----IREVMRAMVSKDLLPTL-HASTFNAWEALVPPGLGLPGEPTRVELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVL 371 (492)
T ss_pred ----HHHHHHHHCCHHHCCHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf ----99999984597648457-7755688886087345777786076899899999999999999999999972886799
Q ss_pred EEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH-HHH
Q ss_conf 9962981008833316564231410001347889999999854887773211024544120379899999999987-645
Q gi|254780545|r 290 IAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA-LMA 368 (647)
Q Consensus 290 i~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa-~~a 368 (647)
=|.-=.|..+..... .+-+---+.|-+||.+..++=|-.-.+........ +...+. | -.|.. +++-. ..|
T Consensus 372 EGVHLvPg~i~~~~~-e~~~vIp~mV~i~dEe~Hr~RF~~R~r~t~~~Rp~--ekYLk~---F--~eIR~-IQdyLv~rA 442 (492)
T PRK12337 372 EGVHLVPGYLQHAYQ-DGALTVPMLVALPDEEEHRRHFELRDRETAASRPL--HRYMRH---F--EEIRL-MQDHLLRLA 442 (492)
T ss_pred EEEEECHHHHHHHHC-CCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCH--HHHHHH---H--HHHHH-HHHHHHHHH
T ss_conf 833307066666641-58738999998476799999999875141036860--179997---9--99999-999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH
Q ss_conf 53202421045689997501368-655676668667789
Q gi|254780545|r 369 ARRNRRLVTMQEFEDAKDKILMG-AERRSTAMTEEEKKI 406 (647)
Q Consensus 369 ~r~~~~~i~~~dl~~A~~rv~~G-~ek~~~~~~~~ek~~ 406 (647)
-+.+-..|...||++++|+.+-= .++--..++|+++..
T Consensus 443 re~gVPVI~n~~ldesvd~~~evi~~r~~~a~~~e~~~~ 481 (492)
T PRK12337 443 REEDVPVLDGETLDESADKAVEVVLRYVMVALTPEERGQ 481 (492)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 874998207876677999999999999998459899998
No 356
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.90 E-value=0.0082 Score=39.34 Aligned_cols=139 Identities=31% Similarity=0.466 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH---
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246---9970205857886---
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV--- 218 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~--- 218 (647)
+.++|..|.+.....-..+-..+.+..|+..+.+. .|+.|..||||-|+|||+-... ..||+.+++..+-
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAP----LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~ 270 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAP----LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDA 270 (511)
T ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCC----EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
T ss_conf 12575424477873039999999999865403787----68744888618899998744384558973676447796667
Q ss_pred ---HHHH-HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCC-C---CC----C
Q ss_conf ---4442-0332459999999987378012063235641445578988626889889989985-3032-3---57----7
Q gi|254780545|r 219 ---ELFV-GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGF-E---SS----E 285 (647)
Q Consensus 219 ---~~~~-g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~-~---~~----~ 285 (647)
|+|. +.|..--.-+|++|-. --+|+|||--.-+ +-|. .||-- -||- . .. -
T Consensus 271 aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp------------~lQa--KLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 271 AESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP------------RLQA--KLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred HHHHHHCCCCCCCCCCCHHHHCCC---CEEEEEHHHHCCH------------HHHH--HHHHHHCCCCCCCCCCCCEEEE
T ss_conf 677773568887776346340269---7488500332499------------8999--9999862776000377545787
Q ss_pred CEEEEEECCCC--CCCCHHHCCCCCC
Q ss_conf 82999962981--0088333165642
Q gi|254780545|r 286 GVILIAATNRP--DVLDAALLRPGRF 309 (647)
Q Consensus 286 ~v~vi~aTn~~--~~lD~al~RpgRf 309 (647)
+|=||+||.++ +..+ .|+|
T Consensus 334 dVRVIcatq~nL~~lv~-----~g~f 354 (511)
T COG3283 334 DVRVICATQVNLVELVQ-----KGKF 354 (511)
T ss_pred EEEEEECCCCCHHHHHH-----CCCH
T ss_conf 78999616666999986-----3725
No 357
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.89 E-value=0.045 Score=33.98 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999986
Q gi|254780545|r 490 EYATKLARVMVT 501 (647)
Q Consensus 490 ~~AT~iA~~mV~ 501 (647)
+|=-.|||.++.
T Consensus 457 rQRialARAll~ 468 (569)
T PRK10789 457 KQRISIARALLL 468 (569)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999954
No 358
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.88 E-value=0.16 Score=29.96 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf 31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG 261 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~ 261 (647)
+=++|.|+-|||||.+-++++.. |.+.+ ++..++..||+..|
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~-G~qvi-------------------------------------DLEglAnHRGS~FG 169 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA-GAQVL-------------------------------------DLEGLANHRGSSFG 169 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCCCC-------------------------------------CHHHHHHCCCCCCC
T ss_conf 76998788887789999999976-99742-------------------------------------58998631465346
Q ss_pred CCCH----HHHHHHHHHHHHHCCCCCCCCEEE------EEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 8626----889889989985303235778299------99629810088333165642314100013478899999998
Q gi|254780545|r 262 GGND----EREQTLNQLLVEMDGFESSEGVIL------IAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 262 ~~~~----e~~~~ln~ll~~mdg~~~~~~v~v------i~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
+-.. -..+-=|.|..++..++....|+| ||.-.-|+.|=.++. --.+|.+..|-..=-..|++-|
T Consensus 170 ~~~~~~QPsQk~FEn~l~~~l~~~~~~~~i~vE~ES~~IG~~~iP~~l~~~M~----~a~~i~i~~~le~Rv~~l~~~Y 244 (311)
T TIGR03167 170 ALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDESRRIGRVALPDALFEAMR----AAPLVELEASLEERVERLVEEY 244 (311)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH----CCCEEEEECCHHHHHHHHHHHH
T ss_conf 88889997899999999999981788895699603313057138999999985----1998999899999999999986
No 359
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.84 E-value=0.034 Score=34.86 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=7.2
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 76668667789999
Q gi|254780545|r 396 STAMTEEEKKITAY 409 (647)
Q Consensus 396 ~~~~~~~ek~~vAy 409 (647)
+..+|--||.|+|.
T Consensus 474 G~~LSGGQrQRiai 487 (575)
T PRK11160 474 GRQLSGGEQRRLGI 487 (575)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 99599999999999
No 360
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.057 Score=33.24 Aligned_cols=35 Identities=40% Similarity=0.760 Sum_probs=28.7
Q ss_pred HHHHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 642012333110--03787425888999974246997
Q gi|254780545|r 174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 174 ~~~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~ 208 (647)
..+|.-+|+|.+ +|||+|+|||.+|--++.+|..|
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~ 87 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP 87 (279)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 7746886553589984688765466899998886537
No 361
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.82 E-value=0.023 Score=36.08 Aligned_cols=143 Identities=26% Similarity=0.432 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 2256988985288999999999-874-33567664201233311003787425888999974246997020585788644
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIV-DFL-CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v-~~l-~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
...-|.|.-|.++-.- .+++. .|| ---.+--.-|.+..--.+|.|+-|+|||-+.++++.+ ||.-+-..+
T Consensus 13 i~~l~~~~~g~~d~~~-~~~~~~~wligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~----~~~d~~~~~--- 84 (198)
T pfam05272 13 IETLFIDYLGAEDSLY-TREVSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGE----WFTDSIRSF--- 84 (198)
T ss_pred HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----HCCCCCCCC---
T ss_conf 9999999629997599-99999999999999997789767767899889867899999997377----515655576---
Q ss_pred HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCC---------CCEEEE
Q ss_conf 42033245999999998737801206323564144557898862688988998998-53032357---------782999
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-EMDGFESS---------EGVILI 290 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-~mdg~~~~---------~~v~vi 290 (647)
.=++........ -|+-+||++.+.+ + +.+ .+-++|+ .-|-|... ..-+.|
T Consensus 85 -------~~kD~~~~l~~~--wi~el~El~~~~k-~---------~~~-~lK~fls~~~d~~R~pY~~~~~~~pR~~vfi 144 (198)
T pfam05272 85 -------EGKDAYEKLQGV--WIVEIAELDGFSK-A---------EVE-AIKAFITRTVDSFRAPYGRRAESFPRQCVFV 144 (198)
T ss_pred -------CCCHHHHHHHHH--HHHHHHHHHHCCH-H---------HHH-HHHHHHCCHHHCCHHCCCCCCEECCEEEEEE
T ss_conf -------773899999987--8732598751365-3---------299-9999845413123102235640065479999
Q ss_pred EECCCCCC-CCHHHCCCCCCCCEEEEC
Q ss_conf 96298100-883331656423141000
Q gi|254780545|r 291 AATNRPDV-LDAALLRPGRFDRQITVP 316 (647)
Q Consensus 291 ~aTn~~~~-lD~al~RpgRfd~~i~~~ 316 (647)
|+||..+. -||.==| ||= .|.|+
T Consensus 145 gTtN~~~~L~D~TGnR--RF~-pi~v~ 168 (198)
T pfam05272 145 GTTNRDEFLKDPTGNR--RFW-PVKVG 168 (198)
T ss_pred EECCCCCCCCCCCCCE--EEE-EEEEC
T ss_conf 9638876557999981--689-99968
No 362
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.81 E-value=0.012 Score=38.05 Aligned_cols=105 Identities=20% Similarity=0.354 Sum_probs=53.9
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf 11003787425888999974246997020585788---------644420332459999999987378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF---------VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~---------~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
-+++.|+||+|||.|-+.+.++--.....+.|-.+ +..|---|..+.|.+...--+.+-+|||+ +|+--
T Consensus 16 KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~~a~~ii~V--vD~td 93 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV--VDSSD 93 (173)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE--EECCC
T ss_conf 8999989997889999998399989726705777899998999999996688602005899972266538999--85565
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 44557898862688988998998530323577829999629810088
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
+. .-++....+.++|.+-.. .+..++|+| |..|.-+
T Consensus 94 ~~-------~~~~~~~~l~~ll~~~~~--~~~pili~~--NK~Dl~~ 129 (173)
T cd04154 94 RL-------RLDDCKRELKELLQEERL--AGATLLILA--NKQDLPG 129 (173)
T ss_pred HH-------HHHHHHHHHHHHHHHHHC--CCCCEEEEE--ECCCCCC
T ss_conf 78-------899999999999863541--598479998--7656777
No 363
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=95.78 E-value=0.05 Score=33.68 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHCCCC-----CCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
Q ss_conf 664201233-----31100378742588899997424----699702058578864442033245999999998737801
Q gi|254780545|r 173 FKRLGGRIP-----HGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243 (647)
Q Consensus 173 ~~~~g~~~p-----~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~i 243 (647)
|+--|..+| +.+|++|-+|||||-+-+.+... -+...++=.+-+|++.|+..+-.-|=+=| -+.+|+=
T Consensus 172 i~i~glpl~k~sE~qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~~FY~p~~DiILNPf---DaRc~~W 248 (732)
T PRK13700 172 IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNPL---DARCAAW 248 (732)
T ss_pred CEECCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCEEECCH---HHCCCCC
T ss_conf 2467866676520312677468888899999999999997299589993998533976398888654820---1058987
Q ss_pred EEHHHH
Q ss_conf 206323
Q gi|254780545|r 244 VFVDEI 249 (647)
Q Consensus 244 ifiDei 249 (647)
-+++|+
T Consensus 249 s~w~E~ 254 (732)
T PRK13700 249 DLWKEC 254 (732)
T ss_pred CHHHHH
T ss_conf 557660
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.78 E-value=0.036 Score=34.71 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=17.7
Q ss_pred EEECCCCCHHHHHHHHHHHCC
Q ss_conf 100378742588899997424
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e 204 (647)
+-|.|.||.|||.||+++...
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898799999999999999999
No 365
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.77 E-value=0.0052 Score=40.77 Aligned_cols=224 Identities=24% Similarity=0.309 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
Q ss_conf 22569889852889999999998743356766420123331100378742588899997424699702058578864442
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFV 222 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~ 222 (647)
.+++.+|..=-+..|+.|.+ --+|+|..||||.|||.+|.|+|. |+.-.|- .+
T Consensus 242 vk~~ledY~L~dkl~eRL~e-----------------raeGILIAG~PGaGKsTFaqAlAe-----fy~~~Gk-iV---- 294 (604)
T COG1855 242 VKLSLEDYGLSDKLKERLEE-----------------RAEGILIAGAPGAGKSTFAQALAE-----FYASQGK-IV---- 294 (604)
T ss_pred EEEEHHHCCCCHHHHHHHHH-----------------HHCCEEEECCCCCCHHHHHHHHHH-----HHHHCCC-EE----
T ss_conf 99605542879899999886-----------------416469956999974689999999-----9986696-88----
Q ss_pred HCCHHHHHHH--HHHHHHHCCHHEEHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEECCCCCC
Q ss_conf 0332459999--99998737801206323-564144557898862688988998998530-3235778299996298100
Q gi|254780545|r 223 GVGASRVRDM--FEQAKNNSPCIVFVDEI-DAVGRHRGIGLGGGNDEREQTLNQLLVEMD-GFESSEGVILIAATNRPDV 298 (647)
Q Consensus 223 g~g~~~vr~l--f~~a~~~~p~iifiDei-da~~~~r~~~~~~~~~e~~~~ln~ll~~md-g~~~~~~v~vi~aTn~~~~ 298 (647)
- +-..=||| =...-+.+|---=..+. |.+--.|-.-. --||-..| +.|...-| .+.+-.-|=|+-||.-.|.
T Consensus 295 K-TmEsPRDl~v~~eITQYs~l~g~me~t~DiLLLvRPDYT--IyDEmR~t-~DF~vyaDmRLAGVGMVGVVHATrpIDA 370 (604)
T COG1855 295 K-TMESPRDLQVSPEITQYSPLEGDMEKTADILLLVRPDYT--IYDEMRKT-EDFQVYADLRLAGVGMVGVVHATRPIDA 370 (604)
T ss_pred E-ECCCCCCCCCCHHHHHCCCCCCCHHHHCCEEEEECCCCE--EHHHHHCC-CCEEEEEEEECCCCCEEEEEECCCHHHH
T ss_conf 6-324751356886663206445645552337999658845--10334156-6616766500115754768961780589
Q ss_pred CCHHHCCCCCCCCEEEECH-HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8833316564231410001-347889999999854887773211024544120379899999999987645532024210
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPN-PDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT 377 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~-P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~ 377 (647)
+- ||=.++++++ |..-+- -++.++-....=.+++...+--.|++-+||+. ..|.
T Consensus 371 iQ-------R~igRVELG~IPqIvDT----VIfI~~G~V~kVy~ls~tVKVP~Gm~EeDLAR--------------PVIe 425 (604)
T COG1855 371 IQ-------RFIGRVELGMIPQIVDT----VIFIKDGEVAKVYELSYTVKVPTGMTEEDLAR--------------PVIE 425 (604)
T ss_pred HH-------HHHCCEEECCCCCCEEE----EEEEECCEEEEEEEEEEEEECCCCCCHHHHCC--------------CEEE
T ss_conf 99-------86440631466412268----99981881889999999997678878677158--------------5389
Q ss_pred HHHHHHH---HHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf 4568999---7501368655676668667---78999999999999985058
Q gi|254780545|r 378 MQEFEDA---KDKILMGAERRSTAMTEEE---KKITAYHEAGHAVVACHVPK 423 (647)
Q Consensus 378 ~~dl~~A---~~rv~~G~ek~~~~~~~~e---k~~vAyHEAGHAlva~~l~~ 423 (647)
..||+.- ++-..+|-+---..+...+ .+..|+.+--.++ ..++|+
T Consensus 426 VrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~~~i-~r~~p~ 476 (604)
T COG1855 426 VRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIEREI-KRYLPG 476 (604)
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCC
T ss_conf 765036854689997164799997568777726677999999999-974799
No 366
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.75 E-value=0.023 Score=36.04 Aligned_cols=143 Identities=27% Similarity=0.486 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------H--HHHHCCCCCC--EEEC
Q ss_conf 5698898528899999999987433567---------------------------------6--6420123331--1003
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQK---------------------------------F--KRLGGRIPHG--VLLV 187 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~---------------------------------~--~~~g~~~p~g--~ll~ 187 (647)
-.|+...+--.+-..|++....++.++. + ..+.-+++.| +=..
