HHsearch alignment for GI: 254780545 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.42 E-value=0.058 Score=33.22 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=49.0
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHCCCC------CC----------------------------------EECCCH-
Q ss_conf 2012333110037874258889999742469------97----------------------------------020585-
Q gi|254780545|r 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEAN------VP----------------------------------FFTISG- 214 (647)
Q Consensus 176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~~------~~----------------------------------f~~~~~- 214 (647)
T Consensus 83 y~~qP~I~v-VYGPTG~GKSQLlRNlis~~lI~P~PETVfFItPq~~mIpp~E~~aWe~Ql~EGNY~~~~dgti~P~t~t 161 (370)
T pfam02456 83 YGLQPVIGV-VYGPTGCGKSQLLRNLLSCQLIQPIPETVFFITPQKDMIPPQEQTAWELQLCEGNYSCGPDGTIAPQTGT 161 (370)
T ss_pred CCCCCEEEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf 678744999-9889987789999998734667799972899767778679899999999987357767999746356575
Q ss_pred --HHHHHHHHHCC-------HHHHHHHHHHHHHHCCHHEEHHHH-HHHHCCCCC
Q ss_conf --78864442033-------245999999998737801206323-564144557
Q gi|254780545|r 215 --SDFVELFVGVG-------ASRVRDMFEQAKNNSPCIVFVDEI-DAVGRHRGI 258 (647)
Q Consensus 215 --s~~~~~~~g~g-------~~~vr~lf~~a~~~~p~iifiDei-da~~~~r~~ 258 (647)
T Consensus 162 ~~P~Fv~msy~d~t~~~Nldv~~p~NiF~~Aa~~GPIaIImDECMe~Lg~~~~I 215 (370)
T pfam02456 162 FRPRFVEMTYEDATSPENLDVNHPNNIFVQAAKNGPIAIIMDECMEKLGSHKSI 215 (370)
T ss_pred CCHHHEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHCCCCCH
T ss_conf 350030301777268335688980679999870598799879999986279865