Query         gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 423
No_of_seqs    202 out of 4812
Neff          8.1 
Searched_HMMs 39220
Date          Mon May 30 01:01:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780546.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10660 tilS tRNA(Ile)-lysidi 100.0       0       0  466.0  31.1  391   14-415     8-415 (433)
  2 TIGR02432 lysidine_TilS_N tRNA 100.0       0       0  405.0  16.4  188   21-210     1-204 (204)
  3 cd01992 PP-ATPase N-terminal d 100.0       0       0  361.0  18.0  184   21-210     1-185 (185)
  4 pfam01171 ATP_bind_3 PP-loop f 100.0       0       0  359.4  16.7  181   21-207     1-182 (182)
  5 cd01993 Alpha_ANH_like_II This 100.0 1.7E-40 4.2E-45  305.4  17.1  175   21-198     1-184 (185)
  6 COG0037 MesJ tRNA(Ile)-lysidin 100.0 2.2E-39 5.5E-44  297.6  20.7  190   19-215    21-215 (298)
  7 PRK10696 C32 tRNA thiolase; Pr 100.0 3.4E-32 8.7E-37  246.7  19.6  194    7-212    28-232 (311)
  8 cd01990 Alpha_ANH_like_I This   99.7 2.4E-16 6.2E-21  134.6  10.1  149   22-197     1-157 (202)
  9 COG1606 ATP-utilizing enzymes   99.7 2.5E-15 6.4E-20  127.4  12.6  167    1-197     2-175 (269)
 10 KOG2840 consensus               99.6 2.7E-14 6.8E-19  120.2   9.5  201   14-215    46-260 (347)
 11 PRK00143 trmU tRNA (5-methylam  99.5 2.4E-14   6E-19  120.5   8.0  172   17-200     2-199 (355)
 12 cd01998 tRNA_Me_trans tRNA met  99.5 8.9E-14 2.3E-18  116.4   6.9  168   21-200     1-195 (349)
 13 pfam03054 tRNA_Me_trans tRNA m  99.5 1.7E-13 4.4E-18  114.5   7.1  168   21-200     2-197 (354)
 14 TIGR00268 TIGR00268 conserved   99.4 2.4E-12 6.2E-17  106.3  11.7  164    6-197     2-176 (263)
 15 COG0482 TrmU Predicted tRNA(5-  99.4 2.6E-12 6.6E-17  106.1   9.5  172   18-200     2-197 (356)
 16 PRK00919 GMP synthase subunit   99.2 1.6E-10 4.1E-15   93.4  11.8  164    4-187     2-177 (306)
 17 TIGR00884 guaA_Cterm GMP synth  99.2 8.4E-11 2.1E-15   95.4   9.7  168    8-188     6-188 (319)
 18 cd01712 ThiI ThiI is required   99.2 1.5E-10 3.8E-15   93.7  10.7  144   21-186     1-156 (177)
 19 cd01713 PAPS_reductase This do  99.2 6.1E-10 1.5E-14   89.3  10.9  149   21-189     1-162 (173)
 20 PRK00074 guaA GMP synthase; Re  99.0 3.1E-09   8E-14   84.3  10.6  156   14-187   211-382 (513)
 21 pfam01507 PAPS_reduct Phosphoa  99.0 2.4E-09 6.2E-14   85.1  10.1  147   21-190     1-157 (174)
 22 cd01997 GMP_synthase_C The C-t  99.0 2.4E-09 6.2E-14   85.1   9.6  152   21-187     1-165 (295)
 23 KOG2805 consensus               99.0 8.5E-10 2.2E-14   88.3   7.2  173   16-200     2-205 (377)
 24 pfam02568 ThiI Thiamine biosyn  99.0 3.6E-09 9.3E-14   83.8  10.1  151   19-191     3-166 (197)
 25 COG0519 GuaA GMP synthase, PP-  99.0 5.2E-09 1.3E-13   82.8  10.7  161   14-188    16-185 (315)
 26 COG0603 Predicted PP-loop supe  99.0 6.1E-09 1.5E-13   82.3  10.9  150   19-189     2-181 (222)
 27 cd01995 ExsB ExsB is a transcr  99.0 5.5E-09 1.4E-13   82.6  10.2  136   21-190     1-142 (169)
 28 PRK11106 queuosine biosynthesi  99.0 4.9E-09 1.3E-13   82.9   9.5  148   20-188     2-182 (231)
 29 pfam06508 ExsB ExsB. This fami  98.9   3E-09 7.6E-14   84.5   7.5  102   21-131     1-125 (137)
 30 TIGR00420 trmU tRNA (5-methyla  98.9 6.3E-09 1.6E-13   82.2   8.0  168   20-199     1-215 (394)
 31 TIGR00364 TIGR00364 exsB prote  98.8 2.6E-08 6.7E-13   77.8   9.1  151   23-185     2-189 (227)
 32 PRK08349 hypothetical protein;  98.8 1.6E-07   4E-12   72.3  11.4  142   21-186     2-158 (198)
 33 COG0175 CysH 3'-phosphoadenosi  98.8 1.6E-07   4E-12   72.3  10.7  157    5-189    27-197 (261)
 34 PRK13820 argininosuccinate syn  98.7 3.1E-07 7.9E-12   70.2  11.6  143   18-189     2-165 (395)
 35 PRK00509 argininosuccinate syn  98.7 4.9E-07 1.3E-11   68.8  12.5  141   19-189     2-167 (398)
 36 cd01986 Alpha_ANH_like Adenine  98.7 5.8E-08 1.5E-12   75.4   7.0   83   22-140     1-83  (103)
 37 PRK05370 argininosuccinate syn  98.7 4.7E-07 1.2E-11   68.9  11.6  152   11-189     3-184 (447)
 38 PRK05253 sulfate adenylyltrans  98.7 4.8E-07 1.2E-11   68.9  11.3  169   16-190    23-206 (300)
 39 PRK08576 hypothetical protein;  98.7 2.2E-07 5.5E-12   71.3   9.1  170    8-206   225-399 (439)
 40 pfam02540 NAD_synthase NAD syn  98.6 1.5E-06 3.8E-11   65.3  12.5  150    7-187     3-169 (243)
 41 TIGR03573 WbuX N-acetyl sugar   98.6 7.3E-07 1.9E-11   67.6  10.0  165   20-193    60-259 (343)
 42 PRK04527 argininosuccinate syn  98.6   1E-06 2.5E-11   66.6  10.2  147   19-193     3-174 (397)
 43 PRK02090 phosphoadenosine phos  98.6 4.4E-06 1.1E-10   62.1  13.5  158    2-189    26-196 (243)
 44 KOG2594 consensus               98.5 2.4E-07 6.2E-12   70.9   6.5  172   12-188    55-265 (396)
 45 pfam00764 Arginosuc_synth Argi  98.5 1.8E-06 4.5E-11   64.9   9.9  139   23-189     1-161 (389)
 46 cd00553 NAD_synthase NAD+ synt  98.5 3.1E-06 7.8E-11   63.2  11.1  140   17-187    21-178 (248)
 47 PRK13794 hypothetical protein;  98.5 1.3E-06 3.3E-11   65.8   8.8  169   11-206   235-413 (473)
 48 PRK01565 thiamine biosynthesis  98.5 5.3E-06 1.4E-10   61.5  11.7  146   18-186   175-332 (399)
 49 PRK12563 sulfate adenylyltrans  98.4 2.8E-06 7.2E-11   63.4   9.7  170   16-190    34-217 (312)
 50 PRK13795 hypothetical protein;  98.4 2.4E-06 6.2E-11   63.9   9.0  161   11-206   235-413 (630)
 51 KOG1622 consensus               98.4 1.2E-06 3.1E-11   65.9   7.4  163   14-190   225-408 (552)
 52 cd01999 Argininosuccinate_Synt  98.4   8E-06   2E-10   60.2  11.2  141   22-189     1-164 (385)
 53 PRK08557 hypothetical protein;  98.4 4.3E-06 1.1E-10   62.1   9.6  151   19-206   183-351 (420)
 54 PRK13980 NAD synthetase; Provi  98.4 1.4E-05 3.6E-10   58.5  11.9  150    7-187    13-178 (264)
 55 cd01991 Asn_Synthase_B_C The C  98.4 2.4E-06   6E-11   64.0   7.9  108   15-130    11-128 (269)
 56 COG0137 ArgG Argininosuccinate  98.3 2.4E-05 6.1E-10   56.9  12.7  149   18-191     3-171 (403)
 57 cd01996 Alpha_ANH_like_III Thi  98.3 4.3E-06 1.1E-10   62.1   8.9   62   21-91      3-64  (154)
 58 PRK00876 nadE NAD synthetase;   98.3 1.9E-05 4.9E-10   57.5  11.7   77    7-90     17-97  (325)
 59 pfam00733 Asn_synthase Asparag  98.3 1.8E-05 4.7E-10   57.7  11.2  165    9-211     6-185 (195)
 60 PRK06850 hypothetical protein;  98.3 3.1E-05 7.9E-10   56.0  12.3  182    3-191     3-215 (488)
 61 COG2117 Predicted subunit of t  98.3 3.6E-06 9.1E-11   62.7   7.3  160   21-211     2-175 (198)
 62 TIGR03183 DNA_S_dndC putative   98.3 2.5E-05 6.5E-10   56.7  11.6  170   15-191     9-207 (447)
 63 TIGR00032 argG argininosuccina  98.3 4.3E-05 1.1E-09   55.1  12.7  160   21-208     1-193 (420)
 64 PRK01269 thiamine biosynthesis  98.2 2.7E-05 6.8E-10   56.5  11.3  146   18-186   176-333 (483)
 65 COG0301 ThiI Thiamine biosynth  98.1 6.3E-05 1.6E-09   53.9  11.4  145   18-186   174-332 (383)
 66 COG0171 NadE NAD synthase [Coe  98.1 0.00012 3.1E-09   51.9  12.0  156    8-187    11-185 (268)
 67 COG3969 Predicted phosphoadeno  98.1 1.4E-05 3.5E-10   58.6   6.9  168   15-188    23-232 (407)
 68 PTZ00323 NAD+ synthase; Provis  98.0 0.00025 6.4E-09   49.6  11.7   84    3-89     24-113 (294)
 69 cd01984 AANH_like Adenine nucl  98.0 7.7E-06   2E-10   60.3   3.7   69   22-139     1-69  (86)
 70 PRK02628 nadE NAD synthetase;   97.9  0.0001 2.6E-09   52.4   9.2   71   17-90    360-431 (678)
 71 PRK13981 NAD synthetase; Provi  97.9 0.00017 4.2E-09   50.9   9.1  139   17-186   279-435 (543)
 72 TIGR00342 TIGR00342 thiamine b  97.8 0.00017 4.3E-09   50.8   9.0  142   20-185   187-344 (391)
 73 COG1365 Predicted ATPase (PP-l  97.8 0.00011 2.9E-09   52.1   7.1  148   20-207    61-216 (255)
 74 cd01994 Alpha_ANH_like_IV This  97.7  0.0016   4E-08   44.0  12.6  147   21-199     1-154 (194)
 75 PRK08384 thiamine biosynthesis  97.7 0.00094 2.4E-08   45.6  10.5  130   18-185   178-307 (310)
 76 TIGR03108 eps_aminotran_1 exos  97.7  0.0002 5.2E-09   50.3   7.0   70   15-92    254-323 (628)
 77 COG0367 AsnB Asparagine syntha  97.6 0.00076 1.9E-08   46.2   8.8  106   15-130   226-344 (542)
 78 PRK09431 asnB asparagine synth  97.6 0.00037 9.3E-09   48.5   7.1  111   15-130   223-353 (555)
 79 TIGR03104 trio_amidotrans aspa  97.5 0.00027 6.9E-09   49.4   5.9  105   15-130   256-375 (589)
 80 PRK00768 nadE NAD synthetase;   97.4   0.014 3.5E-07   37.3  14.1  142   17-187    38-202 (274)
 81 TIGR01536 asn_synth_AEB aspara  97.4 0.00073 1.9E-08   46.4   6.8  116   15-130   307-444 (646)
 82 pfam01902 ATP_bind_4 ATP-bindi  97.3  0.0083 2.1E-07   38.9  11.7   63   21-89      2-66  (219)
 83 PTZ00077 asparagine synthetase  97.3  0.0021 5.4E-08   43.1   8.2   74   15-92    233-341 (610)
 84 pfam09179 TilS TilS substrate   97.1  0.0036 9.1E-08   41.5   8.1   63  254-318     4-69  (69)
 85 TIGR02039 CysD sulfate adenyly  97.1  0.0025 6.3E-08   42.6   7.2   68   20-92     20-87  (295)
 86 KOG1706 consensus               97.0  0.0099 2.5E-07   38.3   9.3  162   17-199     3-206 (412)
 87 cd01987 USP_OKCHK USP domain i  96.9  0.0038 9.8E-08   41.2   6.9  105   21-146     1-109 (124)
 88 TIGR00552 nadE NAD+ synthetase  96.9   0.017 4.4E-07   36.7  10.0  156    4-186     4-188 (286)
 89 COG2102 Predicted ATPases of P  96.6   0.067 1.7E-06   32.5  11.2   64   21-91      2-69  (223)
 90 KOG0573 consensus               95.6   0.087 2.2E-06   31.7   7.6   38   20-61    251-288 (520)
 91 KOG0571 consensus               95.2    0.15 3.8E-06   30.0   7.9   75   14-92    220-295 (543)
 92 cd00293 USP_Like Usp: Universa  95.0    0.31 7.8E-06   27.8   9.2   95   21-131     1-106 (130)
 93 PRK10490 sensor protein KdpD;   94.4    0.41   1E-05   26.9   8.5   94   18-128   249-346 (895)
 94 TIGR00289 TIGR00289 conserved   93.2    0.32   8E-06   27.7   6.0   67   21-94      2-72  (227)
 95 cd01989 STK_N The N-terminal d  93.2    0.68 1.7E-05   25.4   7.8   95   21-130     1-115 (146)
 96 PRK13011 formyltetrahydrofolat  93.0    0.51 1.3E-05   26.2   6.8   26  173-198   126-151 (287)
 97 PRK13010 purU formyltetrahydro  92.7     0.8   2E-05   24.9   8.2   26  173-198   129-154 (289)
 98 PRK09982 universal stress prot  92.3    0.88 2.3E-05   24.5   9.0  101   20-140     4-120 (142)
 99 COG2205 KdpD Osmosensitive K+   91.1     1.2   3E-05   23.6   8.8   94   19-129   248-345 (890)
100 PRK10116 universal stress prot  90.7     1.3 3.3E-05   23.4   8.3   96   20-130     4-114 (142)
101 TIGR00434 cysH phosophoadenyly  90.5     1.3 3.3E-05   23.3   8.5  144   16-189    10-183 (226)
102 PRK06027 purU formyltetrahydro  89.1     1.7 4.3E-05   22.6   7.1   24  174-197   125-148 (285)
103 pfam10288 DUF2392 Protein of u  88.3    0.85 2.2E-05   24.7   4.3   35  160-194    28-62  (104)
104 pfam02677 DUF208 Uncharacteriz  87.5     2.1 5.4E-05   21.9   7.4   60   24-90      3-64  (176)
105 LOAD_USPA consensus             84.5     2.9 7.4E-05   20.9   9.4   94   20-129     1-108 (135)
106 cd01988 Na_H_Antiporter_C The   84.4     2.9 7.5E-05   20.8   8.0   95   21-130     1-106 (132)
107 cd01399 GlcN6P_deaminase GlcN6  83.6     3.2 8.1E-05   20.6   7.8   77    9-85      8-88  (232)
108 TIGR00655 PurU formyltetrahydr  80.9       4  0.0001   19.9   7.7   88   20-126    93-182 (294)
109 cd05565 PTS_IIB_lactose PTS_II  80.3     4.1 0.00011   19.8   7.4   68   21-89      2-80  (99)
110 COG0788 PurU Formyltetrahydrof  80.0     4.2 0.00011   19.7   7.3   23  175-197   128-150 (287)
111 PRK09590 celB cellobiose phosp  74.4       6 0.00015   18.7   7.2   75   20-95      2-89  (104)
112 TIGR01949 AroFGH_arch predicte  73.8     6.2 0.00016   18.6   4.3   75   52-129   105-181 (259)
113 cd05564 PTS_IIB_chitobiose_lic  73.0     6.4 0.00016   18.4   6.9   69   21-90      1-80  (96)
114 KOG0189 consensus               72.7     6.5 0.00017   18.4   7.1  159    3-189    32-205 (261)
115 COG1636 Uncharacterized protei  71.4       7 0.00018   18.2   9.2   65   18-89      2-68  (204)
116 PRK06696 uridine kinase; Valid  70.6     7.3 0.00018   18.1   7.0   58    6-66     11-70  (227)
117 PRK10717 cysteine synthase A;   68.7     7.6 0.00019   17.9   3.8   57   16-87     60-116 (334)
118 cd01524 RHOD_Pyr_redox Member   68.6     7.9  0.0002   17.8   5.0   51    5-64     37-87  (90)
119 pfam05889 SLA_LP_auto_ag Solub  65.5     8.7 0.00022   17.5   3.6   18  173-190   173-190 (389)
120 PRK00443 nagB glucosamine-6-ph  65.4     9.1 0.00023   17.4   7.2   90   19-112    32-126 (264)
121 TIGR00424 APS_reduc 5'-adenyly  62.0      10 0.00027   17.0   6.5  161    3-188   104-282 (469)
122 KOG3425 consensus               60.8      11 0.00028   16.8   7.2   83    2-90      8-103 (128)
123 pfam03599 CdhD CO dehydrogenas  60.3      11 0.00028   16.8   7.2  133   11-146    21-169 (384)
124 TIGR00639 PurN phosphoribosylg  60.1      11 0.00029   16.7   7.9   94   21-125     2-101 (215)
125 TIGR00873 gnd 6-phosphoglucona  59.7     6.8 0.00017   18.3   2.2  154    2-185    47-224 (480)
126 PRK07667 uridine kinase; Provi  59.6      11 0.00029   16.7   6.0   41   17-60     10-52  (190)
127 pfam01861 DUF43 Protein of unk  59.6      11 0.00029   16.7   6.3   79    2-96     24-106 (243)
128 KOG1325 consensus               58.6      11 0.00027   16.9   3.0   30    7-36     24-65  (571)
129 cd00946 FBP_aldolase_IIA Class  58.4      12 0.00031   16.5  11.5  138    7-149    27-205 (345)
130 TIGR02057 PAPS_reductase phosp  57.3      12 0.00032   16.4  13.1  175    5-189    14-197 (239)
131 PTZ00142 6-phosphogluconate de  56.3      13 0.00033   16.3   6.5   79    3-91     55-133 (474)
132 TIGR03531 selenium_SpcS O-phos  56.0      13 0.00033   16.3   5.2   23  168-190   218-240 (444)
133 PRK05647 purN phosphoribosylgl  55.6      13 0.00034   16.2   8.1   86   20-125     2-87  (200)
134 COG4586 ABC-type uncharacteriz  52.8      15 0.00037   15.9   3.5   26  244-269   172-197 (325)
135 PRK09589 celA 6-phospho-beta-g  52.3      12 0.00031   16.5   2.5   58   74-131    73-134 (479)
136 KOG2303 consensus               52.1      15 0.00038   15.8   3.3   26   17-42    347-372 (706)
137 TIGR03356 BGL beta-galactosida  51.8      11 0.00029   16.7   2.2   58   74-131    60-120 (427)
138 PRK09593 arb 6-phospho-beta-gl  51.2      13 0.00034   16.2   2.5   57   74-130    79-139 (478)
139 TIGR02407 ectoine_ectB diamino  51.2      16  0.0004   15.7   4.2   23   65-87    212-234 (413)
140 PRK13511 6-phospho-beta-galact  51.0      13 0.00034   16.2   2.5   57   74-130    60-119 (470)
141 cd07025 Peptidase_S66 LD-Carbo  50.4      16 0.00041   15.7   4.3   24   23-46      3-26  (282)
142 PRK09852 cryptic 6-phospho-bet  47.4      17 0.00043   15.5   2.6   58   74-131    77-138 (474)
143 TIGR01859 fruc_bis_ald_ fructo  47.4      18 0.00045   15.3   4.1  153   17-191    38-232 (339)
144 pfam00232 Glyco_hydro_1 Glycos  47.0      15 0.00038   15.9   2.3   57   75-131    65-124 (454)
145 COG0362 Gnd 6-phosphogluconate  46.6      17 0.00042   15.5   2.4   77    3-91     52-130 (473)
146 COG0794 GutQ Predicted sugar p  46.6      18 0.00046   15.3   4.0   22   67-88     99-120 (202)
147 KOG2644 consensus               46.6      18 0.00046   15.3   5.2   22  168-189   208-229 (282)
148 pfam01182 Glucosamine_iso Gluc  46.5      18 0.00046   15.3   8.5  102    9-113     7-113 (236)
149 KOG2316 consensus               45.2      19 0.00048   15.1  12.3   63   21-93      2-76  (277)
150 pfam08497 Radical_SAM_N Radica  45.2      16 0.00042   15.6   2.2   20   70-89     35-54  (298)
151 pfam10309 DUF2414 Protein of u  44.7      16 0.00041   15.6   2.1   34  166-200    10-50  (62)
152 cd01568 QPRTase_NadC Quinolina  43.7      20 0.00051   15.0   3.3   14   73-86     47-61  (269)
153 PRK09287 6-phosphogluconate de  43.7      20 0.00051   15.0   7.1   79    3-91     39-117 (459)
154 PRK00162 glpE thiosulfate sulf  43.0      20 0.00052   14.9   5.1   50    5-62     44-93  (104)
155 TIGR00853 pts-lac PTS system,   41.8      21 0.00054   14.8   6.9   71   15-88     42-125 (142)
156 COG0299 PurN Folate-dependent   41.5      22 0.00055   14.7   7.4   85   21-126     2-87  (200)
157 cd03115 SRP The signal recogni  40.3      22 0.00057   14.6   6.7   59   22-88      4-62  (173)
158 PRK11498 bcsA cellulose syntha  39.1      23  0.0006   14.5   3.1   51   47-104   300-350 (858)
159 PRK13937 phosphoheptose isomer  38.1      24 0.00062   14.4   5.6   51    9-60     32-84  (192)
160 TIGR00693 thiE thiamine-phosph  38.0      24 0.00062   14.4   2.9   23   66-88     51-73  (210)
161 smart00022 PLAc Cytoplasmic ph  37.9      24 0.00062   14.4   3.4   25    7-31     51-87  (549)
162 TIGR01198 pgl 6-phosphoglucono  37.8      24 0.00062   14.3   5.3  105    7-115    14-127 (251)
163 pfam08727 P3A Poliovirus 3A pr  37.4      22 0.00057   14.6   1.9   30  169-202    24-53  (57)
164 cd07203 cPLA2_Fungal_PLB Funga  36.9      25 0.00064   14.3   3.4   14   20-33     63-76  (552)
165 PRK10162 acetyl esterase; Prov  36.4      26 0.00065   14.2   6.6   14  171-184   215-228 (319)
166 PRK13832 plasmid partitioning   35.8      20  0.0005   15.0   1.4   24  179-202   214-240 (518)
167 pfam00448 SRP54 SRP54-type pro  35.7      26 0.00067   14.1   6.3   60   22-89      5-64  (196)
168 pfam01268 FTHFS Formate--tetra  35.1      27 0.00068   14.1   6.1   19  127-145   302-320 (555)
169 PRK04165 acetyl-CoA decarbonyl  35.1      27 0.00068   14.1   7.6  131   13-146    85-227 (454)
170 TIGR01277 thiQ thiamine ABC tr  35.0      24 0.00061   14.4   1.8  115   15-133    20-194 (213)
171 pfam01188 MR_MLE Mandelate rac  35.0      26 0.00066   14.2   1.9   21  177-197    64-84  (98)
172 pfam00926 DHBP_synthase 3,4-di  34.9      27 0.00069   14.0   7.5  105   74-190    57-185 (193)
173 PRK05773 3,4-dihydroxy-2-butan  34.8      27 0.00069   14.0   3.9   20  171-190   189-208 (218)
174 pfam00582 Usp Universal stress  34.6      27  0.0007   14.0   9.4   95   20-130     3-114 (140)
175 COG0363 NagB 6-phosphogluconol  34.5      27  0.0007   14.0   5.3   66   19-85     31-99  (238)
176 cd02651 nuc_hydro_IU_UC_XIUA n  34.4      28  0.0007   14.0   6.0   52   28-86      9-62  (302)
177 cd03557 L-arabinose_isomerase   34.3      28  0.0007   14.0   3.6   42  166-207   209-250 (484)
178 PRK00414 gmhA phosphoheptose i  33.8      28 0.00072   13.9   6.7   50    7-57     32-83  (192)
179 cd00147 cPLA2_like Cytosolic p  33.6      28 0.00072   13.9   3.3   25    7-31     24-53  (438)
180 PTZ00249 variable surface prot  33.6      25 0.00064   14.2   1.7   14  186-199   147-160 (516)
181 pfam10829 DUF2554 Protein of u  33.5      28 0.00072   13.9   3.0   24   52-75     29-53  (76)
182 PRK09762 galactosamine-6-phosp  33.5      28 0.00072   13.9   6.3   74   12-85     20-97  (236)
183 PRK12358 putative 6-phosphoglu  33.4      28 0.00073   13.9   7.3   68   10-79     18-85  (239)
184 PTZ00285 glucosamine-6-phospha  33.1      29 0.00073   13.8   8.3   91   17-111    30-125 (253)
185 cd01582 Homoaconitase Homoacon  33.1      29 0.00073   13.8   4.3   34   52-85     27-63  (363)
186 TIGR00269 TIGR00269 conserved   32.8      11 0.00029   16.7  -0.2   50  165-214     3-52  (106)
187 cd00958 DhnA Class I fructose-  32.7      29 0.00074   13.8   5.8   40   51-90     90-131 (235)
188 pfam01890 CbiG_C Cobalamin syn  31.8      30 0.00077   13.7   4.5   67   21-93      3-70  (121)
189 PRK08813 threonine dehydratase  31.2      31 0.00079   13.6   3.2   23   20-42     81-103 (349)
190 PRK09197 fructose-bisphosphate  30.8      31  0.0008   13.6   7.3   71   17-92     43-137 (349)
191 PRK10264 hydrogenase 1 maturat  30.6      32  0.0008   13.6   3.1  155    8-211    25-191 (195)
192 PRK00955 hypothetical protein;  30.4      32 0.00081   13.5   2.2  108   18-142    64-180 (599)
193 cd03326 MR_like_1 Mandelate ra  30.0      32 0.00082   13.5   2.4   34  176-209   223-256 (385)
194 TIGR03030 CelA cellulose synth  30.0      32 0.00082   13.5   2.5   81   22-104   135-226 (713)
195 PRK05634 nucleosidase; Provisi  29.8      33 0.00083   13.5   3.4   27  169-195   132-163 (188)
196 pfam03205 MobB Molybdopterin g  29.7      33 0.00083   13.5   4.6   37   24-62      3-41  (122)
197 PRK07008 acyl-CoA synthetase;   29.4      33 0.00084   13.4   3.3   47    9-64     52-100 (539)
198 TIGR01735 FGAM_synt phosphorib  29.4      12  0.0003   16.6  -0.6  127   55-209    87-213 (1401)
199 cd03324 rTSbeta_L-fuconate_deh  29.3      33 0.00085   13.4   2.6   33  176-208   258-290 (415)
200 cd03315 MLE_like Muconate lact  28.4      34 0.00087   13.3   1.9   32  177-208   148-179 (265)
201 TIGR02793 nikR nickel-responsi  28.4      30 0.00076   13.8   1.3   21  274-294    18-38  (130)
202 pfam07942 N2227 N2227-like pro  28.1      35 0.00089   13.3   4.0   74  119-203   171-249 (268)
203 PRK08385 nicotinate-nucleotide  27.8      35 0.00089   13.2   2.7   21   70-90     47-67  (279)
204 COG1440 CelA Phosphotransferas  27.4      36 0.00091   13.2   6.7   69   20-89      2-81  (102)
205 COG0108 RibB 3,4-dihydroxy-2-b  27.3      36 0.00091   13.2   6.8  105   74-190    62-190 (203)
206 PRK13520 L-tyrosine decarboxyl  27.2      36 0.00091   13.2   7.4   72    7-91     67-139 (375)
207 pfam01116 F_bP_aldolase Fructo  27.1      36 0.00092   13.2   7.9   98    7-117    27-131 (283)
208 PRK12678 transcription termina  27.1      24 0.00061   14.4   0.6   47   22-82     15-61  (667)
209 cd06381 PBP1_iGluR_delta_like   26.9      36 0.00092   13.1   5.3   72    7-90     15-95  (363)
210 cd03298 ABC_ThiQ_thiamine_tran  26.6      37 0.00094   13.1   2.0   24   16-40     21-45  (211)
211 KOG1907 consensus               26.5      23 0.00059   14.5   0.5   17   21-37    784-800 (1320)
212 COG3111 Periplasmic protein wi  26.4      37 0.00095   13.1   3.2   61  277-341    36-96  (128)
213 pfam01156 IU_nuc_hydro Inosine  26.1      38 0.00096   13.0   6.0   54   21-82      2-56  (303)
214 cd00477 FTHFS Formyltetrahydro  26.0      38 0.00096   13.0   5.6   21  125-145   284-304 (524)
215 cd06368 PBP1_iGluR_non_NMDA_li  25.9      38 0.00096   13.0   5.7   75    7-92     15-97  (324)
216 COG0157 NadC Nicotinate-nucleo  25.7      38 0.00097   13.0   3.3   12   70-81     50-61  (280)
217 cd00453 FTBP_aldolase_II Fruct  25.3      39 0.00099   12.9   7.5  138    7-149    24-203 (340)
218 PRK07313 phosphopantothenoylcy  25.3      39 0.00099   12.9   4.7   35   19-57      2-36  (180)
219 pfam02441 Flavoprotein Flavopr  24.9      39   0.001   12.9   4.9   33   20-56      1-33  (118)
220 pfam02016 Peptidase_S66 LD-car  24.9      39   0.001   12.9   4.3   60   23-86      3-66  (281)
221 CHL00202 argB acetylglutamate   24.8      40   0.001   12.9   7.2  158    2-211     1-165 (284)
222 COG1377 FlhB Flagellar biosynt  24.8      40   0.001   12.9   1.6   15  385-399   308-324 (363)
223 cd03329 MR_like_4 Mandelate ra  24.1      41   0.001   12.8   1.5   31  179-209   210-240 (368)
224 COG0452 Dfp Phosphopantothenoy  24.1      41   0.001   12.8   4.5   35   20-58      5-39  (392)
225 TIGR01136 cysKM cysteine synth  24.0      41   0.001   12.8   5.1   17  298-314   178-194 (315)
226 TIGR01162 purE phosphoribosyla  23.8      41  0.0011   12.7   4.3   51   64-123     7-59  (159)
227 TIGR02322 phosphon_PhnN phosph  23.8      41  0.0011   12.7   3.4  131   22-162     5-166 (183)
228 COG1751 Uncharacterized conser  23.4      42  0.0011   12.7   5.4   60   19-86     28-88  (186)
229 TIGR01121 D_amino_aminoT D-ami  23.3      42  0.0011   12.7   2.0   27  169-195   202-228 (278)
230 TIGR03468 HpnG hopanoid-associ  23.3      42  0.0011   12.7   4.8   28  171-198   131-163 (212)
231 PRK06633 acetyl-CoA acetyltran  23.3      37 0.00093   13.1   1.0   31   51-83     78-108 (392)
232 TIGR01393 lepA GTP-binding pro  23.3      39 0.00099   12.9   1.1   87  300-390   192-297 (598)
233 PRK11706 TDP-4-oxo-6-deoxy-D-g  23.2      42  0.0011   12.7   1.6   25  174-198   135-159 (375)
234 PRK11175 universal stress prot  23.2      42  0.0011   12.7   8.8  145   19-198     3-167 (304)
235 PRK09409 insertion element IS2  23.1      43  0.0011   12.6   5.8   18  172-189   203-220 (301)
236 cd01561 CBS_like CBS_like: Thi  22.8      43  0.0011   12.6   3.2   55   18-87     51-105 (291)
237 cd04191 Glucan_BSP_ModH Glucan  22.6      43  0.0011   12.6   5.5   79   41-125    25-110 (254)
238 pfam00763 THF_DHG_CYH Tetrahyd  22.1      44  0.0011   12.5   4.8   40   50-91     29-68  (117)
239 PRK07261 topology modulation p  22.1      44  0.0011   12.5   5.5   53   22-78      4-57  (171)
240 pfam12268 DUF3612 Protein of u  22.0      45  0.0011   12.5   1.6   26  173-198   133-158 (178)
241 pfam10686 DUF2493 Protein of u  22.0      45  0.0011   12.5   7.2   63   21-92      3-68  (71)
242 cd01444 GlpE_ST GlpE sulfurtra  21.9      45  0.0011   12.5   4.9   35    6-40     43-77  (96)
243 pfam03848 TehB Tellurite resis  21.5      45  0.0012   12.4   8.1  144    5-185    18-163 (192)
244 PRK05702 flhB flagellar biosyn  21.5      46  0.0012   12.4   1.7   23  177-201   105-127 (352)
245 cd06391 PBP1_iGluR_delta_2 N-t  21.5      46  0.0012   12.4   5.1   74    6-91     14-96  (400)
246 COG3962 Acetolactate synthase   21.5      30 0.00076   13.7   0.3   26  171-196   243-268 (617)
247 PRK06115 dihydrolipoamide dehy  21.2      46  0.0012   12.4   6.6   16  175-190   219-234 (466)
248 PRK07116 flavodoxin; Provision  21.1      46  0.0012   12.4   5.0   21   73-93     18-38  (158)
249 cd01523 RHOD_Lact_B Member of   21.0      47  0.0012   12.4   5.9   46    8-62     50-95  (100)
250 TIGR02211 LolD_lipo_ex lipopro  21.0      47  0.0012   12.4   3.2  109   16-128    28-202 (221)
251 PRK09108 type III secretion sy  20.7      47  0.0012   12.3   1.7   24  176-201    99-122 (354)
252 COG1660 Predicted P-loop-conta  20.7      47  0.0012   12.3   5.2   15   22-36      5-19  (286)
253 TIGR03588 PseC UDP-4-keto-6-de  20.7      47  0.0012   12.3   1.7   25  174-198   137-161 (380)
254 cd07985 LPLAT_GPAT Lysophospho  20.3      48  0.0012   12.3   2.6   13  118-130    21-33  (235)
255 PRK12721 secretion system appa  20.3      48  0.0012   12.3   1.8   23  177-201    98-120 (349)
256 PRK13109 flhB flagellar biosyn  20.2      48  0.0012   12.3   1.7   21  179-201   109-129 (358)
257 cd00458 SugarP_isomerase Sugar  20.0      49  0.0012   12.2   6.0  101   10-115     9-113 (169)

No 1  
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00  E-value=0  Score=466.02  Aligned_cols=391  Identities=21%  Similarity=0.256  Sum_probs=272.5

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      ++|..+++|+||||||+|||||||+++.+..+.  ++++++|+|||||||++|++|++||+++|+++|||+++.+++...
T Consensus         8 ~~~~~~~~ilvavSGG~DS~~LL~~L~~l~~~~--~~~~l~~~HvnHgl~~~ad~~~~fv~~~c~~~~ip~~~~~~~v~~   85 (433)
T PRK10660          8 RQLLESRQILVAFSGGLDSTVLLHQLVQWRTQN--PGVTLRAIHIHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLAQ   85 (433)
T ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             646999989999728099999999999999866--898289999718979266999999999999759978999987279


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf             87780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r   94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR  173 (423)
Q Consensus        94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~  173 (423)
                      .+.++|++||.+||.++.+.+.+.  .+++||||+|||+||++||+.||+|+.|+  +||++.. ..+++.++||||.++
T Consensus        86 ~~~~~E~aAR~~RY~~f~~~~~~~--~~l~tAHh~dDQaETvLlrL~RGsG~~GL--~gm~~~r-~~~~~~liRPLL~~~  160 (433)
T PRK10660         86 EGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGL--SAMAEVS-PFAGTQLLRPLLART  160 (433)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC--CEEEECCCCCHHHHHHHHHHHCCCCCCCC--CCCCCCC-CCCCCEEECCCHHHH
T ss_conf             997699999999999999987438--87996245651999999998658996445--6775224-478970773744665


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC
Q ss_conf             899999899818932026678642210189997643453100---6677999999999979999999998840--04499
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLT--VHMRS  248 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~---l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~  248 (423)
                      |+||++||+++||+|+|||||.|++|+||++|+.+.|.+.+.   +.+...+++......+....+++...+.  ....+
T Consensus       161 r~eI~~Y~~~~~l~~~eD~SN~d~~y~RN~iR~~vlP~L~~~~P~~~~~l~r~a~l~~e~~~~l~~~~~~~~~~~~~~~~  240 (433)
T PRK10660        161 RGELEQWAQAHGLRWIEDESNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAEDLAHCQTPDG  240 (433)
T ss_pred             HHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999984998038999997611259999997899998780699999999999999999999999999998646267


Q ss_pred             EEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HCCCCCEEECCCEEEEEECCEEEEEECCCCC
Q ss_conf             7998477833755789899999999983589999889999999998---6699845610757999889989998453437
Q gi|254780546|r  249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANFLWITRAVRNL  325 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~~r~l~~~l~~~~g~~~~p~~~~l~~ll~~l---~~~~~~~~tl~g~~i~~~~~~l~i~RE~~~~  325 (423)
                      .. ....+..++...+.++++.|+...+  ..+|+...+.+++..+   ..+..+.+.+++..++++++.+|+.......
T Consensus       241 ~l-~~~~l~~l~~~~~~~llr~wl~~~~--~~~p~~~~l~~i~~~~~~~~~d~~~~l~~~~~~vr~y~~~l~~~~~~~~~  317 (433)
T PRK10660        241 TL-QIDPLLAMSDARRAAILRRWLAGQN--APMPSRDALQRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVAGQ  317 (433)
T ss_pred             CC-CHHHHHHCCHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCEEEEECCCCCC
T ss_conf             23-3376775799999999999999647--99985999999999998516688827998898999987889995256665


Q ss_pred             CCCCC----CCCCCEEECCCEEEECCCCCEEE-ECCCCCCCCCCCCCCC-CCCCHHHHHHCCHHHCCCEEECCCCCCCCH
Q ss_conf             75523----68982320784175127775035-2167544254201231-135546776271242797661230068881
Q gi|254780546|r  326 PTLIL----YPEETTVWDGRYQFQNLSDSLIQ-IGPQSYRKADVPSGIP-PIIAQRALSSMPSKEGGKPLLAPFSRFMTK  399 (423)
Q Consensus       326 ~~~~~----~~~~~~~wDgR~~i~~~~~~~~~-l~~~g~~~~~~~~~~~-~~~~~~~l~~lP~~~~g~~liaP~~r~~~~  399 (423)
                      ....+    ......+.+|.+.+....+.... ..+.....+.++...+ ....+.+.+.++.++.+.+ ||||.|..-|
T Consensus       318 ~~~~~~~~~~~~~l~lp~~~g~~~~~~~~~~~~~~~~~~l~iR~r~~Gd~~~~g~~gsKkLKk~f~d~k-IP~~~R~~iP  396 (433)
T PRK10660        318 SETIVPWPTWLQPLELPAGLGSVQLVAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELG-IPPWLRDTTP  396 (433)
T ss_pred             CCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCHHHHHHHHHCC-CCHHHHCCCC
T ss_conf             555434567786266369971799766754256678995799817997578789999805999999849-8989967868


Q ss_pred             H---HHHHHHHHHHHHCCC
Q ss_conf             1---214888888874557
Q gi|254780546|r  400 F---DLPVAYAFSISFGKV  415 (423)
Q Consensus       400 ~---d~~~~~~~~~~~~~~  415 (423)
                      .   +.++++......+..
T Consensus       397 Ll~~~~~ivwv~Gv~vs~~  415 (433)
T PRK10660        397 LLFYGETLIAAAGVFVTQE  415 (433)
T ss_pred             EEEECCEEEEEECEEECCC
T ss_conf             8999999999916568434


No 2  
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase; InterPro: IPR012795   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=404.97  Aligned_cols=188  Identities=36%  Similarity=0.510  Sum_probs=171.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCC----CEEEEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCEEEEE-EECCCC
Q ss_conf             39999669424899999999999864899----7299999966779878468-99999999987189889999-750478
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFG----KIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVS-WKNSKP   94 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~----~~~l~a~~vdHglr~~s~~-e~~~v~~~~~~lgi~~~~~~-~~~~~~   94 (423)
                      +|+||||||+|||||||++.++.......    .+++.|+||||++|++|++ |+++|+++|++++|++++.+ +++...
T Consensus         1 ~~lvAvSGG~DS~aLL~~L~~~~~~~~~~~~~~~~~~~a~h~nH~lR~~s~~~~~~~v~~~c~~~~~~~~~~~~~~~~~~   80 (204)
T TIGR02432         1 KILVAVSGGVDSMALLHLLLKLQPKLKISWQIKDFKLIAAHVNHGLRPESAQEEAEFVQQFCEKLNIPLEIKKLVDVKAL   80 (204)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             97888628642799999999976632787788750689999617788415899999999999961895699842124110


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCE
Q ss_conf             ----778037888545555432001234-420123456665668999986236544433223576410035-----7968
Q gi|254780546|r   95 ----QTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-----LNLW  164 (423)
Q Consensus        95 ----~~~~~~~ar~~r~~~~~~~~~~~~-~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~-----~~~~  164 (423)
                          +.++|++||..||.++.+.+.+.+ +.+|+||||+|||+||++||+.||+|+.|+  +||.+.....     .++.
T Consensus        81 ~~~~~~~~E~~AR~~RY~~f~~~~~~~~~~~~i~tAHh~dDq~ET~L~rL~RG~~~~Gl--~g~~~~~~~~~~g~~~~~~  158 (204)
T TIGR02432        81 AKGKKKNLEEAAREARYAFFEEIAKKHGKADYILTAHHADDQAETILMRLLRGSGLRGL--SGMPEIRPLGSLGWYKGGQ  158 (204)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHH--HHHCCCCCCCCCCCCCCEE
T ss_conf             12247677899999999999999997299408997248322799999987516870001--1101336633244225632


Q ss_pred             EECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7101210428999998998189320266786422101899976434
Q gi|254780546|r  165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD  210 (423)
Q Consensus       165 i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~  210 (423)
                      |+||||.++|+||..||++++|+|+|||||.|.+|+|||+|++|.|
T Consensus       159 ~~RPLL~~~k~ei~~y~~~~~l~~~eD~tN~~~~y~RNriR~~~~P  204 (204)
T TIGR02432       159 IIRPLLNISKSEIEEYLKENGLPYFEDETNQDDKYLRNRIRHELLP  204 (204)
T ss_pred             EEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHCC
T ss_conf             7707756778999999996689656578889876205899976169


