HHsearch alignment for GI: 254780545 and conserved domain: smart00534
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.65 E-value=0.13 Score=30.61 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=55.2
Q ss_pred EEECCCCCHHHHHHHHHHHC--------------CCCCCEEC-----CCHHHHH----HHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 10037874258889999742--------------46997020-----5857886----4442033245999999998737
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAG--------------EANVPFFT-----ISGSDFV----ELFVGVGASRVRDMFEQAKNNS 240 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~--------------e~~~~f~~-----~~~s~~~----~~~~g~g~~~vr~lf~~a~~~~ 240 (647)
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G~~vpa~~~~~~~~d~i~~~i~~~d~~~~~~S~F~~-e~~~~~~il~~~--~~ 78 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMV-EMKETANILKNA--TE 78 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHC--CC
T ss_conf 899799988489999999999999997888615771995031002335641002156418999-999999999838--98
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 80120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l 299 (647)
T Consensus 79 ~sLvliDEl~-----~GT~----~~eg~ala~aile~l---~~~~~~~~iitTH~~eL~ 125 (185)
T smart00534 79 NSLVLLDELG-----RGTS----TYDGVAIAAAVLEYL---LEKIGALTLFATHYHELT 125 (185)
T ss_pred CEEEEECCCC-----CCCC----HHHHHHHHHHHHHHH---HHCCCCEEEEEECHHHHH
T ss_conf 7376304113-----6888----147899999999999---963697599860437899