HHsearch alignment for GI: 254780545 and conserved domain: pfam00519
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=94.08 E-value=0.044 Score=34.03 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCC--CEEECCCCCHHHHHHHHHHHCCCCCCEEC--CCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999874335676642012333--11003787425888999974246997020--58578864442033245999999998
Q gi|254780545|r 162 EIVDFLCDPQKFKRLGGRIPH--GVLLVGPPGTGKTLLARAVAGEANVPFFT--ISGSDFVELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 162 ~~v~~l~~~~~~~~~g~~~p~--g~ll~GppGtGKTlla~a~a~e~~~~f~~--~~~s~~~~~~~g~g~~~vr~lf~~a~ 237 (647)
T Consensus 244 efi~Fl~alk~fLk---g~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ViSfvNskShFWLqP--L~daKi-allDDA- 316 (432)
T pfam00519 244 EFISFLSALKDFLK---GIPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFVNSKSHFWLQP--LADAKI-ALLDDA- 316 (432)
T ss_pred CHHHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCC--HHHCCE-EEEECC-
T ss_conf 39999999999964---89852469998999966768999999984986999614877302273--532746-422066-
Q ss_pred HHCCHHEEHHH
Q ss_conf 73780120632
Q gi|254780545|r 238 NNSPCIVFVDE 248 (647)
Q Consensus 238 ~~~p~iifiDe 248 (647)
T Consensus 317 -T~~CW~Y~D~ 326 (432)
T pfam00519 317 -THACWDYIDT 326 (432)
T ss_pred -CHHHHHHHHH
T ss_conf -0888999999