HHsearch alignment for GI: 254780545 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.57 E-value=0.14 Score=30.42 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=65.0
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH---------HHHHCCHHHHHHHHHHHHHHCCHHEEH-HHH
Q ss_conf 3331100378742588899997424699702058578864---------442033245999999998737801206-323
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---------LFVGVGASRVRDMFEQAKNNSPCIVFV-DEI 249 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~---------~~~g~g~~~vr~lf~~a~~~~p~iifi-Dei 249 (647)
T Consensus 16 ke~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~~Yy~~~~~iIfVVDss 95 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY 95 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 61479999658898899999980699753057878864899999999999988987778899998821675899997268
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 5641445578988626889889989985303235778299996298100
Q gi|254780545|r 250 DAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDV 298 (647)
Q Consensus 250 da~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~ 298 (647)
T Consensus 96 D---~~r-------~~eak~~L~~ll~~~~--l~~~PlLila--NKqDl 130 (184)
T smart00178 96 D---KER-------FAESKRELDALLSDEE--LATVPFLILG--NKIDA 130 (184)
T ss_pred C---HHH-------HHHHHHHHHHHHHHHH--HCCCCEEEEE--ECCCC
T ss_conf 6---889-------9999999999864676--5597099999--75677