HHsearch alignment for GI: 254780546 and conserved domain: TIGR00268
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.44 E-value=2.4e-12 Score=106.28 Aligned_cols=164 Identities=19% Similarity=0.296 Sum_probs=123.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHH-HHHHHHHHHHHHCCCC
Q ss_conf 99999999852799839999669424899999999999864899729999996677987-846-8999999999871898
Q gi|254780546|r 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAK-DEVRYVSDVCSRLRIA 83 (423)
Q Consensus 6 ~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~-~e~~~v~~~~~~lgi~ 83 (423)
T Consensus 2 L~~L~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~------g~~~lait~~---sP~~sp~~el~~A~~~A~~~g~~ 72 (263)
T TIGR00268 2 LENLRNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVA------GTEVLAITVV---SPSISPRRELEDAKAIAKEIGVK 72 (263)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH------HHCEEEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 46888898767640816999517465899999998753------1011357876---27757354489999999880830
Q ss_pred EEEEEEECCC-C--CCCCHHHH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8999975047-8--77803788---8545555432001234420123456665668999986236544433223576410
Q gi|254780546|r 84 HSVVSWKNSK-P--QTGLMAAA---REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 (423)
Q Consensus 84 ~~~~~~~~~~-~--~~~~~~~a---r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~ 157 (423)
T Consensus 73 he~~~~d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dGtN~dDL~~------~RP---------G~~A~- 136 (263)
T TIGR00268 73 HELVKIDKMANPNFRANVEERCYFCKKKVLSILVKLAEKRGYDVVVDGTNADDLED------HRP---------GLRAV- 136 (263)
T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCC---------HHHHH-
T ss_conf 12110012368500168854441548889999899998639957982346200023------675---------13567-
Q ss_pred CCCCCCEEE-CCH--HCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 035796871-012--1042899999899818932026678642
Q gi|254780546|r 158 LYDLNLWIS-RPF--LRCRREDIRSFLLQRNISWCEDPSNTDD 197 (423)
Q Consensus 158 ~~~~~~~i~-RPL--L~~~r~~l~~~~~~~~i~wveDpSN~d~ 197 (423)
T Consensus 137 ---~E~~g~~SP~aef~I~K~eir~ia~~lg~~~~DKP~~~CL 176 (263)
T TIGR00268 137 ---KELNGVYSPWAEFGITKKEIREIAKSLGLSFYDKPSEACL 176 (263)
T ss_pred ---HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf ---6607886872002568799999999748898888662102