T Consensus 283 ~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~WsqPivPk~~l~gi~F~~~aGe~laII 362 (556)
T TIGR01842 283 GGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKKWSQPIVPKPTLRGISFAIQAGEALAII 362 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCEEEEE
T ss_conf 88888999999999999999857888754578898636888776510786313578977614227862156377458887
Q ss_pred CCCCHHHHHHHHHHHCCCCCC--EECCCHHHH------------------HHHHHHCC------------------HHH-
Q ss_conf 787425888999974246997--020585788------------------64442033------------------245-
Q gi|254780545|r 188 GPPGTGKTLLARAVAGEANVP--FFTISGSDF------------------VELFVGVG------------------ASR- 228 (647)
Q Consensus 188 GppGtGKTlla~a~a~e~~~~--f~~~~~s~~------------------~~~~~g~g------------------~~~- 228 (647)
||+|+|||-|||-+-|-.-.. -+-.+|.|+ +|.|-|-= |+|
T Consensus 363 GPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAkl 442 (556)
T TIGR01842 363 GPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAKL 442 (556)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 47865258898788721013565336403344023753658801547985050767676402446887887899999976
Q ss_pred --HHHH--------------------------HHHHHH--HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --9999--------------------------999987--3780120632356414455789886268898899899853
Q gi|254780545|r 229 --VRDM--------------------------FEQAKN--NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 229 --vr~l--------------------------f~~a~~--~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
|+|| -..||+ -.||+|-+||=+| +. .+|-||-|-+=|.++
T Consensus 443 AGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNs-------NL---D~~GE~AL~~Ai~~l 512 (556)
T TIGR01842 443 AGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNS-------NL---DEEGEQALANAIKAL 512 (556)
T ss_pred HCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-------CC---CHHHHHHHHHHHHHH
T ss_conf 03035751696885443137777786146899999998717983787328898-------76---617899999999999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 03235778299996298100883
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDA 301 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~ 301 (647)
+..|+.||-.|.||..|.-
T Consensus 513 ----K~rg~tvv~itHRp~lL~~ 531 (556)
T TIGR01842 513 ----KARGITVVVITHRPSLLGL 531 (556)
T ss_pred ----HHCCCEEEEEECHHHHHHH
T ss_conf ----8679728998410689999
No 367
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.73 E-value=0.0059 Score=40.38 Aligned_cols=29 Identities=48% Similarity=0.732 Sum_probs=24.5
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 20123331--100378742588899997424
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
+-..+++| +-|.||+|||||.+-|.|||=
T Consensus 24 isl~i~~Gef~tlLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 1445448868999899888889999999677
No 368
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=95.71 E-value=0.0046 Score=41.14 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=55.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf 10037874258889999742469-----9702058578864442033245999999998737801206323564144557
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~ 258 (647)
+.|.|+.|||||..|.+++.+.+ ++| +.|-+|-- +++| +|.+-=|-.=|| .|-.
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~y--ieGDdLHP------~~Ni-------~KMs~GiPL~Dd------DR~p 59 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKY--IEGDDLHP------AANI-------EKMSRGIPLNDD------DRWP 59 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCCCC------HHHH-------HHHCCCCCCCCC------CCHH
T ss_conf 9676027862889999999985431578875--68866678------7779-------873178888701------2043
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC
Q ss_conf 89886268898899899853032357782999962981008833316
Q gi|254780545|r 259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR 305 (647)
Q Consensus 259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R 305 (647)
+=+.||.-++.+..-+...++||.| +||-|
T Consensus 60 --------WL~~l~~~~~~~~~~~~~~~~~~~C---------SALKr 89 (175)
T TIGR01313 60 --------WLKNLADALAQAAAKNKVHLVIITC---------SALKR 89 (175)
T ss_pred --------HHHHHHHHHHHHHHCCCCCCEEEEE---------ECCHH
T ss_conf --------7999999999998457745447884---------01113
No 369
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.71 E-value=0.037 Score=34.63 Aligned_cols=133 Identities=28% Similarity=0.374 Sum_probs=81.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHH---HHHHHHH----C--CHHHHHH-HHHHHHHHCCHHEEHHH
Q ss_conf 23331100378742588899997424699702058578---8644420----3--3245999-99999873780120632
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSD---FVELFVG----V--GASRVRD-MFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~---~~~~~~g----~--g~~~vr~-lf~~a~~~~p~iifiDe 248 (647)
..-|++||.|.||.|||-|-.|+|.+.|-..+-+.-|+ ++..|.. + |+-+-++ -|-.|-+.. --|.+||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHHCC-CEEEEEH
T ss_conf 528854622799866789999999974572478632011028987377887556761674246899985349-8799624
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC------------CCCCCCCEEEEEECCCC------CCCCHHHCCCCCCC
Q ss_conf 3564144557898862688988998998530------------32357782999962981------00883331656423
Q gi|254780545|r 249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMD------------GFESSEGVILIAATNRP------DVLDAALLRPGRFD 310 (647)
Q Consensus 249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~md------------g~~~~~~v~vi~aTn~~------~~lD~al~RpgRfd 310 (647)
|.- +. ..+|-.|=.++| -|+-..+..|.||-|-- ..|...++- ||-
T Consensus 1620 iNL-aS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271 1620 INL-AS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred HHH-HH-------------HHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCHHCCCCCCCCCHHHHH--HHH
T ss_conf 103-27-------------88998889988501442563113325216870554204811027985668788862--211
Q ss_pred CEEEECHHHHHHHHHHHHH
Q ss_conf 1410001347889999999
Q gi|254780545|r 311 RQITVPNPDIVGREHILMV 329 (647)
Q Consensus 311 ~~i~~~~P~~~~r~~i~~~ 329 (647)
+ |+++.-..++-..|.+.
T Consensus 1684 v-V~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271 1684 V-VKMDGLTTDDITHIANK 1701 (4600)
T ss_pred E-EEECCCCCCHHHHHHHH
T ss_conf 5-77503453009999985
No 370
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.012 Score=38.03 Aligned_cols=68 Identities=26% Similarity=0.367 Sum_probs=42.8
Q ss_pred CCCCC--EEECCCCCHHHHHHHHHHHCCCCC-----CEE--CCC-HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf 23331--100378742588899997424699-----702--058-57886444203324599999999873780120632
Q gi|254780545|r 179 RIPHG--VLLVGPPGTGKTLLARAVAGEANV-----PFF--TIS-GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 179 ~~p~g--~ll~GppGtGKTlla~a~a~e~~~-----~f~--~~~-~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDe 248 (647)
.+++| +=+.||.|||||.|.|.++|...- .+- .++ -++.+++- |-.|-|-.+..|-..-|-++++||
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~~~~~~pq~~~LS---GGqrQRv~iAral~~~p~lllLDE 97 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS---GGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCEECCCCCCCCC---HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 55899899998999999999999996886788994666686122155515079---899999999999823999999748
Q ss_pred H
Q ss_conf 3
Q gi|254780545|r 249 I 249 (647)
Q Consensus 249 i 249 (647)
-
T Consensus 98 P 98 (177)
T cd03222 98 P 98 (177)
T ss_pred C
T ss_conf 8
No 371
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.63 E-value=0.11 Score=31.14 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.8
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.+-..+++| +.|.||.|.|||.|-|+++|-..
T Consensus 23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~ 56 (293)
T COG1131 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 0499982895999989999989999999967977
No 372
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.63 E-value=0.066 Score=32.79 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=24.6
Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 766420123331--100378742588899997424
Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
-+..+-..+|+| +-+.||+|+|||-|++.+.|-
T Consensus 17 ~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~gl 51 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 25150899879999999999998599999999677
No 373
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=95.63 E-value=0.029 Score=35.32 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHHHHHH---H--------CCHHHHHHHHHHH---HHHCCHHEEH
Q ss_conf 311003787425888999974246997-02058578864442---0--------3324599999999---8737801206
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFVELFV---G--------VGASRVRDMFEQA---KNNSPCIVFV 246 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~~~~~---g--------~g~~~vr~lf~~a---~~~~p~iifi 246 (647)
.-|||.||+|.|||.|---+....-++ .-++. +.+.+.+. | -|-.|+|..|... ..++-+|||.
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~-~n~~~~~~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~~~~gIVfV 82 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQE-PSAAYKYMNNKGNSLTLIDFPGHVKLRYKLLETLKDSSSLRGLVFV 82 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCEECCCC-CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 869998689998999999997599487588867-8640687516896689998899689999999864300264499999
No 374
>KOG2543 consensus
Probab=95.60 E-value=0.15 Score=30.19 Aligned_cols=137 Identities=21% Similarity=0.288 Sum_probs=81.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH------HHHH-C------CH------HH---HHHHHHH-
Q ss_conf 23331100378742588899997424699702058578864------4420-3------32------45---9999999-
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE------LFVG-V------GA------SR---VRDMFEQ- 235 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~------~~~g-~------g~------~~---vr~lf~~- 235 (647)
..|.-+.+||-.|||||.+.+++-.+++.|+..++.-+... ...- + |. -. .-.+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66515799614787455999999860378630541577516799999999873567874055542799999999999844
Q ss_pred -HHHHC--CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC-C
Q ss_conf -98737--8012063235641445578988626889889989985303235778299996298100883331656423-1
Q gi|254780545|r 236 -AKNNS--PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD-R 311 (647)
Q Consensus 236 -a~~~~--p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd-~ 311 (647)
|..+. --.|++|-+|++.. .+ ...+++|+.--.-...+.-+|+.-++-.+ +.=+.|-|-++ -
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD---~~--------a~ll~~l~~L~el~~~~~i~iils~~~~e---~~y~~n~g~~~i~ 173 (438)
T KOG2543 108 PAATNRDQKVFLILDNADALRD---MD--------AILLQCLFRLYELLNEPTIVIILSAPSCE---KQYLINTGTLEIV 173 (438)
T ss_pred HHHHCCCCEEEEEECCHHHHHC---CC--------HHHHHHHHHHHHHHCCCCEEEEEECCCCH---HHHHCCCCCCCCE
T ss_conf 7764467449999747776630---65--------07889999899873777369998326667---7752146777864
Q ss_pred EEEECHHHHHHHHHHHHH
Q ss_conf 410001347889999999
Q gi|254780545|r 312 QITVPNPDIVGREHILMV 329 (647)
Q Consensus 312 ~i~~~~P~~~~r~~i~~~ 329 (647)
.+++|-++.++-..|+..
T Consensus 174 ~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543 174 VLHFPQYSVEETQVILSR 191 (438)
T ss_pred EEECCCCCHHHHHHHHHC
T ss_conf 785387788999999841
No 375
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.58 E-value=0.043 Score=34.13 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=25.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+..+-.++++| +-+.||.|+|||.|.+.+.|-.
T Consensus 20 L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 53459998799999999999985999999996725
No 376
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.0083 Score=39.30 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCC---CEEC-----CC-HHHHHHHHHHC-------------CHHHHHHHHHHHHHH
Q ss_conf 31100378742588899997424699---7020-----58-57886444203-------------324599999999873
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANV---PFFT-----IS-GSDFVELFVGV-------------GASRVRDMFEQAKNN 239 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~---~f~~-----~~-~s~~~~~~~g~-------------g~~~vr~lf~~a~~~ 239 (647)
-..|+.||||||||.|-|-+|.-... .|.. +. -|++--...|+ ++-+-.-+....|..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 24699659988707799999998631511267732899715004303435886032322101046561788899999954
Q ss_pred CCHHEEHHHHH
Q ss_conf 78012063235
Q gi|254780545|r 240 SPCIVFVDEID 250 (647)
Q Consensus 240 ~p~iifiDeid 250 (647)
+|-++.+|||-
T Consensus 218 ~PEViIvDEIG 228 (308)
T COG3854 218 SPEVIIVDEIG 228 (308)
T ss_pred CCCEEEEECCC
T ss_conf 99579983436
No 377
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=95.52 E-value=0.024 Score=36.00 Aligned_cols=121 Identities=23% Similarity=0.312 Sum_probs=64.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH-HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf 1003787425888999974246997020585788-644420332459999999987378012063235641445578988
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF-VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG 262 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~-~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~ 262 (647)
.|++||.|+|||-+|-++|.+.|.|.++..--++ .++-+|.|---.-+|.. --=|++|+ |.-. .
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~El~g------T~RiYL~~-------R~l~--~ 68 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPAELQG------TRRIYLDN-------RPLS--E 68 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHCC------CCEEEECC-------CCCC--C
T ss_conf 8997887777169999999995997796203443001136778999799657------52698616-------7343--4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC----CCCCCC-EEEECHHHHHH
Q ss_conf 6268898899899853032357782999962981008833316----564231-41000134788
Q gi|254780545|r 263 GNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR----PGRFDR-QITVPNPDIVG 322 (647)
Q Consensus 263 ~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R----pgRfd~-~i~~~~P~~~~ 322 (647)
|+-.-++....|+.+.+......|||+=|-. ...| .++.+ .-+|-- ...+.+||.+.
T Consensus 69 Gii~a~eA~~~Li~~V~~~~~~~glILEGGS--ISLl-~~ma~~~~w~~~f~w~v~r~~l~d~~~ 130 (232)
T pfam01745 69 GIIDAEEAHDRLIAEVTSHKDEGGVILEGGS--ISLL-KRMAQSPYWNAGFPWHVKRMRLPDRDV 130 (232)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCH--HHHH-HHHHHCHHHCCCCEEEEEEEECCCHHH
T ss_conf 6648899999999999604667866872750--9999-999757341489648999974798789
No 378
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.51 E-value=0.074 Score=32.44 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=52.0
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf 23331100378742588899997424699702058578864442033245999999998737801206323564144557
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~ 258 (647)
.-|.=+-|.|.||.|||.||+++... |+ +....+++||- |.+-..-+.
T Consensus 22 ~kg~viWlTGLSGSGKTTlA~~L~~~---------------------------L~----~~~~~~~~LDG-D~lR~~l~~ 69 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA---------------------------LH----ELGVHTYLLDG-DNVRHGLCS 69 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH---------------------------HH----HCCCCEEEECH-HHHHHHHCC
T ss_conf 99869998799999889999999999---------------------------99----75997599777-999874366
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC----CCCCCEEEECHHH
Q ss_conf 898862688988998998530323577829999629810088333165----6423141000134
Q gi|254780545|r 259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP----GRFDRQITVPNPD 319 (647)
Q Consensus 259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp----gRfd~~i~~~~P~ 319 (647)
..+-+-.+|..- ..-+.++-.+-.+.|++||+++--|-.-+-...|- ++| ..|++.-|=
T Consensus 70 dlgfs~~dR~~n-~~r~~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~~~~~f-~EIyl~~~l 132 (198)
T PRK03846 70 DLGFSDADRKEN-IRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEF-IEVFVDTPL 132 (198)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCE-EEEEECCCH
T ss_conf 789899999999-999999999998589836641478879999999986787757-999943889
No 379
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.49 E-value=0.073 Score=32.47 Aligned_cols=13 Identities=23% Similarity=0.031 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999899999999
Q gi|254780545|r 559 IIQEKNDNFVAIA 571 (647)
Q Consensus 559 iL~~n~~~l~~la 571 (647)
|+-.||-..-+-|
T Consensus 524 iiIaHRlsti~~a 536 (585)
T PRK13657 524 FIIAHRLSTVRNA 536 (585)
T ss_pred EEEECCHHHHHHC
T ss_conf 9960688889969
No 380
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=95.49 E-value=0.22 Score=28.96 Aligned_cols=141 Identities=23% Similarity=0.357 Sum_probs=91.7
Q ss_pred HCC-CCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 012-33311003787425888999974246-----997020585788644420332459999999987378012063235
Q gi|254780545|r 177 GGR-IPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 177 g~~-~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeid 250 (647)
.++ .-.-+++||-.|.|||.+..++.+.. ....++++...|..-++-.-...-.+-|..-.+.. -.+.+|++.
T Consensus 176 p~~p~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~l~dd~~ 254 (493)
T TIGR00362 176 PGKPAYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNKLDDFKKKYRSL-DFLLIDDIQ 254 (493)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHH
T ss_conf 7876656247744754215678777643444306773278850146789999875200168888876311-123111047
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC---CCCHHHCCCCCCC--CEEEECHHHHHHHHH
Q ss_conf 64144557898862688988998998530323577829999629810---0883331656423--141000134788999
Q gi|254780545|r 251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD---VLDAALLRPGRFD--RQITVPNPDIVGREH 325 (647)
Q Consensus 251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~---~lD~al~RpgRfd--~~i~~~~P~~~~r~~ 325 (647)
-+..+... ..|--.+.|.|. ..+.. +++.....|. .+...|.- ||. ....+..||.+.|..
T Consensus 255 ~~~~~~~~-----~~~~~~~~~~l~------~~~~~-~~~~~d~~p~~~~~~~~~l~~--~~~~g~~~~~~~p~~~~~~~ 320 (493)
T TIGR00362 255 FLAGKEKT-----QEEFFHTFNALH------EDGKQ-IVLTSDRSPKEIPGLEDRLKS--RFGWGLTADIEPPDLETRLA 320 (493)
T ss_pred HHHCCCCH-----HHHHHHHHHHHH------HCCCE-EEEECCCCCCHHCHHHHHHHH--HHHCCCEEECCCCCHHHHHH
T ss_conf 64135203-----688888888774------06852-788516662010004677765--43014100024652357899
Q ss_pred HHHHHHC
Q ss_conf 9999854
Q gi|254780545|r 326 ILMVHSR 332 (647)
Q Consensus 326 i~~~~~~ 332 (647)
|+.....
