RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus
Liberibacter asiaticus str. psy62]
(647 letters)
>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 714 bits (1844), Expect = 0.0
Identities = 338/600 (56%), Positives = 429/600 (71%), Gaps = 13/600 (2%)
Query: 2 IALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHIT-GFYVNGESS 60
IA+ LI F++F + ++YSQFI+ V G+V +S+ G T + S
Sbjct: 6 IAIVLIFLFNLFT-----NSSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK 60
Query: 61 FQTYMPL--VGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVV-LVWMFLMR 117
Y+P L+ L S +I S D + L S L +W P +L++ L W F R
Sbjct: 61 NTVYLPKGVNDPNLVSFLDSNNITESGFIPED-NSLLASLLSTWLPFILLIGLGWFFFRR 119
Query: 118 QIQGGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLG 177
Q QGGG GA FGKSKAKL + VTF DVAGVDEAKE+L E+VDFL +P+K++ LG
Sbjct: 120 QAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALG 179
Query: 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK 237
+IP GVLLVGPPGTGKTLLA+AVAGEA VPFF+ISGSDFVE+FVGVGASRVRD+FEQAK
Sbjct: 180 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK 239
Query: 238 NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297
N+PCI+F+DEIDAVGR RG GLGGGNDEREQTLNQLLVEMDGF +EGVI+IAATNRPD
Sbjct: 240 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPD 299
Query: 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADL 357
VLD ALLRPGRFDRQI V PDI GRE IL VH++N PLA +V LK IARGTPGFSGADL
Sbjct: 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADL 359
Query: 358 RNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVV 417
NL+NEAAL+AARRN++ +TM++ E+A D+++ G ER+S ++E EKKITAYHEAGHA+V
Sbjct: 360 ANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALV 419
Query: 418 ACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFG 477
+P ADP+HK TIIPRGRALG + LPE D++ + + R+ +L+GGR AEE FG
Sbjct: 420 GLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFG 479
Query: 478 EDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEET 537
+T+GA +D+E AT LAR MVT++G S LG V+YE+ + L + + ++ SEET
Sbjct: 480 Y-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQ--KAKNYSEET 536
Query: 538 AQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRP 597
AQ+ID+EV +I+EAY++AK ++ E D +AE LLE ET+ +EI ++ G K+
Sbjct: 537 AQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLPSE 596
>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 752
Score = 582 bits (1501), Expect = e-166
Identities = 276/593 (46%), Positives = 356/593 (60%), Gaps = 24/593 (4%)
Query: 9 SFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRK--ISVIGTHITGFYVNGESSFQTYMP 66
F I G ++ A R+ + + + V S +
Sbjct: 160 PFYIQALQRRGFKTLKSREGVGRRTRSTAERLNESLANSPSSLKGDLQVGAPSLVELLDK 219
Query: 67 LVGSKLLDKLQSKDI-EISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ---GG 122
L G+K + + L +V + + + + G
Sbjct: 220 LEGTKNIPESHKDPFHVGFVEGFLSNRTTKAGRLVKTIRTTIVGYLLLLGIYALLENTGL 279
Query: 123 GARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPH 182
G +VTF+DV GVDEAK++L+EIV+FL DP KF RLGG++P
Sbjct: 280 SGIFRSTTGLDSEVDPEQMK-NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK 338
Query: 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPC 242
GVLLVGPPGTGKTLLARAVAGEA VPFF SGS+F E+FVGVGA RVRD+F AK +PC
Sbjct: 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPC 398
Query: 243 IVFVDEIDAVGRHRGIGLGGGNDER--EQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300
I+F+DEIDAVG R +D+ +QTLNQLLVEMDGF+ +EG+I+I ATN P+ LD
Sbjct: 399 IIFIDEIDAVGGKRN-----PSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453
Query: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360
AL RPGRFDR +TVP PD+ GR IL ++ +PL +V K IARGTPGFSGADL NL
Sbjct: 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANL 513
Query: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420
VN+AAL AA +VTM+ E AKD+ILMG ER+S + EE KKITAYHE GHA+VA +
Sbjct: 514 VNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALY 573
Query: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480
A PLHKATI+PRG +LG QLPE DR+S T + +RL + MGGRVAEE FG D
Sbjct: 574 TKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDK 633
Query: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540
+TSGA SD++ ATKLAR MVT+FG S+ +G V+ + S+S T +
Sbjct: 634 ITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSS----------SLSPRTQEL 683
Query: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEK 593
ID E+ RL+ ++Y++AKSI++ A+AEALLEYETL KEI +++G+
Sbjct: 684 IDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 580 bits (1496), Expect = e-166
Identities = 267/531 (50%), Positives = 361/531 (67%), Gaps = 11/531 (2%)
Query: 65 MPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSW-FPLVLVVLVWMFLMR--QIQG 121
+P+ S+L+ KL+ +I+ + P S +++ L + PL+L+ ++W F R +G
Sbjct: 98 LPVGASELIQKLKEANIDFDAHPPVLKSN-IVTILSNLLLPLILIGVLWFFFQRSSNFKG 156
Query: 122 GGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP 181
G + M FGKSKA+ +TF+D+AG++EAKE+ +E+V FL P++F +G +IP
Sbjct: 157 GPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIP 216
Query: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSP 241
GVLLVGPPGTGKTLLA+A+AGEA VPFF+ISGS+FVE+FVGVGA+RVRD+F++AK NSP
Sbjct: 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSP 276
Query: 242 CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDA 301
CIVF+DEIDAVGR RG G+GGGNDEREQTLNQLL EMDGF+ ++GVI+IAATNR D+LDA
Sbjct: 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336
Query: 302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361
ALLRPGRFDRQITV PD GR IL VH+RN L+P+V L+ IAR TPGFSGADL NL+
Sbjct: 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL 396
Query: 362 NEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHV 421
NEAA++ ARR + +TM+E + A D+++ G E + + K++ AYHE GHA+V +
Sbjct: 397 NEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDS-KNKRLIAYHEVGHAIVGTLL 455
Query: 422 PKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDNV 481
P DP+ K T+IPRG+A G+ PE D+ + + +R+ +GGR AEE FG V
Sbjct: 456 PNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEV 515
Query: 482 TSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKI 541
T+GA +D++ T LAR MVT+FG S++ + L + R SEE A KI
Sbjct: 516 TTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKI 575
Query: 542 DKEVFRLIEEAYQKAKSIIQEKNDNFVAI---AEALLEYETLSGKEIASLI 589
D EV ++ YQ A I++ DN V I E LL+ ET+ G E ++
Sbjct: 576 DMEVRSILHTCYQYAYQILK---DNRVLIDLLVELLLQKETIDGDEFREIV 623
>gnl|CDD|35950 KOG0731, KOG0731, KOG0731, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 774
Score = 530 bits (1365), Expect = e-151
Identities = 276/542 (50%), Positives = 360/542 (66%), Gaps = 21/542 (3%)
Query: 71 KLLDKLQSKDIEISSR-PVNDGSPGLL-SYLGSWFPLVLVVLVWMFLMRQIQG------G 122
KL + ++ I+ R PV S LL LG P +L++ ++L R+ +G G
Sbjct: 224 KLDEAQRNLGIDTVVRVPVTYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPG 283
Query: 123 GARGAMGFGKSKAKLLSGNVGS--VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180
G G FG SK+ N G+ V FKDVAGVDEAKE+L E V FL +P++++ LG +I
Sbjct: 284 GGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI 343
Query: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240
P GVLLVGPPGTGKTLLA+A+AGEA VPFF++SGS+FVE+FVGVGASRVRD+F A+ N+
Sbjct: 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNA 403
Query: 241 PCIVFVDEIDAVGRHR-GIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL 299
P I+F+DEIDAVGR R G G GGG DEREQTLNQLLVEMDGFE+S+GVI++AATNRPD+L
Sbjct: 404 PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463
Query: 300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPN-VILKTIARGTPGFSGADLR 358
D ALLRPGRFDRQI + PD+ GR IL VH R L V L +A TPGFSGADL
Sbjct: 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523
Query: 359 NLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVA 418
NL NEAAL+AAR+ R + ++ E A ++++ G E++S ++ EEKK AYHEAGHAVV
Sbjct: 524 NLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVG 583
Query: 419 CHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGE 478
+ ADPL K +IIP G+ALG Q D + + + R+ + +GGR AEE FG
Sbjct: 584 WLLEHADPLLKVSIIP-GQALG-YAQYLPTDDYLLSKEQLFDRMVMALGGRAAEEVVFG- 640
Query: 479 DNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETA 538
+T+GA D+E TK+AR MV FG S +G +S++ L S + SE+TA
Sbjct: 641 SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQML-----LPGDESFRKPYSEKTA 695
Query: 539 QKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPS 598
Q ID EV RL+++AY++ K +++ D IAE LLE E L+G+EI +L+ GE+
Sbjct: 696 QLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALL-GERPPGMP 754
Query: 599 ED 600
E
Sbjct: 755 EK 756
>gnl|CDD|31415 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 286 bits (733), Expect = 1e-77
Identities = 118/258 (45%), Positives = 174/258 (67%), Gaps = 1/258 (0%)
Query: 141 NVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLAR 199
VT++D+ G+DE ++++E+V+ L +P+ F+ LG P GVLL GPPGTGKTLLA+
Sbjct: 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAK 203
Query: 200 AVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG 259
AVA + + F + GS+ V+ ++G GA VR++FE A+ +P I+F+DEIDA+G R
Sbjct: 204 AVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS 263
Query: 260 LGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD 319
G+ E ++T+ +LL ++DGF+ V +I ATNRPD+LD ALLRPGRFDR+I P PD
Sbjct: 264 GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPD 323
Query: 320 IVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQ 379
GR IL +H+R + LA +V L+ +AR T GFSGADL+ + EA + A R R VTM+
Sbjct: 324 EEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTME 383
Query: 380 EFEDAKDKILMGAERRST 397
+F A +K++ ++ S+
Sbjct: 384 DFLKAVEKVVKKKKKLSS 401
>gnl|CDD|144872 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 192
Score = 250 bits (640), Expect = 1e-66
Identities = 98/190 (51%), Positives = 129/190 (67%)
Query: 399 MTEEEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWM 458
++EEEK++ AYHEAGHA+V +P ADP+HK TIIPRG+ALG LPE D+ T +
Sbjct: 3 ISEEEKRLVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKSQL 62
Query: 459 TSRLTILMGGRVAEEFTFGEDNVTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQ 518
+R+ + +GGR AEE FG+D VT+GA +D+E ATK+AR MVT+FG S+ LG VS E+
Sbjct: 63 LARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIARQMVTEFGMSDKLGPVSLEDSD 122
Query: 519 QEALLSHPVSRPRSISEETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYE 578
L + + SEETA ID+EV RL+EEAY++AK I+ E D A+AEALLE E
Sbjct: 123 GGVFLGRGMGSRKEYSEETADIIDEEVRRLLEEAYERAKEILTENRDELDALAEALLEKE 182
Query: 579 TLSGKEIASL 588
TL +E L
Sbjct: 183 TLDAEEFREL 192
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 239 bits (612), Expect = 1e-63
Identities = 113/263 (42%), Positives = 166/263 (63%), Gaps = 11/263 (4%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
V++ D+ G++E K +LQ+ V++ L P+KF R G P GVLL GPPG GKTLLA+A+A
Sbjct: 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN 490
Query: 204 EANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263
EA + F ++ G + +VG +R++F +A+ +PCI+F DEIDA+ RG G
Sbjct: 491 EAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG---GSS 547
Query: 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGR 323
+ ++ L+QLL EMDG E+ + V++IAATNRPD++D ALLRPGR DR I VP PD+ R
Sbjct: 548 SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607
Query: 324 EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN--RRLVTMQEF 381
IL ++ +P + +V L+ +A+ T G+SGA++ + EAAL+A R + +T Q F
Sbjct: 608 LEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHF 667
Query: 382 EDAKDKILMGAERRSTAMTEEEK 404
E+A + A R S EK
Sbjct: 668 EEA-----LKAVRPSLTSELLEK 685
Score = 167 bits (423), Expect = 1e-41
Identities = 101/248 (40%), Positives = 141/248 (56%), Gaps = 12/248 (4%)
Query: 149 DVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207
D+ G+ ++E+V+ L P FK +G + P G+LL GPPGTGKT L RAVA E
Sbjct: 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA 244
Query: 208 PFFTISGSDFVELFVGVGASRVRDMFEQA-KNNSPCIVFVDEIDAVGRHRGIGLGGGNDE 266
F I+G + + F G S +R F +A K P I+F+DE+DA+ R G +D
Sbjct: 245 FLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKR----EGADDV 300
Query: 267 REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHI 326
+ ++QLL +DG + VI++AATNRPD LD A LR GRFDR++ + P GR I
Sbjct: 301 ESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA-LRRGRFDREVEIGIPGSDGRLDI 359
Query: 327 LMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386
L V ++ + L +V L+ IA T G+ GADL L EA+L A RR T++ F++A
Sbjct: 360 LRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALM 414
Query: 387 KILMGAER 394
I A R
Sbjct: 415 GIRPSALR 422
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 232 bits (593), Expect = 2e-61
Identities = 122/248 (49%), Positives = 163/248 (65%), Gaps = 7/248 (2%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDFLCD-PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
VT D+ G++EAKE+L+E ++ P+ F++LG R P GVLL GPPGTGKTLLA+AVA
Sbjct: 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298
Query: 204 EANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263
E+ F ++ GS+ + +VG +R++FE+A+ +P I+F+DEID++ RG G
Sbjct: 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS 358
Query: 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGR 323
+ QLL E+DG E +EGV++IAATNRPD LD ALLRPGRFDR I VP PD+ R
Sbjct: 359 GRR---VVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415
Query: 324 EHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL-VTMQE 380
I +H R PLA +V L+ +A T G+SGAD+ LV EAAL A R RR VT+ +
Sbjct: 416 LEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDD 475
Query: 381 FEDAKDKI 388
F DA KI
Sbjct: 476 FLDALKKI 483
Score = 145 bits (367), Expect = 3e-35
Identities = 106/227 (46%), Positives = 137/227 (60%), Gaps = 11/227 (4%)
Query: 169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASR 228
