HHsearch alignment for GI: 254780545 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.18 E-value=6.5e-05 Score=54.57 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHH---------
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857---------
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGS--------- 215 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s--------- 215 (647)
T Consensus 16 ~~l~ELAV---HKKKV~eV~~WL~~--~~--~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~ 88 (490)
T pfam03215 16 RRRDELAI---HKKKIAEVDHWLKA--VF--LESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNE 88 (490)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHH--HH--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCH
T ss_conf 87899855---35439999999999--85--4777731899879899889999999999759689981486545677502
Q ss_pred ----HHHHHHHHCCHHHHHHHHH----HHHHH--------CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----8864442033245999999----99873--------7801206323564144557898862688988998998530
Q gi|254780545|r 216 ----DFVELFVGVGASRVRDMFE----QAKNN--------SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279 (647)
Q Consensus 216 ----~~~~~~~g~g~~~vr~lf~----~a~~~--------~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md 279 (647)
T Consensus 89 ~q~~d~~g~~~~~~~S~~-~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d~---------~~fr~~L~~~L~ 157 (490)
T pfam03215 89 CQKPDFRGDCIVNSLSQM-EQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SDA---------EKFREVIREVLQ 157 (490)
T ss_pred HHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CCH---------HHHHHHHHHHHH
T ss_conf 210121234576666377-776788762233565445788735999965887442-366---------999999999997
Q ss_pred CCCCCCCEEEEEE-C------CCCC--------CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCC--CC
Q ss_conf 3235778299996-2------9810--------088333165642314100013478899999998548--87773--21
Q gi|254780545|r 280 GFESSEGVILIAA-T------NRPD--------VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAP--NV 340 (647)
Q Consensus 280 g~~~~~~v~vi~a-T------n~~~--------~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~--~~ 340 (647)
T Consensus 158 s-~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i-~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~ 235 (490)
T pfam03215 158 S-IWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI-DTITFNPIAPTFMKKALVRISVQEGKLKSPKSDS 235 (490)
T ss_pred H-CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 0-8999879999704666677643323210786359888708896-3698688878899999999999857655675203
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 10245441203798999999999876455320
Q gi|254780545|r 341 ILKTIARGTPGFSGADLRNLVNEAALMAARRN 372 (647)
Q Consensus 341 d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~ 372 (647)
T Consensus 236 ~le~Ia~~----S~GDIRsAInsLQF~~~~~~ 263 (490)
T pfam03215 236 KLEVICQE----AGGDLRSAINSLQFSSSGPN 263 (490)
T ss_pred HHHHHHHH----CCCCHHHHHHHHHHHCCCCC
T ss_conf 89999986----48729999999998626898