T Consensus 321 ~~~~~~~ 327 (493)
T TIGR00362 321 ILKKKAE 327 (493)
T ss_pred HHHHHHH
T ss_conf 9886544
No 381
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.46 E-value=0.066 Score=32.81 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=7.6
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 76668667789999
Q gi|254780545|r 396 STAMTEEEKKITAY 409 (647)
Q Consensus 396 ~~~~~~~ek~~vAy 409 (647)
+..+|--+|.++|.
T Consensus 483 G~~LSGGQrQRiai 496 (588)
T PRK11174 483 AAGLSVGQAQRLAL 496 (588)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 88779999999999
No 382
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.11 Score=31.06 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCC-----CCC---------EECCCHHHHHHHHHH---CCHHHHHHHHHHHHH---
Q ss_conf 233311003787425888999974246-----997---------020585788644420---332459999999987---
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEA-----NVP---------FFTISGSDFVELFVG---VGASRVRDMFEQAKN--- 238 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~---------f~~~~~s~~~~~~~g---~g~~~vr~lf~~a~~--- 238 (647)
..|..+||.|++||||-=++.++|... .-| +..-+.+||...+-. .+-..+|++-...-.
T Consensus 6 n~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~ 85 (262)
T PRK05818 6 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 85 (262)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 89850566448776469999999998622899999988862786755899977997166455779899999999821140
Q ss_pred --HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf --378012063235641445578988626889889989985303235778299996298100883331656423141000
Q gi|254780545|r 239 --NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316 (647)
Q Consensus 239 --~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~ 316 (647)
..--|++|+++|.+- ++.-|.||--+. +...+++.|-.|+.++.|=|-++- |++...
T Consensus 86 e~~g~KV~II~~Ae~Mt--------------~~AANALLKtLE--EPp~nt~fIL~t~~~~~LLPTIrS-----RC~~~~ 144 (262)
T PRK05818 86 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS-----RCVQYV 144 (262)
T ss_pred CCCCCEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCCHHHH-----HCCCCC
T ss_conf 02884899987778749--------------999999998612--898783899973881437308887-----701446
Q ss_pred HHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 1347889999999854887----773211024544120379899999999987645532024210456899
Q gi|254780545|r 317 NPDIVGREHILMVHSRNVP----LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 317 ~P~~~~r~~i~~~~~~~~~----~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
+ -..+.+..++++.+... .-.+..++.++.....-|=.|+-++...+. -++...++..+...
T Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i----~~~n~~~~~~~~~~ 210 (262)
T PRK05818 145 V-LSKEKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLI----NKKNKLIQIHKAWI 210 (262)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCCCEEHHHHHH
T ss_conf 6-643466788887408889876410110799998861676888999999998----75688433999999
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.12 Score=30.85 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=56.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-----CEE--------------------------CCCHHHHHHHHH
Q ss_conf 20123331--100378742588899997424699-----702--------------------------058578864442
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-----PFF--------------------------TISGSDFVELFV 222 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-----~f~--------------------------~~~~s~~~~~~~ 222 (647)
.-..+++| +-|.||.|+|||-|.|.++|-..- -+. ..+.-+.++.-.
T Consensus 19 vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSg 98 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCH
T ss_conf 08788799399998789979999999997685778788999999988684888657899956876671267789863398
Q ss_pred HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 223 GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 223 g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
-.+-|-.+..|-...|-|+++||-- .|-.. ..+ +.+-++|.++ .. +|.-||-+|...+.+.
T Consensus 99 ---G~kqrv~ia~al~~~p~lllLDEPt-----~gLD~----~~~-~~i~~~i~~l---~~-~g~tvi~~tH~l~~~~ 159 (173)
T cd03230 99 ---GMKQRLALAQALLHDPELLILDEPT-----SGLDP----ESR-REFWELLREL---KK-EGKTILLSSHILEEAE 159 (173)
T ss_pred ---HHHHHHHHHHHHHCCCCEEEECCCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEECCCHHHHH
T ss_conf ---9999999999996499999990886-----57999----999-9999999999---96-8999999928389999
No 384
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.43 E-value=0.057 Score=33.24 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=25.3
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6420123331--10037874258889999742469
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+-.++++| +-++||.|+|||-|++.++|...
T Consensus 54 k~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 16489984999999999999819999999957872
No 385
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.35 E-value=0.069 Score=32.66 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=26.1
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6420123331--10037874258889999742469
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+...+++| +-+.||.|+|||-|.++++|-..
T Consensus 16 ~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 04377886997999998999889999999957989
No 386
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.34 E-value=0.049 Score=33.72 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=13.8
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 0123331--100378742588899997424
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
-..+++| +-+.||.|+|||.|++.+.|-
T Consensus 34 s~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl 63 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 899829999999999998499999999645
No 387
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=95.32 E-value=0.042 Score=34.21 Aligned_cols=132 Identities=28% Similarity=0.485 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-----EECCCCCHHHH---H------------------
Q ss_conf 225698898528899999999987433567664201233311-----00378742588---8------------------
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGV-----LLVGPPGTGKT---L------------------ 196 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~-----ll~GppGtGKT---l------------------ 196 (647)
.+|+|==..+..++++=++|+-+-|++|+|- +|-|. ||+-||=--|- |
T Consensus 65 GGv~YiP~~~~~~~~~fv~~l~~~l~~s~Ri------~PGgflY~~Dll~~Psi~ski~~ila~~F~d~~ID~V~TV~TK 138 (269)
T TIGR01743 65 GGVKYIPEVSEKEAKEFVEELCEKLSESERI------LPGGFLYLTDLLFKPSILSKIGKILASVFIDKEIDAVMTVETK 138 (269)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCC------CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 9705845646045688999999862288840------3774755534541781577788887543268557878995218
Q ss_pred ---HHHHHHCCCCCCEECCC-------HHHHHH-HHHHCCH-HHHHHHHHHHHH---HCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf ---99997424699702058-------578864-4420332-459999999987---37801206323564144557898
Q gi|254780545|r 197 ---LARAVAGEANVPFFTIS-------GSDFVE-LFVGVGA-SRVRDMFEQAKN---NSPCIVFVDEIDAVGRHRGIGLG 261 (647)
Q Consensus 197 ---la~a~a~e~~~~f~~~~-------~s~~~~-~~~g~g~-~~vr~lf~~a~~---~~p~iifiDeida~~~~r~~~~~ 261 (647)
||-++|.-.+|||+-+. || +|+ -||--+. .||+.+| .||+ ..--++|||++= |+
T Consensus 139 GvPLA~~~A~~LnV~lvivRkD~kvTEGS-tVSiNYVSGssG~~I~~M~-LarrSLk~GS~vL~vDDFm-----ka---- 207 (269)
T TIGR01743 139 GVPLAYAVAKVLNVPLVIVRKDSKVTEGS-TVSINYVSGSSGDRIQKMS-LARRSLKKGSKVLIVDDFM-----KA---- 207 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCEECCC-EEEEEEEECCCCHHHHHHH-HHHHHHHHCCEEEEEECCC-----CC----
T ss_conf 82389899876496179998468121053-2899556768743678888-8888886089089995355-----54----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCC
Q ss_conf 86268898899899853032357-7829999629810
Q gi|254780545|r 262 GGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPD 297 (647)
Q Consensus 262 ~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~ 297 (647)
|| |+|-|...|+-|+.+ -||=|+.+|..++
T Consensus 208 GG------T~~Gm~~LL~EFda~l~GiGVli~~~~~~ 238 (269)
T TIGR01743 208 GG------TVKGMIELLKEFDAELAGIGVLIDNEESE 238 (269)
T ss_pred CC------CHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 87------02678888876271102322133235531
No 388
>PRK09401 reverse gyrase; Reviewed
Probab=95.30 E-value=0.26 Score=28.52 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=5.0
Q ss_pred CCCEEECCCC
Q ss_conf 6733404787
Q gi|254780545|r 509 LGKVSYEEGQ 518 (647)
Q Consensus 509 lG~i~~~~~~ 518 (647)
.|+++|-..+
T Consensus 916 ~GLITYmRTD 925 (1176)
T PRK09401 916 LGLITYHRTD 925 (1176)
T ss_pred CCEEECCCCC
T ss_conf 7803325889
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.27 E-value=0.01 Score=38.63 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHCCC
Q ss_conf 882799999997798
Q gi|254780545|r 67 LVGSKLLDKLQSKDI 81 (647)
Q Consensus 67 ~~~~~l~~~L~e~~V 81 (647)
.....|++.|...+.
T Consensus 68 ~w~~~~~~aL~~~d~ 82 (604)
T COG4178 68 DWNGPFYNALARRDL 82 (604)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 434378999998558
No 390
>KOG3928 consensus
Probab=95.27 E-value=0.016 Score=37.31 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=26.8
Q ss_pred CCCCCCEEECCCCCHHHHH-HHHHHHCCCCCCEECCC
Q ss_conf 1233311003787425888-99997424699702058
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTL-LARAVAGEANVPFFTIS 213 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTl-la~a~a~e~~~~f~~~~ 213 (647)
..|-+-.+|+|+||||||+ ||.|++--+.-.|+-+-
T Consensus 176 ~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~~wlIlh 212 (461)
T KOG3928 176 MHPVKRFVLDGEPGTGKSIALAQAVHYAADQKWLILH 212 (461)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6763589985799876205999999987317859997
No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.24 E-value=0.036 Score=34.66 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=65.3
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCC-----CC---------CCEECC----CHHHH----HHHHHHCCHHHHHHHHHHHH
Q ss_conf 3331100378742588899997424-----69---------970205----85788----64442033245999999998
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGE-----AN---------VPFFTI----SGSDF----VELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e-----~~---------~~f~~~----~~s~~----~~~~~g~g~~~vr~lf~~a~ 237 (647)
.++.+++.||=..|||.+-|+++-- +| .||+.+ ..+|= .+.|. .-..+++.+++.++
T Consensus 24 ~~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~~vpa~~~~~~~~~i~t~i~~~d~~~~~~S~F~-~E~~~~~~il~~~~ 102 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAK 102 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEHHHEEECCCEEEEEEECCCHHHCCCCHHH-HHHHHHHHHHHHHC
T ss_conf 98589998999986599999999999999968938624478233089999834751224535799-99999999999724
Q ss_pred HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
++.+|.+.+||+= ||++ ..|.....-.+|..+. . .+..++.||...+..+
T Consensus 103 ~~~~sLvliDEl~-----~GT~----~~eg~a~a~a~le~l~---~-~~~~~iitTH~~~l~~ 152 (199)
T cd03283 103 KGEPVLFLLDEIF-----KGTN----SRERQAASAAVLKFLK---N-KNTIGIISTHDLELAD 152 (199)
T ss_pred CCCCEEEEECCCC-----CCCC----HHHHHHHHHHHHHHHH---H-CCCEEEEECCCHHHHH
T ss_conf 8985799614324-----7998----6789999999999998---6-7987999887289886
No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.23 E-value=0.03 Score=35.24 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=21.1
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 10037874258889999742469970
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPF 209 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f 209 (647)
+.|+||+|+|||-|++.+..+..-.|
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf 99999998899999999985198776
No 393
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.20 E-value=0.092 Score=31.73 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=25.1
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.+-..+++| +-|.||.|+|||.|.|+++|...
T Consensus 22 ~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3078987997999998999889999999966888
No 394
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.20 E-value=0.12 Score=30.92 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 33110037874258889999742469970
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVPF 209 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~f 209 (647)
+|=++|.||+|.||+-|.+.+...-.-.|
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 97799999999999999999986396450
No 395
>PTZ00035 Rad51; Provisional
Probab=95.17 E-value=0.052 Score=33.51 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=28.1
Q ss_pred HHCCCCCCEE--ECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 2012333110--037874258889999742469970
Q gi|254780545|r 176 LGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVPF 209 (647)
Q Consensus 176 ~g~~~p~g~l--l~GppGtGKTlla~a~a~e~~~~f 209 (647)
||+-++.|.+ ++|+||||||-|+.-+|-.|..|.
T Consensus 123 LGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~ 158 (350)
T PTZ00035 123 LKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPI 158 (350)
T ss_pred HCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCH
T ss_conf 278941385878972798978999999999904857
No 396
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.16 E-value=0.099 Score=31.50 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=66.1
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC--------------CCCCEE-----CCCHHHHHHHHHHCC-----HHHHHHH
Q ss_conf 0123331100378742588899997424--------------699702-----058578864442033-----2459999
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE--------------ANVPFF-----TISGSDFVELFVGVG-----ASRVRDM 232 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e--------------~~~~f~-----~~~~s~~~~~~~g~g-----~~~vr~l 232 (647)
+..-++.+++.||-.-|||.+-|+++-- +.+|++ .+..+|= ..-|.+ -.+++.+
T Consensus 25 ~~~~~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~~vpa~~~~~~~~~~i~~~i~~~d~--~~~~~StF~~E~~~~~~i 102 (213)
T cd03281 25 GGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRES--VSSGQSAFMIDLYQVSKA 102 (213)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCEEEEECCHHH--HHCCCCHHHHHHHHHHHH
T ss_conf 799825999989998765999999999999998588576740399721223767676434--441325899999999999
Q ss_pred HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCC
Q ss_conf 999987378012063235641445578988626889889989985303235778299996298100883331656
Q gi|254780545|r 233 FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPG 307 (647)
Q Consensus 233 f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rpg 307 (647)
.+.|.+ .+.++|||+= ||++. .|.....-.+|..+-. ..+....++.||...+..+...+++.
T Consensus 103 l~~~~~--~sLvliDEl~-----~GT~~----~eg~ala~a~le~l~~-~~~~~~~~~~tTH~~~L~~~~~~~~~ 165 (213)
T cd03281 103 LRLATR--RSLVLIDEFG-----KGTDT----EDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSLLPER 165 (213)
T ss_pred HHHCCC--CCEEEEEECC-----CCCCH----HHHHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHHHHHHCCCC
T ss_conf 985888--8658773134-----78883----5679999999999996-58876649998972787654401656
No 397
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.16 E-value=0.017 Score=36.97 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=50.1
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHH-----HCCHHHHHHHHHH
Q ss_conf 676642012333110037874258889999742469----------9702058578864442-----0332459999999
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFV-----GVGASRVRDMFEQ 235 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~-----g~g~~~vr~lf~~ 235 (647)
..|-+.-++--+.+|..|+.|+|||-|.+|+..+.. .+=+.+..+..+.++. |.|+--.++|.+.
T Consensus 152 ~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~ 231 (343)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA 231 (343)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999999769889998889861999999999628965527996115002589999689996589888583979999999
Q ss_pred HHHHCCHHEEHHHH
Q ss_conf 98737801206323
Q gi|254780545|r 236 AKNNSPCIVFVDEI 249 (647)
Q Consensus 236 a~~~~p~iifiDei 249 (647)
|-...|--||+-|+
T Consensus 232 aLRmrPDRIivGEv 245 (343)
T PRK13851 232 SLRMRPDRILLGEM 245 (343)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 86079982899852
No 398
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.13 E-value=0.051 Score=33.59 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=24.3
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 6420123331--1003787425888999974246
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
..+..++||| .-..||+|||||.|-|.+.|..
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 2731355078189998898868999999985657
No 399
>PRK06217 hypothetical protein; Validated
Probab=95.13 E-value=0.015 Score=37.49 Aligned_cols=96 Identities=25% Similarity=0.297 Sum_probs=57.0
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCC
Q ss_conf 31100378742588899997424699702058578864442033245999999998737801206323564144557898
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG 261 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~ 261 (647)
+-|+..|.+|+|||.||+++|...++|++.+.- .|..-| -|. ...+|.
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~-----~~W~p~--------------~~p---------f~~kR~---- 49 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD-----FFWLPT--------------DPP---------FTTKRE---- 49 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-----CEECCC--------------CCC---------CCCCCC----
T ss_conf 679997899887899999999975989686455-----535689--------------997---------564379----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHH
Q ss_conf 8626889889989985303235778299996298100883331656423141000134788
Q gi|254780545|r 262 GGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVG 322 (647)
Q Consensus 262 ~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~ 322 (647)
..||.+. ++..+ ...++.|+= -|...--|+-+- |||-.|++.+|..--
T Consensus 50 --~~eR~~l---l~~~~---~~~~~WV~s--Gs~~~wgd~l~p---~~DlvVfL~lP~~ir 97 (185)
T PRK06217 50 --PEERLRL---LLEDL---RDSEGWILS--GSLLGWGDPLEP---LFDLVVFLYIPPELR 97 (185)
T ss_pred --HHHHHHH---HHHHH---HCCCCEEEE--CCCCCCCCCCCC---CCCEEEEEECCHHHH
T ss_conf --9999999---99986---379998995--775232321134---356899982898999
No 400
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=95.11 E-value=0.026 Score=35.74 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHC-----CCCC---------CEE-----CCCHHHHH----HHHHHCCHHHHHHHHHH
Q ss_conf 2333110037874258889999742-----4699---------702-----05857886----44420332459999999
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAG-----EANV---------PFF-----TISGSDFV----ELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~-----e~~~---------~f~-----~~~~s~~~----~~~~g~g~~~vr~lf~~ 235 (647)
.-++.+++.||-..|||.+-|+++- .+|. |.| .+..+|=+ +-|.. --.+++.+++.