No 3  
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This domain has  a strongly conserved motif SGGXD at the N terminus.
Probab=100.00  E-value=0  Score=361.02  Aligned_cols=184  Identities=40%  Similarity=0.591  Sum_probs=169.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCCCH
Q ss_conf             399996694248999999999998648997299999966779878468999999999871898899997504-7877803
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLM   99 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~-~~~~~~~   99 (423)
                      ||+||||||+|||+||++++++....   +.++.|+|||||+|++|.+|+++|+++|+++||++++..++.. .++.++|
T Consensus         1 ki~vavSGG~DS~~Ll~~l~~~~~~~---~~~l~a~hvdh~lr~~s~~~~~~v~~~~~~~~i~~~i~~~~~~~~~~~~~e   77 (185)
T cd01992           1 KILVAVSGGPDSMALLHLLSELKPRL---GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLE   77 (185)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHH
T ss_conf             99999678499999999999999974---994899998189888888999999999998599889999775367899999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHH
Q ss_conf             78885455554320012344201234566656689999862365444332235764100357968710121042899999
Q gi|254780546|r  100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS  179 (423)
Q Consensus       100 ~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~  179 (423)
                      +.||..||..+...|++.++..++||||+|||+||++|++.||+|+.|+  ++|.+. ....++.++||||.++|+||++
T Consensus        78 ~~aR~~Ry~~l~~~~~~~~~~~i~lgHh~dD~~ET~lm~l~rg~~~~gl--~gm~~~-~~~~~~~iiRPLL~~~k~ei~~  154 (185)
T cd01992          78 AAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGL--AGMPAR-IPFGGGRLIRPLLGITRAEIEA  154 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCCC--CCCCCC-CCCCCCEEEEHHHHHHHHHHHH
T ss_conf             9999999999999998735450420363036899999998718996415--277841-3579952871577853999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8998189320266786422101899976434
Q gi|254780546|r  180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD  210 (423)
Q Consensus       180 ~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~  210 (423)
                      ||+.++++|++||||.|++|+||++|+.+.|
T Consensus       155 ~~~~~~i~~~~D~sN~d~~y~Rn~iR~~iiP  185 (185)
T cd01992         155 YLRENGLPWWEDPSNEDPRYTRNRIRHELLP  185 (185)
T ss_pred             HHHHCCCCEEECCCCCCCCCCHHHHHHHHCC
T ss_conf             9998499567990879987639999746179


No 4  
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=100.00  E-value=0  Score=359.36  Aligned_cols=181  Identities=39%  Similarity=0.570  Sum_probs=167.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCCCH
Q ss_conf             399996694248999999999998648997299999966779878468999999999871898899997504-7877803
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLM   99 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~-~~~~~~~   99 (423)
                      ||+||||||+|||+|||+++.+....   ++++.++|||||+|++|++|+++|+++|+++|||+++.+++.. .++.++|
T Consensus         1 ki~vavSGG~DS~~Ll~~l~~~~~~~---~~~~~~~hvnh~lr~~s~~~~~~v~~~~~~~~i~~~i~~~~~~~~~~~~~e   77 (182)
T pfam01171         1 KILVAVSGGPDSMALLYLLKKLKPKF---GIDLTAAHVDHGLREESDREAQFVKELCRQLNIPLEVLRVDVAKKSGLNLE   77 (182)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
T ss_conf             99999678599999999999999975---997899998799865405899999999998599759999734766787775


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHH
Q ss_conf             78885455554320012344201234566656689999862365444332235764100357968710121042899999
Q gi|254780546|r  100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS  179 (423)
Q Consensus       100 ~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~  179 (423)
                      +.||..||..+...+.+.++..++||||+|||+||++|+++||+|+.|+  ++|.+.. ...+++++||||.++|+||++
T Consensus        78 ~~aR~~Ry~~l~~~a~~~~~~~i~lgHh~DD~~ET~lm~l~rG~~~~gl--~gm~~~~-~~~~~~iiRPLl~~~k~ei~~  154 (182)
T pfam01171        78 EAAREARYDFFEEIAKKNGAEVLLTAHHADDQAETFLMRLLRGSGLAGL--AGIAPVR-PLAGGRIVRPLLKVTKSEIEE  154 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCC--CCCCCCC-CCCCCEEECCCCCCCHHHHHH
T ss_conf             7899999999999898617664887434232999999999728981103--3887513-468943870211488999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8998189320266786422101899976
Q gi|254780546|r  180 FLLQRNISWCEDPSNTDDRFERVRVRRF  207 (423)
Q Consensus       180 ~~~~~~i~wveDpSN~d~~f~R~rlR~~  207 (423)
                      ||+.++++|++||||.|++|+||++|++
T Consensus       155 ~a~~~~l~~~~D~sN~d~~~~Rn~iR~e  182 (182)
T pfam01171       155 YLKEHGIPWVEDESNADLRYTRNRIRHE  182 (182)
T ss_pred             HHHHCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf             9998699368990889987643676488


No 5  
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=100.00  E-value=1.7e-40  Score=305.39  Aligned_cols=175  Identities=23%  Similarity=0.271  Sum_probs=149.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH-
Q ss_conf             3999966942489999999999986489972999999667798784689999999998718988999975047877803-
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-   99 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~-   99 (423)
                      ||+||||||+|||+||++++.|.+.. ..++++.++|||||+|++|++|+++|+++|+.++|++++..+.......... 
T Consensus         1 kilva~SGG~DS~~Ll~ll~~~~~~~-~~~~~l~~~hvnh~~r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~   79 (185)
T cd01993           1 RILVALSGGKDSLVLLHVLKKLQRRY-PYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVK   79 (185)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
T ss_conf             98999658499999999999988864-88956999995699888889999999998996299359987640367638999


Q ss_pred             --------HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHC
Q ss_conf             --------788854555543200123442012345666566899998623654443322357641003579687101210
Q gi|254780546|r  100 --------AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR  171 (423)
Q Consensus       100 --------~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~  171 (423)
                              ..+++.||..+.+.+.+.++..++||||+|||+||++|+++||++..|++  +++......++++++||||.
T Consensus        80 ~~~~~~~c~~c~r~Rr~~l~~~~~~~~~~~i~~gHh~dD~~ET~l~~l~rg~~~~~~~--~~~~~~~~~~~i~iiRPLL~  157 (185)
T cd01993          80 KRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMR--PGPILYLDEGDVTRIRPLVY  157 (185)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCC--CCCCCCCCCCCEEEEECCCC
T ss_conf             9864063468999999999999998199889753307689999999998489700056--76633356898479954988


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             428999998998189320266786422
Q gi|254780546|r  172 CRREDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       172 ~~r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      ++|+||++||++++++|++||||.+..
T Consensus       158 ~~k~ei~~y~~~~~l~~~eD~~~~~~~  184 (185)
T cd01993         158 VREKEIVLYAELNGLPFVEEECPYAGN  184 (185)
T ss_pred             CCHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             989999999998799878899988989


No 6  
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00  E-value=2.2e-39  Score=297.61  Aligned_cols=190  Identities=34%  Similarity=0.469  Sum_probs=172.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC---
Q ss_conf             98399996694248999999999998648997299999966779878468999999999871898899997504787---
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---   95 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~---   95 (423)
                      +.+|+||||||+||++||++++++...     +++.++|||||+++.|+.+.+.|+.+|+.+|+++.+.+++.....   
T Consensus        21 ~~~ilVavSGGkDS~~ll~~L~~l~~~-----~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   95 (298)
T COG0037          21 EYKILVAVSGGKDSLALLHLLKELGRR-----IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRETL   95 (298)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCC-----CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCC
T ss_conf             785899937878999999999984225-----738999970898864328999999999964998488620454310024


Q ss_pred             --CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf             --780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r   96 --TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR  173 (423)
Q Consensus        96 --~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~  173 (423)
                        .++++.||..||..+...+.+.|+.+++||||+|||+||++|++.+|++..+  +.+|++.....++..++|||+.++
T Consensus        96 ~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~--l~~~~~~~~~~~~~~~iRPL~~~~  173 (298)
T COG0037          96 DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRG--LRGMPPKRPFEGGLLIIRPLLYVR  173 (298)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHH--HHCCCCCCCCCCCCEEECCCCCCC
T ss_conf             676787999999999999999985999898567846899999999861752245--640885244578864547574688


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             899999899818932026678642210189997643453100
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA  215 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~  215 (423)
                      ++||+.|+..++++|++|+||.+.+|.||++|+.+.++....
T Consensus       174 ~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~  215 (298)
T COG0037         174 EKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEER  215 (298)
T ss_pred             HHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             999999999759987517888763023799999998998748


No 7  
>PRK10696 C32 tRNA thiolase; Provisional
Probab=100.00  E-value=3.4e-32  Score=246.70  Aligned_cols=194  Identities=22%  Similarity=0.305  Sum_probs=164.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99999998527998399996694248999999999998648997299999966779878468999999999871898899
Q gi|254780546|r    7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV   86 (423)
Q Consensus         7 ~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~   86 (423)
                      .+|..| +|+..++||+||||||+||++||++|..+++..+. +++++|+||||+....   +.+...++|+++|||+++
T Consensus        28 kAI~dy-~MIedGDRVlVglSGGKDS~~LL~iL~~Lq~~api-~FeLvAv~lD~~~pGf---~~~~L~~yl~~lGvp~~i  102 (311)
T PRK10696         28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLDQKQPGF---PEHILPEYLEKLGVEYKI  102 (311)
T ss_pred             HHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCC---CHHHHHHHHHHCCCCCEE
T ss_conf             999985-87789999999826788899999999999985899-8559999837899998---806889999974997079


Q ss_pred             EEEECC-------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-
Q ss_conf             997504-------787780378885455554320012344201234566656689999862365444332235764100-
Q gi|254780546|r   87 VSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-  158 (423)
Q Consensus        87 ~~~~~~-------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~-  158 (423)
                      ...+..       ..+.+.+..|++.|+..++..+++.|+..|++|||+||++||++|++++|+++.     +|+|... 
T Consensus       103 ~~~d~~~iv~~~~~egks~CslCsRlRRg~Ly~~A~e~G~nKIALGHH~DDi~ETfLMNlf~gG~Lk-----tM~Pkl~~  177 (311)
T PRK10696        103 VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMK-----GMPPKLMS  177 (311)
T ss_pred             EEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCC-----CCCCEEEC
T ss_conf             9840767998754368863789999999999999998699879860650558999999999668763-----67976674


Q ss_pred             CCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHHHHHHHHH
Q ss_conf             35796871012104289999989981893202667864---2210189997643453
Q gi|254780546|r  159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---DRFERVRVRRFVRDID  212 (423)
Q Consensus       159 ~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d---~~f~R~rlR~~l~~l~  212 (423)
                      ..++.++||||..+++++|.+|++..++|.|  |+|..   +.-.|+.+++.|.+..
T Consensus       178 d~g~~~VIRPL~y~~E~di~~~a~~~~fPiI--pcnlcgsq~~lqR~~ik~ml~~~~  232 (311)
T PRK10696        178 DDGKHIVIRPLAYCREKDIERFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWD  232 (311)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHCCCCEE--CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8997599830420159999999997599874--166778836789999999999999


No 8  
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.69  E-value=2.4e-16  Score=134.57  Aligned_cols=149  Identities=20%  Similarity=0.264  Sum_probs=117.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC---CCCCC
Q ss_conf             999966942489999999999986489972999999667798784689999999998718988999975047---87780
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---PQTGL   98 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~---~~~~~   98 (423)
                      |+||+|||+||+.|++++++...      .++.++|+||++-+  ..|.+.+.++|+++||+|.++..+...   -..|-
T Consensus         1 V~vA~SGGVDSs~la~la~~alG------~~v~aV~~~s~~~~--~~E~e~a~~~a~~~gi~~~~i~~~~l~~~~~~~N~   72 (202)
T cd01990           1 VAVAFSGGVDSTLLLKAAVDALG------DRVLAVTATSPLFP--RRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNP   72 (202)
T ss_pred             CEEECCCCHHHHHHHHHHHHHHC------CCEEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCC
T ss_conf             98982385999999999999768------78799997279899--78999999999863985799734111016554597


Q ss_pred             HH---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHC--CC
Q ss_conf             37---88854555543200123442012345666566899998623654443322357641003579687101210--42
Q gi|254780546|r   99 MA---AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CR  173 (423)
Q Consensus        99 ~~---~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~--~~  173 (423)
                      .+   .+....|..+...+.+.+..+++.|.+.||..|.      |.    |+.  ..       ....+..||..  ++
T Consensus        73 ~~RCy~CK~~l~~~l~~~a~~~g~~~v~dGtn~dDl~d~------RP----Gl~--A~-------~e~~v~sPL~e~gl~  133 (202)
T cd01990          73 PDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDY------RP----GLK--AL-------RELGVRSPLAEAGLG  133 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------CC----CHH--HH-------HHCCCCCCHHHCCCC
T ss_conf             556229989999999999996799789415757632355------78----688--99-------876998852651978


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899999899818932026678642
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~  197 (423)
                      |+|+|+++++.|+++++-||...-
T Consensus       134 K~eVR~la~~lgLp~~~kp~~~CL  157 (202)
T cd01990         134 KAEIRELARELGLPTWDKPAMACL  157 (202)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf             899999999839985668998754


No 9  
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.66  E-value=2.5e-15  Score=127.44  Aligned_cols=167  Identities=20%  Similarity=0.288  Sum_probs=130.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             97698999999998527998399996694248999999999998648997299999966779878468999999999871
Q gi|254780546|r    1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL   80 (423)
Q Consensus         1 ~~~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~l   80 (423)
                      |.+|-.+.++.+++...   +++||+|||+||+.|+.++++.+.      -++.|+|||-..-+  ..+.+.+...++++
T Consensus         2 ~~~~Kl~~l~~~ik~~~---kv~vAfSGGvDSslLa~la~~~lG------~~v~AvTv~sP~~p--~~e~e~A~~~A~~i   70 (269)
T COG1606           2 MLLSKLERLKKAIKEKK---KVVVAFSGGVDSSLLAKLAKEALG------DNVVAVTVDSPYIP--RREIEEAKNIAKEI   70 (269)
T ss_pred             CHHHHHHHHHHHHHHCC---EEEEEECCCCCHHHHHHHHHHHHC------CCEEEEEEECCCCC--HHHHHHHHHHHHHH
T ss_conf             43799999999986437---399996588427999999999735------64699997168777--66606789999994


Q ss_pred             CCCEEEEEEECCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8988999975047-----87780378885455554320012344201234566656689999862365444332235764
Q gi|254780546|r   81 RIAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD  155 (423)
Q Consensus        81 gi~~~~~~~~~~~-----~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~  155 (423)
                      ||.|.++..+...     ...+-+-.+..+.|..+...+.+.|.++++-|.+++|--+      -|    -|.  -+.  
T Consensus        71 Gi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~------~R----PG~--rA~--  136 (269)
T COG1606          71 GIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD------YR----PGL--RAL--  136 (269)
T ss_pred             CCCCEEEEHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCC------CC----CCH--HHH--
T ss_conf             8762465500025233049987355778999999999999739988974775787337------88----302--357--


Q ss_pred             CCCCCCCCEEECCH--HCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             10035796871012--1042899999899818932026678642
Q gi|254780546|r  156 TILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       156 ~~~~~~~~~i~RPL--L~~~r~~l~~~~~~~~i~wveDpSN~d~  197 (423)
                           ...-+.-||  ++++|++|+.+++..|++|+|-||-..-
T Consensus       137 -----kE~gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aCl  175 (269)
T COG1606         137 -----KELGIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMACL  175 (269)
T ss_pred             -----HHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             -----760777718883975999999999759984558654332


No 10 
>KOG2840 consensus
Probab=99.56  E-value=2.7e-14  Score=120.16  Aligned_cols=201  Identities=17%  Similarity=0.179  Sum_probs=160.0

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      +.|..+++|+++.|||+||++|+|.+..+-. +..++.++..+.||||++..-++-...|+..-.++|+|..|+.+....
T Consensus        46 ~l~~rge~v~igasGgkdstvlA~v~~~Ln~-r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~  124 (347)
T KOG2840          46 KLFARGERVAIGASGGKDSTVLAYVLDALNE-RHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLY  124 (347)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             8667888313255566027799999998403-017884134210100364200429999998614207863884199972


Q ss_pred             C--------------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             8--------------77803788854555543200123442012345666566899998623654443322357641003
Q gi|254780546|r   94 P--------------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY  159 (423)
Q Consensus        94 ~--------------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~  159 (423)
                      .              ..|....+-.-|.+++...+...++..+.|||++||-+||++|+++||-.-.-..+..+.-....
T Consensus       125 ~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e  204 (347)
T KOG2840         125 GEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLE  204 (347)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             50208889999866230460451189888887202213414553022306789999999997478875302365567644


Q ss_pred             CCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             57968710121042899999899818932026678642210189997643453100
Q gi|254780546|r  160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA  215 (423)
Q Consensus       160 ~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~  215 (423)
                      .+.+.-.+||-...+.||.-|+....+.|+.-..|..+.-.|--.|..|+++....
T Consensus       205 ~~~~~r~kplk~~~~keivLya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~~~  260 (347)
T KOG2840         205 MGIIPRLKPLKYASEKEIVLYASLSKLRYFSTECVKAPGASRGDARILLKDLERER  260 (347)
T ss_pred             CCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             67663334444401402016878888999877640487530789999964653417


No 11 
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=99.54  E-value=2.4e-14  Score=120.54  Aligned_cols=172  Identities=16%  Similarity=0.157  Sum_probs=119.7

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-----CC-CCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             79983999966942489999999999986489972999999667-----79-8784689999999998718988999975
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CL-RETAKDEVRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH-----gl-r~~s~~e~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      +...||+||+|||+||++-+++|++-       +++|..+|.--     +- ..-|.++...++++|+.|||||+++.+.
T Consensus         2 ~sk~rV~VamSGGVDSsVaA~LL~~~-------Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~   74 (355)
T PRK00143          2 PSKKRVVVGMSGGVDSSVAAALLKEQ-------GYDVIGLFMKLWDDDDGSGGCCAEEDIADARAVADKLGIPLYVVDFA   74 (355)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf             98888999916789999999999977-------99589999988768877789985788999999999869857996869


Q ss_pred             C-----------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC-CCC
Q ss_conf             0-----------------478778037888545555432001234420123456665668999986236544--43-322
Q gi|254780546|r   91 N-----------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE--KG-MGL  150 (423)
Q Consensus        91 ~-----------------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~--~g-~~l  150 (423)
                      .                 ..|.+.+... +......+.+.+++.++++++|||.+-=.-.+--.+|.++.-.  +. --|
T Consensus        75 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN-~~IKFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL  153 (355)
T PRK00143         75 KEFWDNVFDYFLDEYKAGRTPNPCVLCN-KEIKFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYFL  153 (355)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHCC-CCCCHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEEE
T ss_conf             9876788999999997699999733408-723399999999873998423352599991598189986788988720576


Q ss_pred             CCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             35764100357968710121042899999899818932026678642210
Q gi|254780546|r  151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       151 ~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
                      +.+.+...    -+++=||-+++|+|+|+.|+++|++..+-|..+|..|-
T Consensus       154 ~~l~~~~L----~~~~FPLG~~~K~eVR~iA~~~gL~~a~K~dSq~ICFi  199 (355)
T PRK00143        154 YQLTQEQL----AKLLFPLGELTKPEVREIAAEIGLPTAKKKDSTGICFI  199 (355)
T ss_pred             ECCCHHHH----HHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             10579887----42075876773589999999758988997777860440


No 12 
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The  archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.48  E-value=8.9e-14  Score=116.45  Aligned_cols=168  Identities=18%  Similarity=0.237  Sum_probs=117.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC---C---CCCHHHHHHHHHHHHHHCCCCEEEEEEEC---
Q ss_conf             39999669424899999999999864899729999996677---9---87846899999999987189889999750---
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L---RETAKDEVRYVSDVCSRLRIAHSVVSWKN---   91 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg---l---r~~s~~e~~~v~~~~~~lgi~~~~~~~~~---   91 (423)
                      ||+||+|||+||++-++||++.       ++++..+|.-.-   -   ..-|.++...++++|+.|||||+++....   
T Consensus         1 kV~v~mSGGVDSsvaA~LL~~~-------G~~V~gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~ef~   73 (349)
T cd01998           1 KVVVAMSGGVDSSVAAALLKEQ-------GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYW   73 (349)
T ss_pred             CEEEECCCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             9899907789999999999877-------995799999967887667898867789999999998699679968099886


Q ss_pred             --------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHHHHHHHCCCCC--C-CCCCCCC
Q ss_conf             --------------47877803788854555543200123442012345666566-8999986236544--4-3322357
Q gi|254780546|r   92 --------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL-ETVYMRSQRDYAE--K-GMGLSGM  153 (423)
Q Consensus        92 --------------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~-Et~l~rl~r~sg~--~-g~~l~~~  153 (423)
                                    ..|.+.+... +...+..+.+.+++.++.+++|||.+.=.. ++--.++.++.-.  + .--|+.+
T Consensus        74 ~~V~~~f~~~Y~~G~TPNPcv~CN-~~IKF~~l~~~A~~~g~d~iATGHYAri~~~~~~~~~L~r~~D~~KDQSYfL~~l  152 (349)
T cd01998          74 EKVFEPFLEEYKKGRTPNPDILCN-KEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQL  152 (349)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHCC-CEEEHHHHHHHHHHCCCCEECCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECC
T ss_conf             888999999997489998762118-7351999999998759986413514788975898489987689987820564012


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             64100357968710121042899999899818932026678642210
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
                      .+...    -+++=||-+++|+|+|+.|++.|++-.+-|..++..|-
T Consensus       153 ~~~~L----~~~~FPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi  195 (349)
T cd01998         153 SQEQL----SRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFI  195 (349)
T ss_pred             CHHHH----HHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             48766----10387887865389999999859998997777760331


No 13 
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.46  E-value=1.7e-13  Score=114.46  Aligned_cols=168  Identities=19%  Similarity=0.259  Sum_probs=115.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC-------CCHHHHHHHHHHHHHHCCCCEEEEEEEC--
Q ss_conf             3999966942489999999999986489972999999667798-------7846899999999987189889999750--
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDVCSRLRIAHSVVSWKN--   91 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr-------~~s~~e~~~v~~~~~~lgi~~~~~~~~~--   91 (423)
                      ||+||+|||+||++-++||++-       +++|+.+|...--.       .-|.++...++++|+.|||||+++.+..  
T Consensus         2 kV~VamSGGVDSsVaA~LL~~~-------Gy~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~~f   74 (354)
T pfam03054         2 KVVVAMSGGVDSSVAAYLLKEQ-------GYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCEQLGIPLYVVNFEKEY   74 (354)
T ss_pred             EEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf             6999904789999999999977-------996399999956688766788998899999999999869978997879987


Q ss_pred             ---------------CCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC-CCCCC
Q ss_conf             ---------------4787780378885455554320012-34420123456665668999986236544--43-32235
Q gi|254780546|r   92 ---------------SKPQTGLMAAAREARYALISEHAKT-INATLIMTAHTFDDQLETVYMRSQRDYAE--KG-MGLSG  152 (423)
Q Consensus        92 ---------------~~~~~~~~~~ar~~r~~~~~~~~~~-~~~~~l~~ah~~dD~~Et~l~rl~r~sg~--~g-~~l~~  152 (423)
                                     ..|.+.+... +...+..+.+.+.+ .|+++++|||.+-=.-..--.+|.++.-.  +. --|+.
T Consensus        75 ~~~Vi~~fv~~Y~~G~TPNPcv~CN-~~IKFg~l~~~A~~~lGad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL~~  153 (354)
T pfam03054        75 WEKVFEPFLDEYKNGRTPNPDILCN-REIKFGALLDYAKQVLGADYLATGHYARVSLNENESELLRGKDKNKDQSYFLSG  153 (354)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHC-CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEC
T ss_conf             5899999999997699998414418-964389999999986699810447428999049938999899999980178610


Q ss_pred             CCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             764100357968710121042899999899818932026678642210
Q gi|254780546|r  153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       153 ~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
                      +.+...    -+++=||-+++|+|+|+.|++.|++..+-|..++..|-
T Consensus       154 l~q~~L----~~~lFPLG~~~K~eVR~iA~~~gL~~a~K~dSq~ICFi  197 (354)
T pfam03054       154 LSQEQL----EKLLFPLGDLTKEEVRKIAKEAGLPTAKKKDSQGICFI  197 (354)
T ss_pred             CCHHHH----HHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             789876----43182876885289999999769988998777870330


No 14 
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232   This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.44  E-value=2.4e-12  Score=106.28  Aligned_cols=164  Identities=19%  Similarity=0.296  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHH-HHHHHHHHHHHHCCCC
Q ss_conf             99999999852799839999669424899999999999864899729999996677987-846-8999999999871898
Q gi|254780546|r    6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAK-DEVRYVSDVCSRLRIA   83 (423)
Q Consensus         6 ~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~-~e~~~v~~~~~~lgi~   83 (423)
                      .+.++.|++.-.+..+|+||+|||+||+.|+.++.+.+      ..++.|+||-   +| -|. .|.+..+..++.+||.
T Consensus         2 L~~L~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~------g~~~lait~~---sP~~sp~~el~~A~~~A~~~g~~   72 (263)
T TIGR00268         2 LENLRNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVA------GTEVLAITVV---SPSISPRRELEDAKAIAKEIGVK   72 (263)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH------HHCEEEEEEE---CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             46888898767640816999517465899999998753------1011357876---27757354489999999880830


Q ss_pred             EEEEEEECCC-C--CCCCHHHH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             8999975047-8--77803788---8545555432001234420123456665668999986236544433223576410
Q gi|254780546|r   84 HSVVSWKNSK-P--QTGLMAAA---REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI  157 (423)
Q Consensus        84 ~~~~~~~~~~-~--~~~~~~~a---r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~  157 (423)
                      |.+++.+... +  +.|.++++   ...-+..|...+.+.|..+++-|.+.||..+      .|.         |+... 
T Consensus        73 he~~~~d~~~n~~f~~N~~~RCY~CK~~~~~~L~~~a~~~gy~~V~dGtN~dDL~~------~RP---------G~~A~-  136 (263)
T TIGR00268        73 HELVKIDKMANPNFRANVEERCYFCKKKVLSILVKLAEKRGYDVVVDGTNADDLED------HRP---------GLRAV-  136 (263)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCC---------HHHHH-
T ss_conf             12110012368500168854441548889999899998639957982346200023------675---------13567-


Q ss_pred             CCCCCCEEE-CCH--HCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             035796871-012--1042899999899818932026678642
Q gi|254780546|r  158 LYDLNLWIS-RPF--LRCRREDIRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       158 ~~~~~~~i~-RPL--L~~~r~~l~~~~~~~~i~wveDpSN~d~  197 (423)
                         ...... -|+  +.++|.||+..++..|++|.|-||...-
T Consensus       137 ---~E~~g~~SP~aef~I~K~eir~ia~~lg~~~~DKP~~~CL  176 (263)
T TIGR00268       137 ---KELNGVYSPWAEFGITKKEIREIAKSLGLSFYDKPSEACL  176 (263)
T ss_pred             ---HHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             ---6607886872002568799999999748898888662102


No 15 
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.39  E-value=2.6e-12  Score=106.09  Aligned_cols=172  Identities=16%  Similarity=0.188  Sum_probs=121.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             998399996694248999999999998648997299999966779-----878468999999999871898899997504
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-----r~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      ...||+||+|||+||++-+++|++.       +++|..+|..-..     ...|.++...+++.|..+|||++++.+...
T Consensus         2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-------GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~   74 (356)
T COG0482           2 KKKKVLVGMSGGVDSSVAAYLLKEQ-------GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE   74 (356)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf             8767999905777899999999976-------974999999964147888677256789999999980995599846899


Q ss_pred             ---------------CCCCCCHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCC
Q ss_conf             ---------------7877803788-854555543200123442012345666566---899998623654443322357
Q gi|254780546|r   93 ---------------KPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        93 ---------------~~~~~~~~~a-r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~---Et~l~rl~r~sg~~g~~l~~~  153 (423)
                                     -.++|-.-.+ +......+.+.+.+.++++++|||.+--.-   +..+.|-....-....-|..+
T Consensus        75 y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~  154 (356)
T COG0482          75 FWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYAL  154 (356)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf             88888887789985799999651048788999999999975998578744676543776000146787420300020126


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             64100357968710121042899999899818932026678642210
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
                      .+...    -.++=||-++.|.++|..|.+.|++.-+-+--++..|-
T Consensus       155 ~~~ql----~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi  197 (356)
T COG0482         155 SQEQL----ERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFI  197 (356)
T ss_pred             CHHHH----HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEC
T ss_conf             88777----53225677777789999999759976676667762213


No 16 
>PRK00919 GMP synthase subunit B; Validated
Probab=99.25  E-value=1.6e-10  Score=93.41  Aligned_cols=164  Identities=20%  Similarity=0.227  Sum_probs=111.2

Q ss_pred             CHHHHHHHHH---HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHH
Q ss_conf             9899999999---8527998399996694248999999999998648997299999966779-87846899999999987
Q gi|254780546|r    4 SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR   79 (423)
Q Consensus         4 ~p~~~~~~~~---~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-r~~s~~e~~~v~~~~~~   79 (423)
                      .|..-+...+   +.-.+..++++|+|||+||++.+.|++....      -++++++||||| |.+   |.+.|.+.+++
T Consensus         2 n~~~fi~~~i~~Ir~~Vg~~kvi~~lSGGVDStV~A~Ll~kAig------~~l~~v~VD~GllR~~---E~~~V~~~~~~   72 (306)
T PRK00919          2 DPEKFIEEAIEEIREEVGDGKAIIALSGGVDSSVAAVLAHRAIG------DRLLAVYVDTGLMRKG---ETERIREIFKD   72 (306)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH------CCEEEEEECCCCCCCC---CHHHHHHHHHH
T ss_conf             87999999999999984898599991688479999999998864------2659999868988798---69999999983


Q ss_pred             CCCCEEEEEEECC-----CCCCCCH---HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             1898899997504-----7877803---7888545555432001234420123456665668999986236544433223
Q gi|254780546|r   80 LRIAHSVVSWKNS-----KPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS  151 (423)
Q Consensus        80 lgi~~~~~~~~~~-----~~~~~~~---~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~  151 (423)
                       |++..++.....     +.-..-|   ..-....+..+.+.+++.+..+++.|...-|.+|+       +++++.-.=.
T Consensus        73 -~~~l~~vda~~~Fl~~L~gv~DPE~KRKiIG~~Fi~vfe~~~~~~~~~~LaQGTlyPDvIES-------~~~IKSHHNV  144 (306)
T PRK00919         73 -GLNLRIVDASDRFLEALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES-------EGGIKSHHNV  144 (306)
T ss_pred             -CCCCEEEEHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECEECCCHHHC-------CCCCCCCCCC
T ss_conf             -58928983499999973799895674602579999999999998298768511073760204-------6764341668


Q ss_pred             CCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             576410035796871012104289999989981893
Q gi|254780546|r  152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       152 ~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                      +.-|.   .-...++-||-.+-|+|.|+..++.|++
T Consensus       145 ggLp~---~m~~kliEPLr~LfKDEVR~lG~~LGlp  177 (306)
T PRK00919        145 GGLPE---GMVLKIVEPLRDLYKDEVREVARALGLP  177 (306)
T ss_pred             CCCHH---HCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             87733---2356310318998559999999996978


No 17 
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674   The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=99.23  E-value=8.4e-11  Score=95.43  Aligned_cols=168  Identities=21%  Similarity=0.284  Sum_probs=114.0

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEE
Q ss_conf             99999985279983999966942489999999999986489972999999667798784689999999998-71898899
Q gi|254780546|r    8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIAHSV   86 (423)
Q Consensus         8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~-~lgi~~~~   86 (423)
                      +|..- +.-.+..++++|+|||+||++.+.|++...      +-+|+++-|||||--  ..|.+.|++... ++|++...
T Consensus         6 ~i~~i-r~~VGD~~vi~ALSGGVDSsV~A~L~hrAI------GD~L~~vFVD~GLlR--~gE~E~V~~~F~~~lg~nl~~   76 (319)
T TIGR00884         6 AIEEI-REQVGDAKVIIALSGGVDSSVAAVLLHRAI------GDRLTCVFVDHGLLR--KGEAERVVKTFSDKLGLNLVV   76 (319)
T ss_pred             HHHHH-HHHCCCCEEEEEECCCHHHHHHHHHHHHHH------CCCEEEEEECCCCCC--CCCHHHHHHHHHHHHCCCCEE
T ss_conf             99999-852288468998108815899999998642------276048982278887--663789999987530898278


Q ss_pred             EEEECCC--CCCCCHHHHH------HHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCC-C
Q ss_conf             9975047--8778037888------545555432001234----4201234566656689999862365-44433223-5
Q gi|254780546|r   87 VSWKNSK--PQTGLMAAAR------EARYALISEHAKTIN----ATLIMTAHTFDDQLETVYMRSQRDY-AEKGMGLS-G  152 (423)
Q Consensus        87 ~~~~~~~--~~~~~~~~ar------~~r~~~~~~~~~~~~----~~~l~~ah~~dD~~Et~l~rl~r~s-g~~g~~l~-~  152 (423)
                      +.-....  .-.|..+...      +..-..+.+.+++.+    +.+|+.|.-.-|-+|+.-.....++ .++.-+=- |
T Consensus        77 VDA~e~FL~~L~GV~DPE~KRKIIG~~FI~VFE~~A~~~~~~~~a~yL~QGTlYPDvIES~~~kG~~~a~~IKsHHNVGG  156 (319)
T TIGR00884        77 VDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAEKIGDKKKAEYLVQGTLYPDVIESASSKGTSGAATIKSHHNVGG  156 (319)
T ss_pred             ECCCHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             76107988752889870341311225667778889985079977999973434474646023047764764563106688


Q ss_pred             CCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf             764100357968710121042899999899818932
Q gi|254780546|r  153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW  188 (423)
Q Consensus       153 ~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w  188 (423)
                      +    +..-.+.++=||=.+-|+|.|...++.|+|-
T Consensus       157 L----P~~m~l~LvEPLR~LfKDEVR~lG~~LGlP~  188 (319)
T TIGR00884       157 L----PEDMKLKLVEPLRELFKDEVRKLGKELGLPE  188 (319)
T ss_pred             C----CCCCEEEEECCCHHCCHHHHHHHHHHCCCCH
T ss_conf             8----5426025875402302178999998718867


No 18 
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.23  E-value=1.5e-10  Score=93.66  Aligned_cols=144  Identities=18%  Similarity=0.184  Sum_probs=98.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCEEEEEEECC------
Q ss_conf             399996694248999999999998648997299999966779878--468999999999871898899997504------
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCSRLRIAHSVVSWKNS------   92 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~--s~~e~~~v~~~~~~lgi~~~~~~~~~~------   92 (423)
                      |+++++|||.||.+-++++.+    +   +++|..+|++-+--..  +.+.+..+.+...+++..+....+...      
T Consensus         1 kvl~L~SGGiDS~VAa~ll~k----r---G~~V~~l~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   73 (177)
T cd01712           1 KALALLSGGIDSPVAAWLLMK----R---GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFFVQKE   73 (177)
T ss_pred             CEEEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf             989995778169999999998----7---998999999899988889999999999999994899628999453899999


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             ----7877803788854555543200123442012345666566899998623654443322357641003579687101
Q gi|254780546|r   93 ----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP  168 (423)
Q Consensus        93 ----~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RP  168 (423)
                          .+..+-.-.+++.-|+.....+++.|+..++|||...-.+-..+.++.           .+    ...-...++||
T Consensus        74 ~~~~g~~~npcv~ckr~m~r~a~~~A~~~ga~~IvTGe~lGQvasqt~~nl~-----------~i----~~~~~~~ilRP  138 (177)
T cd01712          74 IYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLL-----------VI----SSGTDLPILRP  138 (177)
T ss_pred             HHHHCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH-----------HH----HHHHCCCCCCC
T ss_conf             9970888898636299999999999998699899866522204476899999-----------99----87425642148


Q ss_pred             HHCCCHHHHHHHHHHHCC
Q ss_conf             210428999998998189
Q gi|254780546|r  169 FLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       169 LL~~~r~~l~~~~~~~~i  186 (423)
                      |++++|+||++++++.|+
T Consensus       139 L~~~dK~EI~~~A~~igt  156 (177)
T cd01712         139 LIGFDKEEIIGIARRIGT  156 (177)
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             889998999999998096


No 19 
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold.   The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.15  E-value=6.1e-10  Score=89.34  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=91.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC-------
Q ss_conf             3999966942489999999999986489972999999667798784689999999998718988999975047-------
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-------   93 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~-------   93 (423)
                      +++|++|||+||+|||||+.+.....    ..+.++++|.|.  +-.+-.++++++.+.+|++..+.......       
T Consensus         1 ~~~vsfSGGKDS~vll~L~~~~~~~~----~~~~vvf~DTg~--e~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (173)
T cd01713           1 NVVVSFSGGKDSTVLLHLALKALPEL----KPVPVIFLDTGY--EFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALG   74 (173)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCC----CCEEEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf             95999646499999999999966555----883799968889--898999999999987399079996897289999861


Q ss_pred             -CCCCCHHHH-----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             -877803788-----85455554320012344201234566656689999862365444332235764100357968710
Q gi|254780546|r   94 -PQTGLMAAA-----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR  167 (423)
Q Consensus        94 -~~~~~~~~a-----r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~R  167 (423)
                       .........     ...+-.-+....++.+....++|--+++-..-..+              ..........+...+.
T Consensus        75 ~~~~~~~~~~~~~c~~~~K~~P~~~~~~~~~~~~~~~GiR~~Es~~R~~~--------------~~~~~~~~~~~~~~~~  140 (173)
T cd01713          75 LKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALL--------------PVVWTDDGKGGILKVN  140 (173)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCC--------------CCCCCCCCCCCEEEEE
T ss_conf             35779983226889888807899999983298289994121462444437--------------6234326889989993


Q ss_pred             CHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             1210428999998998189320
Q gi|254780546|r  168 PFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       168 PLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      |+++++.+++-+|+..+++++.
T Consensus       141 Pi~~Wt~~dVw~yi~~~~l~~~  162 (173)
T cd01713         141 PLLDWTYEDVWAYLARHGLPYN  162 (173)
T ss_pred             CHHHCCHHHHHHHHHHCCCCCC
T ss_conf             2285999999999998399999


No 20 
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.04  E-value=3.1e-09  Score=84.30  Aligned_cols=156  Identities=19%  Similarity=0.290  Sum_probs=103.4

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-CCCCHHHHHHHHHHHH-HHCCCCEEEEEEEC
Q ss_conf             852799839999669424899999999999864899729999996677-9878468999999999-87189889999750
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC-SRLRIAHSVVSWKN   91 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-lr~~s~~e~~~v~~~~-~~lgi~~~~~~~~~   91 (423)
                      +.-.+..+|+.|+|||+||++.+.|++....      -+++.++|||| ||.+   |.+.|.+.. +.+|++..++....
T Consensus       211 k~~Vg~~kVi~~lSGGVDStV~A~Ll~kAIG------d~l~cvfVD~GllRkn---E~~~V~~~~~~~lgl~~~~vdA~~  281 (513)
T PRK00074        211 REQVGDKKVILGLSGGVDSSVAAVLLHKAIG------DQLTCVFVDHGLLRKN---EAEQVMEMFREHFGLNLIHVDASD  281 (513)
T ss_pred             HHHHCCCEEEEEECCCCCHHHHHHHHHHHHH------HCEEEEEECCCCCCCC---CHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf             9983876289972388308999999999851------1248999537711167---299999999886199679922489


Q ss_pred             CC--CCCCC--HHHHH----HHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---C--C
Q ss_conf             47--87780--37888----5455554320012-344201234566656689999862365444332235764---1--0
Q gi|254780546|r   92 SK--PQTGL--MAAAR----EARYALISEHAKT-INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD---T--I  157 (423)
Q Consensus        92 ~~--~~~~~--~~~ar----~~r~~~~~~~~~~-~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~---~--~  157 (423)
                      ..  .-.++  .+.-|    ....+.+.+.+++ .++.+++.|...-|.+|+.-     +++.    ...+..   +  .
T Consensus       282 ~Fl~~L~gv~DPE~KRKIIG~~FI~vfe~~a~~~~~~~~L~QGTlYPDvIES~~-----~~~~----a~~IKsHHNVggl  352 (513)
T PRK00074        282 RFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESAS-----GTGK----AATIKSHHNVGGL  352 (513)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECC-----CCCC----CCCCCCCCCCCCC
T ss_conf             999973799897996788778999999999975799839964676550688479-----8999----8860487758788


Q ss_pred             CCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             035796871012104289999989981893
Q gi|254780546|r  158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       158 ~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                      +..-...++-||-.+-|+|.|...++.|++
T Consensus       353 p~~~~~~lvEPlr~lfKDEVR~lg~~Lglp  382 (513)
T PRK00074        353 PEDMKLKLVEPLRELFKDEVRKLGLELGLP  382 (513)
T ss_pred             HHHCCCEEEEEHHHHCCHHHHHHHHHHCCC
T ss_conf             566487545031756158999999996897


No 21 
>pfam01507 PAPS_reduct Phosphoadenosine phosphosulfate reductase family. This domain is found in phosphoadenosine phosphosulfate (PAPS) reductase enzymes or PAPS sulfotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP). It is also found in NodP nodulation protein P from Rizobium which has ATP sulfurylase activity (sulfate adenylate transferase).
Probab=99.04  E-value=2.4e-09  Score=85.07  Aligned_cols=147  Identities=15%  Similarity=0.154  Sum_probs=84.6

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----C
Q ss_conf             39999669424899999999999864899729999996677987846899999999987189889999750478-----7
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-----Q   95 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~-----~   95 (423)
                      +|+|++|||+||+|||||+.+..       ..+.++++|.|.  +-.+-.+++.++.+++|++..+...+....     .
T Consensus         1 ~v~vsfSGGKDS~vlL~L~~~~~-------~~~~vvf~Dtg~--efpet~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (174)
T pfam01507         1 ELVVSFSGGKDSLVLLHLASKAF-------PPGPVIFIDTGY--EFPETYEFVDELEEKYGLNLKVYRPEDSFAEGINPE   71 (174)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHC-------CCCCEEEEECCC--CCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC
T ss_conf             99999576099999999999848-------997579997899--868999999999998498189980867798776312