+P+ FK+LG P GVLL GPPGTGKTLLARA+A E F +I+G + + +VG R
Sbjct: 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELR 64
Query: 229 VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVI 288
+R++FE+A+ +P I+F+DEIDA+ R G + + QLL MDG + + VI
Sbjct: 65 LRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGE---VERRVVAQLLALMDGLKRGQ-VI 120
Query: 289 LIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARG 348
+I ATNRPD LD A RPGRFDR+I V PD GR IL +H+R + L P KT+A
Sbjct: 121 VIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAAR 180
Query: 349 TPGFSGADLRNLVNEAALMAARRNR------RLVTMQEFEDAKDKIL 389
T G SGADL L EAAL RR VT +FE+A K+L
Sbjct: 181 TVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 222 bits (568), Expect = 2e-58
Identities = 107/289 (37%), Positives = 157/289 (54%), Gaps = 9/289 (3%)
Query: 126 GAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL 185
A G + + L +V+F D+ G+D+ +L E++ + P+ F LG R P GVL
Sbjct: 168 LARGILRQFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVL 227
Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVF 245
L GPPG GKT LA A+AGE VPF +IS + V G ++R++F+QAK+N+PCIVF
Sbjct: 228 LHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVF 287
Query: 246 VDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE----GVILIAATNRPDVLDA 301
+DEIDA+ R + + + QLL MD + + V++I ATNRPD LD
Sbjct: 288 IDEIDAITPKRE---EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344
Query: 302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361
AL R GRFDR+I + P RE IL + R + L+ + K +A+ TPGF GADL L
Sbjct: 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALC 404
Query: 362 NEAALMAARR--NRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408
EAA +A +R ++ + + ++D AE +++
Sbjct: 405 REAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERP 453
Score = 210 bits (536), Expect = 1e-54
Identities = 101/235 (42%), Positives = 143/235 (60%), Gaps = 8/235 (3%)
Query: 142 VGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARA 200
V VT+ D+ ++E + +L I+ + P FK LG P GVLL GPPG GKTLLA+A
Sbjct: 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKA 564
Query: 201 VAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL 260
VA EA F ++ G + + +VG VR +F++A+ ++PC++F DEIDA+ R
Sbjct: 565 VANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624
Query: 261 GGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDI 320
+ + +NQLL E+DG E GV +IAATNRPD++D A+LRPGR D+ + V P+
Sbjct: 625 SSVSS---RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681
Query: 321 VGREHILMVHSRN--VPLAPNVILKTIARGT--PGFSGADLRNLVNEAALMAARR 371
R IL ++N PL+ +V L IAR T GF+GADL LV EA+++A R
Sbjct: 682 EERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRE 736
>gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex,
ATPase RPT1 [Posttranslational modification, protein
turnover, chaperones].
Length = 435
Score = 222 bits (567), Expect = 2e-58
Identities = 107/254 (42%), Positives = 163/254 (64%), Gaps = 1/254 (0%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
VT+ DV G E E L+E+V+ L P++F LG P GVLL GPPGTGKTL ARAVA
Sbjct: 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233
Query: 204 EANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263
+ F + GS+ V+ +VG GA VR++FE A+ CI+F DEIDA+G R GG
Sbjct: 234 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGG 293
Query: 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGR 323
++E ++T+ +L+ ++DGF+ + ++ ATNRPD LD ALLRPGR DR++ PD+ GR
Sbjct: 294 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGR 353
Query: 324 EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383
HI +H++++ + ++ + +AR P +GA++R++ EA + A R R++ T ++F D
Sbjct: 354 THIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLD 413
Query: 384 AKDKILMGAERRST 397
A +K++ G + S
Sbjct: 414 AVNKVVKGYAKFSA 427
>gnl|CDD|35947 KOG0728, KOG0728, KOG0728, 26S proteasome regulatory complex,
ATPase RPT6 [Posttranslational modification, protein
turnover, chaperones].
Length = 404
Score = 217 bits (555), Expect = 6e-57
Identities = 104/246 (42%), Positives = 163/246 (66%), Gaps = 1/246 (0%)
Query: 146 TFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
T++ + G+D+ ++++E+++ + P+ F+ LG P GVLL GPPGTGKTLLARAVA
Sbjct: 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204
Query: 205 ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264
+ F +SGS+ V+ ++G G+ VR++F A+ ++P I+F+DEID++G R GG+
Sbjct: 205 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGD 264
Query: 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGRE 324
E ++T+ +LL ++DGFE+++ + +I ATNR D+LD ALLRPGR DR+I P P+ R
Sbjct: 265 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 324
Query: 325 HILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDA 384
IL +HSR + L + L+ IA PG SGA+++ + EA + A R R VT ++FE A
Sbjct: 325 DILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 384
Query: 385 KDKILM 390
K++
Sbjct: 385 VAKVMQ 390
>gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex,
ATPase RPT5 [Posttranslational modification, protein
turnover, chaperones].
Length = 424
Score = 214 bits (545), Expect = 7e-56
Identities = 103/240 (42%), Positives = 153/240 (63%), Gaps = 1/240 (0%)
Query: 146 TFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
+ D+ G+D+ ++L E IV + +KF+ LG R P GVL+ GPPGTGKTL+ARA A +
Sbjct: 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228
Query: 205 ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264
N F ++G V++F+G GA VRD F AK +P I+F+DE+DA+G R G+
Sbjct: 229 TNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGD 288
Query: 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGRE 324
E ++T+ +LL ++DGF S + V +IAATNR D+LD ALLR GR DR+I P+P+ R
Sbjct: 289 REVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARA 348
Query: 325 HILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDA 384
IL +HSR + ++ +V + +AR T F+GA + + EA ++A RR VT ++F +
Sbjct: 349 RILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEG 408
>gnl|CDD|35945 KOG0726, KOG0726, KOG0726, 26S proteasome regulatory complex,
ATPase RPT2 [Posttranslational modification, protein
turnover, chaperones].
Length = 440
Score = 207 bits (528), Expect = 8e-54
Identities = 99/245 (40%), Positives = 158/245 (64%), Gaps = 1/245 (0%)
Query: 146 TFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
T+ D+ G++ ++++E V+ L P+ ++ +G + P GV+L G PGTGKTLLA+AVA +
Sbjct: 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242
Query: 205 ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264
+ F + GS+ ++ ++G G VR++F A+ ++P IVF+DEIDA+G R GG
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGRE 324
E ++T+ +LL ++DGF+S V +I ATNR + LD AL+RPGR DR+I P PD ++
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 325 HILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDA 384
I +H+ + LA +V L+ + SGAD++ + EA L+A R R VTM++F+ A
Sbjct: 363 KIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKA 422
Query: 385 KDKIL 389
K+K+L
Sbjct: 423 KEKVL 427
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 193 bits (492), Expect = 1e-49
Identities = 94/224 (41%), Positives = 141/224 (62%), Gaps = 4/224 (1%)
Query: 149 DVAGVDEAKEDLQEIVDFLCD-PQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207
D+ G+ EAK+ L+E++++ PQ F R+ G+LL GPPG GKTLLA A+A +N+
Sbjct: 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL 727
Query: 208 PFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDER 267
F ++ G + + ++G VRD+FE+A++ PCI+F DE D++ RG G D
Sbjct: 728 RFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD-- 785
Query: 268 EQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHIL 327
+ +NQLL E+DG E +GV ++AAT+RPD++D ALLRPGR D+ + P PD R IL
Sbjct: 786 -RVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844
Query: 328 MVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371
V S ++ +V L+ +A+ T GF+GADL++L+ A L A
Sbjct: 845 QVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888
Score = 65.8 bits (160), Expect = 4e-11
Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 27/257 (10%)
Query: 151 AGVDEAKEDL---QEIVDFLCDP-------QKFKRLGGRIPHGVLLVGPPGTGKTLLARA 200
AG+ E DL DF+ P + R + +LL GP G+GKT L +A
Sbjct: 392 AGIKENSPDLVMSPFEHDFIQVPSYKKENANQELSPVFRHGN-ILLNGPKGSGKTNLVKA 450
Query: 201 VAGEANVP----FFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDA---VG 253
+ + +S S + + ++F +A +P I+ +D++D
Sbjct: 451 LFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510
Query: 254 RHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQI 313
+ G ++ LNQ++ + +IA L+ L+ P F I
Sbjct: 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRK--IAVIATGQELQTLNPLLVSPLLFQIVI 568
Query: 314 TVPNPDIVGREHILM-VHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRN 372
+P P + R+ IL + S+N+ L ++ T G+ DL V E A+ A
Sbjct: 569 ALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV-ERAIHEAFLE 627
Query: 373 R-----RLVTMQEFEDA 384
R +L+T + FE +
Sbjct: 628 RISNGPKLLTKELFEKS 644
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 193 bits (491), Expect = 2e-49
Identities = 102/269 (37%), Positives = 158/269 (58%), Gaps = 16/269 (5%)
Query: 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRL---GGRIPHGVLLVGPPGTGKTLLA 198
+ +V++ DV G++E K ++ + + P K L G R G+LL GPPGTGKTLLA
Sbjct: 666 IPNVSWDDVGGLEEVKTEILDTIQL---PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722
Query: 199 RAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258
+AVA E ++ F ++ G + + ++VG VR++FE+A++ +PC++F DE+D++ +RG
Sbjct: 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGR 782
Query: 259 -GLGGGNDEREQTLNQLLVEMDGF--ESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315
G GG +R ++QLL E+DG SS+ V +I ATNRPD+LD ALLRPGRFD+ + V
Sbjct: 783 SGDSGGVMDR--VVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYV 840
Query: 316 -PNPDIVGREHILMVHSRNVPLAPNVILKTIARGTP-GFSGADLRNLVNEAALMAARRNR 373
PN D + +L +R L +V L IA+ P +GADL +L ++A L A +R
Sbjct: 841 GPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900
Query: 374 RLV---TMQEFEDAKDKILMGAERRSTAM 399
+ T+ E E + + E +
Sbjct: 901 HDIESGTISEEEQESSSVRVTMEDFLKSA 929
Score = 87.0 bits (215), Expect = 1e-17
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 7/213 (3%)
Query: 160 LQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE 219
+ E+V L ++ + VLL GPPG+GKT + RAVA E + + + V
Sbjct: 410 VLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVA 469
Query: 220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDER-EQTLNQLLVEM 278
++++ +F +A+ SP ++F+ +D +G + GG D R + + LL
Sbjct: 470 ESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ----DGGEDARLLKVIRHLLSNE 525
Query: 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAP 338
D S VI++A T+ + L A + +I VP R IL + ++PL
Sbjct: 526 DFKFSCPPVIVVATTSSIEDLPADIQSLFLH--EIEVPALSEEQRLEILQWYLNHLPLNQ 583
Query: 339 NVILKTIARGTPGFSGADLRNLVNEAALMAARR 371
+V LK +AR T GFS DL LV ++L A R
Sbjct: 584 DVNLKQLARKTSGFSFGDLEALVAHSSLAAKTR 616
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 192 bits (490), Expect = 2e-49
Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 1/242 (0%)
Query: 144 SVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA 202
V++ D+ G+D K++++E V+ L +K++G P GVLL GPPGTGKT+LA+AVA
Sbjct: 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 210
Query: 203 GEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG 262
F + GS+FV+ ++G G VRD+F AK N+P I+F+DEIDA+ R G
Sbjct: 211 NHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG 270
Query: 263 GNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVG 322
+ E ++ L +LL +MDGF+ + V +I ATNR D LD ALLRPGR DR+I P PD
Sbjct: 271 ADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 330
Query: 323 REHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFE 382
+ + + + L+ V L+ + SGAD+ + EA ++A R NR +V ++FE
Sbjct: 331 KRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFE 390
Query: 383 DA 384
A
Sbjct: 391 KA 392
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 183 bits (466), Expect = 2e-46
Identities = 77/134 (57%), Positives = 94/134 (70%), Gaps = 5/134 (3%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243
+LL GPPGTGKT LA+AVA E PF ISGS+ V +VG R+R++FE AK +PC+
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG-VILIAATNRPDVLDAA 302
+F+DEIDA+ RG GG+ E + +NQLL E+DGF SS VI+IAATNRPD LD A
Sbjct: 61 IFIDEIDALAGSRG---SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPA 117
Query: 303 LLRPGRFDRQITVP 316
LLR GRFDR I P
Sbjct: 118 LLR-GRFDRIIEFP 130
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 181 bits (460), Expect = 6e-46
Identities = 105/292 (35%), Positives = 162/292 (55%), Gaps = 39/292 (13%)
Query: 127 AMGFGKSKAKLLSGNVGS----VTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIP 181
++G+ + L ++ + + D+AG+ EAK+ L+E V + P+ FK G R P
Sbjct: 187 SLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRP 244
Query: 182 -HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240
GVL+VGPPGTGKTLLA+AVA E FF +S S + G VR +FE A+ +
Sbjct: 245 WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA 304
Query: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTL---NQLLVEMDG----FESSEGVILIAAT 293
P +F+DEID++ R GG+ E E + ++LLV+MDG E+S+ V+++AAT
Sbjct: 305 PSTIFIDEIDSLCSQR-----GGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359
Query: 294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFS 353
N P +D AL R R +++I +P PD R ++ + R+V L V L+ +A + G+S
Sbjct: 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYS 417
Query: 354 GADLRNLVNEAALMAARRN-----------------RRLVTMQEFEDAKDKI 388
GAD+ N+ EA++MA RR + VT ++FE+A K+
Sbjct: 418 GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469
>gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex,
ATPase RPT4 [Posttranslational modification, protein
turnover, chaperones].
