HHsearch alignment for GI: 254780545 and conserved domain: pfam00448

Probab=97.26  E-value=0.001  Score=45.95  Aligned_cols=114  Identities=27%  Similarity=0.345  Sum_probs=57.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHHHCC-----CCCCEECCC-----HHHHHHHHH---HC------C----HHHHHHHHHHHH
Q ss_conf             331100378742588899997424-----699702058-----578864442---03------3----245999999998
Q gi|254780545|r  181 PHGVLLVGPPGTGKTLLARAVAGE-----ANVPFFTIS-----GSDFVELFV---GV------G----ASRVRDMFEQAK  237 (647)
Q Consensus       181 p~g~ll~GppGtGKTlla~a~a~e-----~~~~f~~~~-----~s~~~~~~~---g~------g----~~~vr~lf~~a~  237 (647)
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~   80 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK   80 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96999989999988999999999999779928999758776889999999998639817814877787899999999988


Q ss_pred             HHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCC
Q ss_conf             737801206323564144557898862688988998998530323577829999629810088333165
Q gi|254780545|r  238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRP  306 (647)
Q Consensus       238 ~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~Rp  306 (647)
T Consensus        81 ~~~~D~IlIDT---aGr~-------~~d~--~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~  137 (196)
T pfam00448        81 AENYDVVLVDT---AGRL-------QNDK--NLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFN  137 (196)
T ss_pred             HCCCCEEEEEC---CCCC-------CCCH--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             46899999989---9987-------4767--78999999985228730289985677821378999876