Q ss_pred             CCCHHH-----HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHH
Q ss_conf             780378-----885455554320012344201234566656689999862365444332235764100357968710121
Q gi|254780546|r   96 TGLMAA-----AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL  170 (423)
Q Consensus        96 ~~~~~~-----ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL  170 (423)
                      +.....     ++.....-+....++.+...+++|--.++-..-..+              ..........+..-+.|++
T Consensus        72 ~~~~~~~~~~~~~~~K~~p~~~~l~~~~~~~~i~GiR~~Es~~R~~~--------------~~~~~~~~~~~~~~~~PI~  137 (174)
T pfam01507        72 GIPSKLWEDCPCRLRKVEPLKRALKKLDFDAWFTGLRRDESPSRAKL--------------PIVSIDGDFPKVIKVFPLL  137 (174)
T ss_pred             CCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHC--------------CEEEEECCCCCEEEEECHH
T ss_conf             79501145452146651799999986599689995100244566407--------------1674305788859995005


Q ss_pred             CCCHHHHHHHHHHHCCCCCC
Q ss_conf             04289999989981893202
Q gi|254780546|r  171 RCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       171 ~~~r~~l~~~~~~~~i~wve  190 (423)
                      +++.+++-+|+.++|+++..
T Consensus       138 ~Wt~~DVw~yi~~~~lp~np  157 (174)
T pfam01507       138 NWTETDVWQYILANNVPYNP  157 (174)
T ss_pred             HCCHHHHHHHHHHCCCCCCC
T ss_conf             29999999999983999995


No 22 
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.03  E-value=2.4e-09  Score=85.06  Aligned_cols=152  Identities=22%  Similarity=0.284  Sum_probs=99.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHH-CCCCEEEEEEECC-----C
Q ss_conf             399996694248999999999998648997299999966779-87846899999999987-1898899997504-----7
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR-LRIAHSVVSWKNS-----K   93 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-r~~s~~e~~~v~~~~~~-lgi~~~~~~~~~~-----~   93 (423)
                      ||++|+|||+||++.+.|++....      -++++++||||| |.+   |.+.|.+.+++ ++++..++.....     +
T Consensus         1 kVi~~lSGGVDStV~A~Ll~kAig------~~l~~vfVDnGlmRk~---E~e~V~~~~~~~~~~~~~~vdas~~Fl~~L~   71 (295)
T cd01997           1 KVILALSGGVDSTVAAVLLHKAIG------DRLTCVFVDNGLLRKN---EAERVEELFSKLLGINLIVVDASERFLSALK   71 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHH------CCEEEEEECCCCCCCC---CHHHHHHHHHHHCCCCEEEECHHHHHHHHHC
T ss_conf             989990578289999999998865------0569999858978888---2999999998706997799566999999865


Q ss_pred             CCCCCHH---HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             8778037---888545555432001234-4201234566656689999862365--444332235764100357968710
Q gi|254780546|r   94 PQTGLMA---AAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDY--AEKGMGLSGMCDTILYDLNLWISR  167 (423)
Q Consensus        94 ~~~~~~~---~ar~~r~~~~~~~~~~~~-~~~l~~ah~~dD~~Et~l~rl~r~s--g~~g~~l~~~~~~~~~~~~~~i~R  167 (423)
                      ....-|+   .-....++.+.+.+++.+ +.+++.|...-|.+|+.--   .++  -++.-.=.+..|   ..-.+.++-
T Consensus        72 gv~DPE~KRKiIG~~Fi~vf~~~~~~~~~~~~L~QGTlyPDvIES~~~---~~~a~~IKsHHNvggLp---~~~~~kliE  145 (295)
T cd01997          72 GVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSG---KGSADTIKSHHNVGGLP---EDMKLKLIE  145 (295)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC---CCCCCEEEEECCCCCCC---HHCCCCCCH
T ss_conf             877925636565389999999999755886189724302625750788---88875145224567772---322654001


Q ss_pred             CHHCCCHHHHHHHHHHHCCC
Q ss_conf             12104289999989981893
Q gi|254780546|r  168 PFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       168 PLL~~~r~~l~~~~~~~~i~  187 (423)
                      ||-.+-|+|.|+..++.|++
T Consensus       146 PLr~LfKDEVR~lG~~LGlp  165 (295)
T cd01997         146 PLRDLFKDEVRELGRELGLP  165 (295)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             67887459999999986897


No 23 
>KOG2805 consensus
Probab=99.03  E-value=8.5e-10  Score=88.30  Aligned_cols=173  Identities=17%  Similarity=0.214  Sum_probs=112.7

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-------CCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2799839999669424899999999999864899729999996-------677987846899999999987189889999
Q gi|254780546|r   16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-------DHCLRETAKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v-------dHglr~~s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      -.++++|+||+|||+||.+-++|++.-       ++++..++.       ++|-+.-...+.+.++.+|+.|+||++.+.
T Consensus         2 p~~~~~VvvamSgGVDSsVaa~Ll~~~-------g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn   74 (377)
T KOG2805           2 PEKPDRVVVAMSGGVDSSVAARLLAAR-------GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN   74 (377)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             866654899953771189999999741-------8871699662201222356689811208999999987097027874


Q ss_pred             EE-----------------CCCCCCCCHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHH---HHHHCCC---C
Q ss_conf             75-----------------047877803788854555-5432001234420123456665668999---9862365---4
Q gi|254780546|r   89 WK-----------------NSKPQTGLMAAAREARYA-LISEHAKTINATLIMTAHTFDDQLETVY---MRSQRDY---A  144 (423)
Q Consensus        89 ~~-----------------~~~~~~~~~~~ar~~r~~-~~~~~~~~~~~~~l~~ah~~dD~~Et~l---~rl~r~s---g  144 (423)
                      +.                 +..|.+.+... +...+. +....-...+.++++|||-+--..|...   .+++.+.   -
T Consensus        75 f~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN-~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~K  153 (377)
T KOG2805          75 FVKEYWNDVFSPFLEEYENGRTPNPDILCN-KHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVK  153 (377)
T ss_pred             EHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf             379999999999988876589999971344-5142117899998755887377421214403755676235761256667


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44332235764100357968710121042899999899818932026678642210
Q gi|254780546|r  145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       145 ~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
                      -.+.-|+.+.....    -+++=||-.++|+|+++.+++.|++--|.|--+-..|-
T Consensus       154 DQt~FL~~in~~~L----~r~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICFv  205 (377)
T KOG2805         154 DQTYFLSTINQTQL----KRLLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICFV  205 (377)
T ss_pred             CCEEEEECCCHHHH----HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf             73267630369999----86206676567799999998659864568665026885


No 24 
>pfam02568 ThiI Thiamine biosynthesis protein (ThiI). ThiI is required for thiazole synthesis, required for thiamine biosynthesis.
Probab=99.02  E-value=3.6e-09  Score=83.85  Aligned_cols=151  Identities=17%  Similarity=0.158  Sum_probs=101.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC--CHHHHHHHHHHHHHHC----CCCEEEEEEECC
Q ss_conf             9839999669424899999999999864899729999996677987--8468999999999871----898899997504
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVCSRL----RIAHSVVSWKNS   92 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~--~s~~e~~~v~~~~~~l----gi~~~~~~~~~~   92 (423)
                      ..|+++.+|||.||.+.++++..    +   +.+|.++|.+++.-.  ++.+-+....+...++    .+++++......
T Consensus         3 ~gk~l~LlSGGiDSpVAa~lmmk----R---G~~V~~vhf~~~p~~~~~~~~k~~~l~~~l~~y~~~~~~~l~vv~~~~~   75 (197)
T pfam02568         3 QGKVLALLSGGIDSPVAAYLMMR----R---GCRVVALHFINEPGTSEEAIEKVRKLAELLAEYGTSCEGKLVVVDFTKV   75 (197)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf             77189886687129999999998----7---9979999987999998999999999999999737887544999574999


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -------7877803788854555543200123442012345666566899998623654443322357641003579687
Q gi|254780546|r   93 -------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI  165 (423)
Q Consensus        93 -------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i  165 (423)
                             .+.....-.+|+.-|+.....+++.++..++||..++..+-..+-++.           .    ....-+..+
T Consensus        76 ~~~i~~~~~~~~~cv~cKr~M~r~A~~iA~~~ga~~IVTGEsLGQVaSQTl~nl~-----------~----i~~~~~~pi  140 (197)
T pfam02568        76 QKEIIEKAPEKYRCVLCKRCMYRAAEKVAEEEGADALVTGESLGQVASQTLDNLR-----------V----ISAATNLPI  140 (197)
T ss_pred             HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCHHH-----------H----HHHHHCCCC
T ss_conf             9999962898765456999999999999998499899847303121004531069-----------9----987624853


Q ss_pred             ECCHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             10121042899999899818932026
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQRNISWCED  191 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~~i~wveD  191 (423)
                      +|||+++.|+||++.+++.|.-.+..
T Consensus       141 lRPLig~DK~EIi~~Ar~IGt~~~s~  166 (197)
T pfam02568       141 LRPLIGLDKEEIINLAKEIGTYEISI  166 (197)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCHHHHC
T ss_conf             13434699999999999948677662


No 25 
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.01  E-value=5.2e-09  Score=82.76  Aligned_cols=161  Identities=20%  Similarity=0.237  Sum_probs=108.5

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECC
Q ss_conf             852799839999669424899999999999864899729999996677987846899999999987-1898899997504
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-LRIAHSVVSWKNS   92 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~-lgi~~~~~~~~~~   92 (423)
                      +.-.+..++++|+|||+||++.+.|++....      -++..+.|||||--  ..|.+.|.+...+ +|++...+.-...
T Consensus        16 r~~vg~~kvi~alSGGVDSsv~a~L~~~AiG------d~l~cvfVD~GLlR--~~E~e~V~~~f~~~~~~nl~~VdA~~~   87 (315)
T COG0519          16 REQVGDGKVILALSGGVDSSVAAVLAHRAIG------DQLTCVFVDHGLLR--KGEAEQVVEMFREHLGLNLIVVDAKDR   87 (315)
T ss_pred             HHHHCCCEEEEEECCCCCHHHHHHHHHHHHH------CCEEEEEECCCCCC--CCCHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             9972885399983387808999999999740------52489996377434--785699999987532984599754988


Q ss_pred             C----CCCCCHHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             7----877803788----85455554320012344201234566656689999862365444332235764100357968
Q gi|254780546|r   93 K----PQTGLMAAA----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW  164 (423)
Q Consensus        93 ~----~~~~~~~~a----r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~  164 (423)
                      .    .+-.-.+.-    .+.....+.+.+++.++.+++.|...-|.+|+.   .-.+..++.-.=.|.   .+..-...
T Consensus        88 Fl~~L~GvtDPE~KRKiIG~~Fi~VFe~ea~k~~~~~LaQGTiYpDvIES~---~g~~~~IKSHHNVGG---LP~~m~lk  161 (315)
T COG0519          88 FLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESG---TGKAGTIKSHHNVGG---LPEDMKLK  161 (315)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEC---CCCCCCCCCCCCCCC---CCCCCCEE
T ss_conf             998843999889989998799999999999857860687044345046506---888886213562688---95014222


Q ss_pred             EECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf             710121042899999899818932
Q gi|254780546|r  165 ISRPFLRCRREDIRSFLLQRNISW  188 (423)
Q Consensus       165 i~RPLL~~~r~~l~~~~~~~~i~w  188 (423)
                      ++-||-.+-|+|+|...++.|++-
T Consensus       162 LvEPLr~LfKDEVR~lg~~LGlp~  185 (315)
T COG0519         162 LVEPLRELFKDEVRELGRELGLPE  185 (315)
T ss_pred             EEHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             307789886899999999859988


No 26 
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.01  E-value=6.1e-09  Score=82.27  Aligned_cols=150  Identities=16%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC---
Q ss_conf             98399996694248999999999998648997299999966779878468999999999871898899997504787---
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---   95 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~---   95 (423)
                      +.|-+|=+|||.||+++|+.+++-       ..+|+++|+|+|-|.  ..|.+.++.+|+.+||+++++.++....-   
T Consensus         2 ~~kavvl~SGG~DStt~l~~a~~~-------~~ev~alsfdYGQrh--~~Ele~A~~iak~lgv~~~iid~~~~~~~~~s   72 (222)
T COG0603           2 MKKAVVLLSGGLDSTTCLAWAKKE-------GYEVHALTFDYGQRH--RKELEAAKELAKKLGVPHHIIDVDLLGEIGGS   72 (222)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEECHHHHHHCCCC
T ss_conf             834999916881389999999960-------988999975078986--89999999999981998289541687535888


Q ss_pred             ---CC---CH------H-------HHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCCC
Q ss_conf             ---78---03------7-------88854-55554320012344201234566656------689999862365444332
Q gi|254780546|r   96 ---TG---LM------A-------AAREA-RYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGMG  149 (423)
Q Consensus        96 ---~~---~~------~-------~ar~~-r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~~  149 (423)
                         .+   +.      +       .+|-. -.......+...++..+.+|-|..|.      ...|...+....     .
T Consensus        73 aLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~-----~  147 (222)
T COG0603          73 ALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEAL-----N  147 (222)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH-----H
T ss_conf             67588863666666666686447606609999999999987599859997532104789988889999999999-----8


Q ss_pred             CCCCCCCCCCCCCCE-EECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             235764100357968-7101210428999998998189320
Q gi|254780546|r  150 LSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       150 l~~~~~~~~~~~~~~-i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      + ++.      .++. +.-||...+|++|.....+.|.++-
T Consensus       148 l-~~~------~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~  181 (222)
T COG0603         148 L-GTE------KGVRIIHAPLMELTKAEIVKLADELGVPLE  181 (222)
T ss_pred             H-HCC------CCCCEEECCEEECCHHHHHHHHHHHCCCCH
T ss_conf             6-255------786177678331349999998888688510


No 27 
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.99  E-value=5.5e-09  Score=82.58  Aligned_cols=136  Identities=16%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
Q ss_conf             39999669424899999999999864899729999996677987846899999999987189889999750478778037
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA  100 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~  100 (423)
                      |.+|=+|||.||+++|+.+.+    .   ..+++++++|+|-|.  ..|.+..+.+|+.+|-.-.     +  |..|.--
T Consensus         1 kavvllSGGlDSt~~l~~~~~----~---g~~v~~l~~dYGQr~--~~E~~~a~~i~~~l~~~~~-----V--P~RN~if   64 (169)
T cd01995           1 KAVVLLSGGLDSTTCLAWAKK----E---GYEVHALSFDYGQRH--AKEEEAAKLIAEKLGPSTY-----V--PARNLIF   64 (169)
T ss_pred             CEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEEECCCCH--HHHHHHHHHHHHHHCCCCE-----E--CCCHHHH
T ss_conf             989990787889999999998----4---996999997569854--9999999999999689946-----5--2838999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCH
Q ss_conf             8885455554320012344201234566656------6899998623654443322357641003579687101210428
Q gi|254780546|r  101 AAREARYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR  174 (423)
Q Consensus       101 ~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r  174 (423)
                            .......+...++..+.+|-|.+|.      ...|+-.+...-.            .....+++|.-||+..+|
T Consensus        65 ------ls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~------------~~~~~~v~i~aP~~~~~K  126 (169)
T cd01995          65 ------LSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALN------------LGTENGIKIHAPLIDLSK  126 (169)
T ss_pred             ------HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH------------HCCCCCCEEEECCCCCCH
T ss_conf             ------99999999982999689998247756899986999999999998------------308798589843335989


Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             9999989981893202
Q gi|254780546|r  175 EDIRSFLLQRNISWCE  190 (423)
Q Consensus       175 ~~l~~~~~~~~i~wve  190 (423)
                      .||...+.+.|++|-.
T Consensus       127 ~eiv~~g~~lgv~~~~  142 (169)
T cd01995         127 AEIVRLGGELGVPLEL  142 (169)
T ss_pred             HHHHHHHHHCCCCHHH
T ss_conf             9999999884997998


No 28 
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.98  E-value=4.9e-09  Score=82.91  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC-----
Q ss_conf             839999669424899999999999864899729999996677987846899999999987189-88999975047-----
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK-----   93 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~-----   93 (423)
                      .|.+|-+|||.||+++|+.+.+    .   ..+++++++|+|-|.  ..|.+..+++|+.+|+ +|.++..+...     
T Consensus         2 kkavVLlSGGlDStt~L~~a~~----~---~~~v~alsfdYGQrh--~~El~~A~~ia~~~gv~~h~vidl~~l~~~~~S   72 (231)
T PRK11106          2 KRAVVVFSGGQDSTTCLIQALQ----Q---YDEVHCITFDYGQRH--RAEIDVARELALKLGARAHKVLDVTLLNELAVS   72 (231)
T ss_pred             CEEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEEECCCCC--HHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCC
T ss_conf             8089990787899999999998----1---994999987778671--999999999999859840067532777775235


Q ss_pred             ---------CCCCCHH--------HHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCCC
Q ss_conf             ---------8778037--------88854-55554320012344201234566656------689999862365444332
Q gi|254780546|r   94 ---------PQTGLMA--------AAREA-RYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGMG  149 (423)
Q Consensus        94 ---------~~~~~~~--------~ar~~-r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~~  149 (423)
                               +....++        ..|-. .....+..+...++..+.+|-|..|.      -..|+..+......    
T Consensus        73 aLt~~~i~vp~~~~~~~~~p~T~VP~RN~ifLsiAaa~Ae~~ga~~I~~G~~~~D~sgYPDCr~eFi~a~~~al~~----  148 (231)
T PRK11106         73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVVL----  148 (231)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----
T ss_conf             6677787777765444578764671672999999999999859995998046556688998989999999999985----


Q ss_pred             CCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHH---HHCCCC
Q ss_conf             235764100357968710121042899999899---818932
Q gi|254780546|r  150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL---QRNISW  188 (423)
Q Consensus       150 l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~---~~~i~w  188 (423)
                        +      ....++|.-||++++|+||....+   +.+++|
T Consensus       149 --g------~~~~i~i~aPl~~l~K~eiv~l~~~~~~L~~p~  182 (231)
T PRK11106        149 --G------MAKDIRFETPLMWLDKAETWALADYYGQLDLVR  182 (231)
T ss_pred             --C------CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             --1------789819983777788889999998616668650


No 29 
>pfam06508 ExsB ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea.
Probab=98.95  E-value=3e-09  Score=84.47  Aligned_cols=102  Identities=21%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----
Q ss_conf             3999966942489999999999986489972999999667798784689999999998718988999975047877----
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----   96 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~----   96 (423)
                      |++|.+|||.||+++|+.+++    .   ..+++++|+|+|.|.  ..|.+..+++|+.+|++|+++..+..+.-.    
T Consensus         1 Kavvl~SGG~DSt~~l~~a~~----~---~~~v~ait~dYGQ~~--~~Ei~~A~~ia~~l~i~h~vidl~~l~~~~~saL   71 (137)
T pfam06508         1 KAVVLLSGGLDSTTCLAWAKK----E---GYEVYALTFDYGQRH--SKELECAKKIAKALGVEHKIVDLDFLKQIGGSAL   71 (137)
T ss_pred             CEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEECCCCCH--HHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCC
T ss_conf             989991787899999999998----6---996899981478873--9999999999998299750303302444165522


Q ss_pred             -----CC-----HH--------HHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             -----80-----37--------88854-55554320012344201234566656
Q gi|254780546|r   97 -----GL-----MA--------AAREA-RYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        97 -----~~-----~~--------~ar~~-r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                           .+     +.        ..|-. -.......+...++..+.+|-|.+|.
T Consensus        72 ~~~~~~vp~~~~~~~~~~~t~VP~RN~iflsiA~a~A~~~g~~~I~~G~~~~D~  125 (137)
T pfam06508        72 TDDSIEVPDSELESEEIPNTYVPGRNLIFLSIAASYAEAIGANDIFIGVNEEDF  125 (137)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             368855566543456787765636549999999999998699979995655756


No 30 
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=98.91  E-value=6.3e-09  Score=82.15  Aligned_cols=168  Identities=17%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-----CCC-------------CCCCHHHHHHHHHHHHHHCC
Q ss_conf             839999669424899999999999864899729999996-----677-------------98784689999999998718
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHC-------------LRETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v-----dHg-------------lr~~s~~e~~~v~~~~~~lg   81 (423)
                      .+|+|++|||+||++-+++|++-       ..+|.-+..     +-.             -..-+.++...++++|+.||
T Consensus         1 ~kv~VglSGGVDSSVsA~lL~~q-------g~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LG   73 (394)
T TIGR00420         1 KKVIVGLSGGVDSSVSAYLLKQQ-------GYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLG   73 (394)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             94899806854789999999714-------96589998776512466664431656246778836887999999998559


Q ss_pred             CCEEEEEEE-----------------CCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHH-HHHHHHH--
Q ss_conf             988999975-----------------047877803788854555543200123---44201234566656-6899998--
Q gi|254780546|r   82 IAHSVVSWK-----------------NSKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQ-LETVYMR--  138 (423)
Q Consensus        82 i~~~~~~~~-----------------~~~~~~~~~~~ar~~r~~~~~~~~~~~---~~~~l~~ah~~dD~-~Et~l~r--  138 (423)
                      ||++++...                 +..|.+.+... +......+.+.+.+.   ++..++|||-+-=+ ...---+  
T Consensus        74 i~l~~~nf~~~Y~~~Vf~~~i~~y~~G~TPnPDi~CN-~~iKFG~~~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~  152 (394)
T TIGR00420        74 IPLEKVNFQKEYWNKVFEPFIQEYKEGLTPNPDILCN-KLIKFGLLLEYAKQLLGTGNDKIATGHYARIAQEIENKSLFE  152 (394)
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHH
T ss_conf             8189855078878888899999873677778620047-120037899999985289954344244765443421310144


Q ss_pred             HHCCCCC--CC-CCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC--CCCCC-CCCCCCCCC
Q ss_conf             6236544--43-32235764100357968710121042899999899818--93202-667864221
Q gi|254780546|r  139 SQRDYAE--KG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN--ISWCE-DPSNTDDRF  199 (423)
Q Consensus       139 l~r~sg~--~g-~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~--i~wve-DpSN~d~~f  199 (423)
                      |.++---  +. --|+.+......    .++=||-++.|.++|+.|++.+  ++--| -+--++.+|
T Consensus       153 L~~~~D~~KDQSYFL~~l~~~~~~----~~~FPlG~L~K~~vR~iA~~~~PfL~ta~tkKDSqgICF  215 (394)
T TIGR00420       153 LLRALDKNKDQSYFLYHLSQEQLA----KLLFPLGELLKPEVRQIAKNAGPFLSTAETKKDSQGICF  215 (394)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHH----HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             430467888611737640189888----750530103677899999864863234456886445021


No 31 
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479   This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome.    In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , .    In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance .   The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=98.84  E-value=2.6e-08  Score=77.75  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=103.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE-EEEEECCC--------
Q ss_conf             999669424899999999999864899729999996677987846899999999987189889-99975047--------
Q gi|254780546|r   23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS-VVSWKNSK--------   93 (423)
Q Consensus        23 ~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~-~~~~~~~~--------   93 (423)
                      +|-+|||.||++++..+++-     +.+++|+++|.|+|-|.. ..|.+..+++|+.|||+++ ++..+..+        
T Consensus         2 v~~lSGG~DStT~~~~a~~~-----~GkyeV~a~TF~YGQR~H-~~Ele~A~~ia~~Lgi~~~~~~Dl~~l~~l~~YsaL   75 (227)
T TIGR00364         2 VVVLSGGQDSTTVLLIALDE-----GGKYEVHAITFDYGQRAH-SRELESARKIAEALGIRHHFVIDLSLLKQLGKYSAL   75 (227)
T ss_pred             EEEEECCHHHHHHHHHHHHC-----CCCEEEEEECCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCC
T ss_conf             68743734689999999961-----795079985465013789-999999999999808970786177999855404523


Q ss_pred             --------CCCCCHH------HHHH--------HHHHHHHHHCCCCCCCCHHHHHHHHH------HHHHHHHHHHCCCCC
Q ss_conf             --------8778037------8885--------45555432001234420123456665------668999986236544
Q gi|254780546|r   94 --------PQTGLMA------AARE--------ARYALISEHAKTINATLIMTAHTFDD------QLETVYMRSQRDYAE  145 (423)
Q Consensus        94 --------~~~~~~~------~ar~--------~r~~~~~~~~~~~~~~~l~~ah~~dD------~~Et~l~rl~r~sg~  145 (423)
                              ...+.+.      ..+.        ....+....+...|+..+.+|-+..|      .-+.|+--+..-   
T Consensus        76 t~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n~~---  152 (227)
T TIGR00364        76 TDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALNHA---  152 (227)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH---
T ss_conf             57875676666532023565311333378047999999999888618425220010003657988868899999999---


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC
Q ss_conf             4332235764100357968710121042899999899818
Q gi|254780546|r  146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN  185 (423)
Q Consensus       146 ~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~  185 (423)
                        +.|+.|... .....+++.=||..++|+||-+.+.+.|
T Consensus       153 --l~Lgn~~~~-v~i~Piql~aPL~~ltKaeiv~la~elG  189 (227)
T TIGR00364       153 --LNLGNMLTP-VEIRPIQLEAPLMDLTKAEIVKLADELG  189 (227)
T ss_pred             --HHHHCCCCC-CEEEEEEEECCEEECCHHHHHHHHHHHC
T ss_conf             --997412688-1120246666701269899999988735


No 32 
>PRK08349 hypothetical protein; Validated
Probab=98.78  E-value=1.6e-07  Score=72.26  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=94.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC-CC---CEEEEEEECC----
Q ss_conf             399996694248999999999998648997299999966779878468999999999871-89---8899997504----
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-RI---AHSVVSWKNS----   92 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~l-gi---~~~~~~~~~~----   92 (423)
                      |+++-+|||.||.+-.+++..    +   +.++..+|+|.+  +.+.+.+..+.+...++ |-   .+++......    
T Consensus         2 Kvl~LlSGGiDSPVAa~~mmK----R---G~~V~~lhf~~~--~~~~~kv~~~~~~L~~~~~~~~~~~~iv~~~~~~~~i   72 (198)
T PRK08349          2 KVVALLSSGIDSPVAIYLMLS----R---GVEIYPLHFRQD--EKKEHKARELVEILQEIHGGKVKDPVIVDAYEVQGPV   72 (198)
T ss_pred             EEEEEECCCCCHHHHHHHHHH----C---CCEEEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf             499996588438999999997----7---997999986387--7889999999999999708887528997722532899


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -------7877803788854555543200123442012345666566899998623654443322357641003579687
Q gi|254780546|r   93 -------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI  165 (423)
Q Consensus        93 -------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i  165 (423)
                             .+.....--.|+.-|+.....+++.++..++||..++..+-..+-++.--+.               .-+..+
T Consensus        73 ~~~i~~~~~~~~~~vl~rr~M~riA~~iA~~~g~~aivTGEsLGQVASQTl~NL~~i~~---------------~~~~pV  137 (198)
T PRK08349         73 FEKLREIGKEKWTCLFCKYTMYRVAERYAHEIGAKAIVTGDSLGQVASQTLDNLMVIST---------------ATDLPI  137 (198)
T ss_pred             HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHH---------------HHCCCC
T ss_conf             99998607765130999999999999999985998898452167888999988999987---------------506766


Q ss_pred             ECCHHCCCHHHHHHHHHHHCC
Q ss_conf             101210428999998998189
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~~i  186 (423)
                      +|||+++.|+||.+++++.|.
T Consensus       138 lRPLig~DK~EII~~Ar~IGT  158 (198)
T PRK08349        138 LRPLIGLDKEEIVRIAKEIGT  158 (198)
T ss_pred             CCCCCCCCHHHHHHHHHHHCC
T ss_conf             477667998999999998195


No 33 
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.75  E-value=1.6e-07  Score=72.30  Aligned_cols=157  Identities=17%  Similarity=0.244  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             89999999985279983999966942489999999999986489972999999667798784689999999998718988
Q gi|254780546|r    5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH   84 (423)
Q Consensus         5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~   84 (423)
                      |...++-....+..+  +++++|||+||+++||++.....       .+.++|||.|..-  .+-.+++.++.+++|++.
T Consensus        27 ~~~i~~~~~~~~~~~--~~~~~S~Gkds~V~l~L~~k~~~-------~~~vif~DTg~~f--~Et~~~~d~~~~~~~~~l   95 (261)
T COG0175          27 PIEILRWAAEEFSNP--VVVSFSGGKDSTVLLHLAAKAFP-------DFPVIFLDTGYHF--PETYEFRDRLAEEYGLDL   95 (261)
T ss_pred             HHHHHHHHHHHCCCC--EEEEECCCHHHHHHHHHHHHHCC-------CCCEEEEECCCCC--HHHHHHHHHHHHHCCCEE
T ss_conf             899999999874897--59981274679999999986025-------8718997077757--889999999998729717


Q ss_pred             EEEEEECCCCCC-----CCHH--HHH-HH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999975047877-----8037--888-54---555543200123442012345666566899998623654443322357
Q gi|254780546|r   85 SVVSWKNSKPQT-----GLMA--AAR-EA---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        85 ~~~~~~~~~~~~-----~~~~--~ar-~~---r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~  153 (423)
                      .+.+-+......     +.-.  ..| ++   .-.-+.......+...+++|.=.|+..                .-+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~----------------~Rak~  159 (261)
T COG0175          96 KVYRPDDEVAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP----------------TRAKL  159 (261)
T ss_pred             EEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----------------CCCCC
T ss_conf             98167323443442136679997402332568551399999635862499861204563----------------20248


Q ss_pred             CCCCCCCC---CCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             64100357---9687101210428999998998189320
Q gi|254780546|r  154 CDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       154 ~~~~~~~~---~~~i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                       +......   +..-+=||++++..++-.|...+++++.
T Consensus       160 -~~~~~~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~n  197 (261)
T COG0175         160 -PVVSFDSEFGESIRVNPLADWTELDVWLYILANNLPYN  197 (261)
T ss_pred             -CEECCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
T ss_conf             -64534678768368715320999999999999589988


No 34 
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.73  E-value=3.1e-07  Score=70.20  Aligned_cols=143  Identities=22%  Similarity=0.158  Sum_probs=93.1

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC---
Q ss_conf             9983999966942489999999999986489972-999999667798784689999999998718988999975047---
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---   93 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~-~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~---   93 (423)
                      .+.||++|+|||.|+++.+..|++-      .++ +|+++++|-|- +  ++|.+.+++.+..+|++++++......   
T Consensus         2 ~~kKVvLAySGGLDTSv~l~wL~e~------yg~~eVi~~~~d~Gq-~--~e~~~~~~~kA~~~G~~~~viD~r~ef~~~   72 (395)
T PRK13820          2 MKKKVVLAYSGGLDTSVCIPLLKEK------YGYDEVITVAVDVGQ-P--EEEIKEAEEKAKKLGVKHYTIDAKEEFAKD   72 (395)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHH------CCCCEEEEEEEECCC-C--HHHHHHHHHHHHHCCCCEEEEECHHHHHHH
T ss_conf             9872999968984899999999985------199869999998999-7--677699999999709949998169999999


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             -------------8778037888545555432001234420123456--6656689999862365444332235764100
Q gi|254780546|r   94 -------------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTIL  158 (423)
Q Consensus        94 -------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~  158 (423)
                                   .=....+.+|-.-...+.+.+++.++..++-|-+  -+||+--.+ - ++.                
T Consensus        73 ~i~paI~ana~YegYpL~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGNDQvRFe~-~-~~a----------------  134 (395)
T PRK13820         73 YIFPAIKANALYEGYPLGTALARPLIAKKIVEVAKKEGASAIAHGCTGKGNDQLRFEA-V-FRA----------------  134 (395)
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-H-HHC----------------
T ss_conf             9999997087326730324104689999999999975982983077789870999999-9-867----------------


Q ss_pred             CCCCCEEECCH--HCCCHHHHHHHHHHHCCCCC
Q ss_conf             35796871012--10428999998998189320
Q gi|254780546|r  159 YDLNLWISRPF--LRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       159 ~~~~~~i~RPL--L~~~r~~l~~~~~~~~i~wv  189 (423)
                        -++.++-|.  ..++|++..+||+++||+.-
T Consensus       135 --p~~~iiaP~R~~~~~R~~~i~ya~~~gI~v~  165 (395)
T PRK13820        135 --TDLDVIAPIRELNLTREWEIEYAKEHGIPVP  165 (395)
T ss_pred             --CCCEEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf             --8986872104533458999999998599888


No 35 
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.72  E-value=4.9e-07  Score=68.76  Aligned_cols=141  Identities=18%  Similarity=0.145  Sum_probs=94.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC----
Q ss_conf             9839999669424899999999999864899729999996677987846899999999987189-88999975047----
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK----   93 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~----   93 (423)
                      ..||++|+|||.|+++.+..|++-      .+++|+++++|-|-    .+|.+.+++.+.++|. +++++......    
T Consensus         2 ~kKVvLAySGGLDTSv~l~wL~e~------yg~eVia~~~d~Gq----~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~   71 (398)
T PRK00509          2 VKKVVLAYSGGLDTSVIIKWLKEE------YGCEVVAFTADVGQ----GEELEPIREKALASGASEIYVEDLREEFVRDY   71 (398)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHH------CCCEEEEEEEECCC----HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             854999908984599999999875------39889999997988----77889999999982997899963099999999


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             -------------87780378885455554320012344201234566----6566899998623654443322357641
Q gi|254780546|r   94 -------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDT  156 (423)
Q Consensus        94 -------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~----dD~~Et~l~rl~r~sg~~g~~l~~~~~~  156 (423)
                                   .-.-.-+.+|-.-...+.+.+++.++..+  +|-.    +||+--.+.  +     .     .+.  
T Consensus        72 i~p~I~ana~Yeg~YpL~tslaRplia~~~ve~A~~~ga~ai--aHG~TGkGNDQvRFe~~--~-----~-----aL~--  135 (398)
T PRK00509         72 VFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAV--AHGCTGKGNDQVRFELA--I-----A-----ALA--  135 (398)
T ss_pred             HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEE--EECCCCCCCCHHHHHHH--H-----H-----HHC--
T ss_conf             999996085455854552203188999999999997198599--85455678608999999--9-----9-----859--


Q ss_pred             CCCCCCCEEECCHHC---CCHHHHHHHHHHHCCCCC
Q ss_conf             003579687101210---428999998998189320
Q gi|254780546|r  157 ILYDLNLWISRPFLR---CRREDIRSFLLQRNISWC  189 (423)
Q Consensus       157 ~~~~~~~~i~RPLL~---~~r~~l~~~~~~~~i~wv  189 (423)
                          .++.++-|.-.   .+|++..+||+++||+.-
T Consensus       136 ----P~l~iiaP~Rd~~~~sR~~~i~ya~~~gIpv~  167 (398)
T PRK00509        136 ----PDLKVIAPWREWDLMSREELIAYAEEHGIPIP  167 (398)
T ss_pred             ----CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             ----99768611321341689999999998699888


No 36 
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily  including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which  binds to Adenosine group..
Probab=98.69  E-value=5.8e-08  Score=75.36  Aligned_cols=83  Identities=28%  Similarity=0.277  Sum_probs=64.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
Q ss_conf             99996694248999999999998648997299999966779878468999999999871898899997504787780378
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA  101 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~  101 (423)
                      ++|++|||+||+..+++++++       .+++.++++|||..+......+.+++                          
T Consensus         1 ~~v~~sgG~ds~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~--------------------------   47 (103)
T cd01986           1 VLVAFSGGKDSSVAAALLKKL-------GYQVIAVTVDHGISPRLEDAKEIAKE--------------------------   47 (103)
T ss_pred             CEEEECCCCHHHHHHHHHHHC-------CCCEEEEEEECCCCCHHHHHHHHHHH--------------------------
T ss_conf             989742882219999999986-------98628999853766278899999999--------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             885455554320012344201234566656689999862
Q gi|254780546|r  102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ  140 (423)
Q Consensus       102 ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~  140 (423)
                         .+...+...+.+.++..+++||..+|...+......
T Consensus        48 ---~~~~~~~~~a~~~~~~~i~~G~~~~~~~~~~~~~~~   83 (103)
T cd01986          48 ---AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA   83 (103)
T ss_pred             ---HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf             ---999999999886172143047531677887761898


No 37 
>PRK05370 argininosuccinate synthase; Validated
Probab=98.69  E-value=4.7e-07  Score=68.92  Aligned_cols=152  Identities=14%  Similarity=0.178  Sum_probs=93.3

Q ss_pred             HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEE
Q ss_conf             99985279983999966942489999999999986489972999999667798784689999999998718988-99997
Q gi|254780546|r   11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH-SVVSW   89 (423)
Q Consensus        11 ~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~-~~~~~   89 (423)
                      +-+++++.+.||++|+|||.|+++.+..|++    .   +.+|+++++|-|--.  ..+.+.+++.+.++|..- +++..
T Consensus         3 ~~~~~~~~gkKVvLAYSGGLDTSv~l~wL~e----~---g~eVia~taDvGQ~d--e~d~~~i~~kA~~~GA~k~~v~D~   73 (447)
T PRK05370          3 TILKHLPVGQRVGIAFSGGLDTSAALLWMRQ----K---GAVPYAYTANLGQPD--EDDYDAIPRRAMEYGAENARLIDC   73 (447)
T ss_pred             HHHHCCCCCCEEEEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             3530587888899995898279999999987----5---987999999799986--133899999999829978999717


Q ss_pred             ECCCCC--------------------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             504787--------------------7803788854555543200123442012345--666566899998623654443
Q gi|254780546|r   90 KNSKPQ--------------------TGLMAAAREARYALISEHAKTINATLIMTAH--TFDDQLETVYMRSQRDYAEKG  147 (423)
Q Consensus        90 ~~~~~~--------------------~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah--~~dD~~Et~l~rl~r~sg~~g  147 (423)
                      ....-.                    .+.-..+|-.-...+.+.+++.++..++-|-  --+||+-     +.+.    +
T Consensus        74 reefv~~~i~ai~a~A~y~~~~g~~Y~l~t~laRplia~~lv~~a~~~ga~~iaHGaTGKGNDQVR-----Fe~~----~  144 (447)
T PRK05370         74 RAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIER-----FYRY----G  144 (447)
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH-----HHHH----H
T ss_conf             999999999999736233302576445877307889999999999983998995577678743889-----9999----9


Q ss_pred             CCCCCCCCCCCCCCCCEEECCHHCC-------CHHHHHHHHHHHCCCCC
Q ss_conf             3223576410035796871012104-------28999998998189320
Q gi|254780546|r  148 MGLSGMCDTILYDLNLWISRPFLRC-------RREDIRSFLLQRNISWC  189 (423)
Q Consensus       148 ~~l~~~~~~~~~~~~~~i~RPLL~~-------~r~~l~~~~~~~~i~wv  189 (423)
                               .....++.|+-|....       +|+++.+||+++||++-
T Consensus       145 ---------~~l~P~lkIiaPwRd~~f~~el~sR~e~i~Ya~~~gIpv~  184 (447)
T PRK05370        145 ---------LLTNPELKIYKPWLDQDFIDELGGRAEMSEFMIACGFDYK  184 (447)
T ss_pred             ---------HHHCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             ---------8529987697143346666541574999999998499876


No 38 
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.68  E-value=4.8e-07  Score=68.87  Aligned_cols=169  Identities=12%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CC
Q ss_conf             27998399996694248999999999998648997299999966779878468999999999871898899997504-78
Q gi|254780546|r   16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KP   94 (423)
Q Consensus        16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~-~~   94 (423)
                      ...-++.++-+|||+||++||||+...-.- ..++  +-.+|||+|.--  .+=.+|..++++++|+.+.+-..+.. +.
T Consensus        23 ~a~f~~pvmL~S~GKDS~VmLhLarKAF~p-~~iP--fPllHIDTg~kF--~Emi~fRD~~a~e~gl~LiV~~n~e~i~~   97 (300)
T PRK05253         23 AAEFENPVMLYSIGKDSSVMLHLARKAFYP-GKLP--FPLLHVDTGWKF--PEMIEFRDRRAKELGLELIVHSNPEGIAR   97 (300)
T ss_pred             HHHHCCCEEEEECCCHHHHHHHHHHHHHCC-CCCC--CCEEEEECCCCH--HHHHHHHHHHHHHHCCCEEEEECHHHHHC
T ss_conf             997369679871672599999999998578-8999--634883079981--89999999999984997899757677756


Q ss_pred             CCCC-----HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCC--C----CCCCCCCCCC-CC
Q ss_conf             7780-----378885455554320012344201234566656689999862--3654443--3----2235764100-35
Q gi|254780546|r   95 QTGL-----MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ--RDYAEKG--M----GLSGMCDTIL-YD  160 (423)
Q Consensus        95 ~~~~-----~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~--r~sg~~g--~----~l~~~~~~~~-~~  160 (423)
                      +.+.     ..-.....-..|.....+.+.+.++.|--.|.+.-----|.+  |.....+  .    .++.+.+... .+
T Consensus        98 g~~p~~~g~~~~~~~lKT~~L~~al~~~~fda~~gGaRRDEe~sRAKERiFS~R~~~~~Wdpk~QrPElW~lyn~~~~~g  177 (300)
T PRK05253         98 GINPFTHGSAKHTNIMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQWDPKNQRPELWNLYNGRINKG  177 (300)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf             99956688222315787899999999648765651012344321212542477564688885669802667635567999


Q ss_pred             CCCEEECCHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             796871012104289999989981893202
Q gi|254780546|r  161 LNLWISRPFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       161 ~~~~i~RPLL~~~r~~l~~~~~~~~i~wve  190 (423)
                      ..+++ =||++++.-+|=+|....+|+.+.
T Consensus       178 eh~RV-fPlsnWTElDIW~YI~~E~Ipi~~  206 (300)
T PRK05253        178 EHIRV-FPLSNWTELDIWQYIYRENIPIVP  206 (300)
T ss_pred             CEEEE-ECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             64775-112022577899999984888887


No 39 
>PRK08576 hypothetical protein; Provisional
Probab=98.66  E-value=2.2e-07  Score=71.30  Aligned_cols=170  Identities=15%  Similarity=0.132  Sum_probs=95.7

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99999985279983999966942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r    8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus         8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      +-.+|+.++... .|+|.+|||+||+|-|.++.+..       -++.|+.||.|+  |-.+-.++|+.+++++||+....
T Consensus       225 ~s~~fL~~~~~~-~iiVp~SGGKDStA~LlLA~ea~-------~dv~aVfvDTGl--EfPeT~eyVe~va~klGv~lv~a  294 (439)
T PRK08576        225 ASIEFLEKFGEY-TIIVPWSGGKDSTAALLLALKAF-------DEVTAVYVDTGY--EMPLTDEYVEKVAEKLGVDLIRA  294 (439)
T ss_pred             HHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHHHHH-------CCEEEEEEECCC--CCHHHHHHHHHHHHHHCCEEEEE
T ss_conf             999999962898-88995688779999999999861-------883699970798--65758999999999859769994