Length = 388
Score = 176 bits (448), Expect = 1e-44
Identities = 104/265 (39%), Positives = 156/265 (58%), Gaps = 4/265 (1%)
Query: 143 GSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAV 201
+++F++V G+ +L+E+++ L +P+ F R+G + P G+LL GPPGTGKTLLARAV
Sbjct: 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAV 186
Query: 202 AGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLG 261
A V F + S V+ ++G A +RDMF A+ PCI+F+DEIDA+G R
Sbjct: 187 AATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT 246
Query: 262 GGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIV 321
+ E ++TL +LL +MDGF++ V I ATNRPD LD ALLRPGR DR++ +P P+
Sbjct: 247 SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQ 306
Query: 322 GREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEF 381
R IL +H + + + + I + GF+GADLRN+ EA + A R V ++F
Sbjct: 307 ARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366
Query: 382 EDAKDKILMGAERRSTAMTEEEKKI 406
K A+ + ++ + KK
Sbjct: 367 MKLVRKQ---ADAKKLELSLDYKKA 388
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 176 bits (448), Expect = 2e-44
Identities = 93/250 (37%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAV 201
+ +T DV G +EAK + I+++L +P++F P VL GPPGTGKT++A+A+
Sbjct: 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKAL 171
Query: 202 AGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI-GL 260
A EA VP + ++ + VG GA R+ +++E+A+ +PCIVF+DE+DA+ R L
Sbjct: 172 ANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231
Query: 261 GGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDI 320
G E +N LL E+DG + +EGV+ IAATNRP++LD A+ RF+ +I P+
Sbjct: 232 RGDVSE---IVNALLTELDGIKENEGVVTIAATNRPELLDPAI--RSRFEEEIEFKLPND 286
Query: 321 VGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAA-RRNRRLVTMQ 379
R IL +++ PL + L+ +A T G SG D++ V + AL A +R V +
Sbjct: 287 EERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346
Query: 380 EFEDAKDKIL 389
+ E A K
Sbjct: 347 DIEKALKKER 356
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 165 bits (418), Expect = 5e-41
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 13/233 (5%)
Query: 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRL--GGRIP-HGVLLVGPPGTGKTLLARA 200
+V + DVAG++ AKE L+E V P KF +L G R P G+LL GPPGTGK+ LA+A
Sbjct: 129 NVKWSDVAGLEGAKEALKEAVIL---PIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKA 185
Query: 201 VAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL 260
VA EAN FF++S SD V ++G V+++FE A+ N P I+F+DEID++ R
Sbjct: 186 VATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS--- 242
Query: 261 GGGNDEREQTLNQLLVEMDGF-ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPD 319
++ + + LV+M G ++GV+++ ATN P VLD+A+ R RF+++I +P P+
Sbjct: 243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 300
Query: 320 IVGREHILMVHSRNVP-LAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371
R + +H + P + K +AR T G+SG+D+ +V +A + R+
Sbjct: 301 AHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353
>gnl|CDD|35951 KOG0732, KOG0732, KOG0732, AAA+-type ATPase containing the
bromodomain [Posttranslational modification, protein
turnover, chaperones].
Length = 1080
Score = 163 bits (413), Expect = 2e-40
Identities = 97/239 (40%), Positives = 132/239 (55%), Gaps = 18/239 (7%)
Query: 144 SVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA 202
SV F V G++ L+E+V L P+ F P GVL GPPGTGKTL+ARA+A
Sbjct: 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALA 320
Query: 203 -----GEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG 257
G + FF G+D + +VG ++R +FE+A+ P I+F DEID + R
Sbjct: 321 AACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVR- 379
Query: 258 IGLGGGNDEREQTLNQ----LLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQI 313
+ ++EQ LL MDG +S V++I ATNRPD +D AL RPGRFDR+
Sbjct: 380 ------SSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREF 433
Query: 314 TVPNPDIVGREHILMVHSRNVPLAPN-VILKTIARGTPGFSGADLRNLVNEAALMAARR 371
P PD+ R IL +H+R + +L +A T G+ GADL+ L EAAL+A RR
Sbjct: 434 YFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRR 492
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 161 bits (408), Expect = 7e-40
Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 43/304 (14%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLG-GRIPHGVLLVGPPGTGKTLLARAVA 202
V+F D+ G++E K+ LQE+V L P+ F + R P G+LL GPPGTGKT+LA+A+A
Sbjct: 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIA 148
Query: 203 GEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG 262
EA F +S S+ + G V+ +F A P I+F+DE+D+ R
Sbjct: 149 KEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST--- 205
Query: 263 GNDEREQTL---NQLLVEMDGFESSEG--VILIAATNRPDVLDAALLRPGRFDRQITVPN 317
+ E T N+ + DG S + V+++ ATNRP LD A++R R R+ V
Sbjct: 206 ---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGL 260
Query: 318 PDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR------ 371
PD R IL V + L +V L IA+ T G+SG+DL+ L AAL R
Sbjct: 261 PDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSET 320
Query: 372 ----------------------NRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAY 409
R + ++F A +++ +T M ++ Y
Sbjct: 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELY 380
Query: 410 HEAG 413
E G
Sbjct: 381 GEGG 384
>gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 744
Score = 145 bits (367), Expect = 3e-35
Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 21/241 (8%)
Query: 169 DPQKFKRLGGRIPH--GVLLVGPPGTGKTLLARAVAGEANV-PFFTISGSDFVELFVGVG 225
P+ ++LG I H G+LL GPPGTGKTL+AR + N ++G + + +VG
Sbjct: 244 PPEVIEQLG--IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301
Query: 226 ASRVRDMFEQAK--------NNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE 277
VR +F A+ N+ I+ DEIDA+ + RG + G + +NQLL +
Sbjct: 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRG-SMAGSTGVHDTVVNQLLSK 360
Query: 278 MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR----N 333
MDG E +++I TNR D++D ALLRPGR + Q+ + PD GR IL +H++ N
Sbjct: 361 MDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN 420
Query: 334 VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRL---VTMQEFEDAKDKILM 390
L+ +V LK +A T FSGA+L LV A A R+ + V + K+
Sbjct: 421 NKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTR 480
Query: 391 G 391
G
Sbjct: 481 G 481
Score = 43.4 bits (102), Expect = 2e-04
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI-SGSDFVELFVGVGASRVRDMFEQAKNNSPC 242
VLL GPPG+GKT LA +A ++ PF I S D + L + ++ +FE A +
Sbjct: 541 VLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS 600
Query: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG--VILIAATNRPDVLD 300
I+ VD+I+ + + IG N L LLV + + +G +++ T+R +VL
Sbjct: 601 IIVVDDIERLLDYVPIGPRFSN----LVLQALLVLLKK-QPPKGRKLLIFGTTSRREVLQ 655
Query: 301 AALLRPGRFDRQITVPN 317
+ F I VPN
Sbjct: 656 EMGILDC-FSSTIHVPN 671
>gnl|CDD|35959 KOG0740, KOG0740, KOG0740, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 428
Score = 132 bits (333), Expect = 3e-31
Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 15/253 (5%)
Query: 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCD-PQKFKRLGGRIPHGVLLVGPPGTGKTLLAR 199
+ +V + D+AG+++AK+ L+E V P F L G+LL GPPGTGKT+LA+
Sbjct: 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAK 204
Query: 200 AVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIG 259
A+A E+ FF IS S +VG VR +F+ A++ P ++F+DEID++ R
Sbjct: 205 AIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS-- 262
Query: 260 LGGGNDEREQTLNQLLVEMDGFESS--EGVILIAATNRPDVLDAALLRPGRFDRQITVPN 317
++ + + L++ DG S+ + V++I ATNRP LD A R RF +++ +P
Sbjct: 263 -DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPL 319
Query: 318 PDIVGREHI---LMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRR 374
PD R + L+ N ++ +A+ T G+SG+D+ L EAA M R
Sbjct: 320 PDYETRSLLWKQLLKEQPNGLSDLDI--SLLAKVTEGYSGSDITALCKEAA-MGPLRELG 376
Query: 375 LVTMQEFEDAKDK 387
T EF DA
Sbjct: 377 GTTDLEFIDADKI 389
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 108 bits (271), Expect = 5e-24
Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 151 AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NV 207
G +EA E L+E ++ P +LL GPPGTGKT LARA+A E
Sbjct: 1 VGQEEAIEALREALE------------LPPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48
Query: 208 PFFTISGSDFVELFVG---VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264
PF ++ SD +E V G VR +FE A+ P ++F+DEID++ R
Sbjct: 49 PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR---------- 98
Query: 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316
+ L L D E V +I ATNRP + D R D +I +P
Sbjct: 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 98.9 bits (247), Expect = 4e-21
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 24/244 (9%)
Query: 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
+ D+ G+D K+ L++ ++ G P G+LLVG GTGK+L A+A+A
Sbjct: 224 NEKISDIGGLDNLKDWLKKRST--SFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281
Query: 204 EANVPFFTISGSDFVELF---VGVGASRVRDMFEQAKNNSPCIVFVDEID-AVGRHRGIG 259
+ +P + D +LF VG SR+R M A+ SPCI+++DEID A G
Sbjct: 282 DWQLPLLRL---DVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG 338
Query: 260 LGGGNDEREQTLNQLLVEMDGF--ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPN 317
G T N++L + E V ++A N D+L +LR GRFD +
Sbjct: 339 DSG-------TTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL 391
Query: 318 PDIVGREHILMVHSRNVPLAPNVI----LKTIARGTPGFSGADLRNLVNEAALMAARRNR 373
P + RE I +H + P +K +++ + FSGA++ + EA +A R
Sbjct: 392 PSLEEREKIFKIHLQKF--RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR 449
Query: 374 RLVT 377
T
Sbjct: 450 EFTT 453
>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 457
Score = 83.4 bits (206), Expect = 2e-16
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 146 TFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
TF+ +A + KE + + + DF+ +KR+G G LL GPPGTGK+ A+A
Sbjct: 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANY 258
Query: 205 ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDA--VGRHRGIGLGG 262
N + + EL S +R + N S I+ +++ID R R
Sbjct: 259 LNYDIYDL------ELTEVKLDSDLRHLLLATPNKS--ILLIEDIDCSFDLRERRKKKKE 310
Query: 263 GNDEREQ--TLNQLLVEMDGFESSEGV--ILIAATNRPDVLDAALLRPGRFDRQITVPN 317
+ TL+ LL +DG SS G I++ TN + LD ALLRPGR D I +
Sbjct: 311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 72.4 bits (177), Expect = 4e-13
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 35/206 (16%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA-KNNSPC 242
+L GPPGTGKT+ AR +A + + + ++G D L +++ +F+ A K+
Sbjct: 387 ILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG-AQAVTKIHKLFDWAKKSRRGL 445
Query: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA 302