T Consensus 40 ~~~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G~~VPA~~a~~~~~d~I~~~i~~~dsl~~~~StF~~-e~~~~~~il~~ 118 (234)
T pfam00488 40 ERSRILLITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMV-EMLETANILHN 118 (234)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCEEEEEECCCCHHHCCCCHHHH-HHHHHHHHHHH
T ss_conf 96169999788777619999999999999983687422205996365599985675334466117999-99999999973
Q ss_pred HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf 98737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r 236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp 306 (647)
|. ..+.|+|||+= ||+. .+|+....-.+|..+ ....+..++.||...+..+-+-..|
T Consensus 119 ~~--~~sLvliDEl~-----~GT~----~~eg~al~~aile~L---~~~~~~~~i~tTH~~~L~~l~~~~~ 175 (234)
T pfam00488 119 AT--DKSLVILDELG-----RGTS----TYDGLAIAWAVAEHL---AEKIRARTLFATHYHELTKLAEKLP 175 (234)
T ss_pred CC--CCCEECCCCCC-----CCCC----HHHHHHHHHHHHHHH---HHHCCCEEEEEECHHHHHHHHHHCC
T ss_conf 88--77322014245-----8998----346799999999999---9735977999713577999987476
No 401
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.09 E-value=0.021 Score=36.36 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=36.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 3110037874258889999742469970205857886444
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
|=|+|.|++-.|||-||+|+-....-||+.++--+|++|.
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~ 42 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL 42 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf 4999868998988999999998476756884185898867
No 402
>KOG2228 consensus
Probab=95.08 E-value=0.01 Score=38.71 Aligned_cols=139 Identities=22% Similarity=0.365 Sum_probs=72.9
Q ss_pred CCCEEECCCCCHHHHHH-HHHHHC--CCCCCEECCCHHHHHH----------------H-----HHHCCHHHHHHHHHHH
Q ss_conf 33110037874258889-999742--4699702058578864----------------4-----4203324599999999
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLL-ARAVAG--EANVPFFTISGSDFVE----------------L-----FVGVGASRVRDMFEQA 236 (647)
Q Consensus 181 p~g~ll~GppGtGKTll-a~a~a~--e~~~~f~~~~~s~~~~----------------~-----~~g~g~~~vr~lf~~a 236 (647)
..-+++.||-|.|||+| +-+++- |-|-.|+.+----++. + -.|--+...-.|.+.-
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCCEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
T ss_conf 77269981477881674077876677517727999878500155899999999999997532124225334699999987
Q ss_pred ---HHHCCH-HEEH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC-CCCCC
Q ss_conf ---873780-1206-32356414455789886268898899899853032357782999962981008833316-56423
Q gi|254780545|r 237 ---KNNSPC-IVFV-DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR-PGRFD 310 (647)
Q Consensus 237 ---~~~~p~-iifi-Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R-pgRfd 310 (647)
.+...| |||| ||||-.+.. ..||+-.=|-.|-- +....|.+||-|-|.|.++--=.| ..||-
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h-----------~rQtllYnlfDisq-s~r~Piciig~Ttrld~lE~LEKRVKSRFs 196 (408)
T KOG2228 129 KKGDETTSGKVIFILDEFDLFAPH-----------SRQTLLYNLFDISQ-SARAPICIIGVTTRLDILELLEKRVKSRFS 196 (408)
T ss_pred HCCCCCCCCEEEEEEEHHHCCCCC-----------HHHHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 337877885199983100024640-----------35678999988876-247986999850323389999999874335
Q ss_pred CE-EEECHHH-HHHHHHHHHHHH
Q ss_conf 14-1000134-788999999985
Q gi|254780545|r 311 RQ-ITVPNPD-IVGREHILMVHS 331 (647)
Q Consensus 311 ~~-i~~~~P~-~~~r~~i~~~~~ 331 (647)
.+ |++..|- ..+-..|++-.+
T Consensus 197 hr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228 197 HRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 52462269888588999999973
No 403
>KOG0057 consensus
Probab=95.07 E-value=0.13 Score=30.56 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 268999999999998789888
Q gi|254780545|r 452 STTYVWMTSRLTILMGGRVAE 472 (647)
Q Consensus 452 ~~tk~~l~~~i~v~LgGRaAE 472 (647)
..|..++++.|.-.++||..=
T Consensus 520 ~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057 520 SETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHHHHHHHHHHHHCCCCEEE
T ss_conf 566999999998751797699
No 404
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=95.07 E-value=0.009 Score=39.07 Aligned_cols=28 Identities=43% Similarity=0.754 Sum_probs=20.7
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHC
Q ss_conf 20123331--10037874258889999742
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~ 203 (647)
....+-.| |+|.||+|||||-|=-=|.+
T Consensus 24 i~L~i~~GEiViltGPSGSGKTTLLtLiG~ 53 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred CCEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 631771764798437889846889998876
No 405
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.05 E-value=0.015 Score=37.50 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=25.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10037874258889999742469970205
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
|-.-||||+|||-+||.+|...|++|++.
T Consensus 2 IaIdGpagsGKsT~ak~lA~~l~~~~ldt 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf 88868997898999999999909907766
No 406
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.19 Score=29.54 Aligned_cols=115 Identities=22% Similarity=0.414 Sum_probs=66.7
Q ss_pred HHHHHHCCCCCC--EEECCCCCHHHHH-HHHHHHCCC-CCCEECCCHHHHHHHH------HH--------CCHHHHHHHH
Q ss_conf 766420123331--1003787425888-999974246-9970205857886444------20--------3324599999
Q gi|254780545|r 172 KFKRLGGRIPHG--VLLVGPPGTGKTL-LARAVAGEA-NVPFFTISGSDFVELF------VG--------VGASRVRDMF 233 (647)
Q Consensus 172 ~~~~~g~~~p~g--~ll~GppGtGKTl-la~a~a~e~-~~~f~~~~~s~~~~~~------~g--------~g~~~vr~lf 233 (647)
...-+|.-+-+| +|+-|-||-||+. |-+..|.=+ .-+.+++||-+=...+ .| ..+.++.++.
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~ 161 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDII 161 (456)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHH
T ss_conf 87653677236617997368987798999999999870595799967767899999999828996455774112899999
Q ss_pred HHHHHHCCHHEEHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCC--EEEEE
Q ss_conf 99987378012063235641445578-988626889889989985303235778--29999
Q gi|254780545|r 234 EQAKNNSPCIVFVDEIDAVGRHRGIG-LGGGNDEREQTLNQLLVEMDGFESSEG--VILIA 291 (647)
Q Consensus 234 ~~a~~~~p~iifiDeida~~~~r~~~-~~~~~~e~~~~ln~ll~~mdg~~~~~~--v~vi~ 291 (647)
+...+..|.++.||-|..+-...-++ .|+-..-|+-| +-|+.+ .+..+ ++++|
T Consensus 162 ~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t--~~L~~~---AK~~~i~~fiVG 217 (456)
T COG1066 162 AELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVA--AELMRL---AKTKNIAIFIVG 217 (456)
T ss_pred HHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHH--HHHHHH---HHHCCCEEEEEE
T ss_conf 99985499789996541230263357998589999999--999999---987597399998
No 407
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.03 E-value=0.11 Score=31.09 Aligned_cols=38 Identities=42% Similarity=0.629 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 43356766420123331--100378742588899997424
Q gi|254780545|r 167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
..|-|.=.++|+-+|-| +|..|+-|||||.|.+-++--
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred CCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7847778651699746769999888985488999999998
No 408
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.00 E-value=0.014 Score=37.69 Aligned_cols=30 Identities=43% Similarity=0.731 Sum_probs=24.9
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+...+..| +-|.||+|||||.|-|.|||=-
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 26897479799998999888899999996887
No 409
>KOG3595 consensus
Probab=94.97 E-value=0.024 Score=35.97 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=22.6
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3331100378742588899997424699702058
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS 213 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~ 213 (647)
++.-.||.|-.|+||+-+.+=++.=++..+|.+.
T Consensus 464 ~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~ 497 (1395)
T KOG3595 464 PRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIE 497 (1395)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 9885688740676753299998611576605742
No 410
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.93 E-value=0.11 Score=31.31 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 66420123331--10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+..+-..+++| +-+.||.|+|||-|++.++|-..
T Consensus 20 L~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 754489986998999999999989999999967971
No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.88 E-value=0.026 Score=35.66 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=27.4
Q ss_pred EEECCCCCHHHHHHHHHHHC----CCCCCEECCCHHHHH
Q ss_conf 10037874258889999742----469970205857886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG----EANVPFFTISGSDFV 218 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~----e~~~~f~~~~~s~~~ 218 (647)
-+|+|.||.|||-||+++.. +.|+.+..+..-+++
T Consensus 2 CVLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlI 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC
T ss_conf 043269878736899999999864447605898621214
No 412
>KOG0481 consensus
Probab=94.87 E-value=0.087 Score=31.92 Aligned_cols=168 Identities=27% Similarity=0.358 Sum_probs=84.2
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHCCHHHHHHHH-----HH--HHH-HCCHHEEHHHHHHH
Q ss_conf 1100378742588899997424699702058--57886444203324599999-----99--987-37801206323564
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTIS--GSDFVELFVGVGASRVRDMF-----EQ--AKN-NSPCIVFVDEIDAV 252 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~--~s~~~~~~~g~g~~~vr~lf-----~~--a~~-~~p~iifiDeida~ 252 (647)
.|||.|-|||.|+-|-|-+-.-+-+.. ++| ||+ -.|.+|+-+||-- -+ |-- .-.-|+-|||+|-
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaV-YTSGKGSS----AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDK- 439 (729)
T KOG0481 366 NVLLLGDPGTAKSQLLKFVEKVSPIAV-YTSGKGSS----AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDK- 439 (729)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEE-EECCCCCC----CCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEHHHC-
T ss_conf 289836985268999999986086379-94688764----334624678668763389826659981697898300002-
Q ss_pred HCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCC--CCCEEEEEECCCC-----------CCCC--HHHCCCCCCCCEEEEC
Q ss_conf 144557898862688-9889989985303235--7782999962981-----------0088--3331656423141000
Q gi|254780545|r 253 GRHRGIGLGGGNDER-EQTLNQLLVEMDGFES--SEGVILIAATNRP-----------DVLD--AALLRPGRFDRQITVP 316 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~-~~~ln~ll~~mdg~~~--~~~v~vi~aTn~~-----------~~lD--~al~RpgRfd~~i~~~ 316 (647)
-|......-|..- .||+.- ---|..+ |..--|+||.|-+ |.+| |-+|- |||-.+-|-
T Consensus 440 --Mre~DRVAIHEAMEQQTISI---AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK 512 (729)
T KOG0481 440 --MREDDRVAIHEAMEQQTISI---AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK 512 (729)
T ss_pred --CCCHHHHHHHHHHHHHHHHH---HHHCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH--HCCEEEEEE
T ss_conf --58201568989987655777---55052256424033445337866554346785556322346764--513799983
Q ss_pred HHHHHHH-----HHHHHHHHCC--CCCCC------CCCHHHHHHH--------HHCCCHHHHHHHHHH
Q ss_conf 1347889-----9999998548--87773------2110245441--------203798999999999
Q gi|254780545|r 317 NPDIVGR-----EHILMVHSRN--VPLAP------NVILKTIARG--------TPGFSGADLRNLVNE 363 (647)
Q Consensus 317 ~P~~~~r-----~~i~~~~~~~--~~~~~------~~d~~~la~~--------t~g~sgAdi~~~~~e 363 (647)
---...| +.++.+|..+ ...++ .+.++.+-+. .|-+|.+--++|.+.
T Consensus 513 D~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~ 580 (729)
T KOG0481 513 DEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSR 580 (729)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 36760353689877531000444455674334788223899999999998603888899999999877
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.046 Score=33.92 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred EEECCCCCHHHHHHHHHHHCC-------CCCCEECCCH-----HHHHH---HHHHCC------HHHHHHHHHHHHHHCCH
Q ss_conf 100378742588899997424-------6997020585-----78864---442033------24599999999873780
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE-------ANVPFFTISG-----SDFVE---LFVGVG------ASRVRDMFEQAKNNSPC 242 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e-------~~~~f~~~~~-----s~~~~---~~~g~g------~~~vr~lf~~a~~~~p~ 242 (647)
+-|+||.|.|||...--+|.. -.|.++.+.. -+=.. ...|+- ..-++++...-+ .--
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~--~~~ 428 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYK 428 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC--CCC
T ss_conf 787437776731179999999999739981899972664087999999999983975798289999999999836--999
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHHH
Q ss_conf 1206323564144557898862688988998998530323577829999629810088333165642--31410001347
Q gi|254780545|r 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPDI 320 (647)
Q Consensus 243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~~ 320 (647)
+|+||- .|. +..|. -+...|..+++...-...+|+.||...+.|+..+-+-+++ +.+|.--+=..
T Consensus 429 lvliDT---aG~-------~~rd~---~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~ 495 (557)
T PRK12727 429 LVLIDT---AGM-------GQRDR---ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDET 495 (557)
T ss_pred EEEEEC---CCC-------CCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 899949---998-------84699---99999998751477635999968899899999999853799874899614367
Q ss_pred HHHHHHHHHHHC
Q ss_conf 889999999854
Q gi|254780545|r 321 VGREHILMVHSR 332 (647)
Q Consensus 321 ~~r~~i~~~~~~ 332 (647)
..--.+|.+.++
T Consensus 496 ~~~G~~l~~~~~ 507 (557)
T PRK12727 496 GRFGSALSVVVD 507 (557)
T ss_pred CCCCHHHHHHHH
T ss_conf 870399999999
No 414
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.82 E-value=0.018 Score=36.87 Aligned_cols=31 Identities=48% Similarity=0.697 Sum_probs=25.0
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...+++| +-|.||+|||||.|.|++||=..
T Consensus 25 vsl~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~ 57 (351)
T PRK11432 25 LDLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 574988998999999996499999999976999
No 415
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.81 E-value=0.088 Score=31.89 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+..+-..+++| +-+.||.|+|||.|.+++.+-.
T Consensus 20 L~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~ 54 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 42507998799999999999997999999996035
No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.78 E-value=0.061 Score=33.04 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.4
Q ss_pred CCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 31100378742588899997424
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e 204 (647)
.=+.|.|.||+|||.+|+++...
T Consensus 8 ~viW~TGLsGSGKTTiA~~l~~~ 30 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79997899999899999999999
No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.75 E-value=0.13 Score=30.57 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHHH-----CCHHHHHHHHHHHHHH
Q ss_conf 0123331--10037874258889999742469----------97020585788644420-----3324599999999873
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFVG-----VGASRVRDMFEQAKNN 239 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~g-----~g~~~vr~lf~~a~~~ 239 (647)
...+++| +-|.||.|+|||-|.|.++|-.. -+.-..+..+....-++ -|-.+=|-.+..|-..
T Consensus 20 sl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qLSgG~~Qrv~iaral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 88987998999998899899999999957768985789999999999999999987994894699899999999999972
Q ss_pred CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 78012063235641445578988626889889989985303235778299996298100
Q gi|254780545|r 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 240 ~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.|-|+++||-- .+-.. ..+ +.+-++|.++ .. +|.-|+-.|...+.
T Consensus 100 ~p~llilDEPt-----~gLD~----~~~-~~i~~~l~~l---~~-~G~til~vtH~l~~ 144 (163)
T cd03216 100 NARLLILDEPT-----AALTP----AEV-ERLFKVIRRL---RA-QGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEEECCHHH
T ss_conf 99999990975-----57999----999-9999999999---87-89899999384999
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.70 E-value=0.3 Score=27.99 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=21.4
Q ss_pred CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 123331--100378742588899997424
Q gi|254780545|r 178 GRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 178 ~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
..+++| +-+.||.|+|||.|.++++|-
T Consensus 21 l~v~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 68879989999968999999999997077
No 419
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=94.70 E-value=0.11 Score=31.22 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=48.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf 10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~ 263 (647)
|+|+|.|++|||..|+.++... +. +.. .++.|+| |+++..|.. ....
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l----------------------------~~--~~~-~v~vi~d-~~~~~~~~~-y~~s 48 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYL----------------------------EE--KGY-DVIVISD-ESLGIESDD-YKDS 48 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------------------------HH--CCC-EEEEECC-CCCCCCCCC-CCCC
T ss_conf 7985799996889999999999----------------------------97--599-3899780-012675310-0010
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 26889889989985303235778299996298100
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
+.|. .+=..|..+.+..-+.+.+|++-.+|....