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCC-CCCCC---CCC
Q ss_conf             9750478778037888545555432001234420123456665668999986236544433223-576-41003---579
Q gi|254780546|r   88 SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS-GMC-DTILY---DLN  162 (423)
Q Consensus        88 ~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~-~~~-~~~~~---~~~  162 (423)
                      ..+...+-....-.++..|      ||......-+-  -...+..+..+   .-|.- ++.+.. .+. +....   .++
T Consensus       295 ~~d~~~~i~~~G~Pt~d~R------WCtk~KL~PL~--~~i~~~~~~l~---~vG~R-~~ES~~R~~~~~v~~rn~~vg~  362 (439)
T PRK08576        295 GVDVPMPIEGYGLPTHENR------WCTKMKVEALY--EAIRELSNPLL---VVGDR-DGESARRRLRPPVRERETDFGK  362 (439)
T ss_pred             CCCCCCHHCCCCCCCCCCC------CCCCCCCHHHH--HHHHHHCCCEE---EECCC-HHHHHHHHCCCCEEECCCCCCC
T ss_conf             7886422104799976663------31020025589--99996489769---95272-5654776118963550477777


Q ss_pred             CEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             68710121042899999899818932026678642210189997
Q gi|254780546|r  163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR  206 (423)
Q Consensus       163 ~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~  206 (423)
                      ..-+.|+..++..++-.|.-.+|+++       ||=|++-+-|-
T Consensus       363 ~~~~~PIk~Wsa~~VwLYI~~~gip~-------NPLY~kGF~RI  399 (439)
T PRK08576        363 ILVVMPLKFWSGAMVQLYILMNGIEL-------NPLYYEGFYRL  399 (439)
T ss_pred             CEEEECHHHCCHHHHHHHHHHCCCCC-------CHHHHCCCCCC
T ss_conf             26672343076999999999759999-------84787477324


No 40 
>pfam02540 NAD_synthase NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.
Probab=98.62  E-value=1.5e-06  Score=65.34  Aligned_cols=150  Identities=18%  Similarity=0.200  Sum_probs=88.4

Q ss_pred             HHHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999852---7998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r    7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA   83 (423)
Q Consensus         7 ~~~~~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~   83 (423)
                      +.+-.|++.-   .+-..++|++|||.||.+.+.++++...     +.++.++..-..  ..|.+..+..+.+|+.+||+
T Consensus         3 ~~i~~~l~dyv~k~g~~gvViGlSGGIDSav~a~La~~AlG-----~~~v~~v~mP~~--~ss~~s~~~A~~la~~lgi~   75 (243)
T pfam02540         3 ERLVDFLRDYVQKSGAKGVVLGLSGGIDSAVVAYLAVKALG-----KENVLALIMPSI--NSSEEDVQDALALAENLGIN   75 (243)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCC-----CCEEEEEECCCC--CCCHHHHHHHHHHHHHHCCC
T ss_conf             79999999999981999199978887999999999999559-----742899964777--89888999999999996892


Q ss_pred             EEEEEEECCC--------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             8999975047--------------87780378885455554320012344201234566656689999862365444332
Q gi|254780546|r   84 HSVVSWKNSK--------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG  149 (423)
Q Consensus        84 ~~~~~~~~~~--------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~  149 (423)
                      +.++..+..-              ..+|+++   +.|-..++..+...+..++-|+.                   ....
T Consensus        76 ~~~i~I~~~~~~~~~~~~~~~~~~a~~Ni~a---R~Rm~~ly~~A~~~~~lVlgT~N-------------------ksE~  133 (243)
T pfam02540        76 YKTIDIKPIVRAFSQLFQPAKDDLAKGNLKA---RIRMIILYAHANKFNRLVLGTGN-------------------KSEL  133 (243)
T ss_pred             EEEEECHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEECCC-------------------CCCE
T ss_conf             6999888999999988532013778745578---88899999862337918981687-------------------0420


Q ss_pred             CCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             23576410035796871012104289999989981893
Q gi|254780546|r  150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       150 l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                      ..|....  .+.+.-=+-|+-++.|.|+++.++..|+|
T Consensus       134 ~~Gy~Tk--yGD~~~di~Pi~dL~KteV~~la~~l~vP  169 (243)
T pfam02540       134 ALGYFTK--YGDGACDIAPIGDLYKTQVYELAKRLNVP  169 (243)
T ss_pred             EEEEEEE--CCCCCCCHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             0543231--27776551541688189999999994988


No 41 
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=98.58  E-value=7.3e-07  Score=67.56  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=103.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-------
Q ss_conf             8399996694248999999999998648997299999966779878468999999999871898899997504-------
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------   92 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~-------   92 (423)
                      =..+|+||||+||+-.||+++.-      .+++..+||+|+|+..  +.=.+..+++|+.+|++|...+.+..       
T Consensus        60 YDCiv~vSGGkDS~y~~~~l~~~------~gl~pL~vt~d~~~~t--~~g~~Ni~~l~~~lgvD~i~~~~n~~~~k~l~k  131 (343)
T TIGR03573        60 YDCIIGVSGGKDSTYQAHVLKKK------LGLNPLLVTVDPGWNT--ELGVKNLNNLIKKLGFDLHTITINPETFRKLQR  131 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHH------HCCCEEEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf             86898688772899999999998------2992599983598779--899999999998369985874699999999999


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCCC---------
Q ss_conf             ---787780378885455554320012344201234566656-------6899998623654443322357---------
Q gi|254780546|r   93 ---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ-------LETVYMRSQRDYAEKGMGLSGM---------  153 (423)
Q Consensus        93 ---~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~-------~Et~l~rl~r~sg~~g~~l~~~---------  153 (423)
                         ..-++..-..-.+-+......|.+.++..++.|++....       ............+.++..+..+         
T Consensus       132 ~~~~~~gd~~~~~~~~i~~~~~~iA~k~~IplIi~Gen~~~e~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (343)
T TIGR03573       132 AYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSEEELNPDEWKYNKRGIDAANIKDFSDKGLSERD  211 (343)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCHHH
T ss_conf             99986689469999999999999999819998997567010057755446672467888615552059999978998343


Q ss_pred             -CCCC------CCCCCCEEECCH--HCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             -6410------035796871012--104289999989981893202667
Q gi|254780546|r  154 -CDTI------LYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPS  193 (423)
Q Consensus       154 -~~~~------~~~~~~~i~RPL--L~~~r~~l~~~~~~~~i~wveDpS  193 (423)
                       .+..      ....+++.+.|+  ..+..++...++.+.. .|..+|.
T Consensus       212 L~~y~~p~~~~~~~~~i~~i~l~~y~~Wd~~~~~~~~~~~~-gw~~~~~  259 (343)
T TIGR03573       212 LYAYTYPDKEKLQSKGVKVIYLGYYVKWDKKKNYEFIKKRG-GWREGPH  259 (343)
T ss_pred             CHHCCCCCHHHHHHCCCEEEECCCHHCCCHHHHHHHHHHHC-CCCCCCC
T ss_conf             41046989899964495399644000348999999999963-9511888


No 42 
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.56  E-value=1e-06  Score=66.60  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=90.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECC-----
Q ss_conf             9839999669424899999999999864899729999996677987846899999999987189-8899997504-----
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNS-----   92 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~-----   92 (423)
                      ..||++|+|||.|+++.+..|++    .   +++++++++|-|--.  ++|.+.+++.+..+|. +++++.....     
T Consensus         3 ~kkVvLAySGGLDTSv~l~wL~e----~---g~~Vi~~~ad~G~~~--~e~~~~i~~kA~~~GA~~~~v~D~~~ef~~~~   73 (397)
T PRK04527          3 TKDIVLAFSGGLDTSFCIPYLQE----R---GYAVHTVFADTGGVD--AEERDFIEKRAAELGAASHVTVDGGPAIWEGF   73 (397)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHH----C---CCCEEEEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             87599990897289999999987----5---994799999789986--15157899999981997799972899999999


Q ss_pred             -----C------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----7------8778037888545555432001234420123456--66566899998623654443322357641003
Q gi|254780546|r   93 -----K------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILY  159 (423)
Q Consensus        93 -----~------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~  159 (423)
                           +      ..--+...+|-.-...+.+.+++.++..++-|-+  -+||+--. +....      +           
T Consensus        74 v~~~i~ana~Yeg~YpL~tsaRplIak~~ve~A~~~ga~~iaHG~TGkGNDQvRFe-~~~~a------l-----------  135 (397)
T PRK04527         74 VKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFD-LAVKA------L-----------  135 (397)
T ss_pred             HHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH-HHHHH------C-----------
T ss_conf             99998606454185556321079999999999997298384047666787025677-68886------3-----------


Q ss_pred             CCCCEEECCHH------CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             57968710121------04289999989981893202667
Q gi|254780546|r  160 DLNLWISRPFL------RCRREDIRSFLLQRNISWCEDPS  193 (423)
Q Consensus       160 ~~~~~i~RPLL------~~~r~~l~~~~~~~~i~wveDpS  193 (423)
                       .++.++-|.-      ..+|++..+||+++||+.-.++.
T Consensus       136 -~~~~viAP~R~~~~~~~~~R~~~~~ya~~~gipv~~~~k  174 (397)
T PRK04527        136 -GDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQK  174 (397)
T ss_pred             -CCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             -676543655653102220299999767864999887778


No 43 
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=98.56  E-value=4.4e-06  Score=62.06  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             76989999999985279983999966942489999999999986489972999999667798784689999999998718
Q gi|254780546|r    2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus         2 ~~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg   81 (423)
                      ..+|.+.++..+..+  +.+++++-|-|++|++|||++.+.       ...+-++.||.|.-.  .+--++..++.+.+|
T Consensus        26 ~~~p~eil~wa~~~~--~~~~~~tsSFG~es~Vllhli~~~-------~~~ipV~flDTG~~f--~ETy~~~d~l~~~~~   94 (243)
T PRK02090         26 KASAQERLAWALEEF--GGGLALASSFGAESAVLLHLVAQV-------DPDIPVIFLDTGYLF--PETYRFIDQLTERLL   94 (243)
T ss_pred             CCCHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHH-------CCCCCEEEEECCCCC--HHHHHHHHHHHHHHC
T ss_conf             799999999999975--997699945867899999999941-------999967986579888--899999999999979


Q ss_pred             CCEEEEEEECCC-----CCCCC-----HHHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             988999975047-----87780-----378885455---55432001234420123456665668999986236544433
Q gi|254780546|r   82 IAHSVVSWKNSK-----PQTGL-----MAAAREARY---ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM  148 (423)
Q Consensus        82 i~~~~~~~~~~~-----~~~~~-----~~~ar~~r~---~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~  148 (423)
                      ++.++..-+...     ..+++     ...-.++..   .-+.......  ...+||.-.+. ..               
T Consensus        95 l~i~~~~P~~~~~~~~~~~g~l~~~~~~d~~~CC~irKvePL~raL~~~--daWitG~Rr~Q-s~---------------  156 (243)
T PRK02090         95 LNLKVYRPDASAAEQEARYGGLWEQSVEDPDECCRIRKVEPLNRALAGL--DAWITGLRREQ-SG---------------  156 (243)
T ss_pred             CCEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHC--CEEEECCCHHH-CH---------------
T ss_conf             9779977881499999982997667632489876776502799986017--75874471442-63---------------


Q ss_pred             CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             22357641003579687101210428999998998189320
Q gi|254780546|r  149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      .-+.+... ...+++.-+-||++++++|+.+|.+++++|+-
T Consensus       157 ~Ra~l~~v-e~d~g~~KvnPL~~Ws~~dv~~Yi~~~~LP~n  196 (243)
T PRK02090        157 TRAELPVL-EIDRGRFKINPLADWTNEDVWAYLKEHDLPYH  196 (243)
T ss_pred             HHCCCCCE-EECCCEEEECCCHHCCHHHHHHHHHHCCCCCC
T ss_conf             34258734-52399888670011999999999998599988


No 44 
>KOG2594 consensus
Probab=98.53  E-value=2.4e-07  Score=70.92  Aligned_cols=172  Identities=13%  Similarity=0.086  Sum_probs=109.9

Q ss_pred             HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH----CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9985279983999966942489999999999986----489972999999667798784689999999998718988999
Q gi|254780546|r   12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD----RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        12 ~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~----~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      +.++......+++++|||+-|++||+.++..+++    +...++++.++.+ ...-.++....+..+..-.+ .+|...-
T Consensus        55 ~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~-~~~~~~~~~v~e~lq~l~~~-~~~~~~~  132 (396)
T KOG2594          55 SHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVV-FQEFTDSTAVFEALQELIID-NIEWVRY  132 (396)
T ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-EEECCCHHHHHHHHHHHHHH-HCCCCCE
T ss_conf             343088553469995188404769999999999866653276885489999-88525118889999999984-0555426


Q ss_pred             EEE-------------CCCCCCC--------------------CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             975-------------0478778--------------------0378885455554320012344201234566656689
Q gi|254780546|r   88 SWK-------------NSKPQTG--------------------LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET  134 (423)
Q Consensus        88 ~~~-------------~~~~~~~--------------------~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et  134 (423)
                      .+.             .....+|                    -++--+.-+-..+...+.+.|+..++.||+.+|-++-
T Consensus       133 ~V~~la~~~~~~~~~~~~~~~~n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~  212 (396)
T KOG2594         133 VVSCLAPPEKDNHVVPVESINGNDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASH  212 (396)
T ss_pred             EEEECCCHHHHCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf             88733735764575611003787001132433046445664017899999999999999998599879836735279999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCC--CCCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf             99986236544433223576410--0357968710121042899999899818932
Q gi|254780546|r  135 VYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISW  188 (423)
Q Consensus       135 ~l~rl~r~sg~~g~~l~~~~~~~--~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w  188 (423)
                      ++-....|.|..   .+..-...  +..+++.++|||-++.+.||..|+...|+++
T Consensus       213 vlt~v~~GRG~s---is~~v~~~d~r~~~d~~llrPLrDl~~~Ei~~y~~l~~l~~  265 (396)
T KOG2594         213 VLTAVVKGRGGS---ISTDVQVVDKRPKGDVKLLRPLRDLLSLEITSYCLLDGLAY  265 (396)
T ss_pred             HHHHHHHCCCCC---CEEHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999998366765---10054453346578720000277888999999997606870


No 45 
>pfam00764 Arginosuc_synth Arginosuccinate synthase. This family contains a PP-loop motif.
Probab=98.49  E-value=1.8e-06  Score=64.86  Aligned_cols=139  Identities=22%  Similarity=0.189  Sum_probs=90.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC--------
Q ss_conf             999669424899999999999864899729999996677987846899999999987189-88999975047--------
Q gi|254780546|r   23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK--------   93 (423)
Q Consensus        23 ~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~--------   93 (423)
                      ++|+|||.|+++.+..|++    .   ..+|+++++|-|-   ..+|.+.+++.+.++|. +++++......        
T Consensus         1 VLAySGGLDTSv~l~wL~e----~---~~eVia~~~d~Gq---~~ed~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~   70 (389)
T pfam00764         1 VLAYSGGLDTSVCIPWLKE----K---YYEVIAVAVDVGQ---GEEDLDEAREKALKLGAVKHYVIDAKEEFVEDYIFPA   70 (389)
T ss_pred             CEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCC---CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf             9603676289999999997----0---9928999997999---7787899999999829978999737999999989999


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---------8778037888545555432001234420123456--66566899998623654443322357641003579
Q gi|254780546|r   94 ---------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN  162 (423)
Q Consensus        94 ---------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~  162 (423)
                               .=....+.+|-.-...+.+.+++.++.+++-|-+  -+||+--.+.  .+          .+.      -+
T Consensus        71 i~ana~Yeg~Y~L~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGNDQvRFe~~--~~----------aL~------P~  132 (389)
T pfam00764        71 IKANALYEGRYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELS--IR----------SLA------PD  132 (389)
T ss_pred             HHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH--HH----------HHC------CC
T ss_conf             9668674464785243216699999999987639769943666799745354788--99----------749------99


Q ss_pred             CEEECCH--HCCCHHHHHHHHHHHCCCCC
Q ss_conf             6871012--10428999998998189320
Q gi|254780546|r  163 LWISRPF--LRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       163 ~~i~RPL--L~~~r~~l~~~~~~~~i~wv  189 (423)
                      +.++-|.  ..++|++..+||+++||+.-
T Consensus       133 l~iiaP~R~~~~sR~~~i~ya~~~gI~v~  161 (389)
T pfam00764       133 LKVIAPVRDLNLTREEEIEYAKEKGIPIP  161 (389)
T ss_pred             CEEECCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             75854524532057999999998599887


No 46 
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.48  E-value=3.1e-06  Score=63.15  Aligned_cols=140  Identities=14%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC---
Q ss_conf             79983999966942489999999999986489972999999667798784689999999998718988999975047---
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---   93 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~---   93 (423)
                      ..-..++|++|||.||.+.+.++.+...     +.+++++..-..-  .|.+..+....+|+.+|+++.++..+...   
T Consensus        21 ~g~~~~viGlSGGIDSav~a~La~~Alg-----~~~v~~v~mP~~~--ss~~s~~~A~~la~~lgi~~~~i~I~~~~~~~   93 (248)
T cd00553          21 SGFKGVVLGLSGGIDSALVAALAVRALG-----RENVLALFMPSRY--SSEETREDAKELAEALGIEHVNIDIDPAVEAF   93 (248)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHCC-----CCEEEEEECCCCC--CCHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
T ss_conf             1999199958888999999999999728-----8759998899978--98758999999999958916871559999999


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             ---------------87780378885455554320012344201234566656689999862365444332235764100
Q gi|254780546|r   94 ---------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL  158 (423)
Q Consensus        94 ---------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~  158 (423)
                                     ..+|+++   +.|-..+...+...+..++-|+    +-.|..     .|-.-            .
T Consensus        94 ~~~~~~~~~~~~~~~~~~Niqa---RlRm~~Ly~~An~~~~lVlgTg----NksE~~-----~Gy~T------------k  149 (248)
T cd00553          94 LALLGESGGSELEDLALGNIQA---RLRMVILYALANKLGGLVLGTG----NKSELL-----LGYFT------------K  149 (248)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCEEECCC----CHHHHH-----HCCCE------------E
T ss_conf             9986440487055678742487---8889999999974499896287----460787-----57210------------0


Q ss_pred             CCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             35796871012104289999989981893
Q gi|254780546|r  159 YDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       159 ~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                      .+.+.-=+-|+-++.|.++++.++..|+|
T Consensus       150 yGD~~~d~~Pi~~L~Kt~V~~la~~l~vp  178 (248)
T cd00553         150 YGDGAADINPIGDLYKTQVRELARYLGVP  178 (248)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf             07877582213688499999999996888


No 47 
>PRK13794 hypothetical protein; Provisional
Probab=98.46  E-value=1.3e-06  Score=65.76  Aligned_cols=169  Identities=17%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             HHHHHCC--CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9998527--99839999669424899999999999864899729999996677987846899999999987189889999
Q gi|254780546|r   11 FFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        11 ~~~~~l~--~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      .|++...  .+..+.|++|||+||+|.|+|+....    .  .++.++.+|.|+  |-.+-.++++++++++|++..+..
T Consensus       235 ~fir~~~~~~~~pv~VSfSGGKDS~v~L~La~ka~----~--~~~~vvF~DTgl--EfPeT~e~ve~v~~~~gv~ii~~~  306 (473)
T PRK13794        235 GFMRNTIVKIGKPPSVAYSGGKDSLATLLLALKAF----G--NEFPVLFADTGL--EFPETLENVEDVEELYGLEIIRTS  306 (473)
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC----C--CCEEEEEEECCC--CCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99999998669983997068689999999999860----8--971699960888--767699999999998598789915


Q ss_pred             EECC-CCCCCCHHHHHHHHH-------HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7504-787780378885455-------55432001234420123456665668999986236544433223576410035
Q gi|254780546|r   89 WKNS-KPQTGLMAAAREARY-------ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD  160 (423)
Q Consensus        89 ~~~~-~~~~~~~~~ar~~r~-------~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~  160 (423)
                      -... ..-......++..|.       .-+....++.....++ ...-+...|++ -|..+..-..          ....
T Consensus       307 ~~~fw~~~~~~GpP~rd~RWCc~v~Kl~pl~~~l~~~~~~~~l-~~vG~R~~ES~-~Rak~prv~~----------n~~i  374 (473)
T PRK13794        307 SGEFWEKLEEYGPPARDNRWCSEVCKLSPLGKLIDEKYEGECL-SFVGQRKYESF-NRSKKPRIWR----------NPTI  374 (473)
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EEEECCHHHHH-HHHCCCCCCC----------CCCC
T ss_conf             6447788886199976660213226378999999974899718-99852168768-7504874123----------7887


Q ss_pred             CCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             7968710121042899999899818932026678642210189997
Q gi|254780546|r  161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR  206 (423)
Q Consensus       161 ~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~  206 (423)
                      .+....-|+.+++--++--|+-.++++|       |+-|++-+-|-
T Consensus       375 ~~qi~~~PI~~Wtal~VwLYI~~~~lp~-------NpLY~~Gf~Rv  413 (473)
T PRK13794        375 KKQMLAAPILNWTAMHVWIYLFREKAPY-------NVLYEQGFDRI  413 (473)
T ss_pred             CCCEEEECHHCCHHHHHHHHHHHCCCCC-------CHHHHCCCCCC
T ss_conf             6715761431051879999998758998-------85887687545


No 48 
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.45  E-value=5.3e-06  Score=61.45  Aligned_cols=146  Identities=21%  Similarity=0.200  Sum_probs=95.4

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH---HHHC--CCCEEEEEEECC
Q ss_conf             99839999669424899999999999864899729999996677987846899999999---9871--898899997504
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV---CSRL--RIAHSVVSWKNS   92 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~---~~~l--gi~~~~~~~~~~   92 (423)
                      ...++++=+|||.||-+-.+++-.    +   +.++..+|++ +---.+.+-.+-|.++   ..++  ++.++++.....
T Consensus       175 t~Gk~l~LlSGGIDSPVAa~~mmk----R---G~~v~~v~f~-~~p~t~~~a~~kv~~l~~~L~~y~~~~kl~~v~f~~~  246 (399)
T PRK01565        175 TSGKALLLLSGGIDSPVAGYLAMK----R---GVEIEAVHFH-SPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEI  246 (399)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHH----C---CCEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             778579986178753999999985----5---9879999986-8998778999999999999997288855999663999


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -------7877803788854555543200123442012345666566899998623654443322357641003579687
Q gi|254780546|r   93 -------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI  165 (423)
Q Consensus        93 -------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i  165 (423)
                             .+..-..-..|+.-|+.....+++.++..+.||-.+.-.+-..+-++.--+               ..-+..+
T Consensus       247 ~~~i~~~~~~~~~~vl~RR~M~riA~~iA~~~~~~alvTGESLGQVASQTl~Nl~~i~---------------~~~~~pV  311 (399)
T PRK01565        247 QEEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMQAIN---------------AVTNLPV  311 (399)
T ss_pred             HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH---------------HHCCCCC
T ss_conf             9999860880038599999999999999998599789824135567675567788887---------------5217754


Q ss_pred             ECCHHCCCHHHHHHHHHHHCC
Q ss_conf             101210428999998998189
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~~i  186 (423)
                      +|||+++.|+||.+.+++.|-
T Consensus       312 lRPLIg~DK~EII~~Ar~IGT  332 (399)
T PRK01565        312 LRPLIGMDKEEIIEIAKEIGT  332 (399)
T ss_pred             CCCCCCCCHHHHHHHHHHCCC
T ss_conf             466557898999999987096


No 49 
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.43  E-value=2.8e-06  Score=63.42  Aligned_cols=170  Identities=11%  Similarity=0.040  Sum_probs=98.8

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CC
Q ss_conf             27998399996694248999999999998648997299999966779878468999999999871898899997504-78
Q gi|254780546|r   16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KP   94 (423)
Q Consensus        16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~-~~   94 (423)
                      ...-++.++=+|||+||++||||+...-.- ..++  +-++|||+|..-  .+-.+|..++++++|+.+.+-..+.. +.
T Consensus        34 ~a~f~~pvmL~S~GKDS~VmlhLA~KAF~p-~~iP--fPllHIDTg~kF--~Emi~fRD~~a~~~~l~LiV~~n~~~i~~  108 (312)
T PRK12563         34 VAECSKPVMLYSIGKDSSVMLHLAMKAFRP-TRPP--FPLLHVDTTWKF--REMIDFRDRRAKELGLDLVVHHNPDGIAR  108 (312)
T ss_pred             HHHHCCCEEEEECCCHHHHHHHHHHHHHCC-CCCC--CCEEEEECCCCH--HHHHHHHHHHHHHHCCEEEEECCHHHHHC
T ss_conf             997369679861674299999999997377-8999--735886368875--99999999999981986898328788866


Q ss_pred             CCC-----CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCC--CCCC----CCCCCCCCCCCCC
Q ss_conf             778-----0378885455554320012344201234566656689999862--3654--4433----2235764100357
Q gi|254780546|r   95 QTG-----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ--RDYA--EKGM----GLSGMCDTILYDL  161 (423)
Q Consensus        95 ~~~-----~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~--r~sg--~~g~----~l~~~~~~~~~~~  161 (423)
                      +.+     .........-..+.+...+.+.+.++.|--.|.+------|.+  |..+  ++-.    .++.+.+.....+
T Consensus       109 g~~p~~~~~~~~~~~lKT~~L~~ale~~~fDa~~gGaRRDEEksRAKERiFS~Rd~~~~WDPknQrPElWnlyN~~~~~G  188 (312)
T PRK12563        109 GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLYNARLRRG  188 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf             99967678377766898899999999739887850453213423443403066677889885558835877615567999


Q ss_pred             CCEEECCHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             96871012104289999989981893202
Q gi|254780546|r  162 NLWISRPFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       162 ~~~i~RPLL~~~r~~l~~~~~~~~i~wve  190 (423)
                      .-.-+=||++++.-+|-+|....+|+.+.
T Consensus       189 eh~RVfPlsNWTElDIW~YI~~E~Ipi~~  217 (312)
T PRK12563        189 ESLRVFPLSNWTELDVWQYIAREKIPLVP  217 (312)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             71442235566178999999982889886


No 50 
>PRK13795 hypothetical protein; Provisional
Probab=98.41  E-value=2.4e-06  Score=63.88  Aligned_cols=161  Identities=18%  Similarity=0.193  Sum_probs=89.8

Q ss_pred             HHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             99985279--9839999669424899999999999864899729999996677987846899999999987189889999
Q gi|254780546|r   11 FFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        11 ~~~~~l~~--~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      .|++....  +..+.|++|||+||+|.|+|+....       .++.++.+|.|+  |-.+-.++|+++++++|+++.+.+
T Consensus       235 ~fir~~~~~~~~pv~VsfSGGKDS~v~L~La~ka~-------~~~~~~f~dTgl--EfPeT~e~v~~~~~~~gi~~~~~~  305 (630)
T PRK13795        235 NFIREVAEKYNLPVVVSFSGGKDSLVVLDLAAEAL-------RKFKAFFNNTGL--EFPETVENVKEVAEEYGVELIVAD  305 (630)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC-------CCEEEEEECCCC--CCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99998787548975995268689999999999854-------982899950776--764699999999998698189965


Q ss_pred             EECCC--CCCCCHHHHHHHHHHHHHHHCCCCC----CCCHHHHHH--------HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             75047--8778037888545555432001234----420123456--------665668999986236544433223576
Q gi|254780546|r   89 WKNSK--PQTGLMAAAREARYALISEHAKTIN----ATLIMTAHT--------FDDQLETVYMRSQRDYAEKGMGLSGMC  154 (423)
Q Consensus        89 ~~~~~--~~~~~~~~ar~~r~~~~~~~~~~~~----~~~l~~ah~--------~dD~~Et~l~rl~r~sg~~g~~l~~~~  154 (423)
                      .....  .-......+|..      .||....    ....+-.+.        -+...|.+ -|            +..+
T Consensus       306 a~~~fw~~~~~~GpP~rd~------RWCckv~Kl~pl~~~i~~~~~~~~l~~~G~R~~ES~-~R------------~~~~  366 (630)
T PRK13795        306 AGDAFWRAIEKFGPPARDY------RWCCKVCKLGPITRAIKSNFPQGCLSFVGQRKYESF-AR------------AKSP  366 (630)
T ss_pred             CCHHHHHHHHHCCCCCCCC------CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHH-HH------------HCCC
T ss_conf             6367888888749996556------435543100579999997589962999855246637-66------------0488


Q ss_pred             CCCC--CCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             4100--357968710121042899999899818932026678642210189997
Q gi|254780546|r  155 DTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR  206 (423)
Q Consensus       155 ~~~~--~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~  206 (423)
                      ..+.  ...+...+-|+.+++--++--|.-.+++++       |+-|++-+-|-
T Consensus       367 rv~~n~~i~~q~~a~PI~~Ws~~~VwLYi~~~~l~~-------NplY~~Gf~Ri  413 (630)
T PRK13795        367 RVWRNPWVPNQIGAAPIQDWTALEVWLYIFSRKLPY-------NPLYERGFDRI  413 (630)
T ss_pred             CCCCCCCCCCEEEEECHHCCCHHHHHHHHHHCCCCC-------CHHHHCCCCCC
T ss_conf             614477877726872033173869999998848998-------84787587565


No 51 
>KOG1622 consensus
Probab=98.40  E-value=1.2e-06  Score=65.95  Aligned_cols=163  Identities=20%  Similarity=0.115  Sum_probs=91.0

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      .......++++++|||.||+++..++.+...     .-+++++|||-|+--  ..|++.|++....+||+.++.......
T Consensus       225 ~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg-----~~R~~ai~vdNG~mr--k~Ea~~V~~tl~~lgi~i~v~~as~~f  297 (552)
T KOG1622         225 RKWVGDYKVLVAVSGGVDSTVCAALLRRALG-----PDRVHAIHVDNGFMR--KKEAEQVEKTLVYLGIPITVVDASETF  297 (552)
T ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEECCCCHH--HHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf             9984644559983488508999999998637-----894489981264010--367788999999738844996215888


Q ss_pred             CC-----CCCHH-------HHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--
Q ss_conf             87-----78037-------8885455554320012344--20123456665668999986236544433223576410--
Q gi|254780546|r   94 PQ-----TGLMA-------AAREARYALISEHAKTINA--TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI--  157 (423)
Q Consensus        94 ~~-----~~~~~-------~ar~~r~~~~~~~~~~~~~--~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~--  157 (423)
                      -+     .+-+.       ..-...-........+.+.  .+++.|.-.-|..|...   ..|+|.    +..+....  
T Consensus       298 ~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~ieS~s---~~g~~~----a~tIKThhn~  370 (552)
T KOG1622         298 LSKLKGVTDPEEKRKIIGRTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLIESAS---VYGSGH----AETIKTHHND  370 (552)
T ss_pred             HHHHCCCCCHHHHCEECCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCHHHHHCC---CCCCCH----HHHHHCCCCC
T ss_conf             876126688788161024200240767888752065760004433501410443134---567734----5442010255


Q ss_pred             ----CCC-CCCEEECCHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             ----035-796871012104289999989981893202
Q gi|254780546|r  158 ----LYD-LNLWISRPFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       158 ----~~~-~~~~i~RPLL~~~r~~l~~~~~~~~i~wve  190 (423)
                          +.. .-..++-||-++-|+|.|+.-+..|++-.-
T Consensus       371 ~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~~L  408 (552)
T KOG1622         371 TGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPESL  408 (552)
T ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             05899999831657426788889998766650872432


No 52 
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.39  E-value=8e-06  Score=60.21  Aligned_cols=141  Identities=21%  Similarity=0.175  Sum_probs=90.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC-------
Q ss_conf             9999669424899999999999864899729999996677987846899999999987189-88999975047-------
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK-------   93 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~-------   93 (423)
                      |++|+|||.|+++.+..|++-    .  ..+|++++||-|- +  +++.+.+++-+.++|. +++++......       
T Consensus         1 VvLAySGGLDTSv~l~wL~e~----~--~~eVia~~~d~Gq-~--~e~~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p   71 (385)
T cd01999           1 VVLAYSGGLDTSVILKWLKEK----G--GYEVIAVTADVGQ-P--EEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFP   71 (385)
T ss_pred             CEEEECCCCHHHHHHHHHHHH----C--CCEEEEEEEECCC-C--HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
T ss_conf             979977881799999999974----5--9849999998999-6--67778999999981997899961299999999999


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ----------8778037888545555432001234420123456--6656689999862365444332235764100357
Q gi|254780546|r   94 ----------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL  161 (423)
Q Consensus        94 ----------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~  161 (423)
                                .=....+.+|-.-...+.+.+++.++..++-|-+  -+||+--.+.  .+          .+.      .
T Consensus        72 ai~ana~Yeg~Y~L~tslaRplIak~~ve~A~~~ga~aiaHG~TGkGNDQvRFe~~--~~----------aL~------P  133 (385)
T cd01999          72 AIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELA--FY----------ALN------P  133 (385)
T ss_pred             HHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH--HH----------HHC------C
T ss_conf             99608643375321350157899999999999809849974566688840689999--99----------859------9


Q ss_pred             CCEEECCH---HCCCHHHHHHHHHHHCCCCC
Q ss_conf             96871012---10428999998998189320
Q gi|254780546|r  162 NLWISRPF---LRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       162 ~~~i~RPL---L~~~r~~l~~~~~~~~i~wv  189 (423)
                      ++.++-|.   =..+|++..+||+++||+.-
T Consensus       134 ~l~iiAP~Rd~~~~sR~~~i~ya~~~gi~v~  164 (385)
T cd01999         134 DLKIIAPWRDWEFLSREEEIEYAEEHGIPVP  164 (385)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             9758514731444888999999998599988


No 53 
>PRK08557 hypothetical protein; Provisional
Probab=98.38  E-value=4.3e-06  Score=62.15  Aligned_cols=151  Identities=17%  Similarity=0.200  Sum_probs=84.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC---CCC
Q ss_conf             98399996694248999999999998648997299999966779878468999999999871898899997504---787
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQ   95 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~---~~~   95 (423)
                      +-.|.|++|||+||+|+|+++....     .  ++.++.+|.|+  |-.+-.++|+++++.+|++..+..-+.-   -..
T Consensus       183 ~~pV~VSfSGGKDS~a~L~La~~a~-----~--~~~vvF~DTGl--EfPeT~eyve~~~~~~~~~l~~~~~~~fw~~~~~  253 (420)
T PRK08557        183 GYAINASFSGGKDSAVSTLLSKEVI-----P--DLDVVFIDTGL--EYPETLNYVKDFAKKYDINLDTVDGDNFWDNLEK  253 (420)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHC-----C--CCEEEEECCCC--CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf             9746996068789999999999854-----8--81699962887--7723899999999980996799654668988775


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCC----CCCHHHHHH---------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CC
Q ss_conf             78037888545555432001234----420123456---------6656689999862365444332235764100--35
Q gi|254780546|r   96 TGLMAAAREARYALISEHAKTIN----ATLIMTAHT---------FDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YD  160 (423)
Q Consensus        96 ~~~~~~ar~~r~~~~~~~~~~~~----~~~l~~ah~---------~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~--~~  160 (423)
                      .+.  .++.      ..||+...    ....+-.+.         -+...|++ -|            +.....+.  ..
T Consensus       254 ~Gp--P~rd------~RWCc~v~Kl~Pl~~~i~~~~~~~~vl~~~G~R~~ES~-~R------------~~~~~~~~~~~v  312 (420)
T PRK08557        254 EGI--PTKD------NRWCNSACKLMPLKRYLKKKYGNKKVLTIDGSRKYESF-TR------------ANLDYERKSGFI  312 (420)
T ss_pred             CCC--CCCC------CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHH-HH------------HCCCCCCCCCCC
T ss_conf             499--9766------72507431017899999985789875999970145407-66------------058741347776


Q ss_pred             CCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             7968710121042899999899818932026678642210189997
Q gi|254780546|r  161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR  206 (423)
Q Consensus       161 ~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~  206 (423)
                      ....-+-|+++++--++--|+-.++++|       |+-|++-+-|-
T Consensus       313 ~~q~~~~PI~~Wsa~~VwLYI~~~~l~~-------NplY~~Gf~Rv  351 (420)
T PRK08557        313 DFQTNVFPILDWNSLDIWSYIFSNDILY-------NPMYDKGFERI  351 (420)
T ss_pred             CCCEEEEHHHCCCHHHHHHHHHHCCCCC-------CHHHHCCCCCC
T ss_conf             6650353153260769999999759999-------84886687636


No 54 
>PRK13980 NAD synthetase; Provisional
Probab=98.36  E-value=1.4e-05  Score=58.45  Aligned_cols=150  Identities=19%  Similarity=0.164  Sum_probs=89.8

Q ss_pred             HHHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999852---7998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r    7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA   83 (423)
Q Consensus         7 ~~~~~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~   83 (423)
                      +.+-.|++.-   .+...++|++|||.||.+.+.++.+..    + +-+++++..=.  +..|.+..+....+|+.+||+
T Consensus        13 ~~iv~~lrdy~~~~g~kg~VlGlSGGIDSavva~La~~Al----g-~~~v~~v~mP~--~~ss~~s~~dA~~la~~lgi~   85 (264)
T PRK13980         13 EIIVDFIREEVEKAGFKGVVLGLSGGIDSAVVAYLAVKAL----G-KENVLALLMPY--RVSPPEDLEDALLVAERLGIE   85 (264)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHC----C-CCCEEEEECCC--CCCCHHHHHHHHHHHHHHCCC
T ss_conf             9999999999998099809997986888999999999854----9-66068998989--999887899999999986998


Q ss_pred             EEEEEEECCC-------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8999975047-------------877803788854555543200123442012345666566899998623654443322
Q gi|254780546|r   84 HSVVSWKNSK-------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL  150 (423)
Q Consensus        84 ~~~~~~~~~~-------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l  150 (423)
                      +.++..+..-             ..+|+++   +.|-..+...+...+..++-|+.-    .| +++-.+--   .|   
T Consensus        86 ~~~i~I~~~~~~~~~~~~~~~~~~~~Niqa---R~Rm~~Ly~~An~~~~lVlgTgNk----sE-~~~Gy~Tk---yG---  151 (264)
T PRK13980         86 YKVIEITPIVDAFFSAVPDADRLRRGNIMA---RTRMVLLYDYANRDNRLVLGTSNK----SE-LLLGYFTK---YG---  151 (264)
T ss_pred             EEEEECHHHHHHHHHHCCCCCHHHHHHHHH---HHHHHHHHHHHHHCCCEEECCCCH----HH-HHHHHCCC---CC---
T ss_conf             499827999999998631000668887589---899999999864339776558867----47-98721001---68---


Q ss_pred             CCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             3576410035796871012104289999989981893
Q gi|254780546|r  151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       151 ~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                                .+.-=+-|+-++.|.|+++.++..|+|
T Consensus       152 ----------D~~~d~~Pi~dL~Kt~V~~La~~l~vP  178 (264)
T PRK13980        152 ----------DGAVDINPIGDLYKTQVRELARHLGVP  178 (264)
T ss_pred             ----------CCCCCHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             ----------766562452587399999999993996


No 55 
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.36  E-value=2.4e-06  Score=63.96  Aligned_cols=108  Identities=19%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             52799839999669424899999999999864899729999996677987846899999999987189889999750478
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP   94 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~   94 (423)
                      .+.....|++.+|||.||++++.+++....    .  ++.+.+++++.  +..+|..+++.+++.+|++++++..+...-
T Consensus        11 ~l~sd~~vg~~LSGGlDSs~ia~~~~~~~~----~--~~~~~s~~~~~--~~~de~~~a~~va~~~~~~~~~i~~~~~~~   82 (269)
T cd01991          11 RLRSDVPVGVLLSGGLDSSLVAALAARLLP----E--PVKTFSIGFGF--EGSDEREYARRVAEHLGTEHHEVEFTPADL   82 (269)
T ss_pred             HHCCCCCEEEEECCHHHHHHHHHHHHHHCC----C--CCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf             954488568651356999999999998368----9--98479986289--997378999999998098824531434889


Q ss_pred             CC----------CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             77----------8037888545555432001234420123456665
Q gi|254780546|r   95 QT----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        95 ~~----------~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      ..          ..........+..+...+.+.++.++++|+-.|.
T Consensus        83 ~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~g~~VllsG~GgDE  128 (269)
T cd01991          83 LAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADE  128 (269)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf             9999999998639601254789999999998539779996776146


No 56 
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.34  E-value=2.4e-05  Score=56.85  Aligned_cols=149  Identities=16%  Similarity=0.138  Sum_probs=91.8

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEECCCC--
Q ss_conf             998399996694248999999999998648997299999966779878468999999999871898-89999750478--
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA-HSVVSWKNSKP--   94 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~-~~~~~~~~~~~--   94 (423)
                      ...||++|+|||.|-++.+..|++    +.  +.+++++++|-|- +  .+|.+.+++-+.++|.. ++++....+.-  
T Consensus         3 ~~kkvvLAYSGGLDTSv~i~wL~e----~~--~~eVit~tadvGQ-~--eed~~~i~eKA~~~Ga~~~~viD~reeFv~~   73 (403)
T COG0137           3 KVKKVVLAYSGGLDTSVAIKWLKE----KG--GAEVIAVTADVGQ-P--EEDLDAIREKALELGAEEAYVIDAREEFVED   73 (403)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHH----HC--CCEEEEEEEECCC-C--HHHHHHHHHHHHHHCCCEEEEEECHHHHHHH
T ss_conf             776799995488239999999997----65--9469999975899-7--5775799999998188528996438999999


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---------------77803788854555543200123442012345666566899998623654443322357641003
Q gi|254780546|r   95 ---------------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY  159 (423)
Q Consensus        95 ---------------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~  159 (423)
                                     =...-+.||-.-...+.+.+++.|+..++  |-.            -|.|-+....-.  .....
T Consensus        74 yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~Ga~ava--HGc------------TGKGNDQvRFE~--~~~al  137 (403)
T COG0137          74 YIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVA--HGC------------TGKGNDQVRFEL--AILAL  137 (403)
T ss_pred             HHHHHHHHHCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--ECC------------CCCCCCEEEEEE--EHHHH
T ss_conf             99999973051215641454346779999999999971996997--467------------888875354320--04541


Q ss_pred             CCCCEEECCH--HCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             5796871012--1042899999899818932026
Q gi|254780546|r  160 DLNLWISRPF--LRCRREDIRSFLLQRNISWCED  191 (423)
Q Consensus       160 ~~~~~i~RPL--L~~~r~~l~~~~~~~~i~wveD  191 (423)
                      ..++.++-|.  ..++|++..+|+.++||+.--|
T Consensus       138 ~pdlkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~  171 (403)
T COG0137         138 NPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT  171 (403)
T ss_pred             CCCCEEEEEHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf             8996798563341337699999999849976656