++F+DE DA R ++ + LN LL + S ++L+ ATNRP LD+A
Sbjct: 446 LLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501
Query: 303 LLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNV---------------------- 340
+ R D + P P R +L ++ L P
Sbjct: 502 V--NDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAG 559
Query: 341 -----ILKTIARGTPGFSGADLRNLV 361
A+ T GFSG ++ LV
Sbjct: 560 FDTGRKCSEAAKKTEGFSGREIAKLV 585
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 63.2 bits (153), Expect = 2e-10
Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 30/287 (10%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL--FVGVGASRVRDMFEQAKN--- 238
VLL GPPG GKTLLARA+A +PF I + + +G A +
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105
Query: 239 -----NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293
I+ +DEI+ L +ER+ T+ + I+IA
Sbjct: 106 GPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP----GLTTIRLPPPFIVIATQ 161
Query: 294 NRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-------LAPNVI 341
N + L ALL RF +I V PD E I++ V + P +
Sbjct: 162 NPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLS 219
Query: 342 LKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTE 401
+ + R + + V + + R + A + + A+
Sbjct: 220 DEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVA--LGASPRASLALLAALRALAL 277
Query: 402 EEKKITAYHEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEA 448
+ + + A+ + L + L +V ++ E
Sbjct: 278 LDGRDAVIPDDVKALAEPALAHRLILELEAKLSGLSVLDIVREILER 324
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 59.9 bits (145), Expect = 2e-09
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Query: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQA 236
G + ++L GPPGTGKT LAR +AG N F +S G +R++ E+A
Sbjct: 45 AGHLHS-MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEA 96
Query: 237 KNNSPC----IVFVDEIDAVGRHR 256
+ N I+F+DEI HR
Sbjct: 97 RKNRLLGRRTILFLDEI-----HR 115
>gnl|CDD|35963 KOG0744, KOG0744, KOG0744, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 423
Score = 53.8 bits (129), Expect = 1e-07
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 37/171 (21%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANV---------------------PFFTISGSDFVELFV 222
+LL GPPGTGKT L +A+A + ++ +F+ SG ++F
Sbjct: 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMF- 238
Query: 223 GVGASRVRDMFEQAKNNSPCIVFV--DEIDAVGRHRGIGLGGGNDERE--QTLNQLLVEM 278
+++++ E +VFV DE++++ R N+ + + +N LL ++
Sbjct: 239 ----QKIQELVEDRG----NLVFVLIDEVESLAAART-SASSRNEPSDAIRVVNALLTQL 289
Query: 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMV 329
D + V+++A +N D +D A + R D V P IL
Sbjct: 290 DRLKRYPNVLILATSNLTDSIDVAFV--DRADIVFYVGPPTAEAIYEILKS 338
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 53.6 bits (129), Expect = 2e-07
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 132 KSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPG 191
+SK KL + KD G+++ KE I+++L + K+L G I + LVGPPG
Sbjct: 307 RSKDKLDLKKAEKILDKDHYGLEKVKE---RILEYLAVQKLTKKLKGPI---LCLVGPPG 360
Query: 192 TGKTLLARAVAGEANVPFFTIS-G--SDFVEL------FVGVGASRVRDMFEQAKNNSPC 242
GKT L +++A F IS G D E+ ++G ++ ++A +P
Sbjct: 361 VGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPV 420
Query: 243 IVFVDEIDAVGR-HRG 257
+ +DEID +G RG
Sbjct: 421 FL-LDEIDKMGSSFRG 435
>gnl|CDD|31417 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 51.4 bits (123), Expect = 7e-07
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 152 GVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE--ANVPF 209
G +EA+E IV + K ++ GR G+L+VGPPGTGKT LA +A E +VPF
Sbjct: 43 GQEEAREAAGVIVKMI----KQGKMAGR---GILIVGPPGTGKTALAMGIARELGEDVPF 95
Query: 210 FTISGSDF 217
ISGS+
Sbjct: 96 VAISGSEI 103
>gnl|CDD|37153 KOG1942, KOG1942, KOG1942, DNA helicase, TBP-interacting protein
[Replication, recombination and repair].
Length = 456
Score = 48.4 bits (115), Expect = 6e-06
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE--ANV 207
G + A+E IVD + K K++ GR VLL GPPGTGKT LA A++ E V
Sbjct: 40 FVGQENAREAAGIIVDLI----KSKKMAGR---AVLLAGPPGTGKTALALAISQELGPKV 92
Query: 208 PFFTISGSD 216
PF + GS+
Sbjct: 93 PFCPMVGSE 101
>gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 48.0 bits (114), Expect = 8e-06
Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 68/248 (27%)
Query: 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFT--------------------ISG 214
RL G+L++G GTG++ L + +A + VPF T I
Sbjct: 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDD 1683
Query: 215 SDFVE-----------------------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDA 251
SD ++ + + + FE AK SPCI+++ I
Sbjct: 1684 SDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHD 1743
Query: 252 VGRHRGIGLGGGNDEREQTLNQLL--VEMDGFESSEGVIL-IAATNRPDVLDAALLRPGR 308
+ N+ +L L+ + D S IL IA+T+ P +D AL+ P +
Sbjct: 1744 LNV---------NESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNK 1794
Query: 309 FDRQITVPNPDIVGREHILMVHSR--------NVPLAPNVILKTIARGTPGFSGADLRNL 360
+ I + I + S + T G + DL L
Sbjct: 1795 LNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFH-----TNGFGSITMGSNARDLVAL 1849
Query: 361 VNEAALMA 368
NEA ++
Sbjct: 1850 TNEALSIS 1857
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 47.8 bits (114), Expect = 8e-06
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 27/115 (23%)
Query: 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA 205
T + G ++ KE LQ + + K+ G + H VLL GPPG GKT LA +A E
Sbjct: 24 TLDEFIGQEKVKEQLQIFI------KAAKKRGEALDH-VLLFGPPGLGKTTLAHIIANEL 76
Query: 206 NVPFFTISG------SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254
V SG D + + V +F+DEI +
Sbjct: 77 GVNLKITSGPALEKPGDLAAILTNLEEGDV--------------LFIDEIHRLSP 117
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 47.2 bits (112), Expect = 1e-05
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 155 EAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTIS 213
ED++E I++F+ + + G+I + VGPPG GKT +A+++A N FF S
Sbjct: 414 YGMEDVKERILEFIAVGKLRGSVQGKI---LCFVGPPGVGKTSIAKSIARALNRKFFRFS 470
Query: 214 ---GSDFVEL------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR-HRG 257
+D E+ +VG ++ ++ K +P ++ +DE+D +G H+G
Sbjct: 471 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG 523
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 46.2 bits (109), Expect = 2e-05
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQA 236
RIP ++L GPPGTGKT LAR +A + + FVEL + VRD+FEQA
Sbjct: 160 NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYR-----FVELSATNAKTNDVRDIFEQA 213
Query: 237 KN-----NSPCIVFVDEI 249
+N I+F+DEI
Sbjct: 214 QNEKSLTKRKTILFIDEI 231
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 45.2 bits (107), Expect = 5e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQA-----K 237
+LL+GP G+GKTLLA+ +A NVPF + E +VG + QA +
Sbjct: 100 ILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 159
Query: 238 NNSPCIVFVDEIDAVGR 254
I+++DEID + R
Sbjct: 160 RAERGIIYIDEIDKIAR 176
>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 43.7 bits (103), Expect = 2e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGA-SRVRDMFEQAK 237
P +L++GP G GKT +AR +A A PF + + F E+ +VG S +RD+ E A
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAV 108
Query: 238 N 238
Sbjct: 109 K 109
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 42.5 bits (101), Expect = 4e-04
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 14/57 (24%)
Query: 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
DV G ++AK L EI GG H +L++GPPG+GKT+LA+ + G
Sbjct: 2 LADVKGQEQAKRAL-EIA----------AAGG---HNLLMIGPPGSGKTMLAKRLPG 44
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 42.2 bits (99), Expect = 4e-04
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 176 LGGRIPHGVLLVGPPGTGKTLLARAVA---GEANVPFFTISGSDFVELFVG--VGASRVR 230
L R + +LVG PG GKT + +A +VP ++ L +G V ++ R
Sbjct: 186 LSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVP-ESLKDKRIYSLDLGSLVAGAKYR 244
Query: 231 DMFE--------QAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282
FE + + + I+F+DEI H +G G N L +
Sbjct: 245 GEFEERLKAVLKEVEKSKNVILFIDEI-----HTIVGAGATEGGAMDAANLLKPAL---- 295
Query: 283 SSEGVILIAATN----RPDVL-DAALLRPGRFDRQITVPNPDIVGREHILM 328
+ + I AT R + DAAL R RF +++ V P + IL
Sbjct: 296 ARGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILR 343
Score = 39.1 bits (91), Expect = 0.003
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 185 LLVGPPGTGKTLLARAVA---GEANVPFFTISGSDFVE-----LFVG-----VGASRVRD 231
L +GP G GKT LA+A+A I S+++E +G VG
Sbjct: 525 LFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQ 584
Query: 232 MFEQAKNNSPCIVFVDEID 250
+ E + ++ +DEI+
Sbjct: 585 LTEAVRRKPYSVILLDEIE 603
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 41.9 bits (98), Expect = 5e-04
Identities = 56/261 (21%), Positives = 89/261 (34%), Gaps = 49/261 (18%)
Query: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE-----ANVPFFTI 212
E++ ++ FL L G P +++ GP GTGKT + V E ANV I
Sbjct: 24 EEINQLASFL-----APALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYI 78
Query: 213 SGSDFVELF---------------VGVGASRVRDMFEQA--KNNSPCIVFVDEIDAVGRH 255
+ + + G + + K IV +DE+DA+
Sbjct: 79 NCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138
Query: 256 RGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR-PGRFDRQIT 314
G + L LL E+ V +IA +N LD R
Sbjct: 139 DG-----------EVLYSLL--RAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEI 185
Query: 315 VPNPDIVGREHILMVHSRNVPLAPNVI----LKTIARGTPGFSGADLR---NLVNEAALM 367
V P + ++ + VI LK IA D R +++ A +
Sbjct: 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV-AAESGDARKAIDILRRAGEI 244
Query: 368 AARRNRRLVTMQEFEDAKDKI 388
A R R V+ +A+++I
Sbjct: 245 AEREGSRKVSEDHVREAQEEI 265
>gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 40.6 bits (95), Expect = 0.001
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 184 VLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVELFVGVGASRVRDMFEQAKN 238
+ + G G GKT L +A+ EA N ++ DF F V A R +M + +
Sbjct: 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF--VKALRDNEMEKFKEK 173
Query: 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQ----TLNQLLVEMDGFESSEGVILIAATN 294
S ++ +D+I + G + ++ T N LL + I++ +
Sbjct: 174 YSLDLLLIDDIQFL---------AGKERTQEEFFHTFNALL-------ENGKQIVLTSDR 217
Query: 295 RPDVLDAALLR-PGRFDR--QITVPNPDIVGREHILMVHSRNVPLA-PNVILKTIARGTP 350
P L+ R R + + + PD R IL + + + P+ +L+ +A+
Sbjct: 218 PPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD 277
Query: 351 GFSGADLRNLVNEAALMAARRNRRL 375
+ +L +N A R +
Sbjct: 278 R-NVRELEGALNRLDAFALFTKRAI 301
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the development
of this type of cancer.