T Consensus 49 ~~Ek-~~R~~l~s~v~r~Ls~~~iVIlD~~NYiKG 82 (266)
T pfam08433 49 KKEK-FLRGSLRSAVKRDLSKNTIVIVDSLNYIKG 82 (266)
T ss_pred HHHH-HHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 4789-999999999987516688899548740456
No 420
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.69 E-value=0.018 Score=36.92 Aligned_cols=31 Identities=42% Similarity=0.688 Sum_probs=24.4
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...+++| +-|.||+|||||.|-|+|||=-.
T Consensus 23 v~l~v~~Ge~~~llGpSG~GKtTlLr~iaGl~~ 55 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 486998999999999995359999999976999
No 421
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.68 E-value=0.2 Score=29.37 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=27.2
Q ss_pred EECHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCHHHHHHH----HHCCCEEEEEECC
Q ss_conf 2158999999970991599998897999995798069998268827999999----9779828998568
Q gi|254780545|r 25 DISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGSKLLDKL----QSKDIEISSRPVN 89 (647)
Q Consensus 25 eIsYSeFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~~l~~~L----~e~~V~v~~~~~~ 89 (647)
++.|+-+++.++..+=+.|+|+=-+. ++...+.+|....-+.-.++...+ ..+++-+-..+..
T Consensus 55 ~~~~a~l~D~l~~EreqGiTIDva~~--~F~t~~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~ 121 (613)
T PRK05506 55 EIDLALLVDGLAAEREQGITIDVAYR--YFSTPKRKFIVADTPGHEQYTRNMATGASTADLAIILVDAR 121 (613)
T ss_pred CEEEEEECCCCHHHHHCCCEEEEEEE--EEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 60354421488889855971685677--88438705999428967989989998786538799999888
No 422
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=94.67 E-value=0.031 Score=35.15 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=35.7
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 110037874258889999742469970205857886444
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
=|+|.|+|-.|||-||||+-....-||+.++--.|+++.
T Consensus 3 II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~ 41 (174)
T pfam07931 3 IILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAM 41 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf 999748998887999999998474746764285888767
No 423
>pfam01202 SKI Shikimate kinase.
Probab=94.66 E-value=0.04 Score=34.34 Aligned_cols=42 Identities=29% Similarity=0.530 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 74258889999742469970205857886444203324599999999
Q gi|254780545|r 190 PGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA 236 (647)
Q Consensus 190 pGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a 236 (647)
+|+|||.++|.+|...++||+.+.- +++...|. .++++|++-
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~--~ie~~~g~---si~eif~~~ 42 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQ--EIEKRTGM---SIAEIFEEE 42 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHH--HHHHHHCC---CHHHHHHHH
T ss_conf 9897799999999996999788729--99988788---999999981
No 424
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.66 E-value=0.039 Score=34.42 Aligned_cols=105 Identities=26% Similarity=0.353 Sum_probs=54.0
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCC-CCEE-CCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHH
Q ss_conf 110037874258889999742469-9702-05857886---------4442033245999999998737801206-3235
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEAN-VPFF-TISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV-DEID 250 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~-~~f~-~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi-Deid 250 (647)
.||+.|++|+|||.|.+.+-..-. ...+ .+.|.... ..|---|..+.|.++..--..+-+|||+ |=-|
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~~~~~iI~VvDssd 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCC
T ss_conf 99999999998899999997289875641685075789998399889999858874420558987056744899970763
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCCCC
Q ss_conf 6414455789886268898899899853032357-7829999629810088
Q gi|254780545|r 251 AVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATNRPDVLD 300 (647)
Q Consensus 251 a~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn~~~~lD 300 (647)
. .| -.+....+..+|..-+ +... -.++++| |..|.-|
T Consensus 81 ~---~~-------~~~~~~~l~~ll~~~~-~~~~~~PiLI~~--NK~D~~~ 118 (162)
T cd04157 81 R---LR-------LVVVKDELELLLNHPD-IKHRRVPILFFA--NKMDLPD 118 (162)
T ss_pred H---HH-------HHHHHHHHHHHHHCHH-HCCCCCEEEEEE--ECCCCCC
T ss_conf 8---88-------9999999999971765-517984599998--1477889
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.65 E-value=0.13 Score=30.61 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=55.2
Q ss_pred EEECCCCCHHHHHHHHHHHC--------------CCCCCEEC-----CCHHHHH----HHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 10037874258889999742--------------46997020-----5857886----4442033245999999998737
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG--------------EANVPFFT-----ISGSDFV----ELFVGVGASRVRDMFEQAKNNS 240 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~--------------e~~~~f~~-----~~~s~~~----~~~~g~g~~~vr~lf~~a~~~~ 240 (647)
+++.||-..|||.+-|+++- ++.+|.|. +..+|=+ +-|.. --.+++.+++.| ..
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~~d~i~~~i~~~d~~~~~~S~F~~-e~~~~~~il~~~--~~ 78 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMV-EMKETANILKNA--TE 78 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHC--CC
T ss_conf 899799988489999999999999997888615771995031002335641002156418999-999999999838--98
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 80120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
.+.+.+||+= ||++ ..|+....-.+|..+ ....+..++.||...+..
T Consensus 79 ~sLvliDEl~-----~GT~----~~eg~ala~aile~l---~~~~~~~~iitTH~~eL~ 125 (185)
T smart00534 79 NSLVLLDELG-----RGTS----TYDGVAIAAAVLEYL---LEKIGALTLFATHYHELT 125 (185)
T ss_pred CEEEEECCCC-----CCCC----HHHHHHHHHHHHHHH---HHCCCCEEEEEECHHHHH
T ss_conf 7376304113-----6888----147899999999999---963697599860437899
No 426
>PRK06696 uridine kinase; Validated
Probab=94.63 E-value=0.041 Score=34.30 Aligned_cols=54 Identities=30% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 99999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 159 DLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 159 ~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
.+.++++-+ .++.-.-|-=|-.-||||+|||.||++++... |.|++.++.-+|.
T Consensus 10 ~~~~~~~~i------~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~ 66 (227)
T PRK06696 10 VVKEIANHI------LTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFH 66 (227)
T ss_pred HHHHHHHHH------HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999999999------835999868999778998787999999999997469948997154434
No 427
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.61 E-value=0.047 Score=33.84 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=65.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC-----CCCC---------EE-----CCCHHHHHHHHHHCC-----HHHHHHH
Q ss_conf 0123331100378742588899997424-----6997---------02-----058578864442033-----2459999
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE-----ANVP---------FF-----TISGSDFVELFVGVG-----ASRVRDM 232 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e-----~~~~---------f~-----~~~~s~~~~~~~g~g-----~~~vr~l 232 (647)
+..-++.+++.||-..|||.+-|++|-- +|.+ .+ .+...| ++.-|.+ -.+++.+
T Consensus 26 ~~~~~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~~vpA~~~~~~~~d~i~~~i~~~d--~~~~~~StF~~e~~~~~~i 103 (218)
T cd03286 26 GATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARD--DIMKGESTFMVELSETANI 103 (218)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCEEECCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf 79974089998999887389999999999999828843014647734664899745866--1431150699999999999
Q ss_pred HHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf 99998737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r 233 FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP 306 (647)
Q Consensus 233 f~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp 306 (647)
++.+.+ .+.+++||+= ||++ ..|+....-.+|..+ ..+.+..++.+|...+..+....+|
T Consensus 104 l~~~~~--~sLvllDE~~-----~GT~----~~eg~ala~aile~L---~~~~~~~~i~tTH~~el~~~~~~~~ 163 (218)
T cd03286 104 LRHATP--DSLVILDELG-----RGTS----THDGYAIAHAVLEYL---VKKVKCLTLFSTHYHSLCDEFHEHG 163 (218)
T ss_pred HHHCCC--CCCEECCCCC-----CCCC----CHHHHHHHHHHHHHH---HHCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 986799--8501025546-----8998----116799999999999---8637976999767289999886488
No 428
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.58 E-value=0.047 Score=33.89 Aligned_cols=101 Identities=28% Similarity=0.369 Sum_probs=62.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH-HHHHHHH
Q ss_conf 100378742588899997424699702058578864---------442033245999999998737801206-3235641
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV-DEIDAVG 253 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi-Deida~~ 253 (647)
||+.|-+|.|||.+-..+.++--.....+.|..... .|---|..+.|.++..--+.+-+|||+ |=-|
T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDssD--- 78 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD--- 78 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCC---
T ss_conf 89990089988999999828998765087773179999899999999899877888999987347765799985575---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 445578988626889889989985303235778299996298100
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
+.| =.|....|..+|.+=+ -.+..|+|+| |.-|.
T Consensus 79 ~~r-------l~eak~~L~~lL~~~~--l~~~PiLIla--NKqDl 112 (167)
T cd04161 79 DDR-------VQEVKEILRELLQHPR--VSGKPILVLA--NKQDK 112 (167)
T ss_pred HHH-------HHHHHHHHHHHHCCHH--HCCCEEEEEE--ECCCC
T ss_conf 889-------9999999999965887--7899599998--86576
No 429
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.57 E-value=0.043 Score=34.15 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=59.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf 10037874258889999742469970205857886---------444203324599999999873780120632356414
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~ 254 (647)
||+.|.+|+|||.+.+.+.+..-.+-..+-|-... ..|---|..+.|.+...--+++-+|||. +|+--+
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfV--vDssd~ 79 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV--VDSSHR 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEE--EECCHH
T ss_conf 999998999889999999579968977868816699998988999998999724463678755576279999--986306
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 45578988626889889989985303235778299996298100
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
.| =+|-...|+.+|.+-+- .+..++++| |..|.
T Consensus 80 ~~-------~~ea~~~l~~ll~~~~~--~~~piLIla--NK~Dl 112 (169)
T cd04158 80 DR-------VSEAHSELAKLLTEKEL--RDALLLIFA--NKQDV 112 (169)
T ss_pred HH-------HHHHHHHHHHHHHHHHH--CCCEEEEEE--ECCCC
T ss_conf 77-------99999999999712753--798499997--35567
No 430
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54 E-value=0.029 Score=35.34 Aligned_cols=199 Identities=18% Similarity=0.276 Sum_probs=98.1
Q ss_pred ECHHHHHHHHHHCCEEEEEEECCE-EEEEEECCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 158999999970991599998897-9999957980699982688279999999779828998568652189999999999
Q gi|254780545|r 26 ISYSQFIKDVDAGRVRKISVIGTH-ITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFP 104 (647)
Q Consensus 26 IsYSeFlk~Le~g~V~sV~I~~~~-i~~~~~~g~~~~~t~~p~~~~~l~~~L~e~~V~v~~~~~~~~s~~~~~iL~~~LP 104 (647)
+.|..+.-.+.+.+|+.|.+++.. +..+.+... .+.+..+..+......+...-.....++.....+ ++..-+|
T Consensus 13 ~g~g~l~p~l~D~~iedI~~n~~~~v~v~~~~~~-~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~P----i~~~~lp 87 (312)
T COG0630 13 IGLGKLEPLLRDPRIEDIVVNGPGPVYVEHKGGG-SYVTNIPFLTEEELDSLAIRLAQRSGKPISEANP----ILDATLP 87 (312)
T ss_pred CCCCCCCHHHCCCCCEEEEECCCCCEEEEEECCC-EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC----CEEEECC
T ss_conf 2652353001389840699728962899970675-0342554567889999999999862996678887----1687748
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99999999999985167788777676632100001124225698898528899999999987433567664201233311
Q gi|254780545|r 105 LVLVVLVWMFLMRQIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGV 184 (647)
Q Consensus 105 liLli~i~~fl~rr~~gGg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ 184 (647)
-..-+.+ -+-.....+ +..+.+-|.+.+ -.+-.|+........+.. .|..+-..-.+-+
T Consensus 88 ~g~Ri~i--~~~~~v~~~--~~s~~IRk~~~~-------~~t~~~l~~~gt~~~~~~----------ayL~~~ie~~~si 146 (312)
T COG0630 88 DGSRIQI--VLGPEVSPN--GSSFTIRKFSDE-------PITPEDLIEYGTISPEQA----------AYLWLAIEARKSI 146 (312)
T ss_pred CCEEEEE--ECCCCCCCC--CCCEEEECCCCC-------CCCHHHHHHCCCCCHHHH----------HHHHHHHHCCCCE
T ss_conf 8648988--407865689--886688626688-------899899854378888899----------9999999769949
Q ss_pred EECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHHHC-----CHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf 0037874258889999742469----------970205857886444203-----3245999999998737801206323
Q gi|254780545|r 185 LLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFVGV-----GASRVRDMFEQAKNNSPCIVFVDEI 249 (647)
Q Consensus 185 ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~g~-----g~~~vr~lf~~a~~~~p~iifiDei 249 (647)
+.+||+|+|||-+-.|+...-. .|=+.+.+...+.++... +.-...++++.|-...|-.|.++|+
T Consensus 147 ii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~~~~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEv 226 (312)
T COG0630 147 IICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGEL 226 (312)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99888888649599999863785221899525554147887658998325777656666999999986239986999633
Q ss_pred H
Q ss_conf 5
Q gi|254780545|r 250 D 250 (647)
Q Consensus 250 d 250 (647)
.
T Consensus 227 r 227 (312)
T COG0630 227 R 227 (312)
T ss_pred E
T ss_conf 3
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.53 E-value=0.056 Score=33.29 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCCC---CCEECC
Q ss_conf 00112422569889852889999999998743356766420123331-10037874258889999742469---970205
Q gi|254780545|r 137 LLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEAN---VPFFTI 212 (647)
Q Consensus 137 ~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~~---~~f~~~ 212 (647)
+..+.....+++|.+=.++..+.++++. .-|.| +|+.||+|.|||-+..|+-.+.. ..++.+
T Consensus 49 ll~~~~~~~~L~~LG~~~~~~~~l~~~~--------------~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~ti 114 (264)
T cd01129 49 ILDKKNQILDLEKLGLKPENLEIFRKLL--------------EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred EECCCCCCCCHHHHCCCHHHHHHHHHHH--------------HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7577666579879579999999999997--------------08998899978999977999999998643688508998
Q ss_pred CHH-HHH-----HHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 857-886-----44420332-459999999987378012063235
Q gi|254780545|r 213 SGS-DFV-----ELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 213 ~~s-~~~-----~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeid 250 (647)
--+ ++. ..-+.... ..-.+.-..+-...|-||+|+||.
T Consensus 115 EdPvE~~~~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~igEiR 159 (264)
T cd01129 115 EDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 676314568873576166668789999999855699988746889
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.49 E-value=0.056 Score=33.28 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=64.0
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCC-----CCC---------CEE-----CCCHHHHH----HHHHHCCHHHHHHHHHHHH
Q ss_conf 331100378742588899997424-----699---------702-----05857886----4442033245999999998
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGE-----ANV---------PFF-----TISGSDFV----ELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e-----~~~---------~f~-----~~~~s~~~----~~~~g~g~~~vr~lf~~a~ 237 (647)
.+..++.||-..|||.+-|+++-- +|. |.+ .+...|=+ +-|.. --.+++.+++.+.
T Consensus 31 ~~~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~~vpa~~~~~~~~d~i~~~i~~~d~~~~~~StF~~-e~~~~~~il~~~~ 109 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV-ELSETSHILSNCT 109 (222)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCEEECCCEEEEECCCCCHHHCCCCHHHH-HHHHHHHHHHHCC
T ss_conf 448999789988728999999999999972677214563996357599950678623445227999-9999999998678
Q ss_pred HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
Q ss_conf 7378012063235641445578988626889889989985303235778299996298100883331656423
Q gi|254780545|r 238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFD 310 (647)
Q Consensus 238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd 310 (647)
. .+.++|||+= ||+. ..|+....-.+|..+ ....+..++.||...+..+-.-..|+++.