No 57 
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domain has  a strongly conserved motif SGGKD at the N terminus.
Probab=98.34  E-value=4.3e-06  Score=62.13  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             39999669424899999999999864899729999996677987846899999999987189889999750
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN   91 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~   91 (423)
                      ..+|+||||+||+-.+|.+++-.      +++..+||+|+++..  +...+.++++|+. |+++.....+.
T Consensus         3 DcIVpvSGGKDS~y~~~~lk~ky------glnpL~Vt~~~~~~t--~~g~~Nl~nl~~~-g~D~~~~~~~~   64 (154)
T cd01996           3 DCIIGVSGGKDSSYALYLLKEKY------GLNPLAVTVDNGFNS--EEAVKNIKNLIKK-GLDLDHLVINP   64 (154)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHH------CCCEEEEEECCCCCC--HHHHHHHHHHHHC-CCCEEEEECCH
T ss_conf             78996888818999999999994------996599996798754--6899999999974-99816993288


No 58 
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.31  E-value=1.9e-05  Score=57.53  Aligned_cols=77  Identities=22%  Similarity=0.290  Sum_probs=54.5

Q ss_pred             HHHHHHHHH-C-CC-CC-EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             999999985-2-79-98-39999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r    7 ESVRFFVRS-L-VY-PA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI   82 (423)
Q Consensus         7 ~~~~~~~~~-l-~~-~~-~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi   82 (423)
                      +.+..|++. + .. .. -++||+|||.||++.+.|+.+-..     +-++.++..-.  +..+.+.....+.+|+.+||
T Consensus        17 ~riv~fir~~v~~~~~~kG~VlGlSGGIDSAv~a~Lav~AlG-----~e~V~gl~MP~--~~s~~~s~~~a~~la~~lGi   89 (325)
T PRK00876         17 ERIRAFIREQVLGTLKRRGVVLGLSGGIDSSVTLALCVRALG-----KDRVLGLLMPE--RDSSPDSLRLGRMLAESLGV   89 (325)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHC-----CCCEEEEECCC--CCCCHHHHHHHHHHHHHCCC
T ss_conf             999999999998516986799968768889999999999748-----55169997886--56887789999999998199


Q ss_pred             CEEEEEEE
Q ss_conf             88999975
Q gi|254780546|r   83 AHSVVSWK   90 (423)
Q Consensus        83 ~~~~~~~~   90 (423)
                      ++.+..+.
T Consensus        90 ~~~~idI~   97 (325)
T PRK00876         90 EYVVEDIS   97 (325)
T ss_pred             CEEEEECH
T ss_conf             35998448


No 59 
>pfam00733 Asn_synthase Asparagine synthase. This family is always found associated with pfam00310. Members of this family catalyse the conversion of aspartate to asparagine.
Probab=98.29  E-value=1.8e-05  Score=57.67  Aligned_cols=165  Identities=22%  Similarity=0.218  Sum_probs=100.4

Q ss_pred             HHHHH-HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99999-85279983999966942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r    9 VRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus         9 ~~~~~-~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      +.+.+ ..+.....|++.+|||.||++++.++++..    .  .++.+++++..-  ....|..+++..++.+|++|+.+
T Consensus         6 l~~aV~~~l~sdvpig~~LSGGlDSs~ia~l~~~~~----~--~~i~~~s~~~~~--~~~~E~~~a~~~a~~~~~~~~~v   77 (195)
T pfam00733         6 LRDAVKRRLRADVPVGVLLSGGLDSSLIAALAARQS----S--PPLKTFSVGFEG--SDYDEAPYAELVADHLGTDHHEI   77 (195)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC----C--CCCEEEECCCCC--CCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             999999983469836753067468999999999853----8--995389557888--99758999999996513351787


Q ss_pred             EEECC--------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             97504--------------7877803788854555543200123442012345666566899998623654443322357
Q gi|254780546|r   88 SWKNS--------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        88 ~~~~~--------------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~  153 (423)
                      .++..              .|.....   ....| .+...++ .+..++++|.-.|..        +-|-..+   ..+|
T Consensus        78 ~~~~~~~~~~~~~~i~~~~~P~~~~~---~~~~~-~l~k~~~-~~~kV~lsG~GaDEl--------f~GYr~D---r~~m  141 (195)
T pfam00733        78 IVTEEELLDALPEVIYHLEEPFGDSS---AIPLY-LLSRLAR-KGVKVVLSGEGADEL--------FGGYRDD---RMSM  141 (195)
T ss_pred             EECHHHHHHHHHHHHHHHCCCCCCCC---HHHHH-HHHHHHH-CCCEEEEEEECHHHH--------HCCCCCC---CHHH
T ss_conf             72559999998888998629877751---78999-9999986-898499971568888--------4798687---0122


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             6410035796871012104289999989981893202667864221018999764345
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI  211 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l  211 (423)
                      .      .++...=|+|+   .++.+||......|.-.  |..   ++--+|+.+...
T Consensus       142 ~------~gvE~R~Pfld---~~lv~~~~~ip~~~k~~--~~~---~K~iLR~a~~~~  185 (195)
T pfam00733       142 A------HGLEVRVPFLD---HRLVEFALSLPPELKLR--DGE---EKYILREAARGI  185 (195)
T ss_pred             H------CCCEEECCCCC---HHHHHHHHHCCHHHHCC--CCC---CHHHHHHHHHCC
T ss_conf             2------57305566223---79999999499999479--999---889999998671


No 60 
>PRK06850 hypothetical protein; Provisional
Probab=98.29  E-value=3.1e-05  Score=56.03  Aligned_cols=182  Identities=14%  Similarity=0.179  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCCC-CC----HHHHHHHH
Q ss_conf             6989999999985--27998399996694248999999999998648--9972999999667798-78----46899999
Q gi|254780546|r    3 LSPIESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLR-ET----AKDEVRYV   73 (423)
Q Consensus         3 ~~p~~~~~~~~~~--l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~--~~~~~l~a~~vdHglr-~~----s~~e~~~v   73 (423)
                      ..+++.+.+.++.  +......+||+|||+||+|+|+|.-.....-+  ...-.|++++-|.+.- |.    -..-.+..
T Consensus         3 ~~~i~~i~~ei~~~Yl~D~rPWvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnPiV~~~v~~sL~~i   82 (488)
T PRK06850          3 GEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRHKPVYVISTDTLVENPVVVAWVNKSLERI   82 (488)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             13799999999999863799879975877199999999999998378876689889995898756779999999999999


Q ss_pred             HHHHHHCCCCEEEEEEECC-------------CCCCCCHHHHHHHH--------HHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999871898899997504-------------78778037888545--------55543200123442012345666566
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS-------------KPQTGLMAAAREAR--------YALISEHAKTINATLIMTAHTFDDQL  132 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~-------------~~~~~~~~~ar~~r--------~~~~~~~~~~~~~~~l~~ah~~dD~~  132 (423)
                      +..+++.|+|..+..+...             .|.++-  ..|-+-        -+++.+...+.|-..+++|.-.+.-.
T Consensus        83 ~~~A~~~~LPI~~~~v~P~~~dtFWvnlIGrGYPaP~~--~FRWCTdRLKI~P~~rFI~~~v~~~ge~IlvLGtR~~ES~  160 (488)
T PRK06850         83 KEAAKKQGLPITPHKLTPKVKDTFWVNLIGKGYPAPRR--KFRWCTERLKINPSNDFIRDKVSAFGEVIVVLGTRKAESA  160 (488)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCC--CCCCCCHHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             99998659982268814886544335420476799987--6654756651484899999998753978999854527779


Q ss_pred             H-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             8-9999862365444332235764100357968710121042899999899818932026
Q gi|254780546|r  133 E-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED  191 (423)
Q Consensus       133 E-t~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveD  191 (423)
                      . .-.|......|..- .++   +- ....+..++.|.-.++-+++=.|+....-||=.|
T Consensus       161 ~Ra~~m~k~e~~~~r~-~Ls---~h-~~l~n~~vy~PI~~ws~ddVW~yL~~~~nPWg~~  215 (488)
T PRK06850        161 ARAQVMAKHKIGGTRD-RLS---RH-STLPNSFVYTPIEDWSNDDVWKYLLQWENPWGGS  215 (488)
T ss_pred             HHHHHHHHHHCCCCCC-CCC---CC-CCCCCCEEECCHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf             9999999875247301-257---78-8888868971255377337999986189988997


No 61 
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.28  E-value=3.6e-06  Score=62.67  Aligned_cols=160  Identities=19%  Similarity=0.281  Sum_probs=98.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC---------
Q ss_conf             39999669424899999999999864899729999996677987846899999999987189889999750---------
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------   91 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~---------   91 (423)
                      ++.|=+|||+||+.-+.+|..+       ++++..+||+.|+-++    -++.++.++.+|+||.+++.+.         
T Consensus         2 ~v~vLfSGGKDSSLaA~iL~kl-------gyev~LVTvnFGv~d~----~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em   70 (198)
T COG2117           2 DVYVLFSGGKDSSLAALILDKL-------GYEVELVTVNFGVLDS----WKYARETAAILGFPHEVLQLDREILEDAVEM   70 (198)
T ss_pred             CEEEEECCCCCHHHHHHHHHHH-------CCCCEEEEEEECCCCC----HHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf             5689844897105899999871-------7871799987334664----0668999998299700001688999999999


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             ----4787780378885455554320012344201234566656689999862365444332235764100357968710
Q gi|254780546|r   92 ----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR  167 (423)
Q Consensus        92 ----~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~R  167 (423)
                          ..|..+||-.-+.+ ..++   +.. ....+.-|.-.||.+-+.-.+-.+.              .--.-++..++
T Consensus        71 ~iedg~P~~aIq~iH~~a-lE~~---A~r-~~~~iaDGTRRDDrvP~ls~~~~qS--------------LEdR~nv~Yi~  131 (198)
T COG2117          71 IIEDGYPRNAIQYIHEMA-LEAL---ASR-EVDRIADGTRRDDRVPKLSRSEAQS--------------LEDRLNVQYIR  131 (198)
T ss_pred             HHHCCCCCHHHHHHHHHH-HHHH---HHH-HHHHHCCCCCCCCCCCCCCHHHHHH--------------HHHHCCCEEEC
T ss_conf             985389850889999999-9999---877-7888757874456676424988751--------------88751864553


Q ss_pred             CHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHH
Q ss_conf             1210428999998998189320266786422101-8999764345
Q gi|254780546|r  168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER-VRVRRFVRDI  211 (423)
Q Consensus       168 PLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R-~rlR~~l~~l  211 (423)
                      ||+++.+..|+..+... +..-+-||....+-+= +-+|..|...
T Consensus       132 PL~G~G~kti~~Lv~~~-f~~e~~~Se~~~k~DYEaElR~lL~er  175 (198)
T COG2117         132 PLLGLGYKTIRRLVSAI-FILEEGPSEKIEKADYEAELRYLLRER  175 (198)
T ss_pred             CCCCCCHHHHHHHHHHH-EEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             03344678999998877-341016655555532699999999972


No 62 
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.27  E-value=2.5e-05  Score=56.67  Aligned_cols=170  Identities=16%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCCC-CC----HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             527998399996694248999999999998648--9972999999667798-78----4689999999998718988999
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLR-ET----AKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~--~~~~~l~a~~vdHglr-~~----s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      .+......+||+|||+||+|+|+|.-.....-+  ...-.|++++-|.+.- |.    -..-.+..+..+++.++|..+.
T Consensus         9 Y~~d~~PWvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnP~V~~~v~~~L~~i~~~a~~~~LPi~~~   88 (447)
T TIGR03183         9 YCADDIPWVIGYSGGKDSTAVLQLVWNALSELPPEQRTKKIHVISTDTLVENPIVAAWVNVSLERMQEAAQKQGLPIEPH   88 (447)
T ss_pred             HHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             85379987997587739999999999999847887576888999799875577999999999999999999749982368


Q ss_pred             EEECC-------------CCCCCCHHHHHHHH--------HHHHHHHCCCCCCCCHHHHHHHHHHH-HHHHHHHHCCCCC
Q ss_conf             97504-------------78778037888545--------55543200123442012345666566-8999986236544
Q gi|254780546|r   88 SWKNS-------------KPQTGLMAAAREAR--------YALISEHAKTINATLIMTAHTFDDQL-ETVYMRSQRDYAE  145 (423)
Q Consensus        88 ~~~~~-------------~~~~~~~~~ar~~r--------~~~~~~~~~~~~~~~l~~ah~~dD~~-Et~l~rl~r~sg~  145 (423)
                      .+...             -|.++..  .|-+-        -+++.+...+.|...+++|.-.+.-. -.-.|....+++.
T Consensus        89 ~~~P~~~dtFWvnlIGrGYPaP~~~--FRWCTdrLKI~P~~~fi~~~v~~~ge~ilvLGtR~~ES~~Ra~~i~k~e~~~~  166 (447)
T TIGR03183        89 RLTPAIEDTFWVNLIGKGYPAPRQK--FRWCTDRLKISPSNTFIRDKVAANGEVILVLGTRKNESQARAAVMEKHEGGST  166 (447)
T ss_pred             EECCCCCCCHHHHHCCCCCCCCCCC--CCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf             9337854430001034630799987--65255766368289999986521496899995652777999999998644670


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             4332235764100357968710121042899999899818932026
Q gi|254780546|r  146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED  191 (423)
Q Consensus       146 ~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveD  191 (423)
                      .. .++   +. ....+..++.|.-.++-+++=.|+....-||=.|
T Consensus       167 ~~-~ls---~h-~~l~n~~vy~PI~dws~ddVW~yL~~~~~Pwg~~  207 (447)
T TIGR03183       167 RD-RLS---RN-SSLPNSWVYTPIEDWSNDDVWMYLLQNPNPWGYD  207 (447)
T ss_pred             HH-HCC---CC-CCCCCCEEECCHHHCCHHHHHHHHCCCCCCCCCC
T ss_conf             42-127---68-8888837973067476408999863389988998


No 63 
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518   Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , .   In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation.   AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=98.27  E-value=4.3e-05  Score=55.06  Aligned_cols=160  Identities=16%  Similarity=0.192  Sum_probs=97.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC------
Q ss_conf             3999966942489999999999986489972-999999667798784689999999998718988999975047------
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------   93 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~-~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~------   93 (423)
                      ||++|+|||.|-++-+.+|.+    +  .++ +++++++|=| +|+ .+|...+++.+.++|..-+ ..+|..+      
T Consensus         1 KVvLAySGGLDTSv~l~wL~~----k--yG~~~Via~~~dvG-QPD-E~d~~~~~~kA~~~GA~~~-~~iDak~eFv~dy   71 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEE----K--YGYEEVIAVTADVG-QPD-EEDIDAIEEKALKYGAEKH-YTIDAKEEFVKDY   71 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHH----H--HCCCCEEEEEEECC-CCC-HHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHH
T ss_conf             968886070259999999886----5--28986079997567-999-8888889999887367102-5772368899999


Q ss_pred             ------------CC-----CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             ------------87-----7803788854555543200123442012345666566899998623654443322357641
Q gi|254780546|r   94 ------------PQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT  156 (423)
Q Consensus        94 ------------~~-----~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~  156 (423)
                                  .+     ...-+-||-.-...+-+.+++.|+..+.  |--            -|.|-+...--.  -.
T Consensus        72 ~f~aiqanA~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~~Ga~Ava--HGC------------TGKGNDQ~RFe~--~~  135 (420)
T TIGR00032        72 LFAAIQANAVYEGTGGLVYPLSTALARPLIAKKLVEVAKKEGAEAVA--HGC------------TGKGNDQVRFER--SI  135 (420)
T ss_pred             HHHHHHCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE--CCC------------CCCCCCHHHHHH--HH
T ss_conf             88876506603178741034766114579999999998466954987--076------------877741357658--88


Q ss_pred             CCCCCCCEEECCH--HCCC-----HHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHHHH
Q ss_conf             0035796871012--1042-----89999989981893202667864221--018999764
Q gi|254780546|r  157 ILYDLNLWISRPF--LRCR-----REDIRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFV  208 (423)
Q Consensus       157 ~~~~~~~~i~RPL--L~~~-----r~~l~~~~~~~~i~wveDpSN~d~~f--~R~rlR~~l  208 (423)
                      .....++.++-|.  +.++     |+|..+|+.++||++   |++.+-.|  |+|-+=..+
T Consensus       136 ~~~~p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~---p~~~~K~YSiD~Nl~grs~  193 (420)
T TIGR00032       136 RALNPDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPV---PMTKEKPYSIDENLWGRSI  193 (420)
T ss_pred             HHHCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHHHH
T ss_conf             752689858747346467764059488999999668887---6546777762366775555


No 64 
>PRK01269 thiamine biosynthesis protein ThiI; Provisional
Probab=98.25  E-value=2.7e-05  Score=56.49  Aligned_cols=146  Identities=15%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHH-HHHHCC----CCEEEEEEECC
Q ss_conf             9983999966942489999999999986489972999999667798784689999999-998718----98899997504
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSRLR----IAHSVVSWKNS   92 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~-~~~~lg----i~~~~~~~~~~   92 (423)
                      ...++++=+|||-||-+-.+++-.    +   +.+++.+|+|.|-. .+..-...+.. +.+++|    +.++++.....
T Consensus       176 tqGkvL~LlSGGiDSPVAa~~mmK----R---G~~v~~l~F~lg~~-~~e~~V~~va~~L~~~~~~~~~vr~~~V~f~~v  247 (483)
T PRK01269        176 TQEDVLSLISGGFDSGVASYMLMR----R---GSRVHYCFFNLGGA-AHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPV  247 (483)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH----C---CCEEEEEEECCCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf             778689995278883888999984----5---98799999579986-889999999999999738888708999767999


Q ss_pred             -------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -------7877803788854555543200123442012345666566899998623654443322357641003579687
Q gi|254780546|r   93 -------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI  165 (423)
Q Consensus        93 -------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i  165 (423)
                             -+..-..-..|+.-|+.....+.+.++..+.||-.+.-.+-..+-++.--+               ..-+..+
T Consensus       248 ~~eI~~~v~~~~~~vv~KR~M~R~A~~iA~~~g~~ALVTGESLGQVASQTL~NL~~i~---------------~~~~~pV  312 (483)
T PRK01269        248 VGEILEKVDNGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLID---------------NVTDTLI  312 (483)
T ss_pred             HHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHH---------------HHCCCCE
T ss_conf             9999873876344399999999999999998599889855503456776787889988---------------7407740


Q ss_pred             ECCHHCCCHHHHHHHHHHHCC
Q ss_conf             101210428999998998189
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~~i  186 (423)
                      +|||+++.|+||.+.+++.|-
T Consensus       313 lRPLIg~DK~eII~~Ar~IGT  333 (483)
T PRK01269        313 LRPLIAMDKEDIIDLARQIGT  333 (483)
T ss_pred             ECCCCCCCHHHHHHHHHHHCH
T ss_conf             047667988999999998392


No 65 
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.14  E-value=6.3e-05  Score=53.85  Aligned_cols=145  Identities=13%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH-HHHHHH----HHHHCCCCEEEEEEE--
Q ss_conf             9983999966942489999999999986489972999999667798784689-999999----998718988999975--
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSD----VCSRLRIAHSVVSWK--   90 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e-~~~v~~----~~~~lgi~~~~~~~~--   90 (423)
                      ...++++=+|||.||-+-.+++-.    +   +.++.++|.+-  -|...++ .+.+..    .+...+-.......+  
T Consensus       174 t~Gk~l~LlSGGIDSPVA~~l~mk----R---G~~v~~v~f~~--~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~  244 (383)
T COG0301         174 TQGKVLLLLSGGIDSPVAAWLMMK----R---GVEVIPVHFGN--PPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFT  244 (383)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHH----C---CCEEEEEEECC--CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHH
T ss_conf             677489997078774999999985----6---98779999727--99851889999999986430246872289997629


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -------0478778037888545555432001234420123456665668999986236544433223576410035796
Q gi|254780546|r   91 -------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL  163 (423)
Q Consensus        91 -------~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~  163 (423)
                             ...+..-..-..|+.-|+.....+++.|+..+.||-.+...+-..+-++.--               ...-+.
T Consensus       245 ~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i---------------~~~t~~  309 (383)
T COG0301         245 EVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVI---------------DSVTNT  309 (383)
T ss_pred             HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH---------------HHCCCC
T ss_conf             99999986367530204789999999999999839839983686104667678889999---------------815587


Q ss_pred             EEECCHHCCCHHHHHHHHHHHCC
Q ss_conf             87101210428999998998189
Q gi|254780546|r  164 WISRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       164 ~i~RPLL~~~r~~l~~~~~~~~i  186 (423)
                      .++|||+++.|+||.+.+++.|.
T Consensus       310 pIlRPLI~~DK~eIi~~Ar~IgT  332 (383)
T COG0301         310 PVLRPLIGLDKEEIIEIARRIGT  332 (383)
T ss_pred             CEECCCCCCCHHHHHHHHHHHCC
T ss_conf             42314457998999999998297


No 66 
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.10  E-value=0.00012  Score=51.86  Aligned_cols=156  Identities=17%  Similarity=0.147  Sum_probs=95.2

Q ss_pred             HHHHHHH-HC--CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             9999998-52--79983999966942489999999999986489972999999667798784689999999998718988
Q gi|254780546|r    8 SVRFFVR-SL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH   84 (423)
Q Consensus         8 ~~~~~~~-~l--~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~   84 (423)
                      .+..|++ .+  ..-.+++|++|||.||+.-+.++.+.... +....++.++...++--  +..+.+.++..|+.+|+..
T Consensus        11 ~~v~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~-~~~~~~~~av~mP~~~~--~~~~~~da~~~~~~lg~~~   87 (268)
T COG0171          11 RLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGK-GDSKENVLAVRLPYGYT--VQADEEDAQDLAEALGIDY   87 (268)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEECCCCCC--CCCCHHHHHHHHHHHCCCE
T ss_conf             99999999999739998699766681999999999998565-65124326686788776--5347999999999829966


Q ss_pred             EEEEEECC---------CCC-------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99997504---------787-------78037888545555432001234420123456665668999986236544433
Q gi|254780546|r   85 SVVSWKNS---------KPQ-------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM  148 (423)
Q Consensus        85 ~~~~~~~~---------~~~-------~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~  148 (423)
                      .+..+...         ...       -..++.-.+.|-..++..+...+..++-|+|-..    .     ..|-..+  
T Consensus        88 ~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~sE----~-----~~Gy~Tk--  156 (268)
T COG0171          88 KEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNKSE----L-----ALGYFTK--  156 (268)
T ss_pred             EEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHH----H-----HCCCEEC--
T ss_conf             9975288899988766665234421127776450999999999998555978975884877----8-----6074432--


Q ss_pred             CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             223576410035796871012104289999989981893
Q gi|254780546|r  149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                                .+.+.-=+-|+-++.|.++.+.++..|++
T Consensus       157 ----------yGDg~~d~~Pi~~L~KtqV~~La~~l~ip  185 (268)
T COG0171         157 ----------YGDGAVDINPIADLYKTQVYALARHLGIP  185 (268)
T ss_pred             ----------CCCCCCCHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             ----------06764470541487589999999873999


No 67 
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.08  E-value=1.4e-05  Score=58.56  Aligned_cols=168  Identities=15%  Similarity=0.176  Sum_probs=92.6

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEE----EEEE
Q ss_conf             52799839999669424899999999999864899729999996677987846899999999987-189889----9997
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-LRIAHS----VVSW   89 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~-lgi~~~----~~~~   89 (423)
                      -++.-++|.|++|||+||.+||||+.++.++.+..+  |.|+|+|.--+-  ..-..+|++.... .++--.    .+.+
T Consensus        23 if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~--i~VlfiD~E~QY--s~TidyV~em~~~~~dv~~~~yWvcLPl   98 (407)
T COG3969          23 IFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDK--ISVLFIDWEAQY--SCTIDYVQEMRESYHDVIETFYWVCLPL   98 (407)
T ss_pred             HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCHHHH--HHHHHHHHHHHHCCCCCCCCCEEEEEEH
T ss_conf             884388389992378740589999999999819886--579997004555--5689999998730457555405999631


Q ss_pred             ----------------ECC--------CCCC-CCHHHH----------HHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHH
Q ss_conf             ----------------504--------7877-803788----------8545555432001-234420123456665668
Q gi|254780546|r   90 ----------------KNS--------KPQT-GLMAAA----------REARYALISEHAK-TINATLIMTAHTFDDQLE  133 (423)
Q Consensus        90 ----------------~~~--------~~~~-~~~~~a----------r~~r~~~~~~~~~-~~~~~~l~~ah~~dD~~E  133 (423)
                                      +..        -|.. -+.+.+          -+.....+..+.. +..+..+++|.-+|.-..
T Consensus        99 ~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRadESlN  178 (407)
T COG3969          99 TTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRADESLN  178 (407)
T ss_pred             HCCCCHHHCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHH
T ss_conf             10133221485240479998332003785211005787664000256599999999999833688618998623055578


Q ss_pred             HHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf             99998623654443-32235764100357968710121042899999899818932
Q gi|254780546|r  134 TVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW  188 (423)
Q Consensus       134 t~l~rl~r~sg~~g-~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w  188 (423)
                      -+.--..+..+-.. -+.+  .......+.++-+=|+-+..-++|=.+-...+..+
T Consensus       179 Rf~ai~~~~k~~~~~~~pW--tt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~y  232 (407)
T COG3969         179 RFNAIARKEKLRFADDKPW--TTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAY  232 (407)
T ss_pred             HHHHHHHHHHCCCCCCCCC--EEEECCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             8998877653124799885--00015887259987412100888999987607742


No 68 
>PTZ00323 NAD+ synthase; Provisional
Probab=97.97  E-value=0.00025  Score=49.64  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHH----C--CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             6989999999985----2--799839999669424899999999999864899729999996677987846899999999
Q gi|254780546|r    3 LSPIESVRFFVRS----L--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV   76 (423)
Q Consensus         3 ~~p~~~~~~~~~~----l--~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~   76 (423)
                      +.|.+-|++...-    +  ++-..++|++|||.||...+.++.+-......+..++..+..-.   ..|+...+..++.
T Consensus        24 ~dp~~eI~~rv~fLrDYv~k~GfkgvVLGlSGGIDSAl~aaLA~~Alg~env~~~r~~gv~~P~---~ss~~s~~~a~~~  100 (294)
T PTZ00323         24 FDPVAWIEMKCAKLNEYMRRCGLKACVTSVSGGIDSAVVLALCSRAMRMPNSPIVRNVGICQPI---CSSAWALARGREN  100 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---CCCHHHHHHHHHH
T ss_conf             8989999999999999999829985999586369999999999998655457530356776785---4576659879999


Q ss_pred             HHHCCCCEEEEEE
Q ss_conf             9871898899997
Q gi|254780546|r   77 CSRLRIAHSVVSW   89 (423)
Q Consensus        77 ~~~lgi~~~~~~~   89 (423)
                      ++.+|+...+...
T Consensus       101 a~~~g~~~~~~~~  113 (294)
T PTZ00323        101 IAACGATEVVVDQ  113 (294)
T ss_pred             HHHCCCCEEECCC
T ss_conf             9976885232360


No 69 
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily  including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide.
Probab=97.95  E-value=7.7e-06  Score=60.33  Aligned_cols=69  Identities=32%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
Q ss_conf             99996694248999999999998648997299999966779878468999999999871898899997504787780378
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA  101 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~  101 (423)
                      |+|++|||.||..++++++++.  .  ...++.+++++                                          
T Consensus         1 ilv~~Sgg~dS~~~~~la~~~~--~--~~~~~~~~~~~------------------------------------------   34 (86)
T cd01984           1 ILVALSGGLDSSVLLHLAKRLK--S--GGPEVVALVVV------------------------------------------   34 (86)
T ss_pred             CEEEECCCCCHHHHHHHHHHHH--C--CCCEEEEEEHH------------------------------------------
T ss_conf             9788617853899999999852--5--99808976389------------------------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88545555432001234420123456665668999986
Q gi|254780546|r  102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS  139 (423)
Q Consensus       102 ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl  139 (423)
                         .+.+.+.+...+.++..+++|||.+|+.++..+..
T Consensus        35 ---~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~   69 (86)
T cd01984          35 ---AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS   69 (86)
T ss_pred             ---HHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCC
T ss_conf             ---99999999877608988998677324533101665


No 70 
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.93  E-value=0.0001  Score=52.36  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             CCCCEEEEEECCCHHHH-HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             79983999966942489-999999999986489972999999667798784689999999998718988999975
Q gi|254780546|r   17 VYPAHILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~-aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      +.-.+++|++|||.||+ |||.++.. ...-+.+.-+|++++.=-  +.-|+.-.....++|+.|||.+..+.++
T Consensus       360 ~g~~~vViGLSGGiDSaLaLLVaa~A-~d~Lg~~r~~V~~vtMPs--~~TS~~S~~dA~~La~~LGi~~~~I~I~  431 (678)
T PRK02628        360 TGIKKVVIGISGGLDSTLALLVAAKA-FDRLGLPRKNILAYTMPG--FGTTDRTKNNAVALMKALGVTAREIDIR  431 (678)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHH-HHHHCCCHHCEEEEECCC--CCCCHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf             49981899677764479999999999-998489712248997788--7657878999999999729977997629


No 71 
>PRK13981 NAD synthetase; Provisional
Probab=97.85  E-value=0.00017  Score=50.89  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC----
Q ss_conf             7998399996694248999999999998648997299999966779878468999999999871898899997504----
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----   92 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~----   92 (423)
                      +.-.+++|++|||.||...+.++.+-+.     .-+|++++.=..  ..|+.-.+..+++|+.|||.++++.++..    
T Consensus       279 ~gf~~vviGLSGGiDSaL~aaiA~dALG-----~~nV~~v~MPs~--~tS~~s~~dA~~La~~LGi~~~~i~I~~~~~~~  351 (543)
T PRK13981        279 NGFPGVVLGLSGGIDSALVAAIAVDALG-----AENVRAVMMPSR--YTSDESLDDAAALARNLGVRYDIIPIEPAFEAF  351 (543)
T ss_pred             HCCCEEEEECCCCHHHHHHHHHHHHHHC-----HHHEEEEECCCC--CCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH
T ss_conf             0897499976788359999999998538-----343788645877--786656999999999959974875149999999


Q ss_pred             -----------C---CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             -----------7---87780378885455554320012344201234566656689999862365444332235764100
Q gi|254780546|r   93 -----------K---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL  158 (423)
Q Consensus        93 -----------~---~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~  158 (423)
                                 .   ...|+|+..|   -..+...+.+.|.-.+.||    |-.|.-    ..-+...|-    |+    
T Consensus       352 ~~~l~~~f~~~~~dvt~ENiQAR~R---~~iLm~laN~~g~lvl~Tg----nkSE~a----vGy~TlyGD----~~----  412 (543)
T PRK13981        352 EAALAPLFAGTEPDITEENLQSRIR---GTLLMALSNKFGSLVLTTG----NKSEMA----VGYATLYGD----MA----  412 (543)
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHH---HHHHHHHHHCCCCEEECCC----CHHHHH----HCHHHHCCC----CC----
T ss_conf             9974044168766652234548889---9999998733896796478----672787----474653376----55----


Q ss_pred             CCCCCEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf             3579687101210428999998998189
Q gi|254780546|r  159 YDLNLWISRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       159 ~~~~~~i~RPLL~~~r~~l~~~~~~~~i  186 (423)
                        +   -+-|+-+++|.++.+.++-.+-
T Consensus       413 --g---~~avi~dv~KT~V~~L~r~~n~  435 (543)
T PRK13981        413 --G---GFAPIKDVYKTLVYRLCRWRNT  435 (543)
T ss_pred             --C---CCCCCCCCCHHHHHHHHHHHHH
T ss_conf             --6---7430368659999999999865


No 72 
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=97.84  E-value=0.00017  Score=50.82  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=96.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHH-HHHHHHHHHH---HCCCCEEEE--EEEC--
Q ss_conf             8399996694248999999999998648997299999966779878468-9999999998---718988999--9750--
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS---RLRIAHSVV--SWKN--   91 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~-e~~~v~~~~~---~lgi~~~~~--~~~~--   91 (423)
                      .+++.=+|||-||=+-.+++=+    +   +.+++++|.+-  .|...+ -.+.|+.++.   ..+..+.+.  .++-  
T Consensus       187 Gkvl~LlSGGiDSPVAaf~~m~----R---Gc~V~~vhf~~--~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~  257 (391)
T TIGR00342       187 GKVLALLSGGIDSPVAAFLAMK----R---GCRVVAVHFFN--EPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTD  257 (391)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHH----C---CCEEEEEEECC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHH
T ss_conf             3632041188351679999966----3---87799997328--8552468999999999988540003799999854389


Q ss_pred             -------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             -------4787780378885455554320012344201234566656689999862365444332235764100357968
Q gi|254780546|r   92 -------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW  164 (423)
Q Consensus        92 -------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~  164 (423)
                             ..+..-..-..|+.-|+.....+...+|.+++||-.+.-.+=-.+-++.--.               ..-+..
T Consensus       258 ~~~~~~~~~~e~~~~v~~rR~M~~~A~~~ae~~g~~A~VTGe~LGQVASQTL~Nl~vI~---------------~~~~~~  322 (391)
T TIGR00342       258 VQEEIIEIIPEKYTMVLCRRLMLKIASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQ---------------AVVNTP  322 (391)
T ss_pred             HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH---------------HCCCCC
T ss_conf             99999841899878874066799999988886099489976634203777888999997---------------237874


Q ss_pred             EEC-CHHCCCHHHHHHHHHHHC
Q ss_conf             710-121042899999899818
Q gi|254780546|r  165 ISR-PFLRCRREDIRSFLLQRN  185 (423)
Q Consensus       165 i~R-PLL~~~r~~l~~~~~~~~  185 (423)
                      |+| ||.++.|++|.+.|++.|
T Consensus       323 iL~RPLIg~DK~~Ii~~Ak~Ig  344 (391)
T TIGR00342       323 ILRRPLIGMDKEEIIELAKEIG  344 (391)
T ss_pred             EEECCCCCCCHHHHHHHHHHCC
T ss_conf             2407755479789999974139


No 73 
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.77  E-value=0.00011  Score=52.07  Aligned_cols=148  Identities=17%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC---CC--
Q ss_conf             8399996694248999999999998648997299999966779878468999999999871898899997504---78--
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---KP--   94 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~---~~--   94 (423)
                      -+++||+|||+||+|-..+++..            .++||.|-----++--..+...|.-+|+.+..+.-+..   +.  
T Consensus        61 ~kiaVA~SGG~DSsas~iilR~~------------g~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGal  128 (255)
T COG1365          61 PKIAVAYSGGVDSSASAIILRWA------------GFTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGAL  128 (255)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHH------------CEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             43899842786427889998862------------104146321387788678999989972577789989999986320


Q ss_pred             --CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE-ECCHHC
Q ss_conf             --77803788854555543200123442012345666566899998623654443322357641003579687-101210
Q gi|254780546|r   95 --QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLR  171 (423)
Q Consensus        95 --~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i-~RPLL~  171 (423)
                        .--.+-.+-..-.......+++.++..+++|.-+                     +.|........+-+++ +--++.
T Consensus       129 nGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlL---------------------s~G~~svy~eD~i~rlnlPAflA  187 (255)
T COG1365         129 NGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLL---------------------STGYGSVYREDGIFRLNLPAFLA  187 (255)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CCCCCCEECCCCEEEECCHHHHH
T ss_conf             587787523789999999999985387089974632---------------------34663212058879972588885


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             428999998998189320266786422101899976
Q gi|254780546|r  172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF  207 (423)
Q Consensus       172 ~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~  207 (423)
                      .+|.|+++.++.+++..       +.+|-=..+|..
T Consensus       188 ltK~Elr~il~~~~~e~-------~~kygCPll~e~  216 (255)
T COG1365         188 LTKDELRSILKWNGYEL-------EMKYGCPLLREV  216 (255)
T ss_pred             HCCHHHHHHHHHCCCCC-------HHCCCCCHHHHH
T ss_conf             17199999987138430-------011588358999


No 74 
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=97.74  E-value=0.0016  Score=44.00  Aligned_cols=147  Identities=10%  Similarity=0.067  Sum_probs=87.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH----HHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             3999966942489999999999986489972999999667798784----689999999998718988999975047877
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT   96 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s----~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~   96 (423)
                      |+++-.|||+||+--++.+.+    .+. .....+.++...  .+|    .--.+.+...++.+|||+....++..+   
T Consensus         1 Kv~~l~SGGKDS~lAl~~a~~----~g~-~v~~L~~~~~~~--~~~~~~H~~~~~l~~~qAealgiPl~~~~~~~~~---   70 (194)
T cd01994           1 KVVALISGGKDSCYALYRALE----EGH-EVVALLNLTPEE--GSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE---   70 (194)
T ss_pred             CEEEEECCCHHHHHHHHHHHH----CCC-EEEEEEEEECCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCC---
T ss_conf             989997785999999999998----699-259999996399--8805250557899999999859966999668987---


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHH
Q ss_conf             80378885455554320012344201234566656689999862365444332235764100357968710121042899
Q gi|254780546|r   97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED  176 (423)
Q Consensus        97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~  176 (423)
                         +.... .+.......++.++..+++|.-.-+..-+..-+.+...                  ++..+-||-+....+
T Consensus        71 ---~~~~~-~l~~~L~~~k~~gi~~vv~GdI~s~~qr~~~e~~c~~l------------------gl~~~~PLW~~~~~~  128 (194)
T cd01994          71 ---EDEVE-DLKELLRKLKEEGVDAVVFGAILSEYQRTRVERVCERL------------------GLEPLAPLWGRDQEE  128 (194)
T ss_pred             ---CHHHH-HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC------------------CCEEECHHCCCCHHH
T ss_conf             ---17999-99999999997599599999633288999999999973------------------988870010799999


Q ss_pred             HHHHHHHHCCCCC---CCCCCCCCCC
Q ss_conf             9998998189320---2667864221
Q gi|254780546|r  177 IRSFLLQRNISWC---EDPSNTDDRF  199 (423)
Q Consensus       177 l~~~~~~~~i~wv---eDpSN~d~~f  199 (423)
                      +..-.-+.|+..+   -|..-.|..|
T Consensus       129 ll~e~i~~Gf~aiiv~V~a~~L~~~~  154 (194)
T cd01994         129 LLREMIEAGFKAIIIKVAAEGLDESW  154 (194)
T ss_pred             HHHHHHHCCCEEEEEEEECCCCCHHH
T ss_conf             99999987990999995026899689


No 75 
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.66  E-value=0.00094  Score=45.57  Aligned_cols=130  Identities=9%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             99839999669424899999999999864899729999996677987846899999999987189889999750478778
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG   97 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~   97 (423)
                      ...++++=+|||- |-+-.+++-.    +   +.++..+|++++  +.+.+-+..+.+...+++......-+.. +   .
T Consensus       178 s~Gk~l~LlSGGi-SPVAa~~mmK----R---G~~v~~vhf~~~--~~~~~kv~~l~~~L~~y~~~~~~~~~~~-~---~  243 (310)
T PRK08384        178 TQGKMVGLLSDEL-SAVAIFLMMK----R---GVEVIPVHIGMG--EKNLEKVRKLWNQLKKYSYGSKGRLVVV-K---N  243 (310)
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHH----C---CCEEEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCEEEEEE-C---H
T ss_conf             7884899953886-3999999985----6---987999985688--7899999999999998679984699996-6---5


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHH
Q ss_conf             03788854555543200123442012345666566899998623654443322357641003579687101210428999
Q gi|254780546|r   98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI  177 (423)
Q Consensus        98 ~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l  177 (423)
                               +......+++.++..+.||-.+...+-..+-++.--               ...-+..++|||+++.|+||
T Consensus       244 ---------~~~a~~ia~~~~~~alvTGEsLGQVASQTl~nl~~i---------------~~~~~~PVlRPLIg~DK~EI  299 (310)
T PRK08384        244 ---------FERVNKIIRDFGAKGVVKGLRPEQLASETLENIYED---------------SRMFDVPVYYPLIALPDEYI  299 (310)
T ss_pred             ---------HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH---------------HHCCCCCCCCCCCCCCHHHH
T ss_conf             ---------999999999859989997741255454579889999---------------73048873038568998999


Q ss_pred             HHHHHHHC
Q ss_conf             99899818
Q gi|254780546|r  178 RSFLLQRN  185 (423)
Q Consensus       178 ~~~~~~~~  185 (423)
                      .+.+++.|
T Consensus       300 I~~Ar~IG  307 (310)
T PRK08384        300 EKVKEKIG  307 (310)
T ss_pred             HHHHHHCC
T ss_conf             99998638


No 76 
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.65  E-value=0.0002  Score=50.27  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             527998399996694248999999999998648997299999966779878468999999999871898899997504
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      .+...-.|++-+|||.||++++.++....    .  -.+.+++|...  ...-+|..+++++++.+|++|++..++..
T Consensus       254 rl~sDVpvG~~LSGGlDSS~I~a~~~~~~----~--~~i~tfsi~f~--~~~~DE~~~A~~vA~~~g~~h~~~~~~~~  323 (628)
T TIGR03108       254 RMVADVPLGAFLSGGVDSSAVVALMAGLS----D--TPVNTCSIAFD--DPAFDESAYARQVAERYGTNHRVETVDPD  323 (628)
T ss_pred             HHCCCCCEEEEECCCCCHHHHHHHHHHHC----C--CCCCEEEEECC--CCCCCHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf             80578856876468863689999999842----9--98643665348--88754369999999860876479977989


No 77 
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.56  E-value=0.00076  Score=46.21  Aligned_cols=106  Identities=22%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH-HHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             5279983999966942489999999999986489972999999667798784-689999999998718988999975047
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s-~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      .+.....+++-+|||.||+.++.+++.......     ....+|+.   +++ ..|..+.+..++.+|.+|+...+....
T Consensus       226 r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~~-----~~~fsvg~---~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e  297 (542)
T COG0367         226 RLVADVPVGVFLSGGLDSSLIAAIAAEELGKEG-----KTTFTVGF---EDSDSPDAKYARAVAKFLGTPHHEIILTNEE  297 (542)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC-----CEEEEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf             621588789996776229999999998623455-----21589854---8999707999999999859985799617899


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             ------------8778037888545555432001234420123456665
Q gi|254780546|r   94 ------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        94 ------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                                  ...+..  .-..-..++...+++.+..++++|.-+|.
T Consensus       298 ~~~~~~~vv~~~~~p~~~--~~~~ply~~~~~a~~~g~kVvLSGeGADE  344 (542)
T COG0367         298 LLNALPEVVKALDTPGGM--AASIPLYLLSRKARAEGEKVVLSGEGADE  344 (542)
T ss_pred             HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             999999999870788620--04579999998765338789823874888


