RPSBLAST alignment for GI: 254780545 and conserved domain: KOG0736

>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]. Length = 953

 Score =  193 bits (491), Expect = 2e-49
 Identities = 102/269 (37%), Positives = 158/269 (58%), Gaps = 16/269 (5%)

Query: 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRL---GGRIPHGVLLVGPPGTGKTLLA 198
           + +V++ DV G++E K ++ + +     P K   L   G R   G+LL GPPGTGKTLLA
Sbjct: 666 IPNVSWDDVGGLEEVKTEILDTIQL---PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722

Query: 199 RAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258
           +AVA E ++ F ++ G + + ++VG     VR++FE+A++ +PC++F DE+D++  +RG 
Sbjct: 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGR 782

Query: 259 -GLGGGNDEREQTLNQLLVEMDGF--ESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315
            G  GG  +R   ++QLL E+DG    SS+ V +I ATNRPD+LD ALLRPGRFD+ + V
Sbjct: 783 SGDSGGVMDR--VVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYV 840

Query: 316 -PNPDIVGREHILMVHSRNVPLAPNVILKTIARGTP-GFSGADLRNLVNEAALMAARRNR 373
            PN D   +  +L   +R   L  +V L  IA+  P   +GADL +L ++A L A +R  
Sbjct: 841 GPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900

Query: 374 RLV---TMQEFEDAKDKILMGAERRSTAM 399
             +   T+ E E     + +  E    + 
Sbjct: 901 HDIESGTISEEEQESSSVRVTMEDFLKSA 929