HHsearch alignment for GI: 254780545 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.71 E-value=2e-16 Score=137.84 Aligned_cols=191 Identities=25% Similarity=0.350 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
T Consensus 21 ~~l~e~vGQehl~~~l~~~i~a~~~~------~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~------ 87 (234)
T pfam05496 21 RRLDEYIGQEKVKENLKIFIEAAKKR------GEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 87 (234)
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHHHC------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH------
T ss_conf 97666069499999999999988742------7776-6278878999988899999998408753761426664------
Q ss_pred CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----------------CCCCEE
Q ss_conf 3245999999998737801206323564144557898862688988998998530323----------------577829
Q gi|254780545|r 225 GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE----------------SSEGVI 288 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~----------------~~~~v~ 288 (647)
T Consensus 88 ~~~di~~~l~~~~--~~~ILFIDEIHr~nK~q--------------qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~Ft 151 (234)
T pfam05496 88 KPGDLAAILTNLE--PGDVLFIDEIHRLNRAV--------------EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFT 151 (234)
T ss_pred HHHHHHHHHHHCC--CCCEEEEECHHHCCHHH--------------HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEE
T ss_conf 3899999998458--99889996654358768--------------8744553346169999636766324652689759
Q ss_pred EEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999629810088333165642314100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
T Consensus 152 LIgATTe~~~l~~pl~s--R~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~e-al~~IA~~s~G-d~R~ALnlLe~v~d 227 (234)
T pfam05496 152 LVGATTRAGLLTSPLRD--RFGIVLRLEFYSVEELEEIVKRSARILGVEIDEE-GAAEIARRSRG-TPRIANRLLRRVRD 227 (234)
T ss_pred EEEECCCCCCCCHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 98521566647777997--6211244246899999999999999839995999-99999997799-89999899999999
Q ss_pred HH
Q ss_conf 45
Q gi|254780545|r 367 MA 368 (647)
Q Consensus 367 ~a 368 (647)
T Consensus 228 ~a 229 (234)
T pfam05496 228 FA 229 (234)
T ss_pred HH
T ss_conf 99