No 78 
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.55  E-value=0.00037  Score=48.47  Aligned_cols=111  Identities=19%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             52799839999669424899999999999864899-------72999999667798784689999999998718988999
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-------KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~-------~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      ++.....|++-+|||.||+.++.+++.........       ...++..+|  |+ ++| .|..+.+.+++.+|..|+.+
T Consensus       223 rL~sDvpvG~~LSGGLDSSlIaala~k~~~~~~~~~~~~~~~~~~l~tFsi--G~-~~s-~D~~~Ar~vA~~lgt~h~ei  298 (555)
T PRK09431        223 RLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAV--GL-EGS-PDLKAAREVADYLGTVHHEI  298 (555)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE--CC-CCC-CHHHHHHHHHHHHCCCCEEE
T ss_conf             835688624320577067999999998520244332222234678753660--47-998-14999999999829956599


Q ss_pred             EEECCCCCCCCHH-------------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             9750478778037-------------888545555432001234420123456665
Q gi|254780546|r   88 SWKNSKPQTGLMA-------------AAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        88 ~~~~~~~~~~~~~-------------~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      .++...-...++.             .+...-| ++....+..++.++++|.-+|.
T Consensus       299 ~~t~~d~~~~l~~vi~~lE~~d~~~~~asip~y-llsk~i~~~gvKVvLSGeGADE  353 (555)
T PRK09431        299 HFTVQEGLDALRDVIYHLETYDVTTIRASTPMY-LMSRKIKAMGIKMVLSGEGADE  353 (555)
T ss_pred             EECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHH
T ss_conf             954799999999999874146875025689999-9999999639879992775044


No 79 
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.50  E-value=0.00027  Score=49.38  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             52799839999669424899999999999864899729999996677987-84689999999998718988999975047
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      ++.....|++-+|||.||++++.++.+..    ..  ++..++|...-.+ +..+|..+++.+++.+|.+|+.+.++...
T Consensus       256 rl~sDvpvg~~LSGGlDSS~i~a~~~~~~----~~--~i~tfs~~f~~~~~~~~dE~~~a~~va~~~~~~h~~~~~~~~~  329 (589)
T TIGR03104       256 RLVADVPVGVLLSGGLDSSLIVGLLAEAG----VD--GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHR  329 (589)
T ss_pred             HHHCCCCCCEECCCCCCHHHHHHHHHHHC----CC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf             97446763000178754389999999956----99--9852788724688776667999999999738785799957178


Q ss_pred             --------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             --------------8778037888545555432001234420123456665
Q gi|254780546|r   94 --------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        94 --------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                                    |-.+...   -.-| .+.+.+++ ...++++|.-.|.
T Consensus       330 ~~~~l~~~~~~~deP~~~~~~---~~~~-~l~~~~~~-~~kV~LsG~GaDE  375 (589)
T TIGR03104       330 VLPALPEAVAAMSEPMVSHDC---VAFY-LLSEEVSK-HVKVVQSGQGADE  375 (589)
T ss_pred             HHHHHHHHHHCCCCCCCCCHH---HHHH-HHHHHHCC-CCEEEEEEECCCC
T ss_conf             999889988526898768306---8899-99987328-8369995203332


No 80 
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.41  E-value=0.014  Score=37.34  Aligned_cols=142  Identities=13%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHH----CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             79983999966942489999999999986----48997299999966779878468999999999871898899997504
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSD----RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~----~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      .+...++|++|||.||.+.+.+++.....    .......+.++..-++... +..+++   ..++-++..+. ..++..
T Consensus        38 ~g~~g~VlGLSGGIDSAvta~L~~~Av~al~~~~~~~~~~~iav~mP~~~~~-~~~da~---~~~~~i~~~~~-~~i~I~  112 (274)
T PRK00768         38 SGLKTLVLGISGGQDSTLAGRLAQLAVEELRAETGDASYQFIAVRLPYGVQA-DEDDAQ---DALAFIQPDEV-LTVNIK  112 (274)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CHHHHH---HHHHHCCCCEE-EEECCC
T ss_conf             4998399818857688999999999999865304766422689768988657-999999---99852276604-886170


Q ss_pred             C--------------C-----CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             7--------------8-----77803788854555543200123442012345666566899998623654443322357
Q gi|254780546|r   93 K--------------P-----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        93 ~--------------~-----~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~  153 (423)
                      .              .     .+|+++   +.|.-.++..+...+..++-|+.--    |.               +.|.
T Consensus       113 ~~~d~~~~~l~~~~~~~~d~~~~Niqa---RiRM~~LY~~An~~g~LVlGTgNks----E~---------------~vGY  170 (274)
T PRK00768        113 PAVDASVAALRAAGIELSDFVKGNIKA---RERMIAQYAIAGARGGLVVGTDHAA----EA---------------ITGF  170 (274)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHCCCCEEECCCCHH----HH---------------HCCC
T ss_conf             999999999987277511678888579---8999999999827899886488640----44---------------4085


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf             6410035796871012104289999989981893
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS  187 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~  187 (423)
                      .  ...+.+.-=+-|+-++.|.|+++.++..|+|
T Consensus       171 f--TkYGDg~~Di~PI~dL~KteV~~lA~~LgvP  202 (274)
T PRK00768        171 F--TKFGDGGADLLPLFGLNKRQGRALLAALGAP  202 (274)
T ss_pred             E--EEECCCCCCHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             0--1026775173763256199999999995979


No 81 
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426   These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=97.38  E-value=0.00073  Score=46.35  Aligned_cols=116  Identities=19%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCHHHHHH--------HHHHHHHHCCCCEE
Q ss_conf             52799839999669424899999999999864899-7299999966779878468999--------99999987189889
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR--------YVSDVCSRLRIAHS   85 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~-~~~l~a~~vdHglr~~s~~e~~--------~v~~~~~~lgi~~~   85 (423)
                      +|..-..|++=+|||.||+.+.-++.....+.... ...|+..+|.-.-.+..=+|..        +.+++++.+|+.|+
T Consensus       307 rl~aDvpvG~~LSGGlDSS~vaa~a~~~~~~~~~~W~~~~~tFsigf~~~~~~~~Es~l~P~~D~P~A~~vA~~~G~~h~  386 (646)
T TIGR01536       307 RLVADVPVGVLLSGGLDSSLVAAIARREAPSEGVDWKGPVKTFSIGFEGDSKDFDESKLRPDDDQPYARKVADELGTEHH  386 (646)
T ss_pred             HCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             32005606888717167999999999976764331177434788651778765300257899861899999998498324


Q ss_pred             EEEEECCC------------CCCCCHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHH
Q ss_conf             99975047------------877803788854555543200123-4420123456665
Q gi|254780546|r   86 VVSWKNSK------------PQTGLMAAAREARYALISEHAKTI-NATLIMTAHTFDD  130 (423)
Q Consensus        86 ~~~~~~~~------------~~~~~~~~ar~~r~~~~~~~~~~~-~~~~l~~ah~~dD  130 (423)
                      .+.++...            .+-...+..-..=..++...+++. +..+++.|--+|.
T Consensus       387 ~~~~s~~e~~~~l~~v~~~~e~y~p~~~~~~~P~Yl~s~~ar~~Tg~kV~LSGeGaDE  444 (646)
T TIGR01536       387 EVLISEEEVLKALPEVIYHLETYDPTAIRASIPLYLLSKLAREDTGVKVVLSGEGADE  444 (646)
T ss_pred             EEEECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             8984589999998887654248854303112358999999996288389974866355


No 82 
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=97.33  E-value=0.0083  Score=38.88  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=39.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH--HHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             3999966942489999999999986489972999999667798784--68999999999871898899997
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s--~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      |+++-+|||+||+--++.+.+    . + .....+.++.+.-..-.  .--.+.++..++.+|||+.....
T Consensus         2 K~~~l~SGGKDS~~Al~~a~~----~-~-~v~~L~t~~~~~~ds~~~H~~~~~l~~~qA~algiPl~~~~~   66 (219)
T pfam01902         2 KVAALYSGGKDSNYALYWALK----E-I-EVPYLVSMKSENKESYMFHEPNLHLTKLLAEALGIPIIKLYT   66 (219)
T ss_pred             CEEEEECCCHHHHHHHHHHHH----C-C-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             399997286999999999987----1-9-837999996379981026157889999999975996899967


No 83 
>PTZ00077 asparagine synthetase; Provisional
Probab=97.26  E-value=0.0021  Score=43.06  Aligned_cols=74  Identities=19%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC-----------------------------------CCCCEEEEEEEEC
Q ss_conf             52799839999669424899999999999864-----------------------------------8997299999966
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-----------------------------------SFGKIKFSAISVD   59 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~-----------------------------------~~~~~~l~a~~vd   59 (423)
                      +|...-.|++-+|||.||+....+++...+..                                   ...+.+++.++| 
T Consensus       233 rL~sDVPvG~lLSGGLDSSlIaAia~k~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~tFsI-  311 (610)
T PTZ00077        233 RLMGDVPFGILLSGGLDSSIIAAILAKHLKIIDGEGGGGIQGGGAAAAHNAAHEANNNNGEDNCGNNNADPCHLKSFSI-  311 (610)
T ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-
T ss_conf             8225672366634770589999999986542011122222244321000111112444432212356667444226886-


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             779878468999999999871898899997504
Q gi|254780546|r   60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        60 Hglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                       |+ ++| .|....+++++.+|..|+...++.+
T Consensus       312 -Gl-~gs-pDl~~Ar~vA~~lGt~Hhe~~~t~e  341 (610)
T PTZ00077        312 -GL-KGS-PDLKAAKEVAEFLGIEHTEFHFTVE  341 (610)
T ss_pred             -EC-CCC-CHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf             -25-898-2489999999983883459997779


No 84 
>pfam09179 TilS TilS substrate binding domain. This domain is found in the tRNA(Ile) lysidine synthetase (TilS) protein.
Probab=97.13  E-value=0.0036  Score=41.49  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---CCCCCEEECCCEEEEEECCEEEE
Q ss_conf             778337557898999999999835899998899999999986---69984561075799988998999
Q gi|254780546|r  254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK---SGKRGCVSIGRVVIDRRANFLWI  318 (423)
Q Consensus       254 ~~~~~~~~~~~~r~l~~~l~~~~g~~~~p~~~~l~~ll~~l~---~~~~~~~tl~g~~i~~~~~~l~i  318 (423)
                      ..+..++.+.+.+++|.|+...|  ..+|+.++++++++.+.   .|.++.+.++++.++++++.+|+
T Consensus         4 ~~l~~l~~~r~~~lLR~wL~~~g--~~~Ps~~~l~~i~~~l~~a~~d~~p~l~~~~~~irRy~~~Lyl   69 (69)
T pfam09179         4 AALAALSPARQRNLLRYWLAQLG--LPMPSQAQLEEILRQLLLAKEDAQPQLPLGGGELRRYRGRLYL   69 (69)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCEEEC
T ss_conf             88775999999999999999879--9999999999999999837789981899899999983899639


No 85 
>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784   Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=97.12  E-value=0.0025  Score=42.60  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             8399996694248999999999998648997299999966779878468999999999871898899997504
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      .+=++=+|+|+||++||||+..--.  |. .+-.-.+|||-|..-  .+-..+=-...++.++.+.+...+..
T Consensus        20 ~~PV~LyS~GKDS~VlLHLA~KaF~--Pg-~~PFplLHvDTgw~f--~E~~~fRD~~~~~~~~~L~v~~~~~~   87 (295)
T TIGR02039        20 ERPVLLYSIGKDSSVLLHLARKAFY--PG-RLPFPLLHVDTGWKF--REMIAFRDELVAKYGLELIVHSNEEG   87 (295)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCC--CC-CCCCCEEEEECCCCH--HHHHHHHHHHHHHHCCEEEEEECHHH
T ss_conf             7976898657347999998764058--88-879735774066327--89999999999870976888505023


No 86 
>KOG1706 consensus
Probab=96.98  E-value=0.0099  Score=38.33  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE-EEECCCC-
Q ss_conf             79983999966942489999999999986489972999999667798784689999999998718988999-9750478-
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV-SWKNSKP-   94 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~-~~~~~~~-   94 (423)
                      ....++++|+|||.|-++.|..|++.       ++++.+..-|-|-    .++-+..++-+-+.|-.-.+. .+..+.- 
T Consensus         3 ~~~~~vVLAySGgLDTscil~WLkeq-------GyeViay~AnvGQ----~edfe~ar~kAlk~Gakk~~~ed~~~eFve   71 (412)
T KOG1706           3 SSKKSVVLAYSGGLDTSCILAWLKEQ-------GYEVIAYLANVGQ----KEDFEEARKKALKSGAKKVVVEDVREEFVE   71 (412)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHC-------CCEEEEEECCCCC----HHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf             77745999953886723435888862-------9658984001562----666899997533127607986131588876


Q ss_pred             ---CCCCHHHHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH----HHHCCCCCCCCC--CCCCCCCCCCCCCCE
Q ss_conf             ---77803788854-55554320012344201234566656689999----862365444332--235764100357968
Q gi|254780546|r   95 ---QTGLMAAAREA-RYALISEHAKTINATLIMTAHTFDDQLETVYM----RSQRDYAEKGMG--LSGMCDTILYDLNLW  164 (423)
Q Consensus        95 ---~~~~~~~ar~~-r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~----rl~r~sg~~g~~--l~~~~~~~~~~~~~~  164 (423)
                         -+.+|+.|-.. +|-+-..      ...-+.+|.+-|.++..=.    ....|.|-+...  |+-    ....-++.
T Consensus        72 dfi~Pa~qs~a~YEd~YLLGTS------laRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~----ysl~P~~k  141 (412)
T KOG1706          72 DFIWPALQSSALYEDRYLLGTS------LARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTF----YSLKPDVK  141 (412)
T ss_pred             HCCHHHHHHCCHHHCEEEECCC------CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEE----ECCCCCCE
T ss_conf             0201644311210101342244------4431343335357765175033035566777402466533----11477630


Q ss_pred             EECCHH-------CCCHHHHHHHHHHHCCCC-----------------------CCCCCCCCCCC
Q ss_conf             710121-------042899999899818932-----------------------02667864221
Q gi|254780546|r  165 ISRPFL-------RCRREDIRSFLLQRNISW-----------------------CEDPSNTDDRF  199 (423)
Q Consensus       165 i~RPLL-------~~~r~~l~~~~~~~~i~w-----------------------veDpSN~d~~f  199 (423)
                      ++-|+-       .-.|+++.+|++++|||.                       .|||+|+-++-
T Consensus       142 viapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~pwsmDeNl~HiSyEagiLEdP~nqpp~~  206 (412)
T KOG1706         142 VIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNPWSMDENLMHISYEAGILEDPKNQPPKD  206 (412)
T ss_pred             EECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             33354546788764271478999986499766568887654411001000035334867799810


No 87 
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=96.93  E-value=0.0038  Score=41.24  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC----CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             399996694248999999999998648997299999966779----8784689999999998718988999975047877
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT   96 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl----r~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~   96 (423)
                      ||+||+||...|-.++--..+++.+.   +.+++++||+-.-    ..+..+..+...+.++++|.+..++.-  .    
T Consensus         1 rILV~vd~s~~s~~lir~a~rlA~~~---~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~~~--~----   71 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRL---KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPG--D----   71 (124)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--C----
T ss_conf             99999589850799999999999964---99899999955975658979999999999999985998999947--9----


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             80378885455554320012344201234566656689999862365444
Q gi|254780546|r   97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK  146 (423)
Q Consensus        97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~  146 (423)
                      +.        ...+.+.+++.+++.+++|++..--    +.++++||-.+
T Consensus        72 d~--------~~~I~~~A~~~~~t~IVlG~~~~~~----~~~~~~gSv~~  109 (124)
T cd01987          72 DV--------AEAIVEFAREHNVTQIVVGKSRRSR----WRELFRGSLVD  109 (124)
T ss_pred             CH--------HHHHHHHHHHCCCCEEEECCCCCCH----HHHHHCCCHHH
T ss_conf             98--------9999999998499899976898854----68872388999


No 88 
>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=96.91  E-value=0.017  Score=36.65  Aligned_cols=156  Identities=18%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             CHHHHHHH---HHHHC---C-CCCEEEEEECCCHHH--------HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHH
Q ss_conf             98999999---99852---7-998399996694248--------999999999998648997299999966779878468
Q gi|254780546|r    4 SPIESVRF---FVRSL---V-YPAHILVAVSGGSDS--------MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD   68 (423)
Q Consensus         4 ~p~~~~~~---~~~~l---~-~~~~i~vAvSGG~DS--------~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~   68 (423)
                      .+.+-+.+   |+..-   . ....+++++|||.||        ++...++.+...     ..+.+++.+-|+-. .+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~-----~~~~~~~~~p~~~~-~~~~   77 (286)
T TIGR00552         4 KVVEELEDAVDFLRGYVKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALG-----KEQNHALLLPHSNT-TPED   77 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC-----HHHHEEEEECCCCC-CCHH
T ss_conf             37899999898888887632576504673047620356778999999999985046-----11420332146678-8412


Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECC--------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999871898899997504--------------787780378885455554320012344201234566656689
Q gi|254780546|r   69 EVRYVSDVCSRLRIAHSVVSWKNS--------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET  134 (423)
Q Consensus        69 e~~~v~~~~~~lgi~~~~~~~~~~--------------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et  134 (423)
                      +.+....+|+.+|++.........              .+.....+...+.|...++..+...+...+-|+|-..-..  
T Consensus        78 d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~~e~~~--  155 (286)
T TIGR00552        78 DVQDALALAEPLGINYKTIDIAPIAASFQAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNKSELLL--  155 (286)
T ss_pred             HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH--
T ss_conf             179999988740544211130467788776420344333102332224788999998873101635640461344543--


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf             9998623654443322357641003579687101210428999998998189
Q gi|254780546|r  135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       135 ~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i  186 (423)
                             |-+            ...+.+.-=+.|+-.+.|.+....++..|+
T Consensus       156 -------Gy~------------t~~Gdg~~d~~p~~~l~k~~~~~l~~~l~~  188 (286)
T TIGR00552       156 -------GYF------------TKYGDGGCDILPLGGLFKTEVYELAKRLGV  188 (286)
T ss_pred             -------HHH------------HHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -------200------------101442000345532237889999998175


No 89 
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=96.60  E-value=0.067  Score=32.47  Aligned_cols=64  Identities=11%  Similarity=0.056  Sum_probs=38.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH----HHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             3999966942489999999999986489972999999667798784----6899999999987189889999750
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCSRLRIAHSVVSWKN   91 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s----~~e~~~v~~~~~~lgi~~~~~~~~~   91 (423)
                      |+++=+|||+||.-.+|.+.+    .+   .+|..+..=+--+++|    .--.+.+...++.+|||........
T Consensus         2 k~~aL~SGGKDS~~Al~~a~~----~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g   69 (223)
T COG2102           2 KVIALYSGGKDSFYALYLALE----EG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG   69 (223)
T ss_pred             CEEEEEECCCHHHHHHHHHHH----CC---CEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             689998167188999999997----59---836899998159987044222256799999874488359983476


No 90 
>KOG0573 consensus
Probab=95.57  E-value=0.087  Score=31.66  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=28.8

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf             839999669424899999999999864899729999996677
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC   61 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg   61 (423)
                      ++|.|-+|||.|||++++++++....+  .+++  -+.|-.+
T Consensus       251 s~VcVlfSGGvDs~vvA~l~h~~vp~n--e~Id--LINVaF~  288 (520)
T KOG0573         251 SNVCVLFSGGVDSTVVAVLAHYVVPEN--EPID--LINVAFG  288 (520)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCC--CCEE--EEEEECC
T ss_conf             767999648840899999998606988--8636--8986025


No 91 
>KOG0571 consensus
Probab=95.25  E-value=0.15  Score=30.02  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             8527998399996694248999999999998648-997299999966779878468999999999871898899997504
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~-~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      ++|-...+++|-+|||.||+..+-++....++.. .-+..++.+.|  |+- +|.+ ....+++++-+|.+|+......+
T Consensus       220 KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaI--Gle-~SPD-L~aarkVAd~igt~Hhe~~ft~q  295 (543)
T KOG0571         220 KRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAI--GLE-DSPD-LLAARKVADFIGTIHHEHTFTIQ  295 (543)
T ss_pred             HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCC-CCHH-HHHHHHHHHHHCCCCEEEEECHH
T ss_conf             9863168615895077318999999999998766412787547885--289-9853-78889999874885238997588


No 92 
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=94.98  E-value=0.31  Score=27.79  Aligned_cols=95  Identities=18%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-----------CHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             39999669424899999999999864899729999996677987-----------8468999999999871898899997
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-----------TAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-----------~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      +|+||+.|...|..++..+.++....   +.+++++||.-.-..           ++.+..+.....+...|++......
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~---~~~l~~v~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRL---GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVL   77 (130)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99999898989999999999999872---997999999728865530144678999999999999985427983899999


Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             504787780378885455554320012344201234566656
Q gi|254780546|r   90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        90 ~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                      .+..             ...+.+.+.+.+++.++.|.|....
T Consensus        78 ~~~~-------------~~~i~~~a~~~~~dliV~G~~~~~~  106 (130)
T cd00293          78 EGDP-------------AEAILEAAEELGADLIVMGSRGRSG  106 (130)
T ss_pred             ECCH-------------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             4661-------------8999887776118899994799975


No 93 
>PRK10490 sensor protein KdpD; Provisional
Probab=94.45  E-value=0.41  Score=26.90  Aligned_cols=94  Identities=14%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC----CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             99839999669424899999999999864899729999996677----98784689999999998718988999975047
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg----lr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      ..++|+|++||++.|-.|..-.+.+..+..   ...+|+||+..    +..+.........+++++||-...++.-+.. 
T Consensus       249 ~~e~ilv~~~~~~~~~~lir~~~r~a~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~LAe~LGa~v~~l~G~dv-  324 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAARLG---SVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAE-  324 (895)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCH-
T ss_conf             676299998899874699999999998479---9869999964444579877899999999999981998999837988-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             87780378885455554320012344201234566
Q gi|254780546|r   94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTF  128 (423)
Q Consensus        94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~  128 (423)
                       .            ..+.+.++..++..++.|...
T Consensus       325 -a------------~~il~~Ar~~nvT~IVlGrs~  346 (895)
T PRK10490        325 -E------------KAVVRYAREHNLGKIIIGRPA  346 (895)
T ss_pred             -H------------HHHHHHHHHCCCCEEEECCCC
T ss_conf             -9------------999999998399989988878


No 94 
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=93.23  E-value=0.32  Score=27.71  Aligned_cols=67  Identities=18%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH----HHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             3999966942489999999999986489972999999667798784----6899999999987189889999750478
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKP   94 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s----~~e~~~v~~~~~~lgi~~~~~~~~~~~~   94 (423)
                      |++|=+|||+||+--||-+.+    .+..-.-|+-+.=|   .++|    ---.+...=.++.+|||+.-+...+.+.
T Consensus         2 kvAvLySGGKDS~~ALy~al~----eG~eV~~LV~v~se---N~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeE   72 (227)
T TIGR00289         2 KVAVLYSGGKDSILALYKALE----EGFEVKYLVGVISE---NEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEE   72 (227)
T ss_pred             EEEEEECCCHHHHHHHHHHHH----CCCCEEEEEEEECC---CCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf             068985187136899999986----28854785100028---898620534257899999976176625630278652


No 95 
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine  kinases. The Serine Threonine  kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain  is predicted to be involved in ATP binding.
Probab=93.19  E-value=0.68  Score=25.36  Aligned_cols=95  Identities=18%  Similarity=0.136  Sum_probs=58.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC--------------------CCHHHHHHHHHHHHHHC
Q ss_conf             3999966942489999999999986489972999999667798--------------------78468999999999871
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--------------------ETAKDEVRYVSDVCSRL   80 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr--------------------~~s~~e~~~v~~~~~~l   80 (423)
                      .|+|||.|..-|...|..+.+-...   .+-.++.+||.--..                    .+..+-.....++|++.
T Consensus         1 tV~VAVd~s~~S~~AL~WAl~n~~~---~~~~lvLlHV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~C~~~   77 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLAT---KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRK   77 (146)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9899978988799999999986406---6981999997168876777653066788998888899999999999999875


Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             89889999750478778037888545555432001234420123456665
Q gi|254780546|r   81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        81 gi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      ||...++-.+...+...            +.+.....+++.+.+|-+.+-
T Consensus        78 ~V~~e~~v~e~~d~~~~------------I~e~v~~~~i~~LVmGs~~~~  115 (146)
T cd01989          78 GVQCEDVVLEDDDVAKA------------IVEYVADHGITKLVMGASSDN  115 (146)
T ss_pred             CCEEEEEEEECCCHHHH------------HHHHHHHCCCCEEEECCCCCC
T ss_conf             97289999834888899------------999999759989998627998


No 96 
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.99  E-value=0.51  Score=26.24  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=14.9

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             28999998998189320266786422
Q gi|254780546|r  173 RREDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       173 ~r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      ...+++..+..+|+||..=|.|.+.+
T Consensus       126 NH~dL~~lae~~~IPF~~iPv~~~~K  151 (287)
T PRK13011        126 NHPDLEPLAAWHGIPFHHFPITPDTK  151 (287)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             98678999997699828837887763


No 97 
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.66  E-value=0.8  Score=24.86  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=18.4

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             28999998998189320266786422
Q gi|254780546|r  173 RREDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       173 ~r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      ...+++..+..+|+||..=|.|.+.+
T Consensus       129 NH~dL~~lae~~gIPF~hipv~~~~k  154 (289)
T PRK13010        129 NHPDLQPLAVQHDIPFHHLPVTPDTK  154 (289)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf             87778999997799839826877752


No 98 
>PRK09982 universal stress protein UspD; Provisional
Probab=92.30  E-value=0.88  Score=24.55  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC---C-----C-------HHHH-HHHHHHHHHHCCCC
Q ss_conf             83999966942489999999999986489972999999667798---7-----8-------4689-99999999871898
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---E-----T-------AKDE-VRYVSDVCSRLRIA   83 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr---~-----~-------s~~e-~~~v~~~~~~lgi~   83 (423)
                      .+|+|||..-.||-.|+.=+..+++..   +.++.-+|||....   +     +       ..+| ..+.++++...+.|
T Consensus         4 kHILVAVdLs~eS~~Li~KAv~lAk~~---~AklSlIhvd~~~~elY~gl~~~~~~~~~~~~~e~~~~~L~~L~~~~~YP   80 (142)
T PRK09982          4 KHIGVAISGNEEDALLVNKALELARHN---DAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP   80 (142)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             179999855841699999999998760---98399999908846651102053125688999999999999999847998


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             899997504787780378885455554320012344201234566656689999862
Q gi|254780546|r   84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ  140 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~  140 (423)
                      -+-.-+-    .+.+.+        .+...+++.+++.+..|||+|     |+-++.
T Consensus        81 I~~~~v~----~Gdl~~--------~L~~~v~~~~iDLlIcGHHh~-----fwskl~  120 (142)
T PRK09982         81 KTKLRIE----RGEMPE--------TLLEIMQKEQCDLLVCGHHHS-----FINRLM  120 (142)
T ss_pred             CEEEEEE----ECCHHH--------HHHHHHHHHCCCEEEECCCHH-----HHHHHH
T ss_conf             2478998----448899--------999999984998899656286-----999998


No 99 
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.06  E-value=1.2  Score=23.65  Aligned_cols=94  Identities=19%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             9839999669424899999999999864899729999996677987----846899999999987189889999750478
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP   94 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~----~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~   94 (423)
                      .++|+|++||+..|-.|.--+..+..+-   ....+|+|||-.=..    ++..-.+.+.++|+++|-+..++.-+... 
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~---~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~-  323 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRL---HAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVA-  323 (890)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHH-
T ss_conf             5618999789986389999999999972---897699998256644443779999999999999838869998377389-


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             77803788854555543200123442012345666
Q gi|254780546|r   95 QTGLMAAAREARYALISEHAKTINATLIMTAHTFD  129 (423)
Q Consensus        95 ~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d  129 (423)
                          +         .+.+.|+......++.|.+..
T Consensus       324 ----~---------~i~~ya~~~~~TkiViG~~~~  345 (890)
T COG2205         324 ----K---------AIARYAREHNATKIVIGRSRR  345 (890)
T ss_pred             ----H---------HHHHHHHHCCCEEEEECCCCC
T ss_conf             ----9---------999999972981599568743


No 100
>PRK10116 universal stress protein UspC; Provisional
Probab=90.69  E-value=1.3  Score=23.42  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC--CC------------HHHH-HHHHHHHHHHCCCCE
Q ss_conf             83999966942489999999999986489972999999667798--78------------4689-999999998718988
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ET------------AKDE-VRYVSDVCSRLRIAH   84 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr--~~------------s~~e-~~~v~~~~~~lgi~~   84 (423)
                      .+|+||+-|-.+|-.++.=+..+++...   -+|..+||+.-..  .+            ..++ .++++++....|+|-
T Consensus         4 khILVAvDlS~~S~~~i~kA~~lA~~~~---AklslihV~~~~~~y~~~~~~~~~d~~~~~~e~a~~~L~~l~~~~~~pi   80 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIARPVN---GKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDELIQKADYPI   80 (142)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCC---CEEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6899994188506999999999999819---9899999935766652102213788999999999999999998749981


Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             9999750478778037888545555432001234420123456665
Q gi|254780546|r   85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      ....+....+.            ..+.+.+++.+++.+..|||-.+
T Consensus        81 ~~~~v~~G~~~------------~~I~~~a~e~~~DLIV~G~Hg~~  114 (142)
T PRK10116         81 EKTFIAYGELS------------EHILEVCRKHHFDLVICGNHNHS  114 (142)
T ss_pred             EEEEEEECCHH------------HHHHHHHHHHCCCEEEEECCCCH
T ss_conf             58999965889------------99999999969999999059854


No 101
>TIGR00434 cysH phosophoadenylyl-sulfate reductase; InterPro: IPR004511 Phosphoadenosine phosphosulphate reductase (1.8.4.8 from EC), involved in the assimilation of inorganic sulphate, is designated cysH in bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulphate reductase and PAPS reductase. In a reaction requiring reduced thioredoxin and NADPH, it converts 3'-phosphoadenylylsulphate (PAPS) to sulphite and adenosine 3',5' diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cut-off, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5'-adenylylsulphate (APS) over PAPS.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019379 sulfate assimilation phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin).
Probab=90.54  E-value=1.3  Score=23.33  Aligned_cols=144  Identities=18%  Similarity=0.248  Sum_probs=83.2

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC---CCCCCCHHHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf             27998399996694248999999999998648997299999966---7798784689999999998718----9889999
Q gi|254780546|r   16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDVCSRLR----IAHSVVS   88 (423)
Q Consensus        16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vd---Hglr~~s~~e~~~v~~~~~~lg----i~~~~~~   88 (423)
                      -.-|..++.|.|=|..-+|+|||+..+.+       ++.++-+|   -|+...-+.+  +..++-+++-    ...++.+
T Consensus        10 ~~fp~~LV~~~SFGi~g~V~ldL~~ki~~-------~~~~i~lDfiDTG~hF~eTY~--~~~~~~~ry~qPkglni~vy~   80 (226)
T TIGR00434        10 DTFPDELVYSTSFGIEGAVLLDLVSKIKK-------DIPVIFLDFIDTGYHFPETYE--LIDEVKERYPQPKGLNIKVYK   80 (226)
T ss_pred             HHCCCCCEEHHHHHHHHHHHHHHHHHHCC-------CCCEEEECCHHHCCCCHHHHH--HHHHHHHHHCCCCCCEEEEEC
T ss_conf             63586102022678999999999885178-------851465300011267277899--999998761688775067767


Q ss_pred             EECCCCCCCCHHHHHHHHHH-HH---------------------HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             75047877803788854555-54---------------------320012344201234566656689999862365444
Q gi|254780546|r   89 WKNSKPQTGLMAAAREARYA-LI---------------------SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK  146 (423)
Q Consensus        89 ~~~~~~~~~~~~~ar~~r~~-~~---------------------~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~  146 (423)
                           +.+.+..+.-.++|. .|                     .++.++..+.+.++|-=.| |               
T Consensus        81 -----p~GClS~a~~~~~YGd~LWe~~dVE~~n~y~~lrKVEP~~rALkel~~~AW~~GLRRd-Q---------------  139 (226)
T TIGR00434        81 -----PDGCLSLAEQAAKYGDKLWEQEDVEDPNKYDYLRKVEPLKRALKELEASAWLTGLRRD-Q---------------  139 (226)
T ss_pred             -----CCCCCCHHHHHHHHCCHHHCCCCCCCHHHHCHHHCCHHHHHHCCCCCEEEEEEECCCC-C---------------
T ss_conf             -----8888797899977163001145778701211000102788750237056323203314-3---------------


Q ss_pred             CCCCCCCCCCCC-CCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             332235764100-3579687101210428999998998189320
Q gi|254780546|r  147 GMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       147 g~~l~~~~~~~~-~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      |..-+.+..+-. ...++.=+=||++++=++|-.|...++++|-
T Consensus       140 ~~~R~nl~~~~~d~kf~~~Kv~PlI~Wt~~~v~~Y~~~h~LpYn  183 (226)
T TIGR00434       140 GPSRANLKIVNIDEKFGILKVLPLIDWTWKDVYQYLDAHNLPYN  183 (226)
T ss_pred             CCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             54321375244362458035404214876899999875579887


No 102
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.07  E-value=1.7  Score=22.55  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899999899818932026678642
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~  197 (423)
                      ..+++..+..+|+||..=|.|.++
T Consensus       125 H~dL~~lae~~~IPF~~iPv~~~~  148 (285)
T PRK06027        125 HPDLRSLVESFGIPFHHVPVTKET  148 (285)
T ss_pred             CHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             578999999869982882687665


No 103
>pfam10288 DUF2392 Protein of unknown function (DUF2392). This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif.
Probab=88.31  E-value=0.85  Score=24.68  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=30.0

Q ss_pred             CCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             57968710121042899999899818932026678
Q gi|254780546|r  160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN  194 (423)
Q Consensus       160 ~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN  194 (423)
                      .+++.++|||=++.++||..||+..++.-+.-+++
T Consensus        28 ~~~i~~~~PLRD~l~~Ei~~Y~~~~~l~~~~~~~~   62 (104)
T pfam10288        28 GNDIKILRPLRDLLLKEIEAYCSLKNLPPLLINSL   62 (104)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHCCCHHCCCCC
T ss_conf             88834773758856999999999808740013555


No 104
>pfam02677 DUF208 Uncharacterized BCR, COG1636.
Probab=87.50  E-value=2.1  Score=21.88  Aligned_cols=60  Identities=10%  Similarity=0.026  Sum_probs=45.0

Q ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCEEEEEEE
Q ss_conf             9966942489999999999986489972999999667798784689--999999998718988999975
Q gi|254780546|r   24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        24 vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e--~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      +=+==|+||+.-+..|.+.       ++++.+.--|+++.|.+..+  .+.++++|+++||+...-.++
T Consensus         3 LH~CCaPCs~~~l~~L~~~-------g~~vt~~FyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Yd   64 (176)
T pfam02677         3 LHICCAPCSSYPLEYLREY-------GFEVTGFFYNPNIHPYSEYLRRLEEVKRFAEKLGIPLIEGDYD   64 (176)
T ss_pred             EEECCCCCCHHHHHHHHHC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             2501878607999999984-------9836998779999978999999999999999859937956888


No 105
>LOAD_USPA consensus
Probab=84.54  E-value=2.9  Score=20.88  Aligned_cols=94  Identities=21%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC--------------HHHHHHHHHHHHHHCCCCEE
Q ss_conf             8399996694248999999999998648997299999966779878--------------46899999999987189889
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------------AKDEVRYVSDVCSRLRIAHS   85 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~--------------s~~e~~~v~~~~~~lgi~~~   85 (423)
                      .+|+|++-|..+|...+..+.++....   +.+++++||.-.-...              +.+..+...+.+...+++..
T Consensus         1 k~Ilv~vd~s~~s~~a~~~A~~la~~~---~a~l~~lhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (135)
T LOAD_USPA         1 KKILVAIDGSPESEKALRWAVDLAKRR---GAELILLHVIPPSVSTAASPALDLALLLEEALKLLEEALELLEEAGVKID   77 (135)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             989999869989999999999999874---99899999962776444444201468999999999999999986399739


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             99975047877803788854555543200123442012345666
Q gi|254780546|r   86 VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD  129 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d  129 (423)
                      +.-..+ .+.            ..+.+.+.+.+++.++.|+|..
T Consensus        78 ~~i~~g-~~~------------~~I~~~~~~~~~dliVmG~~~~  108 (135)
T LOAD_USPA        78 VEVEEG-SPA------------EAILELAEESNADLIVVGSRGR  108 (135)
T ss_pred             EEEEEE-CCH------------HHHHHHHHHCCCCEEEEECCCC
T ss_conf             999996-428------------9999998605776799946899


No 106
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells.  These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=84.42  E-value=2.9  Score=20.84  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC---CCC--------CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             3999966942489999999999986489972999999667---798--------78468999999999871898899997
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLR--------ETAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH---glr--------~~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      ||+|++.|-.-|..++..+..+.+..   +-+++++||=-   ...        ..+.+..+.....++..|++......
T Consensus         1 rILVpvd~s~~s~~al~~A~~la~~~---~a~l~~lhVv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   77 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQ---NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIR   77 (132)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHC---CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98997289889999999999999876---998999999845876785566789999999999999999876995699999


Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             50478778037888545555432001234420123456665
Q gi|254780546|r   90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        90 ~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      ....+..            ...+.+++.+++.+..|.|--.
T Consensus        78 ~~~~~~~------------~I~~~a~e~~~DlIVmG~~g~~  106 (132)
T cd01988          78 IDHDIAS------------GILRTAKERQADLIIMGWHGST  106 (132)
T ss_pred             ECCCHHH------------HHHHHHHHHCCCEEEECCCCCC
T ss_conf             7799799------------9999999849999998379998


No 107
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=83.57  E-value=3.2  Score=20.60  Aligned_cols=77  Identities=9%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCCHHHH-HHHH-HHHHHHCCCCE
Q ss_conf             9999985279983999966942489999999999986489972999999667--798784689-9999-99998718988
Q gi|254780546|r    9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDE-VRYV-SDVCSRLRIAH   84 (423)
Q Consensus         9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH--glr~~s~~e-~~~v-~~~~~~lgi~~   84 (423)
                      .......+....++.||+|||.--..+...|.+........--+++.+.+|-  ++.+++.+- ..++ +.+...++|+.
T Consensus         8 a~~i~~~i~~~~~~~ialsGG~tP~~~y~~L~~~~~~~~i~w~~v~~f~~DE~~~v~~~~~~Sn~~~~~~~ll~~~~i~~   87 (232)
T cd01399           8 AELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIKP   87 (232)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf             99999999977986999899878999999999988634997579389927423478950558899999998642579998


Q ss_pred             E
Q ss_conf             9
Q gi|254780546|r   85 S   85 (423)
Q Consensus        85 ~   85 (423)
                      .
T Consensus        88 ~   88 (232)
T cd01399          88 E   88 (232)
T ss_pred             H
T ss_conf             9


No 108
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810    An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,.  10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate     Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=80.85  E-value=4  Score=19.93  Aligned_cols=88  Identities=11%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
Q ss_conf             83999966942489999999999986489972999999667798784689999999998718988999975047877803
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM   99 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~   99 (423)
                      .||++=||  +.+-||+-||.+|.  .+.+..+|.+|.=||-          ..++..+++||||+.+..+.+.     .
T Consensus        93 krvai~vs--Ke~HCL~DLL~r~~--~GeL~~ei~~VIsNH~----------~lr~lve~F~iPF~~~p~~~~~-----r  153 (294)
T TIGR00655        93 KRVAILVS--KEDHCLGDLLWRWY--SGELDAEIALVISNHE----------DLRELVERFGIPFHYIPATKDT-----R  153 (294)
T ss_pred             CEEEEEEE--CCHHHHHHHHHHHC--CCCCEEEEEEEECCCH----------HHHHHHHHCCCCEEEECCCCCH-----H
T ss_conf             76899840--41203589999873--8982379999864987----------8998866538988986378850-----5


Q ss_pred             HHHHHHHHHHHHH--HCCCCCCCCHHHHH
Q ss_conf             7888545555432--00123442012345
Q gi|254780546|r  100 AAAREARYALISE--HAKTINATLIMTAH  126 (423)
Q Consensus       100 ~~ar~~r~~~~~~--~~~~~~~~~l~~ah  126 (423)
                      ..+......++.+  ...+...+++++|-
T Consensus       154 ~e~Ek~~Lell~~yelkh~~~~DlvVLAk  182 (294)
T TIGR00655       154 LEHEKKELELLKQYELKHKYQVDLVVLAK  182 (294)
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCEEEEEH
T ss_conf             68999999987403321102754698210


No 109
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=80.30  E-value=4.1  Score=19.80  Aligned_cols=68  Identities=21%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             39999669424899999999999864899729999996677-----------9878468999999999871898899997
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----------LRETAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-----------lr~~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      ||++-+|||.-|.-|+..+.+..+.++. ++++.|....--           |-|+-..--+..++.|.++|||..+.+-
T Consensus         2 kVLl~Ca~GmSSs~la~~m~k~A~~~gi-~~~i~A~~~~~~~d~~~~yDvilLaPQv~~~~~~lk~~ad~~Gi~v~~i~~   80 (99)
T cd05565           2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG   80 (99)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf             0999907988589999999999998199-769995103448988707999999850888899999999983991887083


No 110
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=79.96  E-value=4.2  Score=19.73  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999899818932026678642
Q gi|254780546|r  175 EDIRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       175 ~~l~~~~~~~~i~wveDpSN~d~  197 (423)
                      .+++..+..+||||..=|-|.+.
T Consensus       128 ~dl~~~v~~~~IPfhhip~~~~~  150 (287)
T COG0788         128 DDLRPLVERFDIPFHHIPVTKEN  150 (287)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCC
T ss_conf             78899999749986654678775


No 111
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=74.44  E-value=6  Score=18.68  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC---C----------CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             839999669424899999999999864899729999996677---9----------878468999999999871898899
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L----------RETAKDEVRYVSDVCSRLRIAHSV   86 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg---l----------r~~s~~e~~~v~~~~~~lgi~~~~   86 (423)
                      .||++.||||.-|+-|..-+.+....++ ...++.|+.+.-+   +          .|+-..-....++.+.+.|+|..+
T Consensus         2 kKILLvCaaGMSTSmlv~km~~~A~~~G-~dveI~Av~~~e~~~~i~~~~yDv~LlgPQVr~~~~~~k~~a~~~giPv~v   80 (104)
T PRK09590          2 AKALIICAAGMSSSLMAKKTTEFLKGKG-KDIEVDAISATEGGKAIAAAAFDLYLVSPQTKMYFKQFEEAGSKAGKPVVQ   80 (104)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             5599996899879999999999999769-836999848889887632268878998876887899999999872997788


