HHsearch alignment for GI: 254780545 and conserved domain: pfam06480
>pfam06480 FtsH_ext FtsH Extracellular. This domain is found in the FtsH family of proteins. FtsH is the only membrane-bound ATP-dependent protease universally conserved in prokaryotes. It only efficiently degrades proteins that have a low thermodynamic stability - e.g. it lacks robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni FtsH is involved in protection against environmental stress. and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded (personal obs: Yeats C). The precise function of this N-terminal region is unclear.
Probab=97.88 E-value=0.00034 Score=49.39 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=49.5
Q ss_pred CCCCCCCEEECHHHHHHHHHHCCEEEEEEECCEEE-------EEEECCCEEEEEE------ECCCCHHHHHHHHHCCCEE
Q ss_conf 77777740215899999997099159999889799-------9995798069998------2688279999999779828
Q gi|254780545|r 17 SAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHIT-------GFYVNGESSFQTY------MPLVGSKLLDKLQSKDIEI 83 (647)
Q Consensus 17 ~~~~~~~~eIsYSeFlk~Le~g~V~sV~I~~~~i~-------~~~~~g~~~~~t~------~p~~~~~l~~~L~e~~V~v 83 (647)
T Consensus 20 ~~~~~~~~~i~ys~f~~~l~~~~v~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 99 (104)
T pfam06480 20 LSSSSSTKEISYSEFLELLEAGKVKKVVIDDDEITKPTGDVAGKLKDGSKFTTYFIPTLPSVDSFLEKLEEALVEKGVKV 99 (104)
T ss_pred CCCCCCCCEECHHHHHHHHHCCCEEEEEEECCEEEECCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 99878750763999999997198659998688875021333314779994487789976656656689999999889879
Q ss_pred EEE
Q ss_conf 998
Q gi|254780545|r 84 SSR 86 (647)
Q Consensus 84 ~~~ 86 (647)
T Consensus 100 ~~~ 102 (104)
T pfam06480 100 SAK 102 (104)
T ss_pred EEE
T ss_conf 620