Length = 203
Score = 40.0 bits (94), Expect = 0.002
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 184 VLLVGPPGTGKT-LLARAVAGE--ANVPFFTISGSDFVELFVGVGAS----------RVR 230
VLL+GP +GKT L + G+ + V + + F+ G G ++R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR 62
Query: 231 DMFEQAKNNSP-CIVFVDEIDAVGRHRGI 258
D + NS IVFV +D+ + +
Sbjct: 63 DKLLETLKNSAKGIVFV--VDSATFQKNL 89
>gnl|CDD|147593 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus.
The RuvB protein makes up part of the RuvABC revolvasome
which catalyses the resolution of Holliday junctions
that arise during genetic recombination and DNA repair.
Branch migration is catalysed by the RuvB protein that
is targeted to the Holliday junction by the structure
specific RuvA protein. This family contains the
N-terminal region of the protein.
Length = 234
Score = 40.1 bits (95), Expect = 0.002
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214
VLL GPPG GKT LA +A E V SG
Sbjct: 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG 83
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 40.0 bits (93), Expect = 0.002
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGA-SRVRDMFEQAKNN-- 239
VLL+GP G+GKTLLA+ +A +VPF + + +VG S ++ + ++A+ N
Sbjct: 229 VLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVE 288
Query: 240 --SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278
IVF+DE+D + + + + D + + Q L+++
Sbjct: 289 KAQQGIVFLDEVDKITK-KAESIHTSRDVSGEGVQQALLKL 328
>gnl|CDD|73174 COG0470, HolB, ATPase involved in DNA replication [DNA replication,
recombination, and repair].
Length = 325
Score = 39.9 bits (92), Expect = 0.002
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 178 GRIPHGVLLVGPPGTGKTLLARAVAGE 204
GR+PH +L GPPG GKT A A+A E
Sbjct: 21 GRLPHALLFYGPPGVGKTTAALALAKE 47
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 39.0 bits (91), Expect = 0.004
Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 43/159 (27%)
Query: 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGSDF--- 217
+ + I G + ++GP G+GK+ LAR + G ++
Sbjct: 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77
Query: 218 -------VELFVGV-------GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG 263
ELF G G R R +A +P I+ +DE ++
Sbjct: 78 VGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNS----------HL 127
Query: 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAA 302
+ E E+ LNQ + + + G I +RP+ L +A
Sbjct: 128 DVEGERALNQAIAAL----KAAGATRIVIAHRPETLASA 162
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 37.9 bits (88), Expect = 0.009
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243
++L+G G GKT + R +A +PF D EL + ++F +
Sbjct: 2 IVLIGMMGAGKTTVGRLLAKALGLPFV-----DLDELIEQRAGMSIPEIFAEEGEEGFRE 56
Query: 244 VFVDEIDAVGRHRG--IGLGGGNDEREQTLNQLL 275
+ + + + I GGG RE+ LL
Sbjct: 57 LEREVLLLLLTKENAVIATGGGAVLREENRRLLL 90
>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 37.6 bits (87), Expect = 0.011
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 29/132 (21%)
Query: 134 KAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTG 193
+++ L TF D+ G A + E+ + + VL++G GTG
Sbjct: 231 ESEGLLRLKAKYTFDDIIGESPAMLRVLELA----------KRIAKTDSTVLILGESGTG 280
Query: 194 KTLLARAV---AGEANVPFFTISGSDFVE-------------LFVGVGASRVRDMFEQAK 237
K L ARA+ + AN PF I+ + E F G +FE A
Sbjct: 281 KELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN 340
Query: 238 NNSPCIVFVDEI 249
+ +F+DEI
Sbjct: 341 GGT---LFLDEI 349
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 37.5 bits (87), Expect = 0.013
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 14/58 (24%)
Query: 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG 203
FKDV G ++AK L+ GG H +LLVGPPGTGKT+LA + G
Sbjct: 177 DFKDVKGQEQAKRALEIAA-----------AGG---HNLLLVGPPGTGKTMLASRLPG 220
>gnl|CDD|33094 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 37.2 bits (86), Expect = 0.015
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 184 VLLVGPPGTGKTLLARAV--AGEANVPFFTIS----GSDFVEL---------FVGVGASR 228
VLL G GTGK +LARA+ EA PF ++ +E F G
Sbjct: 339 VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKG 398
Query: 229 VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVI 288
+ EQA +F+DEI + L E + + G +
Sbjct: 399 YKGKLEQADGG---TLFLDEIGDMPLALQSRLLRVLQEGV------VTPLGGTRIKVDIR 449
Query: 289 LIAATNRPDVLDAALLRPGRFDRQI 313
+IAAT+R A L+ GRF +
Sbjct: 450 VIAATHRD---LAQLVEQGRFREDL 471
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 37.0 bits (85), Expect = 0.018
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA 202
TF DV G + + L ++ GRI H L GP G GKT +AR +A
Sbjct: 14 TFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILA 59
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 36.6 bits (84), Expect = 0.020
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 185 LLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDM-----FEQAKNN 239
LL GPPG GKT LA +A +A I+ SD E + ++ + A +
Sbjct: 330 LLCGPPGLGKTTLAHVIAKQAGYSVVEINASD--ERTAPMVKEKIENAVQNHSVLDADSR 387
Query: 240 SPCIVFVDEID 250
C+V +DEID
Sbjct: 388 PVCLV-IDEID 397
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 36.1 bits (83), Expect = 0.027
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA 205
TF ++AG + + L+ L RI L GPPGTGKT A A A
Sbjct: 34 TFDELAGQEHVVQVLK------------NALLRRILPHYLFYGPPGTGKTSTALAFARAL 81
Query: 206 NVP 208
N
Sbjct: 82 NCE 84
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related
ATP-dependent Clp proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 898
Score = 36.1 bits (83), Expect = 0.029
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 157 KEDLQEIVDFLCDPQKFKRLGGRIPHGVLL-VGPPGTGKTLLARAVAGE---ANVPFFTI 212
E + I + + L P L +GP G GKT LA+A+A + F +
Sbjct: 568 DEAVAAIAAAIRRSRA--GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL 625
Query: 213 SGSDFVELFVGVGAS-RVRD------MFEQAKNNSPCIVFVDEID 250
S+F E+ +G+ + E K +V +EI+
Sbjct: 626 DMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670
>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 35.8 bits (84), Expect = 0.038
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 30/87 (34%)
Query: 184 VLLVGPPGTGKTLLARAV---AGEANVPFFTI-----------SGSDFVELFVGV----- 224
VL+ G GTGK L ARA+ + A+ PF + S ELF G
Sbjct: 25 VLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLES-----ELF-GHEKGAF 78
Query: 225 -GASRVRD-MFEQAKNNSPCIVFVDEI 249
GA R +FE A +F+DEI
Sbjct: 79 TGAVSDRKGLFELADGG---TLFLDEI 102
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 35.3 bits (81), Expect = 0.049
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKT----LLARA 200
+D+ G ++ E L I G +P+ +++ GPPGTGKT LAR
Sbjct: 24 SVLQDIVGNEDTVERLSVIAK-----------EGNMPN-LIISGPPGTGKTTSILCLARE 71
Query: 201 VAGEANVP-FFTISGSDFVELFVGVGASRVRDMFEQAKNNSPC----IVFVDEIDAV 252
+ G++ ++ SD E + V ++++ MF Q K P I+ +DE D++
Sbjct: 72 LLGDSYKEAVLELNASD--ERGIDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM 125
>gnl|CDD|37891 KOG2680, KOG2680, KOG2680, DNA helicase TIP49, TBP-interacting
protein [Transcription].
Length = 454
Score = 35.3 bits (81), Expect = 0.058
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGE--ANVPFFTISGSDFVEL 220
++ GR +L+ G PGTGKT +A ++ + PF +ISGS+ L
Sbjct: 63 KIAGRA---ILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSL 107
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 34.9 bits (81), Expect = 0.060
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 169 DPQKFKRLGG----RIPHGVLLVGPPGTGKTLLARAVAGEA 205
D + L G +LL+GPPG GKT LA A+ +A
Sbjct: 31 DRRLIAELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQA 71
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 35.2 bits (81), Expect = 0.065
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 25/103 (24%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI-------SGSDFVELFVGVGASRVRD----M 232
++L+G G GK+ + RA+A N+PF +G E+F G R +
Sbjct: 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEV 64
Query: 233 FEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLL 275
++ + I GGG E+ N L
Sbjct: 65 LKELLEEDNAV--------------IATGGGAVLSEENRNLLK 93
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 34.9 bits (80), Expect = 0.074
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 179 RIPHG--VLLVGPPGTGKTLLARAVAG 203
+ G +L+ G G GKT L RA+AG
Sbjct: 415 EVRPGERLLITGESGAGKTSLLRALAG 441
>gnl|CDD|144592 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1. This
family also contains the NS2 protein. Parvoviruses
encode two non-structural proteins, NS1 and NS2. The
mRNA for NS2 contains the coding sequence for the first
87 amino acids of NS1, then by an alternative splicing
mechanism mRNA from a different reading frame, encoding
the last 78 amino acids, makes up the full length of the
NS2 mRNA. NS1, is the major non-structural protein. It
is essential for DNA replication. It is an 83-kDa
nuclear phosphoprotein. It has DNA helicase and ATPase
activity.
Length = 271
Score = 34.6 bits (80), Expect = 0.083
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTI 212
V GP TGKT LA+A+A VP +
Sbjct: 116 VWFYGPASTGKTNLAQAIA--HAVPLYGC 142
>gnl|CDD|147394 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 447
Score = 34.5 bits (80), Expect = 0.087
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 79 KDIEISSRPVNDGSPGLLSYLGSWFPL 105
KD+E+S P +P ++ SWFP+
Sbjct: 388 KDVELSILPNTAHTPNMI----SWFPI 410
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 34.3 bits (79), Expect = 0.097
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 179 RIPHG--VLLVGPPGTGKTLLARAVAG 203
I G +L+ GP GTGK+ L RA+AG
Sbjct: 23 EIKPGDRLLITGPSGTGKSSLFRALAG 49
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 34.5 bits (79), Expect = 0.10
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDFVELFVGVGASRVRDMFE------- 234
V LVGP G+GK+ L RA+AG I G D +L + R+ + +
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ 87
Query: 235 -----QAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVIL 289
+A +P ++ +DE + G + + L +LL E+ + EG +
Sbjct: 88 RVALARALLLNPDLLLLDEPTS----------GLDPASRERLLELLREL----AEEGRTV 133
Query: 290 IAATNRPDVLDAALLR 305
I T+ P++ + A R
Sbjct: 134 IIVTHDPELAELAADR 149
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 34.2 bits (78), Expect = 0.11
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 183 GVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVELFVGVGASRVRDMFEQAK 237
++L+GPPG GKT LA A+ E V F T +L + A+ E+
Sbjct: 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP-----DLLSKLKAAFDEGRLEEKL 161
Query: 238 NNSPC---IVFVDEI 249
++ +D+I
Sbjct: 162 LRELKKVDLLIIDDI 176
>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 34.0 bits (79), Expect = 0.13
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG--ASRVRDMFE 234
G RI + G GTGKT+L +A A +D VE++V +G V + E
Sbjct: 15 GQRI----GIFGGSGTGKTVLLGMIARNAK--------ADVVEVYVLIGERGREVAEFIE 62
Query: 235 QAKNN 239
+
Sbjct: 63 ELLGE 67
>gnl|CDD|36208 KOG0990, KOG0990, KOG0990, Replication factor C, subunit RFC5
[Replication, recombination and repair].
Length = 360
Score = 33.1 bits (75), Expect = 0.24
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 178 GRIPHGVLLVGPPGTGKTLLARAVA 202
+PH +L GPPGTGKT A A
Sbjct: 60 PGLPH-LLFYGPPGTGKTSTILANA 83
>gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein
and predicted ATPase that is induced by phosphate
starvation.