T Consensus 110 ~--~sLvliDEl~-----~GT~----~~eg~ala~aile~l---~~~~~~~~i~tTH~~~L~~l~~~~~~~v~ 168 (222)
T cd03287 110 S--RSLVILDELG-----RGTS----THDGIAIAYATLHYL---LEEKKCLVLFVTHYPSLGEILRRFEGSIR 168 (222)
T ss_pred C--CCEEEECCCC-----CCCC----HHHHHHHHHHHHHHH---HHCCCCEEEEECCCHHHHHHHHHCCCCEE
T ss_conf 8--7544232246-----8998----357799999999999---86058899994762789999875878457
No 433
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.49 E-value=0.1 Score=31.46 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCEEECCCCCHHHHHHHHHHHC-----CCC---------CCEE-----CCCHHHHHHHHHHCC-----HHHHHHHHHHHH
Q ss_conf 3110037874258889999742-----469---------9702-----058578864442033-----245999999998
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAG-----EAN---------VPFF-----TISGSDFVELFVGVG-----ASRVRDMFEQAK 237 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~-----e~~---------~~f~-----~~~~s~~~~~~~g~g-----~~~vr~lf~~a~ 237 (647)
+.+++.||-..|||.+-|+++- .+| +|.| .+..+|= ..-|.+ -.+++.+++.|
T Consensus 31 ~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~~vpA~~a~i~~~d~I~t~i~~~d~--i~~~~StF~~e~~~~~~il~~a- 107 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDD--LAGGRSTFMVEMVETANILNNA- 107 (216)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCEEEEEECCCCH--HHCCCCHHHHHHHHHHHHHHHC-
T ss_conf 5999989987745999999999999998687587661599704469995068621--3337265899999999999848-
Q ss_pred HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCC
Q ss_conf 7378012063235641445578988626889889989985303235778299996298100883331656
Q gi|254780545|r 238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPG 307 (647)
Q Consensus 238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rpg 307 (647)
...+.|.|||+= ||++. .|.......+|..+ ..+.+..++.||...+.-+-+...|+
T Consensus 108 -~~~sLvliDEl~-----~gT~~----~eg~ala~aile~L---~~~~~~~~i~tTH~~~L~~l~~~~~~ 164 (216)
T cd03284 108 -TERSLVLLDEIG-----RGTST----YDGLSIAWAIVEYL---HEKIGAKTLFATHYHELTELEGKLPR 164 (216)
T ss_pred -CCCCEEEECCCC-----CCCCH----HHHHHHHHHHHHHH---HHCCCCEEEEEECHHHHHHHHHHCCC
T ss_conf -776156334456-----89985----78899999999999---97079728975050889998762866
No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.11 Score=31.29 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=23.6
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 110037874258889999742469970205857
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
=+.|+||+|+||+-+.|++-..-+ -.+|+|.+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~T 37 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDK-LRFSVSAT 37 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-EEEEEEEC
T ss_conf 999989988888999999986349-37999852
No 435
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=94.46 E-value=0.029 Score=35.43 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=27.6
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 420123331--1003787425888999974246997
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP 208 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~ 208 (647)
+++...+.| ++|.|+=|.|||.|+|+++...|+.
T Consensus 7 ~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 7 RLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999768999799998887788999999999985998
No 436
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.025 Score=35.86 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=23.9
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
....+++| +-+.||+|||||.|.|++||=.
T Consensus 43 vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 47588899999999899848999999997599
No 437
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.42 E-value=0.058 Score=33.22 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=49.0
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHCCCC------CC----------------------------------EECCCH-
Q ss_conf 2012333110037874258889999742469------97----------------------------------020585-
Q gi|254780545|r 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEAN------VP----------------------------------FFTISG- 214 (647)
Q Consensus 176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~~------~~----------------------------------f~~~~~- 214 (647)
+|..|-=|+ .|||-||||+-|-|.+-+--- .- ++..+|
T Consensus 83 y~~qP~I~v-VYGPTG~GKSQLlRNlis~~lI~P~PETVfFItPq~~mIpp~E~~aWe~Ql~EGNY~~~~dgti~P~t~t 161 (370)
T pfam02456 83 YGLQPVIGV-VYGPTGCGKSQLLRNLLSCQLIQPIPETVFFITPQKDMIPPQEQTAWELQLCEGNYSCGPDGTIAPQTGT 161 (370)
T ss_pred CCCCCEEEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf 678744999-9889987789999998734667799972899767778679899999999987357767999746356575
Q ss_pred --HHHHHHHHHCC-------HHHHHHHHHHHHHHCCHHEEHHHH-HHHHCCCCC
Q ss_conf --78864442033-------245999999998737801206323-564144557
Q gi|254780545|r 215 --SDFVELFVGVG-------ASRVRDMFEQAKNNSPCIVFVDEI-DAVGRHRGI 258 (647)
Q Consensus 215 --s~~~~~~~g~g-------~~~vr~lf~~a~~~~p~iifiDei-da~~~~r~~ 258 (647)
++|++|-.-+- -..=+.+|.+|-++.|--|.+||- +-+|..++-
T Consensus 162 ~~P~Fv~msy~d~t~~~Nldv~~p~NiF~~Aa~~GPIaIImDECMe~Lg~~~~I 215 (370)
T pfam02456 162 FRPRFVEMTYEDATSPENLDVNHPNNIFVQAAKNGPIAIIMDECMEKLGSHKSI 215 (370)
T ss_pred CCHHHEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHCCCCCH
T ss_conf 350030301777268335688980679999870598799879999986279865
No 438
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.018 Score=36.84 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.8
Q ss_pred EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 10037874258889999742469
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~ 206 (647)
++|.|+||.|||-+||-+|.+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99826999880178999999999
No 439
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.34 E-value=0.19 Score=29.49 Aligned_cols=41 Identities=41% Similarity=0.806 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHH
Q ss_conf 288999999999874335676642012-----3331100378742588899
Q gi|254780545|r 153 VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLA 198 (647)
Q Consensus 153 ~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla 198 (647)
++...+.+++.+..||... +|.+ .| =.|+.||||+|||-+-
T Consensus 83 ~~~l~~r~~~al~~Lk~~~----~~g~~~ly~LP-WYlviG~~gsGKTt~l 128 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSR----LGGRRYLYDLP-WYLVIGPPGSGKTTLL 128 (1169)
T ss_pred HHHHHHHHHHHHHHHHHCC----CCCCCHHHHCC-EEEEECCCCCCHHHHH
T ss_conf 9999999999999997552----68732264389-5899789998668999
No 440
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.33 E-value=0.023 Score=36.07 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=25.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10037874258889999742469970205
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI 212 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~ 212 (647)
|-.-||.|+||+-+||.+|.+.|.+|+..
T Consensus 7 IaIDGpagSGKST~ak~lA~~L~~~yldT 35 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 99658986787899999999939887641
No 441
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.30 E-value=0.028 Score=35.50 Aligned_cols=30 Identities=47% Similarity=0.657 Sum_probs=24.0
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+...+++| +-|.||+|||||.|-|++||=.
T Consensus 24 vsl~i~~GE~~~llGpSG~GKTTlLr~iaGL~ 55 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 67199999899999999745999999997776
No 442
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.23 E-value=0.23 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=20.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 0123331100378742588899997424
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
|.++-.=+++.|.||.|||.||--+|..
T Consensus 190 Gl~~g~LiIiaARPsmGKTafalnia~n 217 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 9998868999854678745999999999
No 443
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.18 E-value=0.027 Score=35.62 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=23.4
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 0123331--1003787425888999974246
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
...+|+| +-|.||+|||||.|.+++||-.
T Consensus 18 ~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl~ 48 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINLISGLT 48 (352)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9998899899999999962999999997689
No 444
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=94.14 E-value=0.22 Score=28.99 Aligned_cols=87 Identities=31% Similarity=0.381 Sum_probs=46.1
Q ss_pred HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC------------CCCCCHHHCCC
Q ss_conf 378012063235641445578988626889889989985303235778299996298------------10088333165
Q gi|254780545|r 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR------------PDVLDAALLRP 306 (647)
Q Consensus 239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~------------~~~lD~al~Rp 306 (647)
.-|-|+||||..-+- -|--.-||--| ++.-.-+||-|||| |.-+..-|
T Consensus 274 lvpGVLFIDEvHMLD-----------iEcFsfLnral------Es~laPivI~ATNRG~~~IRGTd~~sPHGiP~Dl--- 333 (395)
T pfam06068 274 IVPGVLFIDEVHMLD-----------IECFSFLNRAL------ESELAPIVILATNRGICTIRGTDIISPHGIPLDL--- 333 (395)
T ss_pred EECCCEEEECCHHCC-----------HHHHHHHHHHH------CCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHH---
T ss_conf 842746885000000-----------58998887765------0567876999844652035256775888998777---
Q ss_pred CCCCCE--EEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH
Q ss_conf 642314--10001347889999999854--8877732110245441
Q gi|254780545|r 307 GRFDRQ--ITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARG 348 (647)
Q Consensus 307 gRfd~~--i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~ 348 (647)
+||. |...+=+.++-++|+++.++ +..++++ -++.|++.
T Consensus 334 --LDRllII~T~py~~~ei~~Ii~iRa~~E~v~l~~~-al~~L~~i 376 (395)
T pfam06068 334 --LDRLLIITTEPYTREEIKQILEIRAQEEGVEISEE-ALDLLAKI 376 (395)
T ss_pred --HHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHH
T ss_conf --73025885688998999999998777607877989-99999986
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.028 Score=35.50 Aligned_cols=33 Identities=33% Similarity=0.639 Sum_probs=26.2
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6420123331--10037874258889999742469
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+...+++| +-+.||+|||||.|-+.+||=..
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 05035877997999989997889999999968787
No 446
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.10 E-value=0.087 Score=31.91 Aligned_cols=102 Identities=26% Similarity=0.419 Sum_probs=60.7
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf 1003787425888999974246997-0205857886---------44420332459999999987378012063235641
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVP-FFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
+|+.|..|.|||.+...+.++.... ...+-|..+. .+|---|..+.|.+...--..+-+|||+ +|+--
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~~~gIIfV--VDssD 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV--VDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE--EECCC
T ss_conf 9999679998999999981699876535632774699998999999985375288865699871177589999--95688
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 44557898862688988998998530323577829999629810088
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
+.| =+|....|..+|.+- .+-.++|+| |.-|.-+
T Consensus 80 ~~r-------l~eak~~L~~ll~~~----~~~PlLIla--NKqDl~~ 113 (164)
T cd04162 80 SER-------LPLARQELHQLLQHP----PDLPLVVLA--NKQDLPA 113 (164)
T ss_pred HHH-------HHHHHHHHHHHHHCC----CCCEEEEEE--ECCCCCC
T ss_conf 889-------999999999997087----998699998--6324336
No 447
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.09 E-value=0.49 Score=26.47 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=87.8
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHH--HHHCCHHEEHHHHHHHHCC
Q ss_conf 12333110037874258889999742469970205857886444203324599999999--8737801206323564144
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA--KNNSPCIVFVDEIDAVGRH 255 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a--~~~~p~iifiDeida~~~~ 255 (647)
-+-|-=||+.|.+||||+.||--+|...|.+-+- ++| -||++.... ++..|++ +---.+|.-.-
T Consensus 89 ~~~pliILigGtsGvGKSTlA~~LA~rLgI~~vi--sTD-----------~IREVmR~~~~~el~P~L-h~SSy~Awk~l 154 (306)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVI--GTD-----------SIREVMRKIISKELLPTL-HESSYTAWKSL 154 (306)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCH-----------HHHHHHHHCCCCCCCCHH-HCCCHHHHHCC
T ss_conf 6998799985899887899999999970988342--221-----------699999852483017513-22751310023
Q ss_pred CCCCCCCCCHH---HHHHHHHHHHHHCCC-----CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf 55789886268---898899899853032-----3577829999629810088333165642314100013478899999
Q gi|254780545|r 256 RGIGLGGGNDE---REQTLNQLLVEMDGF-----ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHIL 327 (647)
Q Consensus 256 r~~~~~~~~~e---~~~~ln~ll~~mdg~-----~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~ 327 (647)
+... .+..+- -+...+++..-+|+. .....+|+=|.-=.|..+++...- +--=.-+.+-++|.+.-++-|
T Consensus 155 ~~~~-~~~~~~I~Gf~~Q~~~V~~gI~aiI~Ra~~eg~slIIEGVHlvP~~i~~~~~~-~~~vi~fll~i~dEe~H~~RF 232 (306)
T PRK04220 155 RRPP-WEEPDHILGFERHVEPVLVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLN-MPNVFMFVLTLSDEETHKARF 232 (306)
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC-CCCEEEEEEEECCHHHHHHHH
T ss_conf 6787-78657999999999999999999999999729968998430377887777643-883899999978889999999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 99854887773211024544120379899999999987645532024210456899975013
Q gi|254780545|r 328 MVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKIL 389 (647)
Q Consensus 328 ~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~ 389 (647)
..-.+.... ..+ ++...|.. |..+-+.-.-.|-+.+-+.|...|+++++++++
T Consensus 233 ~~Ra~~~~R----~~~---rYl~~f~~--IR~IQ~yLv~~A~~~~vPiI~N~~id~tv~~i~ 285 (306)
T PRK04220 233 YARARVSKR----PAE---RYLKHFDE--IREIQDYIVEKAKEHGVPVIENVSIEETVDKIL 285 (306)
T ss_pred HHHCCCCCC----CHH---HHHHHHHH--HHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHH
T ss_conf 985044789----878---99997999--999999999998880998106866899999999
No 448
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=94.08 E-value=0.044 Score=34.03 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCC--CEEECCCCCHHHHHHHHHHHCCCCCCEEC--CCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999874335676642012333--11003787425888999974246997020--58578864442033245999999998
Q gi|254780545|r 162 EIVDFLCDPQKFKRLGGRIPH--GVLLVGPPGTGKTLLARAVAGEANVPFFT--ISGSDFVELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 162 ~~v~~l~~~~~~~~~g~~~p~--g~ll~GppGtGKTlla~a~a~e~~~~f~~--~~~s~~~~~~~g~g~~~vr~lf~~a~ 237 (647)
|++.||..-+.|-+ .+|| -+++||||-|||+|++-.+-.=.+-..+| -|.|.|==.= ...++| .|-+.|
T Consensus 244 efi~Fl~alk~fLk---g~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ViSfvNskShFWLqP--L~daKi-allDDA- 316 (432)
T pfam00519 244 EFISFLSALKDFLK---GIPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFVNSKSHFWLQP--LADAKI-ALLDDA- 316 (432)
T ss_pred CHHHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCC--HHHCCE-EEEECC-
T ss_conf 39999999999964---89852469998999966768999999984986999614877302273--532746-422066-
Q ss_pred HHCCHHEEHHH
Q ss_conf 73780120632
Q gi|254780545|r 238 NNSPCIVFVDE 248 (647)
Q Consensus 238 ~~~p~iifiDe 248 (647)
..||=-+||-
T Consensus 317 -T~~CW~Y~D~ 326 (432)
T pfam00519 317 -THACWDYIDT 326 (432)
T ss_pred -CHHHHHHHHH
T ss_conf -0888999999
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.08 E-value=0.17 Score=29.85 Aligned_cols=104 Identities=20% Similarity=0.386 Sum_probs=56.8
Q ss_pred CCCEEECCCCCHHHHHHHHHHHC-----CCC----------CCEE-----CCCHHH-H---HHHHHHCCHHHHHHHHHHH
Q ss_conf 33110037874258889999742-----469----------9702-----058578-8---6444203324599999999
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAG-----EAN----------VPFF-----TISGSD-F---VELFVGVGASRVRDMFEQA 236 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~-----e~~----------~~f~-----~~~~s~-~---~~~~~g~g~~~vr~lf~~a 236 (647)
.+.+++.||=..|||.+-|+++- .+| +|+| .+..++ + .+.|. .--.+++.+++.+
T Consensus 28 ~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~vpa~~~~~~~~~d~i~~~i~~~d~~~~~~S~F~-~E~~~~~~il~~~ 106 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS-SHMKNIARILQHA 106 (200)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHH-HHHHHHHHHHHHC
T ss_conf 339999889877509999999999999997778001100472665678888467336667787999-9999999999858
Q ss_pred HHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 8737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 237 KNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 237 ~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
. ..+.++|||+= ||++ ..|+......+|..+- . .+..+|.+|...+.-+
T Consensus 107 ~--~~sLvliDE~~-----~gTn----~~eg~~~a~a~l~~l~---~-~~~~~i~tTH~~eL~~ 155 (200)
T cd03280 107 D--PDSLVLLDELG-----SGTD----PVEGAALAIAILEELL---E-RGALVIATTHYGELKA 155 (200)
T ss_pred C--CCCEEEECCCC-----CCCC----HHHHHHHHHHHHHHHH---H-CCCEEEEECCCHHHHH
T ss_conf 8--88879755666-----8988----7899999999999998---5-7997999897178998
No 450
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.07 E-value=0.028 Score=35.44 Aligned_cols=34 Identities=38% Similarity=0.617 Sum_probs=27.1
Q ss_pred HHHHHCCCCC-C--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 6642012333-1--10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPH-G--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~-g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
|.-.|..+|| | +-|.||.|+|||-|.|.++|...
T Consensus 15 ~~l~~L~ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred EEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3651789898980999989999709999999967986
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.07 E-value=0.094 Score=31.69 Aligned_cols=67 Identities=28% Similarity=0.455 Sum_probs=39.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCC----CEECCC-HHHHHHH---------HHHCCHHHHHHHHHHHHHHCCHHEEHHHH
Q ss_conf 100378742588899997424699----702058-5788644---------42033245999999998737801206323
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANV----PFFTIS-GSDFVEL---------FVGVGASRVRDMFEQAKNNSPCIVFVDEI 249 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~----~f~~~~-~s~~~~~---------~~g~g~~~vr~lf~~a~~~~p~iifiDei 249 (647)
+|+.||.|.|||-+..|+..+..- ..+.+- ..+|+-. -+|....-..+..+.|-...|-+|+|.|+
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~~~sf~~~lr~aLR~~PDvI~vGEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECCCC
T ss_conf 99989999979999999998536378836999647377523676448873330788637999999998548885752777
Q ss_pred H
Q ss_conf 5
Q gi|254780545|r 250 D 250 (647)
Q Consensus 250 d 250 (647)
-
T Consensus 84 R 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
T ss_conf 8
No 452
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.07 E-value=0.033 Score=35.01 Aligned_cols=32 Identities=44% Similarity=0.678 Sum_probs=24.8
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.+...+++| +-+.||+|||||.|.|++||--.
