HHsearch alignment for GI: 254780545 and conserved domain: pfam03969
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.36 E-value=2.5e-06 Score=64.82 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-ECCCHHHHHHH-------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf 2333110037874258889999742469970-20585788644-------420332459999999987378012063235
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPF-FTISGSDFVEL-------FVGVGASRVRDMFEQAKNNSPCIVFVDEID 250 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f-~~~~~s~~~~~-------~~g~g~~~vr~lf~~a~~~~p~iifiDeid 250 (647)
T Consensus 59 ~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~-~~dpl~~va~~l~~~-~~lLCfDEFq 136 (361)
T pfam03969 59 QPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQG-GDDPLPIAADRFANE-ARLLCFDEFE 136 (361)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC-CCEEEEEEEE
T ss_conf 99986898899888699999999986775344456678999999999999766-776389999999725-8779976356
Q ss_pred H--HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf 6--41445578988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r 251 A--VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM 328 (647)
Q Consensus 251 a--~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~ 328 (647)
T Consensus 137 V~DIa-----------D--AMIL~rLf~~L----f~~gvvlV~TSN~~----P~~LY~~GLqR~~FlPf------I~ll~ 189 (361)
T pfam03969 137 VDDIG-----------D--AMILGRLFEAL----FARGVSLVATSNTA----PEQLYRNGLNRQRFLPA------IDLLE 189 (361)
T ss_pred ECCHH-----------H--HHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHHHH
T ss_conf 16788-----------8--99999999999----97797899808999----89983687417788999------99999
Q ss_pred HHHCCCCCCCCCCHHH
Q ss_conf 9854887773211024
Q gi|254780545|r 329 VHSRNVPLAPNVILKT 344 (647)
Q Consensus 329 ~~~~~~~~~~~~d~~~ 344 (647)
T Consensus 190 ~~~~v~~l~~~~DYR~ 205 (361)
T pfam03969 190 SHFEVVRVDGPVDYRL 205 (361)
T ss_pred HHCEEEEECCCCCCCC
T ss_conf 8678998159878054