HHsearch alignment for GI: 254780545 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.09 E-value=0.00068 Score=47.16 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=42.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECCCCCHHHHHHHHHHHCCCC-------CCEECCCH
Q ss_conf 698-8985288999999999874335676642012333110-037874258889999742469-------97020585
Q gi|254780545|r 146 TFK-DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL-LVGPPGTGKTLLARAVAGEAN-------VPFFTISG 214 (647)
Q Consensus 146 ~f~-dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~l-l~GppGtGKTlla~a~a~e~~-------~~f~~~~~ 214 (647)
T Consensus 48 ~F~d~~fG~e~~i---~~~V~~~k~----AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w 118 (361)
T smart00763 48 FFDHDFFGMEEAI---ERFVNYFKS----AAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CHHHHHCCCHHHH---HHHHHHHHH----HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 1101311648999---999999999----9844671256999988998877999999999999862677685599983