HHsearch alignment for GI: 254780546 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.50 E-value=0.00027 Score=49.38 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=65.0
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 52799839999669424899999999999864899729999996677987-84689999999998718988999975047
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~~e~~~v~~~~~~lgi~~~~~~~~~~~ 93 (423)
T Consensus 256 rl~sDvpvg~~LSGGlDSS~i~a~~~~~~----~~--~i~tfs~~f~~~~~~~~dE~~~a~~va~~~~~~h~~~~~~~~~ 329 (589)
T TIGR03104 256 RLVADVPVGVLLSGGLDSSLIVGLLAEAG----VD--GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHR 329 (589)
T ss_pred HHHCCCCCCEECCCCCCHHHHHHHHHHHC----CC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 97446763000178754389999999956----99--9852788724688776667999999999738785799957178
Q ss_pred --------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf --------------8778037888545555432001234420123456665
Q gi|254780546|r 94 --------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 94 --------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
T Consensus 330 ~~~~l~~~~~~~deP~~~~~~---~~~~-~l~~~~~~-~~kV~LsG~GaDE 375 (589)
T TIGR03104 330 VLPALPEAVAAMSEPMVSHDC---VAFY-LLSEEVSK-HVKVVQSGQGADE 375 (589)
T ss_pred HHHHHHHHHHCCCCCCCCCHH---HHHH-HHHHHHCC-CCEEEEEEECCCC
T ss_conf 999889988526898768306---8899-99987328-8369995203332