Length = 205
Score = 32.8 bits (76), Expect = 0.27
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 184 VLLVGPPGTGKTLLARAVAGEA 205
V +GP GTGKT LA A A +A
Sbjct: 22 VFGIGPAGTGKTYLAVAAAVDA 43
>gnl|CDD|38557 KOG3347, KOG3347, KOG3347, Predicted nucleotide kinase/nuclear
protein involved oxidative stress response [Nucleotide
transport and metabolism].
Length = 176
Score = 32.5 bits (74), Expect = 0.33
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---LFVG---------VGASRVRD 231
+L+ G PGTGK+ LA +A + + + I SD V+ L+ G + +V D
Sbjct: 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNLYEGYDEEYKCHILDEDKVLD 67
Query: 232 MFEQAKNNSPCIV 244
E IV
Sbjct: 68 ELEPLMIEGGNIV 80
>gnl|CDD|32701 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 32.5 bits (74), Expect = 0.39
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLL 197
KRLGG IP G +L+ G GTGK++L
Sbjct: 19 KRLGGGIPVGSLILIEGDNGTGKSVL 44
>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 32.3 bits (73), Expect = 0.47
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 154 DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLV-GPPGTGKTLLARAVAGEANVPFFTI 212
D+ DL+++ + RL R P G++LV GP G+GKT A E N P I
Sbjct: 231 DQVILDLEKLGMSPFQLARLLRLLNR-PQGLILVTGPTGSGKTTTLYAALSELNTPERNI 289
Query: 213 -SGSDFVE 219
+ D VE
Sbjct: 290 ITIEDPVE 297
>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 32.2 bits (73), Expect = 0.47
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 121 GGGARGAMGFGKSKAKLLS-GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGR 179
GA +G + + LS V + + V ++ E L+EI D + G
Sbjct: 16 APGAVRILGLREVEGGALSVARVRTTYHQLVEVPEDRSEPLEEIADTWESKSESAGKVGV 75
Query: 180 IPHGVLLVGPPGTGKTLLARAVAGEA 205
+ ++VGP +GK+ L +A +
Sbjct: 76 V----MVVGPVDSGKSTLTTYLANKL 97
>gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 31.9 bits (73), Expect = 0.55
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 534 SEETAQKIDKEVFRLIEEAYQKAKS 558
SEE ++I+KEV + IEEA +KA+S
Sbjct: 272 SEEELKEIEKEVRKEIEEAVKKAES 296
>gnl|CDD|30815 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 31.6 bits (71), Expect = 0.62
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLA 198
+ LGG +P G VL+ GPPGTGKT+ A
Sbjct: 14 EILGGGLPRGSVVLITGPPGTGKTIFA 40
>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 31.5 bits (71), Expect = 0.73
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 183 GVLLVGPPGTGKTLLARAVAG 203
G L+ G GT K+ LARA+A
Sbjct: 40 GALIAGEKGTAKSTLARALAD 60
>gnl|CDD|144897 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members
of this family are aldolase enzymes that catalyse the
first step of the shikimate pathway.
Length = 437
Score = 31.4 bits (72), Expect = 0.83
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 194 KTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMF 233
K LA GEA F + G D E F A +RD F
Sbjct: 47 KEQLADVARGEA----FLLQGGDCAESFAEFTADHIRDKF 82
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 31.1 bits (70), Expect = 0.84
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 127 AMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLL 186
+ ++ + S D+ G + ++L+E + VL+
Sbjct: 57 ELTELQALLPQARPYLKSEALDDLIGESPSLQELREQIKAYAPSGL----------PVLI 106
Query: 187 VGPPGTGKTLLARAV----AGEANVPFFTISGSDFVE 219
+G GTGK L AR + A A PF + + + E
Sbjct: 107 IGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143
>gnl|CDD|36704 KOG1491, KOG1491, KOG1491, Predicted GTP-binding protein (ODN
superfamily) [General function prediction only].
Length = 391
Score = 31.4 bits (71), Expect = 0.84
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 174 KRLGGRIPHGVL--LVGPPGTGKT----LLARAVAGEANVPFFTISGSDFVELFVGVGAS 227
K L GR + + +VG P GK+ L ++ AG AN PF TI D E V V S
Sbjct: 11 KVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTI---DPNEARVEVPDS 67
Query: 228 RVRDMFEQAKNNSPCIVFVDEIDAVG----RHRGIGLG 261
R + S F+ D G G GLG
Sbjct: 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG 105
>gnl|CDD|32040 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 31.4 bits (71), Expect = 0.87
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA 202
+ D+ + +RL R G+L+ G PG GK+ A+A+A
Sbjct: 246 LEDYGLSDKLKERLEER-AEGILIAGAPGAGKSTFAQALA 284
>gnl|CDD|147691 pfam05673, DUF815, Protein of unknown function (DUF815). This
family consists of several bacterial proteins of unknown
function.
Length = 248
Score = 31.3 bits (72), Expect = 0.88
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
V D+ G+D KE L + L G + VLL G GTGK+ L +A+ E
Sbjct: 25 VDLDDLVGIDRQKEALLRNTEQF--------LAGLPANNVLLWGARGTGKSSLVKALLNE 76
Query: 205 AN 206
Sbjct: 77 YA 78
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 31.1 bits (71), Expect = 0.91
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 184 VLLVGPPGTGKTLLARAVA 202
+ L GPPG GK+ LA+ +A
Sbjct: 1 IWLYGPPGCGKSTLAKYLA 19
>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 31.1 bits (70), Expect = 0.93
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 184 VLLVGPPGTGKTLLARAV---AGEANVPFFTISGSDFV------ELFVGV-----GASRV 229
VL+ G GTGK L+ARA+ + + PF ++ + ELF GA
Sbjct: 249 VLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINT 308
Query: 230 R-DMFEQAKNNSPCIVFVDEI 249
R FE A + +F+DEI
Sbjct: 309 RRGRFELADGGT---LFLDEI 326
>gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB..
Length = 226
Score = 30.9 bits (70), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP 208
+ LGG IP G + + G G+GKT L +A EA +P
Sbjct: 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46
>gnl|CDD|147488 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 550
Score = 30.7 bits (70), Expect = 1.3
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 288 ILIAATNR--PDVLDAAL--LRPGRFDRQITVPNPDIVGREHILMVH------SRNVPLA 337
L +A + +VL + P P + RE + VH R VP A
Sbjct: 101 NLASAQGKYLSEVLSMLVSNFVPPPSSTSSLPGYPSVKRREVLSRVHDALRYILRLVPSA 160
Query: 338 PNVILKTIARGTP 350
P+ +L +A+ P
Sbjct: 161 PSFLLPILAKNFP 173
>gnl|CDD|33211 COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino
acid transport and metabolism].
Length = 208
Score = 30.7 bits (69), Expect = 1.3
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 499 MVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQKIDK--EVFRLIEEAYQKA 556
MV GK YE+ E + I E IDK E F LI AY+
Sbjct: 41 MVANLTR----GKKGYEDYDDEMKEIL--EELQKIKAELLALIDKDEEAFNLIMAAYKLP 94
Query: 557 KSIIQEKNDNFVAIAEALLE 576
KS +EK A+ AL E
Sbjct: 95 KSTEEEKAARRKALQNALKE 114
>gnl|CDD|32599 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 287
Score = 30.6 bits (69), Expect = 1.4
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 36/157 (22%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
+ D+ GVD KE L + ++F G + VLL G GTGK+ L +A+ E
Sbjct: 57 IDLADLVGVDRQKEALVR------NTEQF--AEGLPANNVLLWGARGTGKSSLVKALLNE 108
Query: 205 ---ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKN-NSPCIVFVDEIDAVGRHRGIGL 260
+ + D L D+ E + I+F D++
Sbjct: 109 YADEGLRLVEVDKEDLATL---------PDLVELLRARPEKFILFCDDLSF--------- 150
Query: 261 GGGNDEREQTLNQLLVEMDG--FESSEGVILIAATNR 295
+E + L ++G V+ A +NR
Sbjct: 151 ----EEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183
>gnl|CDD|33093 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 30.3 bits (68), Expect = 1.5
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 184 VLLVGPPGTGKTLLARA---VAGEANVPFFTISGSDF------VELF-VGVGASRVRDMF 233
+L+ G GTGK LLA+A + + PF ++ + ELF G + F
Sbjct: 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFF 289
Query: 234 EQAKNNSPCIVFVDEI 249
EQA + V +DEI
Sbjct: 290 EQANGGT---VLLDEI 302
>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 30.3 bits (68), Expect = 1.6
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQ-------- 235
V ++G +GK+ L +A N G ++V +G + + +
Sbjct: 11 VAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAY 70
Query: 236 ---AKNNSPCIVFVD 247
A + + F+D
Sbjct: 71 EDAAVRYANKVAFID 85
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 30.2 bits (68), Expect = 1.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
+L++GPPG GK+ LA+ +A + +P
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLGLP 27
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 29.9 bits (67), Expect = 2.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 184 VLLVGPPGTGKTLLARAV---AGEANVPFFTIS 213
VL+ G GTGK L+ARA+ + A PF ++
Sbjct: 167 VLITGESGTGKELVARAIHQASPRAKGPFIAVN 199
>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB..
Length = 264
Score = 29.8 bits (67), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 171 QKFKRLGGRIPHGVLLV-GPPGTGKTLLARAVAGEANVPFFTIS 213
+ F++L + PHG++LV GP G+GKT + E N P I
Sbjct: 70 EIFRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNTPEKNII 112
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 29.8 bits (67), Expect = 2.3
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 22/106 (20%)
Query: 186 LVGPPGTGKTLLARAVAG--EANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243
LVG G+GK+ LAR +AG + G D + + +R + + + +
Sbjct: 322 LVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-----LDLTGGELRRLRRRIQ-----M 371
Query: 244 VFVDE----------IDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279
VF D D + I GG ER + +LL +
Sbjct: 372 VFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 29.7 bits (67), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 179 RIPHG--VLLVGPPGTGKTLLARAVAG 203
I G VL+VGP G+GK+ L R + G
Sbjct: 23 TIKKGEFVLIVGPNGSGKSTLLRLLNG 49
>gnl|CDD|133293 cd01893, Miro1, Miro1 subfamily. Miro (mitochondrial Rho) proteins
have tandem GTP-binding domains separated by a linker
region containing putative calcium-binding EF hand
motifs. Genes encoding Miro-like proteins were found in
several eukaryotic organisms. This CD represents the
N-terminal GTPase domain of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however, Miro
is one of few Rho subfamilies that lack this feature.
Length = 166
Score = 29.6 bits (67), Expect = 2.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
++L+G G GK+ L ++ E
Sbjct: 3 IVLIGDEGVGKSSLIMSLVSEEFPE 27
>gnl|CDD|133100 cd06242, Peptidase_M14-like_1_5, Peptidase M14-like domain of a
functionally uncharacterized subgroup of the M14 family
of metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 268
Score = 29.7 bits (67), Expect = 2.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 190 PGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI 249
P GK L A+ + E P+FT S + + L + A + + F+ E
Sbjct: 196 PNAGKALEAKGLRWE---PYFTGSVGNDIILIQEDTTAAQIG--RNAMGLTQALSFLIET 250
Query: 250 DAVGRHRGIGLGGGNDER 267
RGIGLG N +R
Sbjct: 251 ------RGIGLGDQNFQR 262
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 29.5 bits (66), Expect = 2.8
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 184 VLLVGPPGTGKTLLARAVAGE 204
L++GPPG+GKT L +A+AG+
Sbjct: 144 TLVLGPPGSGKTTLLKALAGK 164
Score = 27.9 bits (62), Expect = 8.0
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 183 GVL--LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMF------- 233
GVL L+G G GKT L +AG I G + G + ++ F
Sbjct: 817 GVLTALMGESGAGKTTLLDVLAGRKTG--GYIEGDILIS-----GFPKDQETFARVSGYV 869
Query: 234 EQAKNNSPCI 243
EQ +SP +
Sbjct: 870 EQQDIHSPEL 879
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 29.7 bits (67), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 179 RIPHG--VLLVGPPGTGKTLLARAVAGE 204
+P G V +VGP G+GK+ L A+ GE
Sbjct: 27 EVPKGELVAIVGPVGSGKSSLLSALLGE 54
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 29.4 bits (66), Expect = 2.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAG 203
L I G V+L+GP G GKT R +AG
Sbjct: 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48
>gnl|CDD|39781 KOG4581, KOG4581, KOG4581, Predicted membrane protein [Function
unknown].
