HHsearch alignment for GI: 254780545 and conserved domain: pfam03969

>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.36  E-value=2.5e-06  Score=64.82  Aligned_cols=137  Identities=23%  Similarity=0.266  Sum_probs=77.2

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-ECCCHHHHHHH-------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHH
Q ss_conf             2333110037874258889999742469970-20585788644-------420332459999999987378012063235
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPF-FTISGSDFVEL-------FVGVGASRVRDMFEQAKNNSPCIVFVDEID  250 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f-~~~~~s~~~~~-------~~g~g~~~vr~lf~~a~~~~p~iifiDeid  250 (647)
T Consensus        59 ~~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~-~~dpl~~va~~l~~~-~~lLCfDEFq  136 (361)
T pfam03969        59 QPVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQG-GDDPLPIAADRFANE-ARLLCFDEFE  136 (361)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHC-CCEEEEEEEE
T ss_conf             99986898899888699999999986775344456678999999999999766-776389999999725-8779976356


Q ss_pred             H--HHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHH
Q ss_conf             6--41445578988626889889989985303235778299996298100883331656423141000134788999999
Q gi|254780545|r  251 A--VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       251 a--~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~  328 (647)
T Consensus       137 V~DIa-----------D--AMIL~rLf~~L----f~~gvvlV~TSN~~----P~~LY~~GLqR~~FlPf------I~ll~  189 (361)
T pfam03969       137 VDDIG-----------D--AMILGRLFEAL----FARGVSLVATSNTA----PEQLYRNGLNRQRFLPA------IDLLE  189 (361)
T ss_pred             ECCHH-----------H--HHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHHHH
T ss_conf             16788-----------8--99999999999----97797899808999----89983687417788999------99999


Q ss_pred             HHHCCCCCCCCCCHHH
Q ss_conf             9854887773211024
Q gi|254780545|r  329 VHSRNVPLAPNVILKT  344 (647)
Q Consensus       329 ~~~~~~~~~~~~d~~~  344 (647)
T Consensus       190 ~~~~v~~l~~~~DYR~  205 (361)
T pfam03969       190 SHFEVVRVDGPVDYRL  205 (361)
T ss_pred             HHCEEEEECCCCCCCC
T ss_conf             8678998159878054