T Consensus 18 ~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~ 51 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6177986998999999998809999999976999
No 453
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.06 E-value=0.25 Score=28.57 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--HHHHHHC
Q ss_conf 998789888886136875652335589999999--9998624
Q gi|254780545|r 464 ILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLA--RVMVTQF 503 (647)
Q Consensus 464 v~LgGRaAEei~fG~~~ittGAs~DL~~AT~iA--~~mV~~~ 503 (647)
.++.|-+.|-+.||..+.| ...+.+|-+.| ...+.+.
T Consensus 413 ~LF~~TI~~NI~~g~~~at---~eei~~a~k~a~~~d~I~~l 451 (567)
T COG1132 413 LLFSGTIRENIALGRPDAT---DEEIEEALKLANAHEFIANL 451 (567)
T ss_pred HHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHC
T ss_conf 7777669999745788999---99999999994863789847
No 454
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.06 E-value=0.41 Score=27.03 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=22.5
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...+++| +=|.||-|.|||-+.|.++|-..
T Consensus 26 vs~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~ 58 (306)
T PRK13536 26 LSFTVASGECFGLLGPNGAGKSTIARMILGMTS 58 (306)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 177885996999999989809999999967957
No 455
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.028 Score=35.47 Aligned_cols=29 Identities=41% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 123331--10037874258889999742469
Q gi|254780545|r 178 GRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 178 ~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
..+.+| +=+.||+|||||.|++++||=..
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9964897899984898988899999956567
No 456
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.98 E-value=0.028 Score=35.49 Aligned_cols=21 Identities=52% Similarity=0.816 Sum_probs=18.4
Q ss_pred ECCCCCHHHHHHHHHHHCCCC
Q ss_conf 037874258889999742469
Q gi|254780545|r 186 LVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 186 l~GppGtGKTlla~a~a~e~~ 206 (647)
|-||+|||||.|=+-+||=-.
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~ 21 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ 21 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCC
T ss_conf 978888747999999834587
No 457
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.96 E-value=0.067 Score=32.75 Aligned_cols=21 Identities=29% Similarity=0.749 Sum_probs=18.9
Q ss_pred EEECCCCCHHHHHHHHHHHCC
Q ss_conf 100378742588899997424
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e 204 (647)
|+|.|-||.|||.+|+.++..
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKK 22 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 789678999899999999999
No 458
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=93.94 E-value=0.063 Score=32.94 Aligned_cols=65 Identities=34% Similarity=0.461 Sum_probs=35.7
Q ss_pred CEEECCCCCHHHHHHHHHHHCCCCCC-EECCCHHH--H----------HHHHHHCCHHHHHH-HHHHHHHHCCHHEEHH
Q ss_conf 11003787425888999974246997-02058578--8----------64442033245999-9999987378012063
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEANVP-FFTISGSD--F----------VELFVGVGASRVRD-MFEQAKNNSPCIVFVD 247 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~~~~-f~~~~~s~--~----------~~~~~g~g~~~vr~-lf~~a~~~~p~iifiD 247 (647)
-+||.||+|.|||.|---+......+ +-++.... + +..+-=-|-.|+|. +++.-+..+.||||.=
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~~~~T~tS~~~n~~~~~~~~~~~~~~~~lvD~PGH~klR~~~~~~~~~~~~gIVfvV 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 5999907999899999999749988877888786206640246687279999879968899999999875498999999
No 459
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.93 E-value=0.032 Score=35.02 Aligned_cols=31 Identities=42% Similarity=0.734 Sum_probs=24.4
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+...+++| +-|.||+|||||.|.|++||=..
T Consensus 23 vsl~i~~Ge~~~llGpsG~GKTTllr~iaGl~~ 55 (358)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (358)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 277988998999999986369999999976999
No 460
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.93 E-value=0.036 Score=34.65 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=23.2
Q ss_pred CCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 123331--1003787425888999974246
Q gi|254780545|r 178 GRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 178 ~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
..+++| +-|.||+|||||.|.|+++|=.
T Consensus 45 l~I~~GEi~~lvGpSGsGKSTLLr~i~GL~ 74 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 488799899999999734999999997599
No 461
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.033 Score=34.99 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 123331--100378742588899997424
Q gi|254780545|r 178 GRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 178 ~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
..+.+| +-+.||+|||||.|+|+++|-
T Consensus 33 ~~i~~GE~l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 33 LTLKSGETVALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 58889989999999997799999999669
No 462
>KOG3354 consensus
Probab=93.90 E-value=0.029 Score=35.33 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=29.6
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf 31100378742588899997424699702058578864
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~ 219 (647)
--+++.|+.||||+..++|++.+.+++|+ .|-+|..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~Hp 48 (191)
T KOG3354 13 YVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLHP 48 (191)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCC--CCCCCCC
T ss_conf 05999835887744599999998588624--5555798
No 463
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.89 E-value=0.2 Score=29.32 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=40.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf 1003787425888999974246-99702058578864---------442033245999999998737801206
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV 246 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi 246 (647)
|++.|++|+|||-|.+.+.+.- ......+-|.++.. .|-=.|..+.|.+...--+.+-+|||+
T Consensus 2 I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~~~~i~~~~~~l~iwDt~G~e~~~~l~~~y~~~~~~ii~V 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 8999999986999999997599988616732505899998999999997983587799999874686368751
No 464
>KOG1803 consensus
Probab=93.88 E-value=0.016 Score=37.21 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=13.4
Q ss_pred CCEEECCCCCHHHHHHH
Q ss_conf 31100378742588899
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLA 198 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla 198 (647)
.=.+.+||||||||..-
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CCEEEECCCCCCCEEEH
T ss_conf 83575579988840439
No 465
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.87 E-value=0.041 Score=34.32 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=23.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCH
Q ss_conf 1003787425888999974246997020585
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~ 214 (647)
+.|+||+|+|||-|++.+..+..-.+++++.
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~ 34 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISA 34 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998999889999999999768994488704
No 466
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.83 E-value=0.095 Score=31.64 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHH--------HH---HHHHHHHHHCCHHEEHHH
Q ss_conf 331100378742588899997424699702058578864442033245--------99---999999873780120632
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASR--------VR---DMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~--------vr---~lf~~a~~~~p~iifiDe 248 (647)
.|-|-+.||-.||||.|++++|.--+.++--.-|-+|+.-+.|-+++- ++ +.-+.|.+.+|.|+|||-
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~v~fiDT 86 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANKVAFIDT 86 (187)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 5135564576657179999999996887312778999999848964231043899986157888898727784599734
No 467
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.79 E-value=0.04 Score=34.36 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=86.9
Q ss_pred HHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEEECCCCH-H---HHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999970991599998897999995798069998268827-9---999999-779828998568652189999999999
Q gi|254780545|r 30 QFIKDVDAGRVRKISVIGTHITGFYVNGESSFQTYMPLVGS-K---LLDKLQ-SKDIEISSRPVNDGSPGLLSYLGSWFP 104 (647)
Q Consensus 30 eFlk~Le~g~V~sV~I~~~~i~~~~~~g~~~~~t~~p~~~~-~---l~~~L~-e~~V~v~~~~~~~~s~~~~~iL~~~LP 104 (647)
++..+|++-.|.+|.|++..-..+-..|... ...+..+. . +...+- ..+-.++.. .+. +..-||
T Consensus 26 ~l~~~L~Dp~VtEI~iN~~~~Vwver~G~~~--~~~~~l~~~~~~~~i~~lA~~~g~~i~~~-----~Pi----~da~Lp 94 (320)
T PRK13894 26 ELLAALNDPKTVEIMLNADGKLWLERLGEPM--RCIGTLRVAQAQAIIETIAGYHGKEVTRS-----KPI----LEGELP 94 (320)
T ss_pred HHHHHHCCCCCEEEEECCCCEEEEEECCEEE--ECCCCCCHHHHHHHHHHHHHHHCCEECCC-----CCE----EEEEEC
T ss_conf 8999717999679998699959999489058--51676899999999999999809874678-----966----999908
Q ss_pred HHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999985167----78877767663210000112422569889852889999999998743356766420123
Q gi|254780545|r 105 LVLVVLVWMFLMRQIQG----GGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180 (647)
Q Consensus 105 liLli~i~~fl~rr~~g----Gg~~~~msfGKSkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~ 180 (647)
+ - -.|.+. --.+..+++-| +.....|.+|.....-.-. +..+||+ .-++-
T Consensus 95 ~---d------G~R~~~~~pP~~~~~~~sIRk-------~~~~~~tL~dlv~~G~~~~---~~a~~L~-------~~V~~ 148 (320)
T PRK13894 95 L---D------GSRFAGQLPPVVPAPTFAIRK-------KAVAIFTLDQYVERGIMTA---EQREAII-------AAVRA 148 (320)
T ss_pred C---C------CEEEEEECCCCCCCCEEEEEC-------CCCCCCCHHHHHHCCCCCH---HHHHHHH-------HHHHC
T ss_conf 9---9------889999878878996599968-------6899999999987699999---9999999-------99972
Q ss_pred CCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCC-HHHH-------HHHHHHCCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf 33110037874258889999742469-----9702058-5788-------644420332459999999987378012063
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTIS-GSDF-------VELFVGVGASRVRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 181 p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~-~s~~-------~~~~~g~g~~~vr~lf~~a~~~~p~iifiD 247 (647)
-+.+|..|+.|+|||-|.+|+.++.- --.+.+- ..++ +.++ ..++-..++|.+.|-...|--|++-
T Consensus 149 r~nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL~~~~~n~v~~~-~~~~vt~~~Ll~~aLR~rPDRIivG 227 (320)
T PRK13894 149 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYH-TSIDVNMTALLKTTLRMRPDRILVG 227 (320)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 875899858886568999999863202695201775258788078777735764-4788689999999736799858766
Q ss_pred HH
Q ss_conf 23
Q gi|254780545|r 248 EI 249 (647)
Q Consensus 248 ei 249 (647)
|+
T Consensus 228 Ev 229 (320)
T PRK13894 228 EV 229 (320)
T ss_pred CC
T ss_conf 54
No 468
>PRK10646 putative ATPase; Provisional
Probab=93.79 E-value=0.046 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=26.5
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 0123331--10037874258889999742469970
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPF 209 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f 209 (647)
+..++.| ++|.|+=|.|||.|+|+++...|+.-
T Consensus 22 a~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~ 56 (153)
T PRK10646 22 AKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQG 56 (153)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 97689997999988887899999999999849978
No 469
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=93.73 E-value=0.023 Score=36.13 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=19.8
Q ss_pred EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 10037874258889999742469
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+++.||||+|||-|.+.++.++.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~ 24 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLK 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89978999889999999999998
No 470
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.73 E-value=0.15 Score=30.22 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=36.6
Q ss_pred EEECCCCCHHHHHHHHHHHCC-CCCCEE------CCCHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCHHEEH-
Q ss_conf 100378742588899997424-699702------0585788---------64442033245999999998737801206-
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGE-ANVPFF------TISGSDF---------VELFVGVGASRVRDMFEQAKNNSPCIVFV- 246 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e-~~~~f~------~~~~s~~---------~~~~~g~g~~~vr~lf~~a~~~~p~iifi- 246 (647)
|++.|++|+|||-|-+.+... ....+. .+-|.++ +..|-=-|..+.|.+...--+.+-+|||+
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~Vv 81 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999888899998875036767776554035313268999989999999968987888789987428987899998
Q ss_pred H
Q ss_conf 3
Q gi|254780545|r 247 D 247 (647)
Q Consensus 247 D 247 (647)
|
T Consensus 82 D 82 (167)
T cd04160 82 D 82 (167)
T ss_pred E
T ss_conf 6
No 471
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.042 Score=34.21 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=23.1
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 0123331--1003787425888999974246
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
...+++| +-+.||+|||||.|.|++||-.
T Consensus 19 s~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~ 49 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8798899899999999635999999997499
No 472
>PRK01184 hypothetical protein; Provisional
Probab=93.71 E-value=0.045 Score=34.01 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=26.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH
Q ss_conf 10037874258889999742469970205857886
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~ 218 (647)
|-|.|+||+||+..|+ ++.+.|+|.++.+ +.+
T Consensus 4 IGlTG~iGSGKstva~-i~~e~G~~vi~~~--Div 35 (183)
T PRK01184 4 IIVTGMPGSGKGEFSK-IARELGIPVVVMG--DVI 35 (183)
T ss_pred EEEECCCCCCHHHHHH-HHHHCCCEEEECC--HHH
T ss_conf 9996899887899999-9997799399860--778
No 473
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.043 Score=34.13 Aligned_cols=31 Identities=48% Similarity=0.786 Sum_probs=24.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
....+++| +-+.||+|||||.|.+.++|=-.
T Consensus 21 is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 386988998999999999779999999976999
No 474
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.68 E-value=0.033 Score=34.97 Aligned_cols=34 Identities=38% Similarity=0.664 Sum_probs=24.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 66420123331--10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
...+-.++|+| +-+.||+|||||-|.++++|...
T Consensus 17 L~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 647699986999999999999809999999855565
No 475
>PRK13768 GTPase; Provisional
Probab=93.65 E-value=0.043 Score=34.13 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 3331100378742588899997424
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e 204 (647)
++.+++..||||+|||.+.+++...
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~~ 25 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSDW 25 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9718999899999889999999999
No 476
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.045 Score=33.98 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=24.6
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.+...+++| +-+.||+|||||.|.+.++|=..
T Consensus 19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~ 52 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 0276886998999999999569999999975999
No 477
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.57 E-value=0.14 Score=30.42 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=65.0
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH-HHH
Q ss_conf 3331100378742588899997424699702058578864---------442033245999999998737801206-323
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV-DEI 249 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi-Dei 249 (647)
-+.-||+.|-.|.|||-+-..+.++.-.....+.|....+ .|---|..++|.+...--..+-+|||+ |--
T Consensus 16 ke~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~~Yy~~~~~iIfVVDss 95 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY 95 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 61479999658898899999980699753057878864899999999999988987778899998821675899997268
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 5641445578988626889889989985303235778299996298100
Q gi|254780545|r 250 DAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 250 da~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
| +.| -+|....|..+|.+-+ -.+..++|+| |.-|.
T Consensus 96 D---~~r-------~~eak~~L~~ll~~~~--l~~~PlLila--NKqDl 130 (184)
T smart00178 96 D---KER-------FAESKRELDALLSDEE--LATVPFLILG--NKIDA 130 (184)
T ss_pred C---HHH-------HHHHHHHHHHHHHHHH--HCCCCEEEEE--ECCCC
T ss_conf 6---889-------9999999999864676--5597099999--75677
No 478
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.12 Score=31.03 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 899999999999878
Q gi|254780545|r 454 TYVWMTSRLTILMGG 468 (647)
Q Consensus 454 tk~~l~~~i~v~LgG 468 (647)
....+...+.+.+.+
T Consensus 571 ~~~~i~~~~l~~~~~ 585 (845)
T COG1643 571 RAPWIIAALLVQTSA 585 (845)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 658899999875313
No 479
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=93.55 E-value=0.052 Score=33.54 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 5689997501368
Q gi|254780545|r 379 QEFEDAKDKILMG 391 (647)
Q Consensus 379 ~dl~~A~~rv~~G 391 (647)
.|+...+++...|
T Consensus 455 ~dl~~~l~~~~~~ 467 (812)
T PRK11664 455 SDLSVALSRNQPG 467 (812)
T ss_pred CCHHHHHHHHCCC
T ss_conf 4799998653434
No 480
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.047 Score=33.86 Aligned_cols=30 Identities=43% Similarity=0.653 Sum_probs=23.7
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
+...+++| +-+.||+|||||.|.++++|=.
T Consensus 19 vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~ 50 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 17488799899999999983999999997799
No 481
>PRK08694 consensus
Probab=93.54 E-value=0.24 Score=28.74 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCC------CCCEECCC
Q ss_conf 01233311003787425888999974246------99702058
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEA------NVPFFTIS 213 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~------~~~f~~~~ 213 (647)
|.++-.=+++-|-||.|||-||--+|..+ .|-|||.-
T Consensus 214 Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLE 256 (468)
T PRK08694 214 GLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSME 256 (468)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8887847999617865378999999999998479847997788
No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.53 E-value=0.61 Score=25.78 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
Q ss_conf 99999998737801206323564144557898862688988998998530323577829999629810088333165642
Q gi|254780545|r 230 RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRF 309 (647)
Q Consensus 230 r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRf 309 (647)
|-...+|-.+.|.||+-||=-+ .- ..+..+.+-.||.++ ....|..+|-+|..|+.-. +.
