HHsearch alignment for GI: 254780545 and conserved domain: pfam00519

>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=94.08  E-value=0.044  Score=34.03  Aligned_cols=79  Identities=23%  Similarity=0.473  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC--CEEECCCCCHHHHHHHHHHHCCCCCCEEC--CCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             999874335676642012333--11003787425888999974246997020--58578864442033245999999998
Q gi|254780545|r  162 EIVDFLCDPQKFKRLGGRIPH--GVLLVGPPGTGKTLLARAVAGEANVPFFT--ISGSDFVELFVGVGASRVRDMFEQAK  237 (647)
Q Consensus       162 ~~v~~l~~~~~~~~~g~~~p~--g~ll~GppGtGKTlla~a~a~e~~~~f~~--~~~s~~~~~~~g~g~~~vr~lf~~a~  237 (647)
T Consensus       244 efi~Fl~alk~fLk---g~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ViSfvNskShFWLqP--L~daKi-allDDA-  316 (432)
T pfam00519       244 EFISFLSALKDFLK---GIPKKNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFVNSKSHFWLQP--LADAKI-ALLDDA-  316 (432)
T ss_pred             CHHHHHHHHHHHHC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCC--HHHCCE-EEEECC-
T ss_conf             39999999999964---89852469998999966768999999984986999614877302273--532746-422066-


Q ss_pred             HHCCHHEEHHH
Q ss_conf             73780120632
Q gi|254780545|r  238 NNSPCIVFVDE  248 (647)
Q Consensus       238 ~~~p~iifiDe  248 (647)
T Consensus       317 -T~~CW~Y~D~  326 (432)
T pfam00519       317 -THACWDYIDT  326 (432)
T ss_pred             -CHHHHHHHHH
T ss_conf             -0888999999