Q ss_pred             EEEECCCCC
Q ss_conf             997504787
Q gi|254780546|r   87 VSWKNSKPQ   95 (423)
Q Consensus        87 ~~~~~~~~~   95 (423)
                      +.-..-.|-
T Consensus        81 I~~~~Y~Pl   89 (104)
T PRK09590         81 IPPQAYIPI   89 (104)
T ss_pred             ECCCCCCCC
T ss_conf             787464577


No 112
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210   This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=73.76  E-value=6.2  Score=18.57  Aligned_cols=75  Identities=11%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             EEEEEEECCCCCCCHHH--HHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             99999966779878468--9999999998718988999975047877803788854555543200123442012345666
Q gi|254780546|r   52 KFSAISVDHCLRETAKD--EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD  129 (423)
Q Consensus        52 ~l~a~~vdHglr~~s~~--e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d  129 (423)
                      .=+-+|||=|--.|.++  ++..+.+.|.+||||+----+.   +++.+++.--..-.+..++...|.|++.+-|.-+=|
T Consensus       105 DAVS~HvNvGs~~e~d~~~~lg~vA~~ad~~GvPlLAMmYa---RG~~i~~e~d~~~v~HAaRlg~ElGADvvK~~Y~Gd  181 (259)
T TIGR01949       105 DAVSIHVNVGSDTEADQIEDLGDVAEIADDWGVPLLAMMYA---RGPRIDDEVDPEVVAHAARLGEELGADVVKVPYTGD  181 (259)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHECCCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             86799886489873899999989999886548842011278---868876644767888887653534577665143177


No 113
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=72.97  E-value=6.4  Score=18.44  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             39999669424899999999999864899729999996677-----------9878468999999999871898899997
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----------LRETAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-----------lr~~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      ||++.+|||.-|.-|+.-+++.....+. ++++.|+...--           |-|.-......+++.+...|+|..++.-
T Consensus         1 kIlL~C~~GmSts~l~~km~~~a~~~~~-~~~i~A~~~~~~~~~~~~~DviLl~PQv~y~~~~i~~~~~~~~ipV~vI~~   79 (96)
T cd05564           1 KILLVCSAGMSTSILVKKMKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDM   79 (96)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEEHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEECH
T ss_conf             9899959986599999999999997499-779999648999977415999997727999999999986104992796073


Q ss_pred             E
Q ss_conf             5
Q gi|254780546|r   90 K   90 (423)
Q Consensus        90 ~   90 (423)
                      .
T Consensus        80 ~   80 (96)
T cd05564          80 M   80 (96)
T ss_pred             H
T ss_conf             5


No 114
>KOG0189 consensus
Probab=72.74  E-value=6.5  Score=18.41  Aligned_cols=159  Identities=15%  Similarity=0.155  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC-
Q ss_conf             6989999999985279983999966942489999999999986489972999999667798784689999999998718-
Q gi|254780546|r    3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-   81 (423)
Q Consensus         3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg-   81 (423)
                      +||.|.+...+-.+  |.-+.+|.||-.| ++|..+++..    +. +  ..++.+|.+-.-  .+-.....++-+++| 
T Consensus        32 ~sP~eIm~~al~tf--~~~~q~a~~G~~~-lvlid~~~~~----~~-~--~~l~~idT~~~~--PeT~~l~d~VekkY~~   99 (261)
T KOG0189          32 LSPQEIMDWALETF--PNLFQTAASGLEG-LVLIDMLSKT----GR-P--FRLFFIDTLHHF--PETLRLFDAVEKKYGN   99 (261)
T ss_pred             CCHHHHHHHHHHHH--HHHHHHHHCCCCC-HHHHHHHHHC----CC-C--CEEEEEECCCCC--HHHHHHHHHHHHHCCC
T ss_conf             79899999999972--1489998646450-3799999873----99-9--616995334448--5887899999875486


Q ss_pred             CCEEEEEEECCC-------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             988999975047-------------8778037888545555432001234420123456665668999986236544433
Q gi|254780546|r   82 IAHSVVSWKNSK-------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM  148 (423)
Q Consensus        82 i~~~~~~~~~~~-------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~  148 (423)
                      |+.++..-+...             -..+-++-.|-+..+-+..+.+......+.||.-.+.           | |-.+ 
T Consensus       100 i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ-----------~-gtRs-  166 (261)
T KOG0189         100 IRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQ-----------G-GTRS-  166 (261)
T ss_pred             EEEEEECCHHHHHHHHHHHCCCHHHEECCCHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCC-----------C-CCCC-
T ss_conf             57899756067788999860353430067466523332357788861456026895120267-----------8-8656-


Q ss_pred             CCCCCCCC-CCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             22357641-003579687101210428999998998189320
Q gi|254780546|r  149 GLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       149 ~l~~~~~~-~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                         .++-+ .....++--|-||.+++-.++-.|+..+++|+-
T Consensus       167 ---elpiVqvD~~fellK~NPlaN~~~~dV~nyi~t~nVP~N  205 (261)
T KOG0189         167 ---ELPIVQVDPVFELLKINPLANWEFNDVWNYIRTNNVPYN  205 (261)
T ss_pred             ---CCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             ---663487437333345335344318899999986388679


No 115
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.40  E-value=7  Score=18.20  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=52.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCEEEEEE
Q ss_conf             9983999966942489999999999986489972999999667798784689--99999999871898899997
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e--~~~v~~~~~~lgi~~~~~~~   89 (423)
                      +..+|+|-+-=.+||+-.+..+.+.       +.++....-|.+++|.+..+  ...+.++|+++||++.--.+
T Consensus         2 ~~~kiLlH~CCAPcs~y~le~l~~~-------~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY   68 (204)
T COG1636           2 GRPKLLLHSCCAPCSGYVLEKLRDS-------GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDY   68 (204)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             9870789862577718999999965-------866699974899892699999999999999982970553575


No 116
>PRK06696 uridine kinase; Validated
Probab=70.56  E-value=7.3  Score=18.08  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
Q ss_conf             999999998527998399996694--2489999999999986489972999999667798784
Q gi|254780546|r    6 IESVRFFVRSLVYPAHILVAVSGG--SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA   66 (423)
Q Consensus         6 ~~~~~~~~~~l~~~~~i~vAvSGG--~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s   66 (423)
                      .+.+...+.++....+++||++|+  +-=+.|+..+.+.....+.   .+..+|+|-=+++.+
T Consensus        11 ~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~---~V~~v~~Ddf~~~~~   70 (227)
T PRK06696         11 VKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGR---PVIRASIDDFHNPKV   70 (227)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCCCHH
T ss_conf             999999998359998689997789987879999999999974699---489971544347377


No 117
>PRK10717 cysteine synthase A; Provisional
Probab=68.68  E-value=7.6  Score=17.95  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             279983999966942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r   16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      ..+|...+|.-|.|-=..+|+++++.+       ++++++ .+..+.    ..   .-.+.++.+|-+....
T Consensus        60 ~l~~g~~vveaSSGN~g~alA~~a~~~-------G~~~~i-v~p~~~----~~---~k~~~i~~~GAeVi~v  116 (334)
T PRK10717         60 LLKPGGTIVEGTAGNTGIGLALVAAAR-------GYKTVI-VMPETQ----SQ---EKKDLLRALGAELVEV  116 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHC-------CCCEEE-EECCCC----HH---HHHHHHHHCCCEEEEC
T ss_conf             988998899827973899999999980-------996599-956854----59---9999999759839976


No 118
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=68.59  E-value=7.9  Score=17.80  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf             899999999852799839999669424899999999999864899729999996677987
Q gi|254780546|r    5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE   64 (423)
Q Consensus         5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~   64 (423)
                      |...+...+..+.+..+|+|-+..|.-|......|.+    .   +++  +.+++.|+..
T Consensus        37 P~~~l~~~~~~l~k~~~ivv~C~~G~rS~~aa~~L~~----~---G~~--v~~l~GG~~~   87 (90)
T cd01524          37 PLDELRDRLNELPKDKEIIVYCAVGLRGYIAARILTQ----N---GFK--VKNLDGGYKT   87 (90)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH----C---CCC--EEEECCCHHH
T ss_conf             5077999999861587099988998059999999998----6---998--8996698887


No 119
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=65.48  E-value=8.7  Score=17.51  Aligned_cols=18  Identities=6%  Similarity=0.102  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHCCCCCC
Q ss_conf             289999989981893202
Q gi|254780546|r  173 RREDIRSFLLQRNISWCE  190 (423)
Q Consensus       173 ~r~~l~~~~~~~~i~wve  190 (423)
                      .=.+|-..|+++++|.+-
T Consensus       173 ~v~~IAklC~~~~IpHvV  190 (389)
T pfam05889       173 NVKEIAKICAEYDVPHLV  190 (389)
T ss_pred             CHHHHHHHHHHCCCCEEE
T ss_conf             799999999974997478


No 120
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=65.45  E-value=9.1  Score=17.38  Aligned_cols=90  Identities=12%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCHHH-HHHH-HHHHHHHCCCCEEEEEE-ECCC
Q ss_conf             9839999669424899999999999864899729999996677--9878468-9999-99999871898899997-5047
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKD-EVRY-VSDVCSRLRIAHSVVSW-KNSK   93 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg--lr~~s~~-e~~~-v~~~~~~lgi~~~~~~~-~~~~   93 (423)
                      +..+.+|+|||.-=..+...|.+........--+++++++|--  +.++..+ -..+ -+.+...++||..-+.. ++  
T Consensus        32 ~~~~~l~la~G~tp~~~y~~L~~~~~~~~i~w~~v~~f~~DEy~gvp~~~~~S~~~~l~~~ll~~l~i~~~ni~~~~g--  109 (264)
T PRK00443         32 DRPFVLGLATGSTPLGTYKALIELHKAGKIDFSRVTTFNLDEYVGLPKDHPESYRSFMHENFFDHVDIPPENINILNG--  109 (264)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCC--
T ss_conf             897399968988989999999999861699856859992301268997760779999999988636986987104888--


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             8778037888545555432
Q gi|254780546|r   94 PQTGLMAAAREARYALISE  112 (423)
Q Consensus        94 ~~~~~~~~ar~~r~~~~~~  112 (423)
                      ...+.+++|  .+|.....
T Consensus       110 ~~~d~~~~~--~~ye~~i~  126 (264)
T PRK00443        110 NADDIEAEC--RRYEEKIK  126 (264)
T ss_pred             CCCCHHHHH--HHHHHHHH
T ss_conf             878999999--99999998


No 121
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent; InterPro: IPR004508 This enzyme, involved in the assimilation of inorganic sulphate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulphate (APS) over 3'-phosphoadenylylsulphate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement Escherichia coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.; GO: 0016671 oxidoreductase activity acting on sulfur group of donors disulfide as acceptor, 0019421 sulfate reduction APS pathway.
Probab=62.03  E-value=10  Score=16.95  Aligned_cols=161  Identities=17%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf             69899999999852799839999669424899999999999864899729999996677-98784689999999998718
Q gi|254780546|r    3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus         3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-lr~~s~~e~~~v~~~~~~lg   81 (423)
                      .||.|.+.+.+..+  +..|+||+||--|- +|.-.++    -.+. +  +.++.+|.| |.|+.   -.+...+-+.+|
T Consensus       104 asPleimdk~l~k~--G~~iaiafsGaedv-alieya~----ltG~-P--frvfsldtGrlnPet---y~~fd~vek~yG  170 (469)
T TIGR00424       104 ASPLEIMDKALEKF--GNDIAIAFSGAEDV-ALIEYAH----LTGR-P--FRVFSLDTGRLNPET---YRLFDAVEKQYG  170 (469)
T ss_pred             CCCHHHHHHHHHHC--CCCEEEEECCCCHH-HHHHHHH----HCCC-C--EEEEEECCCCCCHHH---HHHHHHHHHHCC
T ss_conf             58457889999840--65057664163113-5554565----4487-2--279863056557246---677665643226


Q ss_pred             CCEEEEEEECCC-------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             988999975047-------------8778037888545555432001234420123456665668999986236544433
Q gi|254780546|r   82 IAHSVVSWKNSK-------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM  148 (423)
Q Consensus        82 i~~~~~~~~~~~-------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~  148 (423)
                      |.....--|...             -..+-|+-+|....+-+....+  |.....||.-.|.---|         ... .
T Consensus       171 i~ieymfPd~vevq~lvr~kGlfsfyedGhqeCCrvrkvrPlrralk--Gl~aWitGqrkdqsPGt---------rse-i  238 (469)
T TIGR00424       171 IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLKAWITGQRKDQSPGT---------RSE-I  238 (469)
T ss_pred             EEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCCHHHHHHH--HHHHHHCCCCCCCCCCC---------CCC-C
T ss_conf             17897558603334455405621331156511001102324788865--53433124432478886---------233-4


Q ss_pred             CCCCCCCCCC----CCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf             2235764100----357968710121042899999899818932
Q gi|254780546|r  149 GLSGMCDTIL----YDLNLWISRPFLRCRREDIRSFLLQRNISW  188 (423)
Q Consensus       149 ~l~~~~~~~~----~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w  188 (423)
                      -.....|+.-    -.+.+.-|-|+-++.-.++-.|++...+|.
T Consensus       239 P~vqvdPvfeGldGGvGslvkWnP~anveG~d~Wnflr~mdvPv  282 (469)
T TIGR00424       239 PVVQVDPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPV  282 (469)
T ss_pred             CEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCH
T ss_conf             34763442004567600202204433455147998887622412


No 122
>KOG3425 consensus
Probab=60.79  E-value=11  Score=16.81  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEECCCHH----------HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
Q ss_conf             769899999999852799839999669424----------8999999999998648997299999966779878468999
Q gi|254780546|r    2 FLSPIESVRFFVRSLVYPAHILVAVSGGSD----------SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR   71 (423)
Q Consensus         2 ~~~p~~~~~~~~~~l~~~~~i~vAvSGG~D----------S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~   71 (423)
                      ..+-.+.....++...++++|.|.++|++|          -.+..-...+-.+.   .+.+++.+||+-|-|+.   |-.
T Consensus         8 ~~~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~---ap~~~~~v~v~VG~rp~---Wk~   81 (128)
T KOG3425           8 LLPGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH---APEDVHFVHVYVGNRPY---WKD   81 (128)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEEEEECCCCC---CCC
T ss_conf             430589999999987278669999965668888983782187763899999973---87761799997068774---148


Q ss_pred             HHHHHHHHCCC---CEEEEEEE
Q ss_conf             99999987189---88999975
Q gi|254780546|r   72 YVSDVCSRLRI---AHSVVSWK   90 (423)
Q Consensus        72 ~v~~~~~~lgi---~~~~~~~~   90 (423)
                      -...+=.+.++   -.+.++|.
T Consensus        82 p~n~FR~d~~~lt~vPTLlrw~  103 (128)
T KOG3425          82 PANPFRKDPGILTAVPTLLRWK  103 (128)
T ss_pred             CCCCCCCCCCCEEECCEEEEEC
T ss_conf             9985434987414033436873


No 123
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=60.31  E-value=11  Score=16.75  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             HHHHHCCCCCEEEEEECCCHHHHHHHHHHH---HHHHH---CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             999852799839999669424899999999---99986---489972999999667798784689999999998718988
Q gi|254780546|r   11 FFVRSLVYPAHILVAVSGGSDSMGLLIALH---SVLSD---RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH   84 (423)
Q Consensus        11 ~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~---~~~~~---~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~   84 (423)
                      ++.+.+..|..+++-||--.|...+--.+.   ++...   +-+..+.+-.+.|.|- +.+.++-++.|+++++..++|.
T Consensus        21 RHektf~npt~ia~dv~D~m~~~ei~a~~~~i~~v~~~~~~rVG~~l~~D~iav~~~-s~dp~~fa~~vk~V~~~~~~pl   99 (384)
T pfam03599        21 RFELPFPNPTAITIDVFDNLSPELLKARRERIEDVMFDPKKRVGEKLTLDMIAIRLI-STDPKEFAKAVEKVLQAVDVPL   99 (384)
T ss_pred             ECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHHHHHHCCCCE
T ss_conf             466256799826999538877677999999987521322222212202338999907-8999999999999996469988


Q ss_pred             EEEEEECC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99997504---------7877803788854555543200123442012345-66656689999862365444
Q gi|254780546|r   85 SVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAH-TFDDQLETVYMRSQRDYAEK  146 (423)
Q Consensus        85 ~~~~~~~~---------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah-~~dD~~Et~l~rl~r~sg~~  146 (423)
                      .....+..         +....+-..|-...|..+.+.+++.++-.++.+- ..+.+.+..  +.+...|++
T Consensus       100 iL~~~dp~vl~aale~~~~~rPLlyaAt~~N~~~m~~lA~~~~~Pv~v~a~~dl~~l~~L~--~~l~~~Gik  169 (384)
T pfam03599       100 VIGGSDPEVLKAALEVAEDERPLLYAATLDNYKEIAELALEYKHPVLLWSINDLNELKNLN--RKLLKAGVK  169 (384)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH--HHHHHCCCC
T ss_conf             9980899999999997465897785489989999999999749828997488899999999--999976985


No 124
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607   This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of Escherichia coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis thaliana. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. ; GO: 0004644 phosphoribosylglycinamide formyltransferase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=60.06  E-value=11  Score=16.72  Aligned_cols=94  Identities=23%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             EEEEEECC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
Q ss_conf             39999669-42489999999999986489972999999667798784689999999998718988999975047877803
Q gi|254780546|r   21 HILVAVSG-GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM   99 (423)
Q Consensus        21 ~i~vAvSG-G~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~   99 (423)
                      ||+|=.|| |+-==||..++++-   ....+-.+..|..|   +|     ..++.+.|++.+||+.++.-..-..+-..+
T Consensus         2 ~i~VLiSG~GSNLqAiiDA~~~~---~~~~~A~v~lVisn---~p-----~A~g~~RA~~~~iP~~v~~~~~f~sGiake   70 (215)
T TIGR00639         2 RIVVLISGSGSNLQAIIDAIKEG---QGKIDASVVLVISN---KP-----KAYGLERAAQAGIPTKVLSLKDFDSGIAKE   70 (215)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHC---CCCCCCEEEEEEEC---CC-----CCHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf             36899842871799999998521---27867368999865---86-----626677788758946774216788775310


Q ss_pred             -----HHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             -----78885455554320012344201234
Q gi|254780546|r  100 -----AAAREARYALISEHAKTINATLIMTA  125 (423)
Q Consensus       100 -----~~ar~~r~~~~~~~~~~~~~~~l~~a  125 (423)
                           +.||...=..+....+..+.+.+++|
T Consensus        71 Dkaarakar~~~d~~i~~~l~~~~vdlvvlA  101 (215)
T TIGR00639        71 DKAARAKAREAFDQAIAEELKAAEVDLVVLA  101 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             1678888789999999999996099699984


No 125
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113   6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket .    This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=59.72  E-value=6.8  Score=18.28  Aligned_cols=154  Identities=18%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             7698999999998527998399996694--24899999999999864899729999996677987846899999999987
Q gi|254780546|r    2 FLSPIESVRFFVRSLVYPAHILVAVSGG--SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR   79 (423)
Q Consensus         2 ~~~p~~~~~~~~~~l~~~~~i~vAvSGG--~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~   79 (423)
                      .+.|..+|..|+++|.+|+||+|-|-=|  +|.=++-.-|+-++..  +   .   +.||=|-+-..|  ...=.+-.++
T Consensus        47 ~i~g~~~ieeFV~~Le~PRKImLMVkAG~pVdaD~~I~~L~P~LE~--G---D---iIIDGGNS~Y~D--T~RR~~eL~~  116 (480)
T TIGR00873        47 KIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDADAVINSLLPLLEK--G---D---IIIDGGNSHYKD--TERRYKELKA  116 (480)
T ss_pred             CCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC--C---C---EEECCCCCCCCC--HHHHHHHHHH
T ss_conf             5334326799998506887288877538853778999996443589--9---8---887588788466--5789999986


Q ss_pred             CCCCEEEEEEECCC----CCCCCHHHHHHHHHHHHH-------HHCC----CCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             18988999975047----877803788854555543-------2001----23442012345666566899998623654
Q gi|254780546|r   80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALIS-------EHAK----TINATLIMTAHTFDDQLETVYMRSQRDYA  144 (423)
Q Consensus        80 lgi~~~~~~~~~~~----~~~~~~~~ar~~r~~~~~-------~~~~----~~~~~~l~~ah~~dD~~Et~l~rl~r~sg  144 (423)
                      -||-|.=.=+.+-+    .+++++.=-...-|..+.       ....    +-+|.+|-                -.|+|
T Consensus       117 ~Gi~FvG~GvSGGEeGAl~GPSiMPGG~~~Ay~~~~PIl~~IAAkv~dPdg~PCC~wiG----------------~~GAG  180 (480)
T TIGR00873       117 KGILFVGVGVSGGEEGALKGPSIMPGGSAEAYPLVAPILQKIAAKVDDPDGEPCCTWIG----------------PDGAG  180 (480)
T ss_pred             CCCCEEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC----------------CCCCC
T ss_conf             49816730132453021378877888798789999678876554216853294224378----------------67984


Q ss_pred             CCCCCCCCCCCCCCCCCCC-------EEECCHHCCCHHHHHHHHHHHC
Q ss_conf             4433223576410035796-------8710121042899999899818
Q gi|254780546|r  145 EKGMGLSGMCDTILYDLNL-------WISRPFLRCRREDIRSFLLQRN  185 (423)
Q Consensus       145 ~~g~~l~~~~~~~~~~~~~-------~i~RPLL~~~r~~l~~~~~~~~  185 (423)
                      ..    ..|----.+++|+       .+.|-.|+++-++|.+.-.+.|
T Consensus       181 Hy----VKMVHNGIEYGDMQLI~EAY~~lK~~L~L~~~~i~~vF~~WN  224 (480)
T TIGR00873       181 HY----VKMVHNGIEYGDMQLIAEAYDILKEGLGLSNEEIAEVFTEWN  224 (480)
T ss_pred             CE----EEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             30----532576711777989999999998651888889999985523


No 126
>PRK07667 uridine kinase; Provisional
Probab=59.61  E-value=11  Score=16.67  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=22.2

Q ss_pred             CCCCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf             7998399996694248--9999999999986489972999999667
Q gi|254780546|r   17 VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDH   60 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdH   60 (423)
                      .+..+++||++||+=|  +.++.-+++-....   +..+.++|+|-
T Consensus        10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~---~~~v~v~~~Dd   52 (190)
T PRK07667         10 HKENRFILGIDGLSRSGKTTFVANLKENMKQE---GIPFHIFHIDD   52 (190)
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCC
T ss_conf             75986999977989788999999999998665---98379996662


No 127
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=59.61  E-value=11  Score=16.67  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHHHHHCCC----CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             76989999999985279----98399996694248999999999998648997299999966779878468999999999
Q gi|254780546|r    2 FLSPIESVRFFVRSLVY----PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC   77 (423)
Q Consensus         2 ~~~p~~~~~~~~~~l~~----~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~   77 (423)
                      ..+|+-++++.+-+...    +.+|+  |=|--|.+.|+.++.       .++-+|+|+-||.-       =..|..+.+
T Consensus        24 ~~T~ET~v~Ra~l~~~rgdL~Gk~iL--~vGDDDLtSlA~al~-------~~p~~I~VvDIDeR-------ll~fI~~~A   87 (243)
T pfam01861        24 FVTPETTVARVALMYSRGDLEGKEIL--VLGDDDLTSLAAALT-------GLPKRIAVVDIDER-------LIKFIERVA   87 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEE--EECCCCHHHHHHHHC-------CCCCEEEEEECCHH-------HHHHHHHHH
T ss_conf             31628899999999873885798799--972861878999964-------89854899967589-------999999999


Q ss_pred             HHCCCCEEEEEEECCCCCC
Q ss_conf             8718988999975047877
Q gi|254780546|r   78 SRLRIAHSVVSWKNSKPQT   96 (423)
Q Consensus        78 ~~lgi~~~~~~~~~~~~~~   96 (423)
                      +++|++.....+|..++-+
T Consensus        88 ~~~gl~i~~~~~DlR~pLP  106 (243)
T pfam01861        88 KEEGLKIEAFVHDLRNPLP  106 (243)
T ss_pred             HHCCCCEEEEEECCCCCCC
T ss_conf             9749971688741014899


No 128
>KOG1325 consensus
Probab=58.61  E-value=11  Score=16.87  Aligned_cols=30  Identities=23%  Similarity=0.144  Sum_probs=19.1

Q ss_pred             HHHHHHHHHC------C-----CCCEEEEEECCCHH-HHHHH
Q ss_conf             9999999852------7-----99839999669424-89999
Q gi|254780546|r    7 ESVRFFVRSL------V-----YPAHILVAVSGGSD-SMGLL   36 (423)
Q Consensus         7 ~~~~~~~~~l------~-----~~~~i~vAvSGG~D-S~aLl   36 (423)
                      ++.++|+..+      .     ...+|+||+|||.= +|...
T Consensus        24 ~AL~~fL~~~~~~l~~~~~~~~d~P~vaIa~SGGG~RAMl~g   65 (571)
T KOG1325          24 EALKSFLSNTTLNLDSDSLVSSDGPVVGIAGSGGGLRAMLSG   65 (571)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             999999864445556543335789858998348778988632


No 129
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.39  E-value=12  Score=16.53  Aligned_cols=138  Identities=9%  Similarity=0.038  Sum_probs=67.1

Q ss_pred             HHHHHHHHHC-CCCCEEEEEECCC-HH------------------HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
Q ss_conf             9999999852-7998399996694-24------------------89999999999986489972999999667798784
Q gi|254780546|r    7 ESVRFFVRSL-VYPAHILVAVSGG-SD------------------SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA   66 (423)
Q Consensus         7 ~~~~~~~~~l-~~~~~i~vAvSGG-~D------------------S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s   66 (423)
                      |.+...+..- ...+.|+|.+|-| ..                  ...++..++.+......|    +++|.|||-. +.
T Consensus        27 E~~~Ail~AAee~~sPVIiq~S~g~~~y~~g~~~~~~~~~~~v~g~i~~a~~v~~~a~~~~VP----VaLHLDHg~~-~~  101 (345)
T cd00946          27 STINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVP----VVLHTDHCAK-KL  101 (345)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEECCCCCC-CC
T ss_conf             999999999999788999987775887705655432017788877899999999999876998----8997356753-22


Q ss_pred             HHHHH----HHHHHHHHCCCC-EEEEEEECCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCHH------H--H------
Q ss_conf             68999----999999871898-8999975047--877803788854555543200123442012------3--4------
Q gi|254780546|r   67 KDEVR----YVSDVCSRLRIA-HSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIM------T--A------  125 (423)
Q Consensus        67 ~~e~~----~v~~~~~~lgi~-~~~~~~~~~~--~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~------~--a------  125 (423)
                      ..|..    .....+...+.+ |.++=+|...  -..|++...+...|..-....-+.....+.      .  .      
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~gFtSVMiDgS~~p~eeNi~~TkevVe~Ah~~gvsVEaELG~vGG~EDgv~~~~~~~~~~  181 (345)
T cd00946         102 LPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAEL  181 (345)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHC
T ss_conf             10100057877999996488878457765898999999999999999986639814662034577566766555541212


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             566656689999862365444332
Q gi|254780546|r  126 HTFDDQLETVYMRSQRDYAEKGMG  149 (423)
Q Consensus       126 h~~dD~~Et~l~rl~r~sg~~g~~  149 (423)
                      -+.-++++.+.-++...+|++.+.
T Consensus       182 yT~Peea~~f~~~~~~~tgvd~LA  205 (345)
T cd00946         182 YTQPEDVWYVYEALSKISPNFSIA  205 (345)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             799999999999963677760565


No 130
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase; InterPro: IPR011800    Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulphate reductase catalyzes the reduction of 3'-phosphoadenylylsulphate (PAPS) to sulphite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (IPR004508 from INTERPRO) and bacterial (IPR011798 from INTERPRO) enzymes preferring 5'-adenylylsulphate (APS) over PAPS as a substrate for reduction to sulphite.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=57.31  E-value=12  Score=16.41  Aligned_cols=175  Identities=13%  Similarity=0.175  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999998527998-399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r    5 PIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA   83 (423)
Q Consensus         5 p~~~~~~~~~~l~~~~-~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~   83 (423)
                      |.+.|.=.+..|  |. .++..-|=|.|.++.+|++....+.+. +  .+-++-+|-|-..  .+=-.++.++-.++.-|
T Consensus        14 a~~iiAWs~~~~--P~G~Lv~tsaFg~~~lV~~hll~~~~keky-~--~~pvif~DTly~F--~~Tl~l~~~~~~~y~qP   86 (239)
T TIGR02057        14 AQEIIAWSIETF--PTGELVQTSAFGIQALVILHLLSSILKEKY-P--DIPVIFIDTLYLF--PQTLELVDELTEKYKQP   86 (239)
T ss_pred             HHHHHHHHHHHC--CCCCEEECCHHHHHHHHHHHHHHHHHHHHC-C--CCCEEEECCCCCC--HHHHHHHHHHHHHHCCC
T ss_conf             457999998755--999745301020478999999999876217-9--9867862111362--78999999999986276


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCC
Q ss_conf             89999750478778037888545555432001------234420123456665668999986-23654443322357641
Q gi|254780546|r   84 HSVVSWKNSKPQTGLMAAAREARYALISEHAK------TINATLIMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDT  156 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~------~~~~~~l~~ah~~dD~~Et~l~rl-~r~sg~~g~~l~~~~~~  156 (423)
                      - -......+......++.-.++|.-+.....      ...+..+==.|=+=+-.++...-. .|.+  .+..-+.|+..
T Consensus        87 k-n~~L~~~~~~~~~s~a~~~AkYG~~l~~KD~~~~~~Y~~~~KvEP~~RAlkEL~~~Aw~tG~Rr~--Q~~~R~nL~v~  163 (239)
T TIGR02057        87 K-NLDLNLYKYDDVESEAAFEAKYGKLLWQKDVEKLEKYDDIAKVEPMQRALKELNAVAWFTGRRRD--QASARANLPVL  163 (239)
T ss_pred             C-CCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH--HHCCCCCCCCE
T ss_conf             5-56330331688887898974420465405722233213434436233556888899987425543--42022368610


Q ss_pred             CC-CCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             00-3579687101210428999998998189320
Q gi|254780546|r  157 IL-YDLNLWISRPFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       157 ~~-~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      -. ..+|.-=+-||++++++++-+|+.+++++|-
T Consensus       164 ~~D~~~G~lKv~Pl~~W~~~~~~~Y~~~h~v~Y~  197 (239)
T TIGR02057       164 ELDLQNGILKVNPLIDWTRKQVYQYLAAHKVPYN  197 (239)
T ss_pred             EEECCCCCCEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             0001478103202102650227999986788468


No 131
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=56.31  E-value=13  Score=16.30  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             69899999999852799839999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r    3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI   82 (423)
Q Consensus         3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi   82 (423)
                      +++.+.+..|+.++.+|++|++-|-.|..--..+.-+..++.  +      --+.||+|-..  -.+.....+.|++.||
T Consensus        55 i~~~~sl~e~v~sl~~pr~Iilmv~aG~~Vd~vi~~L~~~L~--~------GDIIID~GNs~--~~dt~rr~~~l~~kgI  124 (474)
T PTZ00142         55 VKGYHSLEELVNSLKRPRRVMLLIKAGEAVDEFIDNILPHLE--K------GDIIIDGGNEW--YNNSERRIKLCKEKGI  124 (474)
T ss_pred             CCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCC--C------CCEEEECCCCC--HHHHHHHHHHHHHCCC
T ss_conf             646678999997379999899982698259999999985088--9------99898799888--6579999999985799


Q ss_pred             CEEEEEEEC
Q ss_conf             889999750
Q gi|254780546|r   83 AHSVVSWKN   91 (423)
Q Consensus        83 ~~~~~~~~~   91 (423)
                      .+.-.-+.+
T Consensus       125 ~fld~GVSG  133 (474)
T PTZ00142        125 LYIGMGVSG  133 (474)
T ss_pred             CEECCCCCC
T ss_conf             186478884


No 132
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=56.03  E-value=13  Score=16.27  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=12.6

Q ss_pred             CHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             12104289999989981893202
Q gi|254780546|r  168 PFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       168 PLL~~~r~~l~~~~~~~~i~wve  190 (423)
                      |=..=.=.+|-.+|++++|+.+-
T Consensus       218 PR~~D~i~eiAklC~~~~IpHvV  240 (444)
T TIGR03531       218 PRSPDDIEEIAKICAKYDIPHVV  240 (444)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             99976699999999974998378


No 133
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=55.58  E-value=13  Score=16.22  Aligned_cols=86  Identities=21%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
Q ss_conf             83999966942489999999999986489972999999667798784689999999998718988999975047877803
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM   99 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~   99 (423)
                      .||+|=+||+.-.+  -.++... . .+..+.++..+.-|+   +++     .+-+.|++.|||+.++......   +  
T Consensus         2 kkiavl~SG~GSNl--~aii~a~-~-~~~l~~~i~~Visn~---~~a-----~~l~~A~~~~Ip~~~i~~~~~~---~--   64 (200)
T PRK05647          2 KRIVVLASGNGSNL--QAIIDAC-A-AGQLPAEVVAVISDR---PDA-----YGLERAEQAGIPTFVLDHKDFP---S--   64 (200)
T ss_pred             CEEEEEECCCCHHH--HHHHHHH-H-CCCCCCEEEEEEECC---CCC-----HHHHHHHHCCCCEEEECCCCCC---C--
T ss_conf             78999991580449--9999998-7-599994899999789---753-----6659999759976996776679---9--


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             78885455554320012344201234
Q gi|254780546|r  100 AAAREARYALISEHAKTINATLIMTA  125 (423)
Q Consensus       100 ~~ar~~r~~~~~~~~~~~~~~~l~~a  125 (423)
                         |...-..+.+...+...+.++++
T Consensus        65 ---r~~~d~~i~~~L~~~~vDlIvLA   87 (200)
T PRK05647         65 ---REAFDAALVEALDAYEPDLVVLA   87 (200)
T ss_pred             ---HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             ---89999999999986499999998


No 134
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=52.81  E-value=15  Score=15.92  Aligned_cols=26  Identities=8%  Similarity=0.202  Sum_probs=14.7

Q ss_pred             CCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf             04499799847783375578989999
Q gi|254780546|r  244 VHMRSIIAISQDILNIDSTLLFYLLR  269 (423)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~r~l~  269 (423)
                      .++....+++.....++-..+.++.+
T Consensus       172 Lh~p~VLfLDEpTvgLDV~aq~~ir~  197 (325)
T COG4586         172 LHPPKVLFLDEPTVGLDVNAQANIRE  197 (325)
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             68983897448745751438999999


No 135
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=52.29  E-value=12  Score=16.48  Aligned_cols=58  Identities=10%  Similarity=0.011  Sum_probs=43.6

Q ss_pred             HHHHHHCCCCEEEEEEECC--CCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             9999871898899997504--78778--0378885455554320012344201234566656
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS--KPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~--~~~~~--~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                      -++++++|+.++-..+++.  .|.+.  .-+.+--..|+.+...+.+.|+.-++|-||-|--
T Consensus        73 i~lm~~lG~~~yRFSIsWsRI~P~g~~~~~N~~gl~~Y~~lId~l~~~GI~P~VTL~H~d~P  134 (479)
T PRK09589         73 IQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP  134 (479)
T ss_pred             HHHHHHCCCCEEEEECCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf             99999819997885436766124787788699999999999999998399779972565673


No 136
>KOG2303 consensus
Probab=52.10  E-value=15  Score=15.84  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             79983999966942489999999999
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSV   42 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~   42 (423)
                      ....-+.+-+|||.||.+.+.+.+.+
T Consensus       347 s~~aGfflPLSGG~DSsatA~iV~sM  372 (706)
T KOG2303         347 SGQAGFFLPLSGGVDSSATAAIVYSM  372 (706)
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             38874477647886405899999999


No 137
>TIGR03356 BGL beta-galactosidase.
Probab=51.76  E-value=11  Score=16.71  Aligned_cols=58  Identities=14%  Similarity=0.080  Sum_probs=44.2

Q ss_pred             HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             9999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                      -++++++|+..+-..+++.  .|. .+.-+.+-...|+.+.+.+.+.|+.-++|-||-|--
T Consensus        60 i~l~~~lG~~~yRfSI~WsRI~P~g~g~~N~~gl~~Y~~~i~~l~~~GIeP~VTL~Hfd~P  120 (427)
T TIGR03356        60 VALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP  120 (427)
T ss_pred             HHHHHHCCCCEEEEECCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCH
T ss_conf             9999982999898325576543089898899999999999999998098789998556782


No 138
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=51.23  E-value=13  Score=16.21  Aligned_cols=57  Identities=14%  Similarity=0.064  Sum_probs=43.8

Q ss_pred             HHHHHHCCCCEEEEEEECC--CCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             9999871898899997504--787780--37888545555432001234420123456665
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS--KPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~--~~~~~~--~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      -++++++|+..+-..+++.  .|.++.  -+.+-...|+.+.+.+.+.|+.-++|-||-|=
T Consensus        79 i~lm~~lG~~~YRFSIsWsRI~P~g~~~~~N~~gv~~Y~~lId~l~~~GI~P~VTL~H~dl  139 (478)
T PRK09593         79 LALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC  139 (478)
T ss_pred             HHHHHHHCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9999981999886323374534678988869999999999999999839926998417778


No 139
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773    Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=51.19  E-value=16  Score=15.74  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=9.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             84689999999998718988999
Q gi|254780546|r   65 TAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        65 ~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      .|.+|.+-++++|++++|-+.|=
T Consensus       212 As~eWLq~l~~lCr~~DILLIVD  234 (413)
T TIGR02407       212 ASKEWLQRLEKLCRRHDILLIVD  234 (413)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             23557999999998649868773


No 140
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=50.98  E-value=13  Score=16.20  Aligned_cols=57  Identities=16%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      -++++++|+.++-..+++.  .|. .+.-+.+--..|..+.+.+.+.|+.-++|-||-|-
T Consensus        60 i~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H~d~  119 (470)
T PRK13511         60 LKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDT  119 (470)
T ss_pred             HHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             999998299978875127545868999859999999999999999819878999838898


No 141
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal  D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue.  A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.37  E-value=16  Score=15.66  Aligned_cols=24  Identities=25%  Similarity=0.069  Sum_probs=11.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             999669424899999999999864
Q gi|254780546|r   23 LVAVSGGSDSMGLLIALHSVLSDR   46 (423)
Q Consensus        23 ~vAvSGG~DS~aLl~ll~~~~~~~   46 (423)
                      +||-|++.+....+....++++..
T Consensus         3 ivaPS~~~~~~~~~~~~~~~L~~~   26 (282)
T cd07025           3 IVAPSSPIDEEERLERAIARLESL   26 (282)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             991899999889999999999968


No 142
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=47.45  E-value=17  Score=15.49  Aligned_cols=58  Identities=19%  Similarity=0.074  Sum_probs=43.9

Q ss_pred             HHHHHHCCCCEEEEEEECC--CCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             9999871898899997504--787780--378885455554320012344201234566656
Q gi|254780546|r   74 SDVCSRLRIAHSVVSWKNS--KPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~~~~~--~~~~~~--~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                      -++++++|+.++-..+++.  .|.++.  -+.+--..|..+.+.+.+.|+.-++|-||-|=-
T Consensus        77 i~l~~~lG~~~YRFSIsWsRI~P~g~~~~~N~~gl~~Y~~lId~l~~~GI~P~VTL~H~dlP  138 (474)
T PRK09852         77 IALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP  138 (474)
T ss_pred             HHHHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             99999809997885436766005788788799999999999999998298589982686553


No 143
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289   Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis .   This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=47.36  E-value=18  Score=15.34  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=73.7

Q ss_pred             CCCCEEEEEECCCH-------HHHHHH----HHHHHHHHHCCCCCEEEEEEEECCCCCCCHH------------------
Q ss_conf             79983999966942-------489999----9999999864899729999996677987846------------------
Q gi|254780546|r   17 VYPAHILVAVSGGS-------DSMGLL----IALHSVLSDRSFGKIKFSAISVDHCLRETAK------------------   67 (423)
Q Consensus        17 ~~~~~i~vAvSGG~-------DS~aLl----~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~------------------   67 (423)
                      ...+.|+|++|=|.       |-....    -+.+.+..+... +.- +|+|.|||-.-|+-                  
T Consensus        38 e~~SPVI~q~SeGA~KY~GkGd~~~G~~~~~~mV~~L~E~~~~-tVP-VaLHLDHG~s~E~c~~AI~aGfsSVMIDgShl  115 (339)
T TIGR01859        38 EERSPVIVQVSEGAIKYMGKGDATLGYKVAVAMVKTLIESMSI-TVP-VALHLDHGSSYESCIKAIKAGFSSVMIDGSHL  115 (339)
T ss_pred             HHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-CEE-EEEECCCCCCHHHHHHHHHCCCCEEECCCCCC
T ss_conf             7368755312027874048531778899999999999986799-320-68646887648999999964981672024268


Q ss_pred             ------HHHHHHHHHHHHCC--CCEEE--EEEECCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             ------89999999998718--98899--997504787-78037888545555432001234420123456665668999
Q gi|254780546|r   68 ------DEVRYVSDVCSRLR--IAHSV--VSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY  136 (423)
Q Consensus        68 ------~e~~~v~~~~~~lg--i~~~~--~~~~~~~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l  136 (423)
                            +.+..|-+++...|  |.-..  =++-+..+. .-++..+.-+--.-....+++.+.++|+-|-          
T Consensus       116 P~EEN~~~Tkkvve~Ah~~GDYvSVEaElG~~gG~ED~i~V~~~~~~ladp~Ea~~fV~eT~~D~LA~aI----------  185 (339)
T TIGR01859       116 PFEENVALTKKVVEIAHAKGDYVSVEAELGTIGGIEDGIVVVEKEGELADPDEAEQFVKETGVDYLAAAI----------  185 (339)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEEEECEECCEECCEEEEECCCEECCHHHHHHHHHHCCCCEECCCC----------
T ss_conf             7888888889999999851997999998430352762737871563675879999999763877540100----------


