BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus
Liberibacter asiaticus str. psy62]
(647 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/647 (100%), Positives = 647/647 (100%)
Query: 1 MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60
MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS
Sbjct: 1 MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60
Query: 61 FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120
FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ
Sbjct: 61 FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120
Query: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180
GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI
Sbjct: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180
Query: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240
PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS
Sbjct: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240
Query: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300
PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD
Sbjct: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300
Query: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360
AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL
Sbjct: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360
Query: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420
VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH
Sbjct: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420
Query: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480
VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN
Sbjct: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480
Query: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540
VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK
Sbjct: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540
Query: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600
IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED
Sbjct: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600
Query: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647
DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ
Sbjct: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 45.1 bits (105), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237
+P +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A
Sbjct: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111
Query: 238 N 238
N
Sbjct: 112 N 112
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 40.8 bits (94), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQAKNNS-- 240
+LLVGP G GKT LA+ +A +VPF + E +VG + QA + +
Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
Query: 241 ---PCIVFVDEIDAVGR 254
IV++DE+D + R
Sbjct: 176 RAQRGIVYIDEVDKISR 192
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207
+D G+++ KE I+++L + + G I + VGPPG GKT LA+++A
Sbjct: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392
Query: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253
+ +S G + E ++G R+ ++AK ++P ++ +DEID +G
Sbjct: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 37.7 bits (86), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214
VL VGPPG GKT LA+ VA E V F + SG
Sbjct: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 29.3 bits (64), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFVELFVG--VGASRVR 230
L R + +L+G PG GKT + +A ++P ++ G + L +G + ++ R
Sbjct: 194 LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGALIAGAKFR 252
Query: 231 DMFEQAKNNSPC---------IVFVDEI 249
FE+ + C I+F+DE+
Sbjct: 253 GEFEERLKSLLCEIRSEDGEIILFIDEL 280
Score = 25.0 bits (53), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 151 AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVA 202
A V+ L+ L DPQ+ P G + +GP G GKT L +++A
Sbjct: 575 AAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLA 619
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 28.9 bits (63), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP------ 208
E++ + LC K + L VG PG GKT +A A + VP
Sbjct: 211 EEINRTIQILCRRSK---------NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGA 261
Query: 209 -FFTISGSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV---GRHRGIGLGG 262
F++ + + + G R++ + ++ ++ + I+++DEI + G GI +
Sbjct: 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA 321
Query: 263 GN 264
N
Sbjct: 322 SN 323
Score = 28.9 bits (63), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLV-GPPGT 192
L N+G+V + G +EA + L + L DP K P G + GP G
Sbjct: 471 LEKNLGTVVY----GQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGV 518
Query: 193 GKTLLARAVAGEANVPFFTISGSDFVEL------------FVGVGASRVRDMFEQAKNNS 240
GKT +++ +A V S+++E +VG G + + + N
Sbjct: 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNP 576
Query: 241 PCIVFVDEID 250
+V +DEI+
Sbjct: 577 YSVVLLDEIE 586
>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 401
Score = 28.1 bits (61), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276
I ++DE+ AVG H G G ERE +N++ +
Sbjct: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240
>gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 27.7 bits (60), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 112 WMFLMRQIQGGGARGAMG 129
W L++ +QG GAR AMG
Sbjct: 71 WFMLLQSVQGVGARVAMG 88
>537021.9.peg.472_1
Length = 369
Score = 27.3 bits (59), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206
GRI +L G G GKT AR +A N
Sbjct: 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46
>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 201
Score = 27.3 bits (59), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
++ +GPPG+GK A ++ + NVP
Sbjct: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
psy62]
Length = 364
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 398 AMTEEEKKITAYHEAGHAVVACHVPKADPLHKAT 431
++TE ++ ITAY E GH ++AC V + + + T
Sbjct: 98 SLTEGDQMITAYREHGH-ILACGVDASKIMAELT 130
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 185 LLVGPPGTGKTLLARAVA 202
L+V PP TGKT+L + +A
Sbjct: 178 LIVAPPRTGKTILLQNIA 195
>gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 250
Score = 25.8 bits (55), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 45 VIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISS---RPVN 89
V+ I+GFYVNG + ++P LL K IE+SS RPV+
Sbjct: 125 VLSVVISGFYVNGLGFLRLFIP-KDIPLLIKPLVCFIEVSSFLFRPVS 171
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFT 211
V+LVGP G+GK+ LA + ++ F+
Sbjct: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 25.4 bits (54), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 166 FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
L D FK G I V ++GP G GKT L R + G+
Sbjct: 331 LLIDNLSFKLPPGGI---VGVIGPNGAGKTTLFRMLTGD 366
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 184 VLLVGPPGTGKTLLARAVAG 203
V L+GP G+GK+ +A+ + G
Sbjct: 39 VTLIGPNGSGKSTIAKLITG 58
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 25.0 bits (53), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230
H +L+G G GKT +A+ V + S+++ + VGV R R
Sbjct: 3 HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 25.0 bits (53), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204
K RI +G + +VGP G GKT L + + G+
Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD------MFEQAKNN 239
L+G G+GK+ L R +AG +S S LF G +++D + Q
Sbjct: 48 LLGRSGSGKSTLLRIIAG-------LVSPSSGQVLFKG---KKIKDPPKDISVVFQTFAL 97
Query: 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL-LVEMDGFESS 284
P + ++ ++ + +GI + R++ L+ + L+ +DGFES+
Sbjct: 98 FPWLTVLENVELGLKAKGI---DKEERRKRALSAIDLIGLDGFESA 140
>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 185
Score = 23.9 bits (50), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 433 IPRGRALGMVMQLPEADRHSTTYVWMTSRLTI 464
+ G+ALG V++ ++ST Y W+ L +
Sbjct: 33 VANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 23.9 bits (50), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 148 KDVAGVDEAKEDLQEIVDFLCDP--QKFKRLGGRIPHGVLLVGPPGTGKT 195
KDV+ V D+ E++ + P + F PH +L+VG G GKT
Sbjct: 77 KDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,237
Number of Sequences: 1233
Number of extensions: 17067
Number of successful extensions: 78
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 29
length of query: 647
length of database: 328,796
effective HSP length: 80
effective length of query: 567
effective length of database: 230,156
effective search space: 130498452
effective search space used: 130498452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)