T Consensus 150 RVAIARAL~~~P~iilADEPTg--------nL--D~~t~~~V~~ll~~~---~~~~g~tii~VTHD~~lA~-------~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTG--------NL--DSKTAKEVLELLREL---NKERGKTIIMVTHDPELAK-------YA 209 (226)
T ss_pred HHHHHHHHHCCCCEEEEECCCC--------CC--CHHHHHHHHHHHHHH---HHHCCCEEEEECCCHHHHH-------HC
T ss_conf 9999999824998699607666--------58--867899999999999---8746989999908989997-------48
Q ss_pred CCEEEEC
Q ss_conf 3141000
Q gi|254780545|r 310 DRQITVP 316 (647)
Q Consensus 310 d~~i~~~ 316 (647)
||.|++.
T Consensus 210 dr~i~l~ 216 (226)
T COG1136 210 DRVIELK 216 (226)
T ss_pred CEEEEEE
T ss_conf 9899984
No 483
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.51 E-value=0.04 Score=34.40 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999989999999999988
Q gi|254780545|r 553 YQKAKSIIQEKNDNFVAIAEALLE 576 (647)
Q Consensus 553 y~~a~~iL~~n~~~l~~la~~Lle 576 (647)
|.-+.=++.-.|.-|+.+|..++.
T Consensus 486 y~Gtvl~VSHDr~fl~~~~~~~~~ 509 (632)
T PRK11147 486 YQGTLLLVSHDRQFVDNTVTECWI 509 (632)
T ss_pred CCCEEEEEECCHHHHHHHCCEEEE
T ss_conf 898399997989999853456999
No 484
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=93.50 E-value=0.032 Score=35.11 Aligned_cols=134 Identities=23% Similarity=0.379 Sum_probs=81.0
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHCC--------CCCCCCEEEEEECC----CCCCCCHHHCCCC
Q ss_conf 80120632356414455789886268-89889989985303--------23577829999629----8100883331656
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLVEMDG--------FESSEGVILIAATN----RPDVLDAALLRPG 307 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~~mdg--------~~~~~~v~vi~aTn----~~~~lD~al~Rpg 307 (647)
--||||||||=||.+-+.+ +++|- ||=+==-||=-..| .-.++.|+.|||=- +|..|=|-|- |
T Consensus 269 ~GiiFIDEIDKIa~~~~e~--S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQ--G 344 (463)
T TIGR00390 269 SGIIFIDEIDKIAKKGKES--SGADVSREGVQRDLLPIVEGSTVNTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQ--G 344 (463)
T ss_pred CCCEEEECCHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCHHH--C
T ss_conf 7828985303542168886--78887655651011420226664310010422157876752320277766663110--6
Q ss_pred CCCCEEEECHHHHHHHHHHHHH--------HHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 4231410001347889999999--------85488777321102454412037989999999998764553202421045
Q gi|254780545|r 308 RFDRQITVPNPDIVGREHILMV--------HSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQ 379 (647)
Q Consensus 308 Rfd~~i~~~~P~~~~r~~i~~~--------~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~ 379 (647)
||--+++..--+.+.=..||.- |-.=+. .++|+++ ||---|..|. |+|.++ -...+.|.-.
T Consensus 345 RfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~-~eGv~i~--------F~d~AI~~iA-e~ay~~-N~~teniGAR 413 (463)
T TIGR00390 345 RFPIRVELEALTVDDFERILTEPKNSLIKQYQALLK-VEGVNIE--------FSDEAIKKIA-ELAYNV-NQKTENIGAR 413 (463)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCEE--------ECHHHHHHHH-HHHHHH-CCCCCCCCCC
T ss_conf 673778767632999999620834368999999887-6276403--------3556899999-999981-6442334650
Q ss_pred HHHHHHHHCC
Q ss_conf 6899975013
Q gi|254780545|r 380 EFEDAKDKIL 389 (647)
Q Consensus 380 dl~~A~~rv~ 389 (647)
-|.--++|++
T Consensus 414 RLHTv~E~ll 423 (463)
T TIGR00390 414 RLHTVLERLL 423 (463)
T ss_pred HHHHHHHHHH
T ss_conf 4668999999
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.49 E-value=0.049 Score=33.74 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=25.3
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 420123331--10037874258889999742469
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
.+...+++| +-+.||.|||||.|.++++|-..
T Consensus 23 dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6078986998999999999869999999972898
No 486
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.044 Score=34.06 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.3
Q ss_pred EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 1003787425888999974246
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~ 205 (647)
+-+.||+|||||.|.+.+||=.
T Consensus 26 ~~iiGpSGsGKSTll~~i~GL~ 47 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999735999999998499
No 487
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=93.42 E-value=0.42 Score=26.98 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=18.9
Q ss_pred HCCCCCCE--EECCCCCHHHHHHHHHHHCCC
Q ss_conf 01233311--003787425888999974246
Q gi|254780545|r 177 GGRIPHGV--LLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 177 g~~~p~g~--ll~GppGtGKTlla~a~a~e~ 205 (647)
-..+++|= =|.||-|.|||.+-+.++|-.
T Consensus 25 s~~V~~Gei~gllGpNGAGKTTli~~l~Gl~ 55 (304)
T PRK13537 25 SFHVQPGECFGLLGPNGAGKTTTLKMLLGLT 55 (304)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7788699599999998972999999997795
No 488
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=93.41 E-value=0.049 Score=33.70 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=28.8
Q ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 2422569889-8528899999999987433567664201233311003787425888999974246
Q gi|254780545|r 141 NVGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 141 ~~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~ 205 (647)
++++.++.|+ .|.+.....+.+-|++ -.++=+=+-+.||+|||||-|++.++|=.
T Consensus 356 ~~p~L~~~~ls~~~pg~~~~vl~~V~L----------~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l 411 (566)
T TIGR02868 356 DKPTLELRDLSVGYPGAPPNVLDGVSL----------DLPPGERVAILGPSGSGKSTLLATLAGLL 411 (566)
T ss_pred CCCEEEEEEEEEECCCCCHHHHCCCCC----------CCCCCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875078987765269873465427864----------11388608986688765789999998402
No 489
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=93.37 E-value=0.096 Score=31.62 Aligned_cols=70 Identities=26% Similarity=0.417 Sum_probs=40.1
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC-CCCCEECCCHH-------HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHH
Q ss_conf 0123331100378742588899997424-69970205857-------88644420332459999999987378012063
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE-ANVPFFTISGS-------DFVELFVGVGASRVRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e-~~~~f~~~~~s-------~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiD 247 (647)
.-.||-=|-..||||+|||.|-|.+... .+-+.-.+.|+ .-.=-|+-. ..-+..+-+.|+-.-=+++.||
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc-~nDi~smiD~AKvADlVLl~iD 112 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIEC-PNDINAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEC-CCHHHHHHHHHHHHHEEEEEEC
T ss_conf 89999699998989977889999999998544375578887999468426899974-8609999878876433688861
No 490
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.36 E-value=0.052 Score=33.55 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=23.6
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 6420123331--100378742588899997424
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
..+...+|+| +.+.||.|||||-|+|.++|=
T Consensus 26 ~~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 645899859989999999999799999999649
No 491
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.35 E-value=0.053 Score=33.47 Aligned_cols=31 Identities=48% Similarity=0.811 Sum_probs=24.7
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 20123331--10037874258889999742469
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~ 206 (647)
....+++| +-|.||.|||||.|.|++||-..
T Consensus 21 vsl~i~~GE~~~llGpSGsGKSTLlr~iaGL~~ 53 (352)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (352)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 376999998999999998469999999976999
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=93.33 E-value=0.13 Score=30.73 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=113.4
Q ss_pred HHHCCEEEEEEECCEEEEEEECCCEE--EEEEECC---CCHHHHHHHHHCCCEEE--EEECCC-CCHHHHHHHHH-----
Q ss_conf 97099159999889799999579806--9998268---82799999997798289--985686-52189999999-----
Q gi|254780545|r 35 VDAGRVRKISVIGTHITGFYVNGESS--FQTYMPL---VGSKLLDKLQSKDIEIS--SRPVND-GSPGLLSYLGS----- 101 (647)
Q Consensus 35 Le~g~V~sV~I~~~~i~~~~~~g~~~--~~t~~p~---~~~~l~~~L~e~~V~v~--~~~~~~-~s~~~~~iL~~----- 101 (647)
|++..|.+|-|+......++.+.... .....|. .+-+....|-..=..++ .+...+ ..+.+..-|..
T Consensus 2 L~~~~v~EI~iNrP~eVW~lE~~~gw~~~~~d~P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~RvQ 81 (328)
T TIGR02788 2 LDDEDVTEICINRPGEVWVLEGRGGWRTQRFDVPERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERVQ 81 (328)
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 78888407999869179999568965888872675224418999999999887653786201022863788869994799
Q ss_pred -HHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHH-----------------HHHHHHHHHHHHH
Q ss_conf -99999999999999985167788-7776766321000011242256988-----------------9852889999999
Q gi|254780545|r 102 -WFPLVLVVLVWMFLMRQIQGGGA-RGAMGFGKSKAKLLSGNVGSVTFKD-----------------VAGVDEAKEDLQE 162 (647)
Q Consensus 102 -~LPliLli~i~~fl~rr~~gGg~-~~~msfGKSkAk~~~~~~~~v~f~d-----------------v~g~~~~k~~~~~ 162 (647)
.+|.... ++ .-.+++-| |...+.+++| -..+.+..++|.|
T Consensus 82 ~V~PPAc~--------------~~eTvs~tIRK-------pS~~~~sL~dy~~~G~F~~ar~~~~~~~~~~~d~~~~L~e 140 (328)
T TIGR02788 82 IVIPPACE--------------NDETVSITIRK-------PSLVDLSLDDYEEKGFFDTARAVVVPASTELSDKDEELLE 140 (328)
T ss_pred EEECCCCC--------------CCCEEEEEEEC-------CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 98068758--------------98858999952-------6444554799962798544777631443443468999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCH-HHHHHHH----HHCCHH
Q ss_conf 9987433567664201233311003787425888999974246----------997020585-7886444----203324
Q gi|254780545|r 163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISG-SDFVELF----VGVGAS 227 (647)
Q Consensus 163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~-s~~~~~~----~g~g~~ 227 (647)
..+- .+-+.|-++-+.--|-|+++|-+|+|||-+-||+-++- +++=+.++. +.-|-++ ||.|.+
T Consensus 141 l~~~-g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~ 219 (328)
T TIGR02788 141 LLDA-GDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSA 219 (328)
T ss_pred HHHC-CCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9862-888799999987389199990689718999999973276225278885201147888986456553464234435
Q ss_pred H--HHHHHHHHHHHCCHHEEHHHH
Q ss_conf 5--999999998737801206323
Q gi|254780545|r 228 R--VRDMFEQAKNNSPCIVFVDEI 249 (647)
Q Consensus 228 ~--vr~lf~~a~~~~p~iifiDei 249 (647)
+ ..+|-+.+=+..|==||+=|+
T Consensus 220 ~vt~~~Ll~scLRMrPDRI~LgEL 243 (328)
T TIGR02788 220 KVTPKDLLESCLRMRPDRILLGEL 243 (328)
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf 689899999971177405767430
No 493
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=93.30 E-value=0.094 Score=31.67 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=32.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 1003787425888999974246---99702058578864442033245999999998737801206323564
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~ 252 (647)
.+++.|+|+|||.++-+++.+. +-.++.+..+ +.|.++..+.- +|++||..-.
T Consensus 21 ~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~--------------~~L~~Q~~~~~--lii~DE~H~~ 76 (103)
T pfam04851 21 GLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPR--------------KDLLEQALEEF--VIIIDEAHHS 76 (103)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC--------------HHHHHHHHHHH--HHHHHHHHHC
T ss_conf 69995899987999999999998469929999082--------------99999999965--6460163523
No 494
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.27 E-value=0.057 Score=33.24 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred CCEEECCCCCHHHHHHHHHHHCC
Q ss_conf 31100378742588899997424
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e 204 (647)
--+++.||+||||+.|-|++|.=
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 54887678876688999999813
No 495
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=93.26 E-value=0.044 Score=34.06 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 1003787425888999974246
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~ 205 (647)
+++.||||+|||.|+..++..+
T Consensus 18 ~~I~g~~g~GKt~l~~~i~~~~ 39 (213)
T pfam00006 18 IGIFGGSGTGKTVLLGMIARNA 39 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7787899998899999999856
No 496
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.26 E-value=0.21 Score=29.19 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=33.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH---------HHHHHCCHHHHHHHHHHHHHHCCHHEEH
Q ss_conf 10037874258889999742469970205857886---------4442033245999999998737801206
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV---------ELFVGVGASRVRDMFEQAKNNSPCIVFV 246 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~---------~~~~g~g~~~vr~lf~~a~~~~p~iifi 246 (647)
|++.|+||+|||-|-+.+.+..-.....+-|.++. ..|-=-|..+.|.+...--+.+-++||.
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~~~~~pTig~~~~~i~~~~~~l~iwDt~G~~~~~~~~~~y~~~a~~~i~V 73 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 999999999889999999539988744560740899984889999998899722144899872768776899
No 497
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.26 E-value=0.05 Score=33.65 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=26.9
Q ss_pred HHHHHCCCCCC-------EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 66420123331-------10037874258889999742469
Q gi|254780545|r 173 FKRLGGRIPHG-------VLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 173 ~~~~g~~~p~g-------~ll~GppGtGKTlla~a~a~e~~ 206 (647)
+..+-..+++| +-|.||.|||||-|.|.++|-..
T Consensus 10 l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 15068985688465798999997999769999999977878
No 498
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.25 E-value=0.056 Score=33.30 Aligned_cols=20 Identities=50% Similarity=0.903 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHHHHC
Q ss_conf 10037874258889999742
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG 203 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~ 203 (647)
+-|.||.|||||.|.+.+||
T Consensus 46 ~~llGpSGsGKSTLlr~iaG 65 (378)
T PRK09452 46 LTLLGPSGCGKTTVLRLIAG 65 (378)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99998999769999999976
No 499
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.23 E-value=0.16 Score=30.05 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf 100378742588899997424699702058578864---------44203324599999999873780120632356414
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~ 254 (647)
+|+.|.+|.|||.|-+.+-..--.+-..+.|.++.. .|---|..+.|.+...--+.+-+|||+ +|
T Consensus 3 ililG~~~sGKTsll~~l~~~~~~~~~pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~V--vD---- 76 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV--VD---- 76 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEE--EE----
T ss_conf 999999999989999999729967758968701799998989999997899721465678647687389999--97----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 4557898862688988998998530323577829999629810088
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
..+.++-+..-..|.++=.-....++.++-.-|..|.-+
T Consensus 77 -------~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~ 115 (159)
T cd04150 77 -------SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred -------CCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCC
T ss_conf -------777789999999999996235336982999997566778
No 500
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.45 Score=26.77 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----------------------------------------------
Q ss_conf 420123331100378742588899997424699-----------------------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV----------------------------------------------- 207 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~----------------------------------------------- 207 (647)
.+-+++-+-+-++||+|||||-|..+++|....
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~ 420 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP 420 (559)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCC
T ss_conf 06754896799988999978999999847577778448889931000687788867246279984056418877731687
Q ss_pred -----------------CEECCCHHHHHHHHHHCCHH------HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf -----------------70205857886444203324------5999999998737801206323564144557898862
Q gi|254780545|r 208 -----------------PFFTISGSDFVELFVGVGAS------RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264 (647)
Q Consensus 208 -----------------~f~~~~~s~~~~~~~g~g~~------~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~ 264 (647)
.|+.. ++=...-+|+|-+ +-|-.-.+|=-+-+.++++||--| +-.
T Consensus 421 ~~s~e~i~~al~~a~l~~~v~~--p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA----------~LD 488 (559)
T COG4988 421 DASDEEIIAALDQAGLLEFVPK--PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA----------HLD 488 (559)
T ss_pred CCCHHHHHHHHHHHCHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC----------CCC
T ss_conf 6789999999998257876167--7764330215888778999999999998558888898548756----------798
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf 6889889989985303235778299996298100883331656423141000
Q gi|254780545|r 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316 (647)
Q Consensus 265 ~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~ 316 (647)
-|.|+.+-+.|.++- ++-.|+-+|.|+..+- +-|+.+.++
T Consensus 489 ~etE~~i~~~l~~l~-----~~ktvl~itHrl~~~~-------~~D~I~vld 528 (559)
T COG4988 489 AETEQIILQALQELA-----KQKTVLVITHRLEDAA-------DADRIVVLD 528 (559)
T ss_pred HHHHHHHHHHHHHHH-----HCCEEEEEECCHHHHH-------CCCEEEEEC
T ss_conf 767999999999997-----2786999976737785-------499899964
Done!