HHsearch alignment for GI: 254780546 and conserved domain: TIGR00420

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=98.91  E-value=6.3e-09  Score=82.15  Aligned_cols=168  Identities=17%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-----CCC-------------CCCCHHHHHHHHHHHHHHCC
Q ss_conf             839999669424899999999999864899729999996-----677-------------98784689999999998718
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHC-------------LRETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v-----dHg-------------lr~~s~~e~~~v~~~~~~lg   81 (423)
T Consensus         1 ~kv~VglSGGVDSSVsA~lL~~q-------g~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LG   73 (394)
T TIGR00420         1 KKVIVGLSGGVDSSVSAYLLKQQ-------GYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLG   73 (394)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             94899806854789999999714-------96589998776512466664431656246778836887999999998559


Q ss_pred             CCEEEEEEE-----------------CCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHH-HHHHHHH--
Q ss_conf             988999975-----------------047877803788854555543200123---44201234566656-6899998--
Q gi|254780546|r   82 IAHSVVSWK-----------------NSKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQ-LETVYMR--  138 (423)
Q Consensus        82 i~~~~~~~~-----------------~~~~~~~~~~~ar~~r~~~~~~~~~~~---~~~~l~~ah~~dD~-~Et~l~r--  138 (423)
T Consensus        74 i~l~~~nf~~~Y~~~Vf~~~i~~y~~G~TPnPDi~CN-~~iKFG~~~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~  152 (394)
T TIGR00420        74 IPLEKVNFQKEYWNKVFEPFIQEYKEGLTPNPDILCN-KLIKFGLLLEYAKQLLGTGNDKIATGHYARIAQEIENKSLFE  152 (394)
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHH
T ss_conf             8189855078878888899999873677778620047-120037899999985289954344244765443421310144


Q ss_pred             HHCCCCC--CC-CCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC--CCCCC-CCCCCCCCC
Q ss_conf             6236544--43-32235764100357968710121042899999899818--93202-667864221
Q gi|254780546|r  139 SQRDYAE--KG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN--ISWCE-DPSNTDDRF  199 (423)
Q Consensus       139 l~r~sg~--~g-~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~--i~wve-DpSN~d~~f  199 (423)
T Consensus       153 L~~~~D~~KDQSYFL~~l~~~~~~----~~~FPlG~L~K~~vR~iA~~~~PfL~ta~tkKDSqgICF  215 (394)
T TIGR00420       153 LLRALDKNKDQSYFLYHLSQEQLA----KLLFPLGELLKPEVRQIAKNAGPFLSTAETKKDSQGICF  215 (394)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHH----HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             430467888611737640189888----750530103677899999864863234456886445021