HHsearch alignment for GI: 254780546 and conserved domain: TIGR00420
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=98.91 E-value=6.3e-09 Score=82.15 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=116.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-----CCC-------------CCCCHHHHHHHHHHHHHHCC
Q ss_conf 839999669424899999999999864899729999996-----677-------------98784689999999998718
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHC-------------LRETAKDEVRYVSDVCSRLR 81 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v-----dHg-------------lr~~s~~e~~~v~~~~~~lg 81 (423)
T Consensus 1 ~kv~VglSGGVDSSVsA~lL~~q-------g~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LG 73 (394)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-------GYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLG 73 (394)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 94899806854789999999714-------96589998776512466664431656246778836887999999998559
Q ss_pred CCEEEEEEE-----------------CCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHH-HHHHHHH--
Q ss_conf 988999975-----------------047877803788854555543200123---44201234566656-6899998--
Q gi|254780546|r 82 IAHSVVSWK-----------------NSKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQ-LETVYMR-- 138 (423)
Q Consensus 82 i~~~~~~~~-----------------~~~~~~~~~~~ar~~r~~~~~~~~~~~---~~~~l~~ah~~dD~-~Et~l~r-- 138 (423)
T Consensus 74 i~l~~~nf~~~Y~~~Vf~~~i~~y~~G~TPnPDi~CN-~~iKFG~~~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~ 152 (394)
T TIGR00420 74 IPLEKVNFQKEYWNKVFEPFIQEYKEGLTPNPDILCN-KLIKFGLLLEYAKQLLGTGNDKIATGHYARIAQEIENKSLFE 152 (394)
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHH
T ss_conf 8189855078878888899999873677778620047-120037899999985289954344244765443421310144
Q ss_pred HHCCCCC--CC-CCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC--CCCCC-CCCCCCCCC
Q ss_conf 6236544--43-32235764100357968710121042899999899818--93202-667864221
Q gi|254780546|r 139 SQRDYAE--KG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN--ISWCE-DPSNTDDRF 199 (423)
Q Consensus 139 l~r~sg~--~g-~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~--i~wve-DpSN~d~~f 199 (423)
T Consensus 153 L~~~~D~~KDQSYFL~~l~~~~~~----~~~FPlG~L~K~~vR~iA~~~~PfL~ta~tkKDSqgICF 215 (394)
T TIGR00420 153 LLRALDKNKDQSYFLYHLSQEQLA----KLLFPLGELLKPEVRQIAKNAGPFLSTAETKKDSQGICF 215 (394)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHH----HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 430467888611737640189888----750530103677899999864863234456886445021