HHsearch alignment for GI: 254780545 and conserved domain: pfam00493
>pfam00493 MCM MCM2/3/5 family.
Probab=98.77 E-value=4.9e-08 Score=77.17 Aligned_cols=158 Identities=28% Similarity=0.338 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHC
Q ss_conf 8985288999999-9998743356766420123--33110037874258889999742469-970205857886444203
Q gi|254780545|r 149 DVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGV 224 (647)
Q Consensus 149 dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~ 224 (647)
T Consensus 25 ~i~G~~~vK~ai~l~l~---gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss----~~GL 97 (327)
T pfam00493 25 SIYGHEDVKKAILLQLF---GGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS----AAGL 97 (327)
T ss_pred CCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----CCCC
T ss_conf 12498799999999980---8987658888620365118984699815609999999868870883177665----6776
Q ss_pred CHHHHHHHHH-----HHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CC
Q ss_conf 3245999999-----99873---7801206323564144557898862688988998998530---------3235--77
Q gi|254780545|r 225 GASRVRDMFE-----QAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SE 285 (647)
Q Consensus 225 g~~~vr~lf~-----~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~ 285 (647)
T Consensus 98 Ta~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~--------------~~d~saL~EAMEqqtVsIaKaGi~~tL~a 163 (327)
T pfam00493 98 TAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMN--------------EEDRVAIHEAMEQQTISIAKAGIVATLNA 163 (327)
T ss_pred EEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCC--------------HHHHHHHHHHHHHCEEEEECCCEEEEECC
T ss_conf 1589980688836983684775589827850055588--------------76799999999868177633853897258
Q ss_pred CEEEEEECCCCC-------------CCCHHHCCCCCCCCE-EEECHHHHHHHHHHHHH
Q ss_conf 829999629810-------------088333165642314-10001347889999999
Q gi|254780545|r 286 GVILIAATNRPD-------------VLDAALLRPGRFDRQ-ITVPNPDIVGREHILMV 329 (647)
Q Consensus 286 ~v~vi~aTn~~~-------------~lD~al~RpgRfd~~-i~~~~P~~~~r~~i~~~ 329 (647)
T Consensus 164 r~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLs--RFDLif~l~D~~~~~~D~~ia~~ 219 (327)
T pfam00493 164 RCSVLAAANPIFGRYDPKKSVAENINLPPPLLS--RFDLIFVLLDKPDEEKDEELAKH 219 (327)
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHC--CEEEEEEEECCCCHHHHHHHHHH
T ss_conf 717998527767737888898885589767745--01079884068986889999999