Length = 359
Score = 29.3 bits (65), Expect = 3.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLG 177
+GN+ + F + G+D K D + +VD + + R G
Sbjct: 114 AGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFG 152
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 29.5 bits (66), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 169 DPQKFKRLGGRIPHGVLL--VGPPGTGKTLLARAVAGE 204
K + I G L+ VGP G+GK+ L A+ GE
Sbjct: 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE 570
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 29.5 bits (66), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAG 203
L +P G +L+ GP G GKT L R + G
Sbjct: 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V+L+GP G GK+ L R +AG
Sbjct: 32 VVLLGPSGCGKSTLLRMIAG 51
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 29.4 bits (66), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
VL++G PG+G + L +A+A
Sbjct: 36 VLVLGRPGSGCSTLLKALAN 55
>gnl|CDD|31888 COG1702, PhoH, Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms].
Length = 348
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 184 VLLVGPPGTGKTLLARAVAGEA 205
V +GP GTGKT LA A A +A
Sbjct: 146 VFGIGPAGTGKTYLAVAKAVDA 167
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 29.0 bits (65), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 186 LVGPPGTGKTLLARAVAG 203
+VG G+GK+ LAR +AG
Sbjct: 38 IVGESGSGKSTLARLLAG 55
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 29.3 bits (66), Expect = 3.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 188 GPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFE 234
GP G+GK+ +A+ +A + +P+ G E VG AS V + E
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEE--VGKLASEVAAIPE 50
>gnl|CDD|163650 cd07407, MPP_YHR202W_N, Saccharomyces cerevisiae YHR202W and
related proteins, N-terminal metallophosphatase domain.
YHR202W is an uncharacterized Saccharomyces cerevisiae
UshA-like protein with two domains, an N-terminal
metallophosphatase domain and a C-terminal nucleotidase
domain. The N-terminal metallophosphatase domain
belongs to a large superfamily of distantly related
metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 282
Score = 29.2 bits (66), Expect = 3.8
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 226 ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD 279
AS V M E+A ++ VD D H G GL + N + M
Sbjct: 35 ASFVEHMREKADQKGVDLLLVDTGD---LHDGNGLSDASPPPGSYSNPIFRMMP 85
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 29.2 bits (66), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 184 VLLVGPPGTGKTLLARAVA 202
V+L G G+GKT L + +A
Sbjct: 3 VILQGEAGSGKTTLLQKLA 21
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
component of ABC (ATPase Binding Cassette)-type
transport systems that are predicted to be involved in
uptake of amino acids. This subgroup includes the type
I periplasmic binding component of ABC (ATPase Binding
Cassette)-type transport systems that are predicted to
be involved in uptake of amino acids. Members of this
subgroup are sequence-similar to members of the family
of ABC-type hydrophobic amino acid transporters (HAAT),
such as leucine-isoleucine-valine-binding protein
(LIVBP); their ligand specificity has not been
determined experimentally, however.
Length = 312
Score = 29.1 bits (66), Expect = 3.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSD 216
++GP T T+ VA EA P +++ +
Sbjct: 68 DAIIGPSTTPATMAVAPVAEEAKTPMISLAPAA 100
>gnl|CDD|31933 COG1747, COG1747, Uncharacterized N-terminal domain of the
transcription elongation factor GreA [Function unknown].
Length = 711
Score = 29.2 bits (65), Expect = 4.1
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 553 YQKAKSIIQEKNDNFVAIAEALLEY---ETLSGKEIASL---IRGEKIS 595
+ + + N+ ++ E L+EY + + G+E+A I+ K +
Sbjct: 103 LELLQCYKENGNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAA 151
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 29.0 bits (65), Expect = 4.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 174 KRLGGRIPHGVLLV--GPPGTGKTLLARAVAGEANVPFFTISGS 215
K + G+ G L GP G GK+ L A+AG +SG
Sbjct: 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGE 67
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 29.2 bits (66), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 181 PHGVLLVGPPGTGKTLLARA 200
P V +VGPPG GKT L ++
Sbjct: 39 PLVVAVVGPPGVGKTTLIKS 58
>gnl|CDD|177027 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 28.9 bits (65), Expect = 4.1
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 176 LGGRIPHGVLLVGPPGTGKTLLARAVA---GEANVPFFTISGSDFVEL----------FV 222
LG R + +L+G PG GKT +A +A +VP + L +
Sbjct: 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE-DKLVITLDIGLLLAGTKYR 253
Query: 223 GVGASRVRDMFEQAKNNSPCIVFVDEI 249
G R++ +F++ + N+ I+ +DE+
Sbjct: 254 GEFEERLKRIFDEIQENNNIILVIDEV 280
Score = 27.7 bits (62), Expect = 9.8
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 17/51 (33%)
Query: 185 LLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR-DMFE 234
L GP G GKT L +A+A F G + +R DM E
Sbjct: 543 LFSGPTGVGKTELTKALA----------------SYFFGSEDAMIRLDMSE 577
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 29.1 bits (65), Expect = 4.1
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 180 IPHG--VLLVGPPGTGKTLLARAVAG 203
IP G V L+GP G+GKT L R +AG
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAG 50
>gnl|CDD|37913 KOG2702, KOG2702, KOG2702, Predicted panthothenate kinase/uridine
kinase-related protein [Nucleotide transport and
metabolism, Coenzyme transport and metabolism].
Length = 323
Score = 28.9 bits (64), Expect = 4.3
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
V FKD + DE P K++ L L G PGTGK+ AV
Sbjct: 95 VLFKDHSEDDEFY------------PVKYEALTSNNEELTGLAGRPGTGKSTRIAAVDNA 142
Query: 205 ANV 207
V
Sbjct: 143 WPV 145
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 28.7 bits (64), Expect = 4.7
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVA------GEANVPFFTI 212
+RL + G VLL G G GKT L R +A G P FT+
Sbjct: 16 ERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL 62
>gnl|CDD|29990 cd01124, KaiC, KaiC is a circadian clock protein primarily found in
cyanobacteria KaiC is a RecA-like ATPase, having both
Walker A and Walker B motifs. A related protein is found
in archaea..
Length = 187
Score = 28.7 bits (64), Expect = 4.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 184 VLLVGPPGTGKT------LLARAVAGEANVPFFTIS 213
LL G PGTGKT L A GE + T+
Sbjct: 2 TLLSGGPGTGKTTFALQFLYAGLARGE-PGLYVTLE 36
>gnl|CDD|32059 COG1875, COG1875, Predicted ATPase related to phosphate
starvation-inducible protein PhoH [Signal transduction
mechanisms].
Length = 436
Score = 28.7 bits (64), Expect = 4.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 184 VLLVGPPGTGKTLLARAVAGEA 205
V L G GTGKTLLA A E
Sbjct: 248 VSLGGKAGTGKTLLALAAGLEQ 269
>gnl|CDD|35293 KOG0070, KOG0070, KOG0070, GTP-binding ADP-ribosylation factor Arf1
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 181
Score = 28.7 bits (64), Expect = 5.1
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 173 FKRLGGRIPHGVLLVGPPGTGKT-LLARAVAGEA---------NVPFFTISGSDFVELFV 222
F L G+ +L+VG GKT +L + GE NV F V
Sbjct: 9 FSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDV 68
Query: 223 GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282
G G ++R +++ N+ ++FV +D+ R R +E ++ L+++L E
Sbjct: 69 G-GQEKLRPLWKHYFQNTQGLIFV--VDSSDRER-------IEEAKEELHRMLAE----P 114
Query: 283 SSEGVILIAATNRPDVLDA 301
L+ N+ D+ A
Sbjct: 115 ELRNAPLLVFANKQDLPGA 133
>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase..
Length = 186
Score = 28.7 bits (64), Expect = 5.4
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 172 KFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221
+ L +L+ G G+GKT L A+ I+ D EL
Sbjct: 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQ 65
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion..
Length = 165
Score = 28.5 bits (63), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
+L+ GP G+GKT LA +A
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATK 26
>gnl|CDD|33013 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism].
Length = 445
Score = 28.8 bits (64), Expect = 5.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 194 KTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMF 233
+ LAR GEA F + G D E F GA +RD F
Sbjct: 50 QEQLARVAKGEA----FLLQGGDCAESFADHGADNIRDNF 85
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 28.4 bits (63), Expect = 5.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V L+GP G GK+ L R +AG
Sbjct: 31 VALLGPSGAGKSTLLRIIAG 50
>gnl|CDD|29989 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 ..
Length = 235
Score = 28.6 bits (64), Expect = 5.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 174 KRLGGRIPHGVL--LVGPPGTGKTLLARAVAGEANVP 208
+ LGG I G + + G G+GKT L +A +P
Sbjct: 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLP 46
>gnl|CDD|37017 KOG1806, KOG1806, KOG1806, DEAD box containing helicases
[Replication, recombination and repair].
Length = 1320
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 176 LGGRIPHGVLLVGPPGTGKTLLA 198
L G P ++VGPPGTGKT +A
Sbjct: 748 LSGMQPGLTMVVGPPGTGKTDVA 770
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.2 bits (62), Expect = 6.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 181 PHGVLLVGPPGTGKTLLARAV 201
P V +VGPPGTGK+ L R++
Sbjct: 69 PFIVAVVGPPGTGKSTLIRSL 89
>gnl|CDD|147155 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 103
Score = 28.3 bits (64), Expect = 6.7
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSP 241
L+V G+GKTL A + + LF+ R +D+ EQA
Sbjct: 19 KRGLIVMATGSGKTLTAAKLIARLLKGKKKV-------LFL---VPR-KDLLEQALEE-- 65
Query: 242 CIVFVDE 248
++ +DE
Sbjct: 66 FVIIIDE 72
>gnl|CDD|176451 cd08769, DAP_dppA_2, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 270
Score = 28.4 bits (64), Expect = 6.7
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 193 GKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV 252
+TL+ A AGE VP ++G +E ++ K +P VFV +++
Sbjct: 134 NETLINAAYAGEFGVPVVLVAGDSELE--------------KEVKEETPWAVFVPTKESL 179
Query: 253 GRH 255
R+
Sbjct: 180 SRY 182
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 28.3 bits (63), Expect = 6.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 183 GVLLVGPPGTGKTLLARAVAG 203
+ ++GP G+GK+ LAR + G
Sbjct: 364 ALGIIGPSGSGKSTLARLLVG 384
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 28.4 bits (63), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 184 VLLVGPPGTGKTLLARAVA 202
L++GPP GKT L R +A
Sbjct: 140 TLIIGPPQVGKTTLLRDIA 158
>gnl|CDD|34269 COG4650, RtcR, Sigma54-dependent transcription regulator containing
an AAA-type ATPase domain and a DNA-binding domain
[Transcription / Signal transduction mechanisms].
Length = 531
Score = 28.1 bits (62), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAV 201
++ +R+ R +LL GP G GK+ LAR +
Sbjct: 198 EQIERVAIRSRAPILLNGPTGAGKSFLARRI 228
>gnl|CDD|176475 cd08638, DNA_pol_A_theta, DNA polymerase theta is a low-fidelity
family A enzyme implicated in translesion synthesis and
in somatic hypermutation. DNA polymerase theta is a
low-fidelity family A enzyme implicated in translesion
synthesis (TLS) and in somatic hypermutation (SHM).
DNA-dependent DNA polymerases can be classified in six
main groups based upon phylogenetic relationships with
E. coli polymerase I (classA), E. coli polymerase II
(class B), E.coli polymerase III (class C),
euryarchaaeota polymerase II (class D), human polymerase
beta (class x), E. coli UmuC/DinB and eukaryotic RAP
30/Xeroderma pigmentosum variant (class Y). Family A
polymerase functions primarily to fill DNA gaps that
arise during DNA repair, recombination and replication.
Pol theta is an exception among family A polymerases and
generates processive single base substitutions. Family A
polymerase are found primarily in organisms related to
prokaryotes and include prokaryotic DNA polymerase I
(pol I) ,mitochondrial polymerase delta, and several
bacteriphage polymerases including those from
odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is
have two functional domains located on the same
polypeptide; a 5'-3' polymerase and 5'-3' exonuclease.
Pol I uses its 5' nuclease activity to remove the
ribonucleotide portion of newly synthesized Okazaki
fragments and DNA polymerase activity to fill in the
resulting gap. Polymerase theta mostly has
amino-terminal helicase domain, a carboxy-terminal
polymerase domain and an intervening space region.
