HHsearch alignment for GI: 254780545 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.62 E-value=0.011 Score=38.34 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=25.4
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCC
Q ss_conf 0123331100378742588899997424----699702058
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTIS 213 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~ 213 (647)
T Consensus 15 Gl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~s 55 (186)
T pfam03796 15 GLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFS 55 (186)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98888179999679998799999999999997099668754