HHsearch alignment for GI: 254780545 and conserved domain: pfam03215

>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.18  E-value=6.5e-05  Score=54.57  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH---------
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469970205857---------
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS---------  215 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s---------  215 (647)
T Consensus        16 ~~l~ELAV---HKKKV~eV~~WL~~--~~--~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~   88 (490)
T pfam03215        16 RRRDELAI---HKKKIAEVDHWLKA--VF--LESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNE   88 (490)
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHH--HH--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCH
T ss_conf             87899855---35439999999999--85--4777731899879899889999999999759689981486545677502


Q ss_pred             ----HHHHHHHHCCHHHHHHHHH----HHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             ----8864442033245999999----99873--------7801206323564144557898862688988998998530
Q gi|254780545|r  216 ----DFVELFVGVGASRVRDMFE----QAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD  279 (647)
Q Consensus       216 ----~~~~~~~g~g~~~vr~lf~----~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md  279 (647)
T Consensus        89 ~q~~d~~g~~~~~~~S~~-~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d~---------~~fr~~L~~~L~  157 (490)
T pfam03215        89 CQKPDFRGDCIVNSLSQM-EQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SDA---------EKFREVIREVLQ  157 (490)
T ss_pred             HHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CCH---------HHHHHHHHHHHH
T ss_conf             210121234576666377-776788762233565445788735999965887442-366---------999999999997


Q ss_pred             CCCCCCCEEEEEE-C------CCCC--------CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCC--CC
Q ss_conf             3235778299996-2------9810--------088333165642314100013478899999998548--87773--21
Q gi|254780545|r  280 GFESSEGVILIAA-T------NRPD--------VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAP--NV  340 (647)
Q Consensus       280 g~~~~~~v~vi~a-T------n~~~--------~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~--~~  340 (647)
T Consensus       158 s-~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i-~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~  235 (490)
T pfam03215       158 S-IWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI-DTITFNPIAPTFMKKALVRISVQEGKLKSPKSDS  235 (490)
T ss_pred             H-CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             0-8999879999704666677643323210786359888708896-3698688878899999999999857655675203


Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             10245441203798999999999876455320
Q gi|254780545|r  341 ILKTIARGTPGFSGADLRNLVNEAALMAARRN  372 (647)
Q Consensus       341 d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~  372 (647)
T Consensus       236 ~le~Ia~~----S~GDIRsAInsLQF~~~~~~  263 (490)
T pfam03215       236 KLEVICQE----AGGDLRSAINSLQFSSSGPN  263 (490)
T ss_pred             HHHHHHHH----CCCCHHHHHHHHHHHCCCCC
T ss_conf             89999986----48729999999998626898