Length = 373
Score = 28.3 bits (64), Expect = 7.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 535 EETAQKIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLS 581
E + ++ L EEAY+ + E+ + + +LEY LS
Sbjct: 10 ERQRALLQAKLKELEEEAYRSTSKEVLEQLKRLHPLPKLILEYRKLS 56
>gnl|CDD|37754 KOG2543, KOG2543, KOG2543, Origin recognition complex, subunit 5
[Replication, recombination and repair].
Length = 438
Score = 28.4 bits (63), Expect = 7.0
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 168 CDPQKFKRLGG----RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG 223
++ K L G IP V + G GTGKT L R + + N+ ++
Sbjct: 13 SQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN------VWLNC--- 63
Query: 224 VGASRVRDMFEQAKNNS 240
V + E+ N S
Sbjct: 64 VECFTYAILLEKILNKS 80
>gnl|CDD|34852 COG5255, COG5255, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 239
Score = 28.4 bits (63), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 410 HEAGHAVVACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTT 454
G+ VV CH+ + +I R R L M P AD+ + T
Sbjct: 38 PFPGNTVV-CHLVTGSDTEEVVLIIRSRYLEM----PFADKLTFT 77
>gnl|CDD|107321 cd06326, PBP1_STKc_like, Type I periplasmic binding domain of
uncharacterized extracellular ligand-binding proteins.
The type I periplasmic binding domain of uncharacterized
extracellular ligand-binding proteins, some of which
contain a conserved catalytic serine/threonine protein
kinase (STKc) domain in the N-terminal region. Members
of this group are sequence-similar to the branched-chain
amino acid ABC transporter
leucine-isoleucine-valine-binding protein (LIVBP); their
ligand specificity has not been determined
experimentally, however.
Length = 336
Score = 28.3 bits (64), Expect = 7.1
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243
L G GT T A + EA VP GAS +RD +
Sbjct: 70 FALFGYVGTPTTAAALPLLEEAGVPLV----------GPFTGASSLRD------PPDRNV 113
Query: 244 VFV-----DEIDAVGRH-RGIGL 260
V DEI A+ RH +GL
Sbjct: 114 FNVRASYADEIAAIVRHLVTLGL 136
>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 28.1 bits (62), Expect = 7.2
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 172 KFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD 231
+ + P +L++GP GKT L + + I+ D + +
Sbjct: 28 RLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINFDD--LRLDRIELLDLLR 85
Query: 232 MFEQAKNNSPCIVFVDEIDAV 252
+ + K +F+DEI V
Sbjct: 86 AYIELKEREKSYIFLDEIQNV 106
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.1 bits (62), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 183 GVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGA 226
+LL G PG GKT L A+A + I+ S+ +L G+
Sbjct: 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGS 1588
>gnl|CDD|144702 pfam01202, SKI, Shikimate kinase.
Length = 158
Score = 28.3 bits (64), Expect = 7.3
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 190 PGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEI 249
G GKT + R +A +PF +E G + ++FE+ + + +
Sbjct: 1 MGAGKTTIGRLLAKALGLPFIDT--DQEIEKRTG---MSIAEIFEEEGEEGFRRLESEVL 55
Query: 250 DAVGRHRG--IGLGGGNDEREQTLNQL 274
+ I GGG E+ + L
Sbjct: 56 KELLAEHNAVIATGGGAVLSEENRDLL 82
>gnl|CDD|37013 KOG1802, KOG1802, KOG1802, RNA helicase nonsense mRNA reducing
factor (pNORF1) [RNA processing and modification].
Length = 935
Score = 28.1 bits (62), Expect = 7.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 185 LLVGPPGTGKTLLARAV 201
L+ GPPGTGKT+ + +
Sbjct: 429 LIQGPPGTGKTVTSATI 445
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 28.3 bits (63), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
+++ GP +GKT LA A+A
Sbjct: 6 IVIAGPTASGKTALAIALAKRLGGE 30
>gnl|CDD|31266 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
modification, protein turnover, chaperones].
Length = 647
Score = 28.3 bits (63), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 353 SGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEK 404
DL NLV EA +A R+L+T ++ E+A K + + + E+ K
Sbjct: 364 RLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQLAERYIEDIK 415
>gnl|CDD|146080 pfam03266, DUF265, Protein of unknown function, DUF265.
Length = 168
Score = 27.9 bits (63), Expect = 7.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214
+ + GPPG GKT L + V + G
Sbjct: 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGG 32
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 28.0 bits (62), Expect = 7.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V L+GP G GKT L R +AG
Sbjct: 34 VTLLGPSGCGKTTLLRMIAG 53
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 28.0 bits (62), Expect = 7.8
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 510 GKVSYEEGQQEALLSHPVSRPRSISEETAQK-IDKE----------VFRLIEEAYQKAKS 558
GK+ E LL S + +EE A + KE F+ I E+ +
Sbjct: 960 GKIYIPEDPDPELLDLEESPTSAPAEELATADVYKELRLRGYDYGGHFQGILESDLSGDT 1019
Query: 559 IIQEKNDNFVAIAEALLEYETLS 581
+ DN+V+ + +L++ LS
Sbjct: 1020 GRLQWKDNWVSFMDTMLQFSILS 1042
>gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 28.3 bits (64), Expect = 7.8
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFT 211
RL G I + VLLVG PGT K+ L + VA A +T
Sbjct: 53 RLRGDI-N-VLLVGDPGTAKSQLLKYVAKLAPRAVYT 87
>gnl|CDD|33609 COG3816, COG3816, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 205
Score = 28.0 bits (62), Expect = 7.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 276 VEMDGFESSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPDIVGREHILMVHSRN 333
VEMD +L TN DV++A P RF D + P ++ R + + +R+
Sbjct: 104 VEMDVSGEGGEQVLTFRTNVGDVVEAGAEHPLRFEIDPETGELKPYVLVRGRLEALVARS 163
Query: 334 V 334
V
Sbjct: 164 V 164
>gnl|CDD|36167 KOG0949, KOG0949, KOG0949, Predicted helicase, DEAD-box superfamily
[General function prediction only].
Length = 1330
Score = 28.1 bits (62), Expect = 7.9
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 540 KIDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSE 599
K D V + +Q+ ++N++ V +A T +GK S EK+ R S+
Sbjct: 502 KKDPRVHDFCPDEWQRELLDSVDRNESAVIVAP------TSAGKTFISFYAIEKVLRESD 555
Query: 600 DDGVALCA 607
D V A
Sbjct: 556 SDVVIYVA 563
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 28.2 bits (63), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 179 RIPHGVL-LVGPPGTGKTLLARAVAG 203
+ G+ L+GP G GKT L R +A
Sbjct: 22 TLGPGMYGLLGPNGAGKTTLMRILAT 47
>gnl|CDD|32257 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 27.9 bits (62), Expect = 8.1
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 157 KEDLQEIVDFLC---DPQKFKR-------LGGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206
K++++E+ L DP+ KR + P +L+ G G GK+ +A +A
Sbjct: 55 KDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLG 114
Query: 207 VPFFTISGSDFVELFV 222
+ ++ +D + +
Sbjct: 115 IR--SVISTDSIREVL 128
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 28.1 bits (63), Expect = 8.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 179 RIPHG--VLLVGPPGTGKTLLARAVAG 203
I G V +VGP G+GK+ L + +
Sbjct: 24 TIKPGEKVAIVGPSGSGKSTLLKLLLR 50
>gnl|CDD|29752 cd01149, HutB, Hemin binding protein HutB. These proteins have
been shown to function as initial receptors in ABC
transport of hemin and hemoproteins in many eubacterial
species. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. A typical TroA
protein is comprised of two globular subdomains
connected by a single helix and can bind the metal ion
in the cleft between these domains..
Length = 235
Score = 27.9 bits (62), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 334 VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTM 378
+ P+VIL ++RG G D + A A RN+R++ M
Sbjct: 188 IAAQPDVIL-VMSRGLDAVGGVDGLLKLPGLAQTPAGRNKRILAM 231
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V ++GP G GK+ L R +AG
Sbjct: 32 VAILGPSGCGKSTLLRLIAG 51
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 27.8 bits (62), Expect = 8.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 180 IPHG--VLLVGPPGTGKTLLARAVAG 203
I G V L+GP G+GK+ L R +AG
Sbjct: 23 IEAGEIVALLGPSGSGKSTLLRCIAG 48
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 28.1 bits (63), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V LVGP G GK+ L R +AG
Sbjct: 33 VALVGPSGCGKSTLLRIIAG 52
>gnl|CDD|37179 KOG1968, KOG1968, KOG1968, Replication factor C, subunit RFC1
(large subunit) [Replication, recombination and repair].
Length = 871
Score = 28.1 bits (62), Expect = 8.8
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 153 VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
+A + L + D K +LL GPPG GKT A A E
Sbjct: 329 SKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKE 380
>gnl|CDD|145117 pfam01786, AOX, Alternative oxidase. The alternative oxidase is
used as a second terminal oxidase in the mitochondria,
electrons are transfered directly from reduced ubiquinol
to oxygen forming water. This is not coupled to ATP
synthesis and is not inhibited by cyanide, this pathway
is a single step process. In rice the transcript levels
of the alternative oxidase are increased by low
temperature.
Length = 214
Score = 28.0 bits (63), Expect = 8.8
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 26 ISYSQFIKDVDAGRVRK 42
++Y+ F+KD++AG++
Sbjct: 155 VTYTHFLKDIEAGKLPN 171
>gnl|CDD|36746 KOG1533, KOG1533, KOG1533, Predicted GTPase [General function
prediction only].
Length = 290
Score = 27.9 bits (62), Expect = 8.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 181 PHGVLLVGPPGTGKT 195
P G +++GPPG+GK+
Sbjct: 2 PFGQVVIGPPGSGKS 16
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 27.9 bits (62), Expect = 8.9
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 132 KSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG--VLLVGP 189
++LS G + F++V ++ D++ K + +IP G V LVGP
Sbjct: 338 SKGGRVLSSIKGEIEFRNVCFSYPSRPDVK----------ILKGVSLKIPSGQTVALVGP 387
Query: 190 PGTGKT----LLAR 199
G+GK+ LLAR
Sbjct: 388 SGSGKSTLIQLLAR 401
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 27.7 bits (62), Expect = 9.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 186 LVGPPGTGKTLLARAVAGE 204
LVG G GK+ L + +AGE
Sbjct: 31 LVGRNGAGKSTLLKLIAGE 49
>gnl|CDD|36919 KOG1707, KOG1707, KOG1707, Predicted Ras related/Rac-GTP binding
protein [Defense mechanisms].
Length = 625
Score = 28.0 bits (62), Expect = 9.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
++L+G G GKT L ++ E V
Sbjct: 12 IVLIGDEGVGKTSLIMSLLEEEFVD 36
>gnl|CDD|30362 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 27.8 bits (62), Expect = 9.3
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 186 LVGPPGTGK-TL---LARAVAGEANVPFFTISGSDFVELFVGVGASRVR--DMFEQAKNN 239
+VG P GK TL L +A A AN PF TI E VGV D +
Sbjct: 7 IVGLPNVGKSTLFNALTKAGAEIANYPFCTI------EPNVGVVYVPDCRLDELAEIVKC 60
Query: 240 SPCIV-----FVDEIDAV-GRHRGIGLG 261
P I FVD V G +G GLG
Sbjct: 61 PPKIRPAPVEFVDIAGLVKGASKGEGLG 88
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 27.8 bits (62), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 176 LGGRIPHGVL--LVGPPGTGKTLLARAVAG 203
+ + G +VGP G GK+ L +A+ G
Sbjct: 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47
>gnl|CDD|32119 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 27.9 bits (62), Expect = 9.4
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE---LFVGVGASR---------VRD 231
+ + G PG GKT + + + E I ++ + L+ R +R
Sbjct: 3 IAITGTPGVGKTTVCKLLR-ELGYKV--IELNELAKENGLYTEYDELRKSVIVDVDKLRK 59
Query: 232 MFEQAKNNSPCIV 244
E+ IV
Sbjct: 60 RLEELLREGSGIV 72
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.380
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,563,447
Number of extensions: 415177
Number of successful extensions: 1789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 227
Length of query: 647
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 547
Effective length of database: 4,102,837
Effective search space: 2244251839
Effective search space used: 2244251839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)