HHsearch alignment for GI: 254780546 and conserved domain: cd01995
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.99 E-value=5.5e-09 Score=82.58 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=94.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
Q ss_conf 39999669424899999999999864899729999996677987846899999999987189889999750478778037
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA 100 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~ 100 (423)
T Consensus 1 kavvllSGGlDSt~~l~~~~~----~---g~~v~~l~~dYGQr~--~~E~~~a~~i~~~l~~~~~-----V--P~RN~if 64 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----E---GYEVHALSFDYGQRH--AKEEEAAKLIAEKLGPSTY-----V--PARNLIF 64 (169)
T ss_pred CEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEEECCCCH--HHHHHHHHHHHHHHCCCCE-----E--CCCHHHH
T ss_conf 989990787889999999998----4---996999997569854--9999999999999689946-----5--2838999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCH
Q ss_conf 8885455554320012344201234566656------6899998623654443322357641003579687101210428
Q gi|254780546|r 101 AAREARYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 (423)
Q Consensus 101 ~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r 174 (423)
T Consensus 65 ------ls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~------------~~~~~~v~i~aP~~~~~K 126 (169)
T cd01995 65 ------LSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALN------------LGTENGIKIHAPLIDLSK 126 (169)
T ss_pred ------HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH------------HCCCCCCEEEECCCCCCH
T ss_conf ------99999999982999689998247756899986999999999998------------308798589843335989
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999989981893202
Q gi|254780546|r 175 EDIRSFLLQRNISWCE 190 (423)
Q Consensus 175 ~~l~~~~~~~~i~wve 190 (423)
T Consensus 127 ~eiv~~g~~lgv~~~~ 142 (169)
T cd01995 127 AEIVRLGGELGVPLEL 142 (169)
T ss_pred HHHHHHHHHCCCCHHH
T ss_conf 9999999884997998