Q ss_pred             HHHHCCCCCCCCCCCCCCCC-CCCCCCCEEECCHHCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf             98623654443322357641-00357968710121042899999899818-932026
Q gi|254780546|r  137 MRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRN-ISWCED  191 (423)
Q Consensus       137 ~rl~r~sg~~g~~l~~~~~~-~~~~~~~~i~RPLL~~~r~~l~~~~~~~~-i~wveD  191 (423)
                           |+-. |  ..-.+.. .....++.++=|-|+|.  .|...-+.-+ +|-|==
T Consensus       186 -----Gt~H-G--a~kykgeqCtrnaDGvLiWp~LdF~--~l~~I~~~~~G~PLVLH  232 (339)
T TIGR01859       186 -----GTSH-G--AFKYKGEQCTRNADGVLIWPGLDFE--RLKEIKELTNGIPLVLH  232 (339)
T ss_pred             -----CCCC-C--CCCCCCCCCCCCCCCEECCCCCCHH--HHHHHHHHHCCCCEEEC
T ss_conf             -----3502-3--5788866533046723548888978--99999875089766735


No 144
>pfam00232 Glyco_hydro_1 Glycosyl hydrolase family 1.
Probab=47.02  E-value=15  Score=15.86  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=44.1

Q ss_pred             HHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r   75 DVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ  131 (423)
Q Consensus        75 ~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~  131 (423)
                      ++++++|+..+-..+++.  .|. .+.-+.+--..|+.+.+.+.+.|+.-++|-||-|--
T Consensus        65 ~l~~~lG~~ayRfSIsWsRI~P~g~g~~N~~gl~~Y~~li~~l~~~GIeP~VTL~Hfd~P  124 (454)
T pfam00232        65 ALMKELGVTAYRFSISWPRIFPKGEGEINEAGLDYYDRLIDELLAAGIEPYVTLYHWDLP  124 (454)
T ss_pred             HHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf             999973999898225698754289898598999999999999998499689985277766


No 145
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=46.62  E-value=17  Score=15.55  Aligned_cols=77  Identities=23%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             6989999999985279983999966942--48999999999998648997299999966779878468999999999871
Q gi|254780546|r    3 LSPIESVRFFVRSLVYPAHILVAVSGGS--DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL   80 (423)
Q Consensus         3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~--DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~l   80 (423)
                      +.|..++..|+.+|.+|++|++-|--|.  |.+  ...+.-++..        -=+.||-|-...-|  ...-.+...+.
T Consensus        52 i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~--I~~L~p~Le~--------gDIiIDGGNs~y~D--T~RR~~eL~~~  119 (473)
T COG0362          52 IVPAYSIEEFVASLEKPRKILLMVKAGTPVDAV--IEQLLPLLEK--------GDIIIDGGNSHYKD--TIRRNKELSEK  119 (473)
T ss_pred             CCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHH--HHHHHHHCCC--------CCEEEECCCCCCCH--HHHHHHHHHHC
T ss_conf             456685999998715884699998269927899--9998752578--------89898688767820--78999998863


Q ss_pred             CCCEEEEEEEC
Q ss_conf             89889999750
Q gi|254780546|r   81 RIAHSVVSWKN   91 (423)
Q Consensus        81 gi~~~~~~~~~   91 (423)
                      ||-|.-.-+.+
T Consensus       120 Gi~FvG~GVSG  130 (473)
T COG0362         120 GILFVGMGVSG  130 (473)
T ss_pred             CCEEEECCCCC
T ss_conf             88489516666


No 146
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=46.60  E-value=18  Score=15.26  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             6899999999987189889999
Q gi|254780546|r   67 KDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        67 ~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      .+|...+...|++.|++...++
T Consensus        99 T~el~~~~~~aK~~g~~liaiT  120 (202)
T COG0794          99 TKELLNLAPKAKRLGAKLIAIT  120 (202)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEE
T ss_conf             7799999999997599489995


No 147
>KOG2644 consensus
Probab=46.58  E-value=18  Score=15.26  Aligned_cols=22  Identities=27%  Similarity=0.677  Sum_probs=12.0

Q ss_pred             CHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             1210428999998998189320
Q gi|254780546|r  168 PFLRCRREDIRSFLLQRNISWC  189 (423)
Q Consensus       168 PLL~~~r~~l~~~~~~~~i~wv  189 (423)
                      |+|+++=.++-++.+....+++
T Consensus       208 pll~ws~t~vw~~l~~~~~p~c  229 (282)
T KOG2644         208 PLLEWSYTDVWDLLREGNLPYC  229 (282)
T ss_pred             CCCCCHHHHHHHHHHCCCCCEE
T ss_conf             6344148789999861797636


No 148
>pfam01182 Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.
Probab=46.53  E-value=18  Score=15.26  Aligned_cols=102  Identities=10%  Similarity=0.092  Sum_probs=60.0

Q ss_pred             HHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCCHHH-HHHH-HHHHHHHCCCC
Q ss_conf             9999985279983-999966942489999999999986489972999999667--79878468-9999-99999871898
Q gi|254780546|r    9 VRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKD-EVRY-VSDVCSRLRIA   83 (423)
Q Consensus         9 ~~~~~~~l~~~~~-i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH--glr~~s~~-e~~~-v~~~~~~lgi~   83 (423)
                      |++-.+-+++.+| +++|++||.-=+.+...|.+..+.....--+++.++.|-  |+.++..+ -..+ -+.+...++||
T Consensus         7 ~~~i~~~~~~~~k~~vlgLatG~TP~~~Y~~L~~~~~~~~i~~~~v~~F~lDEyvgl~~~~p~S~~~~l~~~l~~~i~Ip   86 (236)
T pfam01182         7 INRINSFKPTAERPFVLGLPTGSTPLGTYKKLIEAYKAGRVSFKHVVTFNMDEYVGLPPEHPESYHSFMYNNFFNHIDIP   86 (236)
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999619899998799838987889999999999981799736769983704458897642359999999987355998


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             899997504787780378885455554320
Q gi|254780546|r   84 HSVVSWKNSKPQTGLMAAAREARYALISEH  113 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~  113 (423)
                      ..-+..-. ....+.++.  ..+|......
T Consensus        87 ~eni~~~~-g~~~d~~~~--~~~ye~~I~~  113 (236)
T pfam01182        87 PENIHILN-GNAADIDAE--CRNYEEKIKS  113 (236)
T ss_pred             HHHCCCCC-CCCCCHHHH--HHHHHHHHHH
T ss_conf             99846899-998899999--9999999997


No 149
>KOG2316 consensus
Probab=45.24  E-value=19  Score=15.12  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-C-HHHHHH----------HHHHHHHHCCCCEEEEE
Q ss_conf             39999669424899999999999864899729999996677987-8-468999----------99999987189889999
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-T-AKDEVR----------YVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~-s~~e~~----------~v~~~~~~lgi~~~~~~   88 (423)
                      |++--+|||+||---++-+..    .   +-+++|+-   +|+| + +.+|..          -+.-+++-+++|.+..+
T Consensus         2 rvvaLiSGGKDScynmm~cv~----~---gHeiVaLa---nl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~   71 (277)
T KOG2316           2 RVVALISGGKDSCYNMMCCVR----L---GHEIVALA---NLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRR   71 (277)
T ss_pred             CEEEEEECCHHHHHHHHHHHH----C---CCEEEEEE---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             189997178078999999998----4---87435643---2468755520577889886027789999998468346642


Q ss_pred             EECCC
Q ss_conf             75047
Q gi|254780546|r   89 WKNSK   93 (423)
Q Consensus        89 ~~~~~   93 (423)
                      .....
T Consensus        72 i~g~s   76 (277)
T KOG2316          72 IRGRS   76 (277)
T ss_pred             CCCCC
T ss_conf             14864


No 150
>pfam08497 Radical_SAM_N Radical SAM N-terminal. This domain tends to occur to the N-terminus of the pfam04055 domain in hypothetical bacterial proteins.
Probab=45.21  E-value=16  Score=15.57  Aligned_cols=20  Identities=5%  Similarity=0.099  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEE
Q ss_conf             99999999871898899997
Q gi|254780546|r   70 VRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        70 ~~~v~~~~~~lgi~~~~~~~   89 (423)
                      +..+..+.+..|...-|+..
T Consensus        35 ~AiIgR~Le~~GyrVgIIaQ   54 (298)
T pfam08497        35 MAIIGRVLEAQGFRVGIIAQ   54 (298)
T ss_pred             HHHHHHHHHHCCCEEEEEEC
T ss_conf             89999999986965989718


No 151
>pfam10309 DUF2414 Protein of unknown function (DUF2414). This is a family of proteins conserved from fungi to mammals. One mouse member is referred to as ELG protein but this is not a homologue of human ELG protein. The function is not known.
Probab=44.65  E-value=16  Score=15.61  Aligned_cols=34  Identities=24%  Similarity=0.480  Sum_probs=22.9

Q ss_pred             ECCHHCCCHHHHHHHHHHH----C---CCCCCCCCCCCCCCC
Q ss_conf             1012104289999989981----8---932026678642210
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQR----N---ISWCEDPSNTDDRFE  200 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~----~---i~wveDpSN~d~~f~  200 (423)
                      +|=+=.++-++|..|..++    +   |.||+|.| .+.-|.
T Consensus        10 irGVD~lsT~Dik~y~~~y~~~~~p~~IEWIdDtS-~Nvvf~   50 (62)
T pfam10309        10 IRGVDELSTDDIKAYVKEYFDEESPFRIEWIDDTS-ANIVFK   50 (62)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC-EEEEEC
T ss_conf             97278798799999999975658970489865983-799977


No 152
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.69  E-value=20  Score=14.96  Aligned_cols=14  Identities=21%  Similarity=0.150  Sum_probs=5.7

Q ss_pred             HHHHHHHC-CCCEEE
Q ss_conf             99999871-898899
Q gi|254780546|r   73 VSDVCSRL-RIAHSV   86 (423)
Q Consensus        73 v~~~~~~l-gi~~~~   86 (423)
                      +..+++.+ |+....
T Consensus        47 ~~~i~~~~~~~~~~~   61 (269)
T cd01568          47 AEEVFELLDGIEVEW   61 (269)
T ss_pred             HHHHHHHCCCEEEEE
T ss_conf             999999859819999


No 153
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=43.68  E-value=20  Score=14.96  Aligned_cols=79  Identities=19%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             69899999999852799839999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r    3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI   82 (423)
Q Consensus         3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi   82 (423)
                      +.|.+.+..|+.+|.+|++|++-|--|..--..+.-+..++  .+      --+.||.|-..  -.+...-.+.|++.||
T Consensus        39 ~~~~~~l~e~v~sl~~PR~IilmV~aG~~vD~vI~~L~~~L--~~------gDIiIDgGNS~--y~dT~rR~~~l~~kgI  108 (459)
T PRK09287         39 IVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL--EK------GDIIIDGGNSN--YTDTIRREKELAEKGI  108 (459)
T ss_pred             CCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CC------CCEEEECCCCC--HHHHHHHHHHHHHCCC
T ss_conf             50358999999736788879998168842999999998508--89------99898799976--4337999999997599


Q ss_pred             CEEEEEEEC
Q ss_conf             889999750
Q gi|254780546|r   83 AHSVVSWKN   91 (423)
Q Consensus        83 ~~~~~~~~~   91 (423)
                      .|.-.-+.+
T Consensus       109 ~Flg~GVSG  117 (459)
T PRK09287        109 HFIGMGVSG  117 (459)
T ss_pred             EEECCCCCC
T ss_conf             064578888


No 154
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=42.98  E-value=20  Score=14.89  Aligned_cols=50  Identities=22%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf             8999999998527998399996694248999999999998648997299999966779
Q gi|254780546|r    5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL   62 (423)
Q Consensus         5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl   62 (423)
                      |.+.+..++..+.....|+|-|-+|..|+..+..|.+    .++   + .+.+++.|+
T Consensus        44 p~~~l~~~~~~~~~d~~ivv~C~~G~rS~~aa~~L~~----~Gf---~-~V~~l~GG~   93 (104)
T PRK00162         44 TNDSLGAFMRDADFDTPVMVMCYHGNSSQGAAQYLLQ----QGF---D-VVYSIDGGF   93 (104)
T ss_pred             CHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH----CCC---C-CEEEECCHH
T ss_conf             9899999997368889889995988189999999997----376---4-389815459


No 155
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , :  The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand.  The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 .  The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain.      The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=41.81  E-value=21  Score=14.77  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC-------------CCHHHHHHHHHHHHHHCC
Q ss_conf             5279983999966942489999999999986489972999999667798-------------784689999999998718
Q gi|254780546|r   15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------------ETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus        15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr-------------~~s~~e~~~v~~~~~~lg   81 (423)
                      ......+|+|=|+||.=|.-|.-.+....+.... +..+.|+-  .+..             |+...--...++....+|
T Consensus        42 ~~~n~~~iLl~CaaGmstsLLv~~l~k~A~~~~~-~~~i~A~~--~~~~~e~~~~~d~VlLaPQ~~~~~~~lk~~t~~~G  118 (142)
T TIGR00853        42 NIMNETNILLLCAAGMSTSLLVNKLNKAAKEYGV-PVKIAAVS--YGAAMEILDDADVVLLAPQVAYMLPDLKKETDKKG  118 (142)
T ss_pred             HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEEEC--CCHHHHHHHHHCEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf             2003211688876973547899999999984599-75888405--76344335350431120326755799998513589


Q ss_pred             CCEEEEE
Q ss_conf             9889999
Q gi|254780546|r   82 IAHSVVS   88 (423)
Q Consensus        82 i~~~~~~   88 (423)
                      ||..+..
T Consensus       119 ip~~~i~  125 (142)
T TIGR00853       119 IPVEVIN  125 (142)
T ss_pred             CCEEEEC
T ss_conf             7536638


No 156
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.53  E-value=22  Score=14.74  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
Q ss_conf             3999966942489-999999999986489972999999667798784689999999998718988999975047877803
Q gi|254780546|r   21 HILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM   99 (423)
Q Consensus        21 ~i~vAvSGG~DS~-aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~   99 (423)
                      ||+|=.||+.--+ +++..+    . .+..+.++.++..|+.        -.++.+.+++.|||..++.-....      
T Consensus         2 ki~VlaSG~GSNlqaiida~----~-~~~~~a~i~~Visd~~--------~A~~lerA~~~gIpt~~~~~k~~~------   62 (200)
T COG0299           2 KIAVLASGNGSNLQAIIDAI----K-GGKLDAEIVAVISDKA--------DAYALERAAKAGIPTVVLDRKEFP------   62 (200)
T ss_pred             EEEEEEECCCCCHHHHHHHH----H-CCCCCCEEEEEEECCC--------CCHHHHHHHHCCCCEEEECCCCCC------
T ss_conf             49999947965599999987----6-4898817999995797--------778999999849988974445678------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             788854555543200123442012345
Q gi|254780546|r  100 AAAREARYALISEHAKTINATLIMTAH  126 (423)
Q Consensus       100 ~~ar~~r~~~~~~~~~~~~~~~l~~ah  126 (423)
                        .|.+.-..+.....+.+.+.+++|=
T Consensus        63 --~r~~~d~~l~~~l~~~~~dlvvLAG   87 (200)
T COG0299          63 --SREAFDRALVEALDEYGPDLVVLAG   87 (200)
T ss_pred             --CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             --7789999999999852999999866


No 157
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.28  E-value=22  Score=14.61  Aligned_cols=59  Identities=12%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999669424899999999999864899729999996677987846899999999987189889999
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      .+|+..|-.-.+.++.+++.+.. +   +.++..++.|.- |..+   .+..+.+|+.+|+|++...
T Consensus         4 ~lvGptGvGKTTTiaKLA~~~~~-~---~~kV~lit~Dt~-R~gA---~eQL~~~a~~l~v~~~~~~   62 (173)
T cd03115           4 LLVGLQGVGKTTTAAKLALYLKK-K---GKKVLLVAADTY-RPAA---IEQLRVLGEQVGVPVFEEG   62 (173)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-C---CCEEEEEECCCC-CHHH---HHHHHHHHHHCCCEEEECC
T ss_conf             99899999889999999999997-6---992899974887-5779---9999999997498599227


No 158
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=39.14  E-value=23  Score=14.49  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=35.9

Q ss_pred             CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHH
Q ss_conf             8997299999966779878468999999999871898899997504787780378885
Q gi|254780546|r   47 SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE  104 (423)
Q Consensus        47 ~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~  104 (423)
                      ..|+-++.+...|-|-|++       ++++|+++|+.+....-..-.+.+|+..+-..
T Consensus       300 DYP~dKl~VyvLDDG~R~e-------~r~lAeelGv~YitR~~N~HAKAGNLNhAL~~  350 (858)
T PRK11498        300 DWPKDKLNIWILDDGGREE-------FRQFAQEVGVGYIARPTHEHAKAGNINNALKY  350 (858)
T ss_pred             CCCHHHCEEEEECCCCCHH-------HHHHHHHHCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf             9980117699932999989-------99999985997673688866642267888864


No 159
>PRK13937 phosphoheptose isomerase; Provisional
Probab=38.09  E-value=24  Score=14.38  Aligned_cols=51  Identities=14%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECC
Q ss_conf             999998527998399996694248999999999998648--9972999999667
Q gi|254780546|r    9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDH   60 (423)
Q Consensus         9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~--~~~~~l~a~~vdH   60 (423)
                      +....+.+..+.+|.+.=.||+-|.|- |++.++..+-.  .+++....++-|.
T Consensus        32 a~~i~~~~~~g~kI~~~GNGGSaa~A~-Hfa~dl~~~~~~~r~~lpaisL~~d~   84 (192)
T PRK13937         32 AEALIEALASGGKLLLCGNGGSAADAQ-HIAAELVGRYKKERPALPAIALTTDT   84 (192)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHHHCCCCCCCCCCCEEECCCCH
T ss_conf             999999998799899996863188899-99999964135578985357767882


No 160
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733   Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway .   TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=37.99  E-value=24  Score=14.37  Aligned_cols=23  Identities=9%  Similarity=0.261  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             46899999999987189889999
Q gi|254780546|r   66 AKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        66 s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      --++++.++++|++++|+|.|-.
T Consensus        51 ~~~~A~~l~~lc~~y~~~f~vND   73 (210)
T TIGR00693        51 RLELAEKLRELCRKYGVPFIVND   73 (210)
T ss_pred             HHHHHHHHHHHHHHCCCCEEECC
T ss_conf             99999999999987089768828


No 161
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=37.89  E-value=24  Score=14.36  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=16.2

Q ss_pred             HHHHHHHHHCC------------CCCEEEEEECCCHH
Q ss_conf             99999998527------------99839999669424
Q gi|254780546|r    7 ESVRFFVRSLV------------YPAHILVAVSGGSD   31 (423)
Q Consensus         7 ~~~~~~~~~l~------------~~~~i~vAvSGG~D   31 (423)
                      ++.++|++..+            .-.+|+||+|||.=
T Consensus        51 ~aL~~~L~~~~~~~~d~~~~~~~~~P~Igia~SGGGy   87 (549)
T smart00022       51 EAMKSFLGRANSNFLDSSLLNSSDVPVIAIAGSGGGF   87 (549)
T ss_pred             HHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEECCCCH
T ss_conf             9999999754798886543266679859999568769


No 162
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900    6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway.  6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=37.83  E-value=24  Score=14.35  Aligned_cols=105  Identities=18%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             HHHHHHH-HHCCCCCEEEEEECCCHHHHHHHHHHHHHHH--HCCCCCEEEEEEEECCCCCCCHHHHHH---HHHHHHHHC
Q ss_conf             9999999-8527998399996694248999999999998--648997299999966779878468999---999999871
Q gi|254780546|r    7 ESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCSRL   80 (423)
Q Consensus         7 ~~~~~~~-~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~--~~~~~~~~l~a~~vdHglr~~s~~e~~---~v~~~~~~l   80 (423)
                      +.|..++ +-|.+..++.||||||.=-.+|+-.|..-..  .-++.  +++..=+|--+=|.++.|--   .=..+.++.
T Consensus        14 ~~~~~~~~~Al~~~~~~~~alSGGr~p~~L~~~La~~~~~~~~~W~--~~~~~l~DER~VP~~h~dSN~~~~r~~LL~~~   91 (251)
T TIGR01198        14 ERIATKLQKALAERGQFLLALSGGRSPIALLEALAAQEAGSKLDWS--RIHLFLGDERYVPLDHADSNTGLAREALLDRV   91 (251)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCC--CEEEEEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999999999997689689982487457899997786343658802--15788632321479880466899999974036


Q ss_pred             CCCEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHCC
Q ss_conf             89889999750478---778037888545555432001
Q gi|254780546|r   81 RIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAK  115 (423)
Q Consensus        81 gi~~~~~~~~~~~~---~~~~~~~ar~~r~~~~~~~~~  115 (423)
                      .||..-+..-....   +..++..|..  |..-.....
T Consensus        92 ~i~~~~i~~~~~~~~~~g~~~e~~A~~--y~~~l~~~~  127 (251)
T TIGR01198        92 AIPASNIHPMPTELSELGADIEEAAEL--YEQELAAAF  127 (251)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHH
T ss_conf             786214776776663226865035899--999988762


No 163
>pfam08727 P3A Poliovirus 3A protein like. This domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.
Probab=37.40  E-value=22  Score=14.62  Aligned_cols=30  Identities=20%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             HHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf             2104289999989981893202667864221018
Q gi|254780546|r  169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV  202 (423)
Q Consensus       169 LL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~  202 (423)
                      |-.+.-+|+++||+.+|  |+- |. .+..-||+
T Consensus        24 L~SVds~EVr~YC~~kg--Wiv-p~-~~~~iEr~   53 (57)
T pfam08727        24 LQSVDSPEVREYCEKKG--WIV-PA-TETTIERN   53 (57)
T ss_pred             HHHCCCHHHHHHHHHCC--CCC-CC-CCHHHHHH
T ss_conf             98658799999999779--444-57-52047766


No 164
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=36.95  E-value=25  Score=14.26  Aligned_cols=14  Identities=43%  Similarity=0.513  Sum_probs=11.1

Q ss_pred             CEEEEEECCCHHHH
Q ss_conf             83999966942489
Q gi|254780546|r   20 AHILVAVSGGSDSM   33 (423)
Q Consensus        20 ~~i~vAvSGG~DS~   33 (423)
                      .+|+||+|||.==.
T Consensus        63 P~IgiA~SGGGyRA   76 (552)
T cd07203          63 PRIGIAVSGGGYRA   76 (552)
T ss_pred             CEEEEEECCCCHHH
T ss_conf             86999845864999


No 165
>PRK10162 acetyl esterase; Provisional
Probab=36.41  E-value=26  Score=14.20  Aligned_cols=14  Identities=7%  Similarity=0.135  Sum_probs=7.4

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             04289999989981
Q gi|254780546|r  171 RCRREDIRSFLLQR  184 (423)
Q Consensus       171 ~~~r~~l~~~~~~~  184 (423)
                      .++++.+..|...+
T Consensus       215 ~lt~~~~~~~~~~y  228 (319)
T PRK10162        215 GLTQQDLQMYEEAY  228 (319)
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             55899999999985


No 166
>PRK13832 plasmid partitioning protein; Provisional
Probab=35.76  E-value=20  Score=15.01  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=19.7

Q ss_pred             HHHHHHCCCCCCC---CCCCCCCCCHH
Q ss_conf             9899818932026---67864221018
Q gi|254780546|r  179 SFLLQRNISWCED---PSNTDDRFERV  202 (423)
Q Consensus       179 ~~~~~~~i~wveD---pSN~d~~f~R~  202 (423)
                      +.++.+||.|+||   |.++|.+|.-+
T Consensus       214 dlAqayGi~W~EDLFapadeD~RYttd  240 (518)
T PRK13832        214 DLAQAYGIVWVEDLFAPADEDSRYTTD  240 (518)
T ss_pred             HHHHHHCCEEEHHHCCCCCCCCCCCCH
T ss_conf             899971855405413776644454322


No 167
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=35.70  E-value=26  Score=14.12  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99996694248999999999998648997299999966779878468999999999871898899997
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      .+|+..|=.-.+.++.+++.+.. +   +.++..++.|.- |..+   .+..+.+|+.+|+|++....
T Consensus         5 ~lvGptGvGKTTTiaKLAa~~~~-~---~~~V~lit~Dt~-R~gA---~eQL~~ya~~l~v~~~~~~~   64 (196)
T pfam00448         5 LLVGLQGSGKTTTIAKLAAYLKK-Q---GKKVLLVAADTF-RAAA---IEQLKQLAERLGVPVFGSGT   64 (196)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-C---CCEEEEEECCCC-CHHH---HHHHHHHHHHCCCEEEECCC
T ss_conf             99899999889999999999997-7---992899975877-6889---99999999863981781487


No 168
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=35.12  E-value=27  Score=14.06  Aligned_cols=19  Identities=16%  Similarity=-0.045  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             6665668999986236544
Q gi|254780546|r  127 TFDDQLETVYMRSQRDYAE  145 (423)
Q Consensus       127 ~~dD~~Et~l~rl~r~sg~  145 (423)
                      -+|=-+|-|+--.+|.+|+
T Consensus       302 GaDLGaEKF~dIKcr~~gl  320 (555)
T pfam01268       302 GADLGAEKFFDIKCRKSGL  320 (555)
T ss_pred             CCCCCCHHHCCEEHHCCCC
T ss_conf             6665623430100220599


No 169
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=35.11  E-value=27  Score=14.06  Aligned_cols=131  Identities=18%  Similarity=0.222  Sum_probs=82.8

Q ss_pred             HHHCCCCCEEEEEECCCHHHHHHHHHHHHHH---HHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             9852799839999669424899999999999---8648997299999966779878468999999999871898899997
Q gi|254780546|r   13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVL---SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW   89 (423)
Q Consensus        13 ~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~---~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~   89 (423)
                      .+.+..|..++|-||--.|.-.+---++.+.   ..+-+..+.+-.+-|-+- +.+...-+..|+..++..++|......
T Consensus        85 ektF~npt~~av~v~D~m~e~ei~~r~~~i~~~~~~rvG~~l~~d~vAvr~~-s~d~~~fa~~vk~va~~~~~pliL~s~  163 (454)
T PRK04165         85 EKTFFNPTGIAVDVSDTMSEEEIDERLKEINNFQFERVGEILKLDAVALRNV-SGDPEKFAKAVKKVAETTELPLILCSF  163 (454)
T ss_pred             CEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEECCEEEEEEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             1010079826999337777899999999865125677234115208999917-899899999999997216997799838


Q ss_pred             ECC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             504---------787780378885455554320012344201234566656689999862365444
Q gi|254780546|r   90 KNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK  146 (423)
Q Consensus        90 ~~~---------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~  146 (423)
                      +..         +...-+--.|-...|..+.+.+++.++-..+.|-++++..+..  ..+...|++
T Consensus       164 dp~vl~aaL~~~~~~kPLlyaAt~~N~~~m~~LA~~~~~Pl~V~a~~L~~L~~l~--~~~~~~Gik  227 (454)
T PRK04165        164 DPAVLKAALEVVADRRPLLYAATKDNWKEMAELAKEYNCPLVVSAPNLEELKSLV--KKLQAAGIK  227 (454)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH--HHHHHCCCC
T ss_conf             9999999999745379755227898899999999874984799779989999999--999976985


No 170
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC).    Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.    The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=35.03  E-value=24  Score=14.42  Aligned_cols=115  Identities=22%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             HCCCCCEEE-EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-------------------------------CC
Q ss_conf             527998399-9966942489999999999986489972999999667-------------------------------79
Q gi|254780546|r   15 SLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-------------------------------CL   62 (423)
Q Consensus        15 ~l~~~~~i~-vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH-------------------------------gl   62 (423)
                      +++.+++|+ ++=||-.-|| ||-|.+-+..  |..+ +|.+=-+||                               ||
T Consensus        20 ~V~~Ge~VAi~GpSGAGKST-LLnLiAGF~~--PasG-~i~~nd~~~t~~aPy~RPvSMLFQEnNLF~HLTV~~NigLGl   95 (213)
T TIGR01277        20 SVEDGERVAILGPSGAGKST-LLNLIAGFLE--PASG-EIKVNDKDHTRLAPYRRPVSMLFQENNLFAHLTVRQNIGLGL   95 (213)
T ss_pred             CCCCCCEEEEECCCCCCHHH-HHHHHHHHCC--CCCE-EEEECCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             13017768887589862788-9877864047--7640-588778012268887777503432210253024888865378


Q ss_pred             CCC---HHHHHHHHHHHHHHCCCCEEEEEEECC-------------------------CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             878---468999999999871898899997504-------------------------7877803788854555543200
Q gi|254780546|r   63 RET---AKDEVRYVSDVCSRLRIAHSVVSWKNS-------------------------KPQTGLMAAAREARYALISEHA  114 (423)
Q Consensus        63 r~~---s~~e~~~v~~~~~~lgi~~~~~~~~~~-------------------------~~~~~~~~~ar~~r~~~~~~~~  114 (423)
                      .|.   .+.+.+.+.+++...||.-+.-|....                         +|-+.+...=|..=..+....|
T Consensus        96 ~PgLKLnA~q~ek~~~~A~qvGi~dyl~RLP~~LSGGQrQRVALARClvr~~PIlLLDEPFSALDp~LR~EMLaLv~~lc  175 (213)
T TIGR01277        96 KPGLKLNAVQQEKVEDVARQVGIDDYLERLPEELSGGQRQRVALARCLVREKPILLLDEPFSALDPKLREEMLALVKKLC  175 (213)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf             86410156778999999973385789872501116733789999886417887300158811226788999999999765


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q ss_conf             1234420123456665668
Q gi|254780546|r  115 KTINATLIMTAHTFDDQLE  133 (423)
Q Consensus       115 ~~~~~~~l~~ah~~dD~~E  133 (423)
                      .+...+.++..||..|-+.
T Consensus       176 ~e~~~TllmVtH~~sda~~  194 (213)
T TIGR01277       176 DEKKLTLLMVTHSLSDAAA  194 (213)
T ss_pred             HCCCCEEEEEECCHHHHHH
T ss_conf             1036468998458899987


No 171
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=34.98  E-value=26  Score=14.16  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=13.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999899818932026678642
Q gi|254780546|r  177 IRSFLLQRNISWCEDPSNTDD  197 (423)
Q Consensus       177 l~~~~~~~~i~wveDpSN~d~  197 (423)
                      +..-+...++.|+|+|-+.+.
T Consensus        64 ~~~~l~~~~~~~~EeP~~~~d   84 (98)
T pfam01188        64 LARALEELGLTWIEEPLPADD   84 (98)
T ss_pred             HHHHHCCCCCEEEECCCCCCC
T ss_conf             998732579569979899999


No 172
>pfam00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin. Sometimes found as a bifunctional enzyme with pfam00925.
Probab=34.94  E-value=27  Score=14.04  Aligned_cols=105  Identities=15%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             HHHHHHCCCCEE------------EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH------------HH
Q ss_conf             999987189889------------999750478778037888545555432001234420123456------------66
Q gi|254780546|r   74 SDVCSRLRIAHS------------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT------------FD  129 (423)
Q Consensus        74 ~~~~~~lgi~~~------------~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~------------~d  129 (423)
                      .+.|++||+|+.            .+.++.....+++.+.-|..-.+.+++... ...+..--||-            ..
T Consensus        57 ~~~~~~LgLp~m~~~n~~~~~t~Ftvsvd~~~~~TGISa~DRa~Tir~la~~~~-~~~df~~PGHvfpL~a~~gGvl~R~  135 (193)
T pfam00926        57 EERADRLGLPPMVDRNTDRFGTAFTVSVDAKGTTTGISAADRALTIRALADPNA-FPEDFVRPGHVFPLRAKEGGVLERR  135 (193)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEECCCCCCHHHCCCCCEEECC
T ss_conf             999976699565555678878875988864888789789999999999848888-8332404896563014369860469


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             5668999986236544433223576410035796871012104289999989981893202
Q gi|254780546|r  130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       130 D~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wve  190 (423)
                      .+.|- ..-|.+.+|..-.  +.+......  ++.      -.+++++.+|+++++++.++
T Consensus       136 GHTEa-svdL~~lAGl~P~--avi~Eil~~--dG~------~~~~~~~~~fA~~~~lp~is  185 (193)
T pfam00926       136 GHTEA-AVDLARLAGLTPA--AVICEILND--DGT------MARLPDLEEFAKEHGLPLIT  185 (193)
T ss_pred             CHHHH-HHHHHHHCCCCCE--EEEEEEECC--CCC------CCCHHHHHHHHHHCCCCEEE
T ss_conf             66899-9999998199963--999998569--988------26889999999983997998


No 173
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=34.84  E-value=27  Score=14.03  Aligned_cols=20  Identities=15%  Similarity=0.297  Sum_probs=17.2

Q ss_pred             CCCHHHHHHHHHHHCCCCCC
Q ss_conf             04289999989981893202
Q gi|254780546|r  171 RCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       171 ~~~r~~l~~~~~~~~i~wve  190 (423)
                      ..++.++..|+++++++.++
T Consensus       189 ~m~~~~~~~fA~~~~l~~is  208 (218)
T PRK05773        189 SLSKEEAKRYARELGIPLVE  208 (218)
T ss_pred             CCCHHHHHHHHHHCCCCEEE
T ss_conf             65689999999983997998


No 174
>pfam00582 Usp Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.
Probab=34.55  E-value=27  Score=14.00  Aligned_cols=95  Identities=22%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH---------HHHHH--------HHHHHHHHCCC
Q ss_conf             83999966942489999999999986489972999999667798784---------68999--------99999987189
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR--------YVSDVCSRLRI   82 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s---------~~e~~--------~v~~~~~~lgi   82 (423)
                      .+|+|++-|...|...+..+.++....   +.+++++||-.--...+         .++..        .....+..-+.
T Consensus         3 k~Ilv~vD~s~~s~~al~~A~~~a~~~---~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (140)
T pfam00582         3 KRILVAVDGSEESERALEWALELAKRR---GAELILLHVIDPEPSGAASEALEEEEEEELEEEEAEAEALAEAAAEAGGV   79 (140)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             849999859999999999999999864---99799999962887554443330357999999999999999998635798


Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             889999750478778037888545555432001234420123456665
Q gi|254780546|r   83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD  130 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD  130 (423)
                      ...+....+ .+.            ..+...+.+.+++.++.|.|...
T Consensus        80 ~~~~~~~~g-~~~------------~~I~~~~~~~~~dliV~G~~~~~  114 (140)
T pfam00582        80 VVEVVVRGG-DPA------------EAILEVAEEEDADLIVMGSRGRS  114 (140)
T ss_pred             CEEEEEEEE-CHH------------HHHCEEECCCCCCEEEEECCCCC
T ss_conf             679999960-703------------64210000567888999289998


No 175
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=34.45  E-value=27  Score=13.99  Aligned_cols=66  Identities=18%  Similarity=0.269  Sum_probs=37.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH--HHHHH-HHHHHCCCCEE
Q ss_conf             983999966942489999999999986489972999999667798784689--99999-99987189889
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVS-DVCSRLRIAHS   85 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e--~~~v~-~~~~~lgi~~~   85 (423)
                      ..++.||+|||+==..+...|..... ....--+++.+.+|--.=+.++.+  ..+++ .+.....++-.
T Consensus        31 ~~~~~l~LsgGsTP~~~ye~L~~~~~-~~~~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l~~~~~~~~~   99 (238)
T COG0363          31 RGRAVLALSGGSTPLALYEALVKLPQ-GQLDWSKVTIFNLDERVVPPDDPESNYGLMRRNLFDHIDIPAE   99 (238)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             67579997689887999999996325-6898313389916311169988413999999986462567286


No 176
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases.  Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB.  E. coli  RihA is equally efficient with uridine a
Probab=34.40  E-value=28  Score=13.98  Aligned_cols=52  Identities=13%  Similarity=0.201  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC--CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9424899999999999864899729999996677987--8468999999999871898899
Q gi|254780546|r   28 GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVCSRLRIAHSV   86 (423)
Q Consensus        28 GG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~--~s~~e~~~v~~~~~~lgi~~~~   86 (423)
                      |.=|.+||++++.     .  +.++|.++|+-+|--+  .+..-+..+.+.|.+.+||.+.
T Consensus         9 G~DDa~Al~~al~-----~--~~iel~gIt~v~GN~~~~~~~~n~~~~l~~~g~~~iPV~~   62 (302)
T cd02651           9 GHDDAVAILLALF-----H--PELDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAA   62 (302)
T ss_pred             CHHHHHHHHHHHH-----C--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             6799999999977-----8--9986999997978868999999999999984899998763


No 177
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=34.30  E-value=28  Score=13.97  Aligned_cols=42  Identities=12%  Similarity=0.091  Sum_probs=30.3

Q ss_pred             ECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             101210428999998998189320266786422101899976
Q gi|254780546|r  166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF  207 (423)
Q Consensus       166 ~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~  207 (423)
                      ..=.-.++.+||.+-..++.-.|--+|+..+....+--+|.+
T Consensus       209 v~~v~~Vsd~ei~al~~ey~~~Y~~~~~~~~~~~~~~~l~~a  250 (484)
T cd03557         209 VARVDAVSDSDVDALVDEYEALYDLAPELKDGGERRASLREA  250 (484)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             999985899999999999986046472224745789999999


No 178
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.80  E-value=28  Score=13.92  Aligned_cols=50  Identities=16%  Similarity=0.099  Sum_probs=31.4

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC--CCCCEEEEEEE
Q ss_conf             9999999852799839999669424899999999999864--89972999999
Q gi|254780546|r    7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR--SFGKIKFSAIS   57 (423)
Q Consensus         7 ~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~--~~~~~~l~a~~   57 (423)
                      +++....+.+..+.+|.++=-||+-+.| -|++.++..+-  ..+++...+++
T Consensus        32 ~aa~~i~~~~~~g~kI~~cGNGGSaa~A-~Hfa~dl~~~~~~~r~~l~ai~Ls   83 (192)
T PRK00414         32 RAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRYRENRPGYPAIAIS   83 (192)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHCCCCCCCCCCCEEECC
T ss_conf             9999999999879979999685889999-999998746314466654325327


No 179
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=33.64  E-value=28  Score=13.90  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=15.6

Q ss_pred             HHHHHHHHHC-----CCCCEEEEEECCCHH
Q ss_conf             9999999852-----799839999669424
Q gi|254780546|r    7 ESVRFFVRSL-----VYPAHILVAVSGGSD   31 (423)
Q Consensus         7 ~~~~~~~~~l-----~~~~~i~vAvSGG~D   31 (423)
                      .+.++|++.-     .+-.+|+||+|||.=
T Consensus        24 ~aL~~~L~~~~~~~~~~~P~Iaia~SGGGy   53 (438)
T cd00147          24 KALKKFLGLENDLNPDEVPVIAILGSGGGY   53 (438)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf             999999734046886558758998458548


No 180
>PTZ00249 variable surface protein Vir28; Provisional
Probab=33.56  E-value=25  Score=14.25  Aligned_cols=14  Identities=14%  Similarity=0.102  Sum_probs=5.6

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             93202667864221
Q gi|254780546|r  186 ISWCEDPSNTDDRF  199 (423)
Q Consensus       186 i~wveDpSN~d~~f  199 (423)
                      +....|+++....+
T Consensus       147 lk~~~~~~~~C~~i  160 (516)
T PTZ00249        147 LKESKDSSTLCRNI  160 (516)
T ss_pred             CCCCCCCCCCCCCH
T ss_conf             05666677742109


No 181
>pfam10829 DUF2554 Protein of unknown function (DUF2554). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=33.55  E-value=28  Score=13.89  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=16.6

Q ss_pred             EEEEEEECCCCCCCHHHH-HHHHHH
Q ss_conf             999999667798784689-999999
Q gi|254780546|r   52 KFSAISVDHCLRETAKDE-VRYVSD   75 (423)
Q Consensus        52 ~l~a~~vdHglr~~s~~e-~~~v~~   75 (423)
                      -+.+-++||+||.+++-+ ..-+..
T Consensus        29 ~lwvk~~dhqLrHeADSDELR~~aE   53 (76)
T pfam10829        29 FVWVKNVDHQLRHEADSDELRAVAE   53 (76)
T ss_pred             EEEECCHHHHHHHCCCHHHHHHHHH
T ss_conf             6865151288773026199999999


No 182
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=33.49  E-value=28  Score=13.88  Aligned_cols=74  Identities=8%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCCHHH-HHHHH-HHHHHHCCCCEE
Q ss_conf             9985279983999966942489999999999986489972999999667--79878468-99999-999987189889
Q gi|254780546|r   12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKD-EVRYV-SDVCSRLRIAHS   85 (423)
Q Consensus        12 ~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH--glr~~s~~-e~~~v-~~~~~~lgi~~~   85 (423)
                      ....+..+.+..+|+|||.-=..+...|.+........--+++.+++|-  |+.++... -..+. +.+...++|+-.
T Consensus        20 i~~~i~~k~~~~l~latG~TP~~~Y~~L~~~~~~~~l~~~~v~~f~lDEy~glp~~~~~S~~~~l~~~l~~~v~i~~~   97 (236)
T PRK09762         20 LLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLRED   97 (236)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECEEECCCCCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             999998789929995898898999999999997179984668999252754888986042899999972454699799


No 183
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=33.41  E-value=28  Score=13.87  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999852799839999669424899999999999864899729999996677987846899999999987
Q gi|254780546|r   10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR   79 (423)
Q Consensus        10 ~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~   79 (423)
                      ......+....+..+|+|||+==..+...|.+..+.. .+--+++.++.|- +-...++....+..+.++
T Consensus        18 ~~i~~~i~~~~~~~l~LatGsTP~~~y~~L~~~~~~~-~~~~~v~~f~lDE-~~~~~~~~~~~~~~~l~~   85 (239)
T PRK12358         18 HHLLGYMSKTKRVNLAITAGSTPKGMYEYLTTLVKGK-AWYDNCHYYNFDE-IPFRGKEGEGVTITNLRN   85 (239)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEEEE-ECCCCCCCHHHHHHHHHH
T ss_conf             9999999748994899799879899999999996257-8842179996105-558985553569999999


No 184
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=33.13  E-value=29  Score=13.84  Aligned_cols=91  Identities=10%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCHHHH-HH-HHHHHHHHCCCCEEEE-EEEC
Q ss_conf             799839999669424899999999999864899729999996677--98784689-99-9999998718988999-9750
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKDE-VR-YVSDVCSRLRIAHSVV-SWKN   91 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg--lr~~s~~e-~~-~v~~~~~~lgi~~~~~-~~~~   91 (423)
                      .....+.||+|||.==..+...|.+........--+++.+++|--  +.++..+- .. .-+.+...++||..-+ ..+.
T Consensus        30 ~~~~~~~i~LsgG~tP~~~y~~L~~~~~~~~i~~~~v~~f~~DEy~gl~~~~~~S~~~~~~~~l~~~v~ip~~~i~~~~~  109 (253)
T PTZ00285         30 TSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVDIKEENRHILNG  109 (253)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEECCCC
T ss_conf             03998299969983499999999999861599857959973632227898884549999999987417997998777899


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q ss_conf             47877803788854555543
Q gi|254780546|r   92 SKPQTGLMAAAREARYALIS  111 (423)
Q Consensus        92 ~~~~~~~~~~ar~~r~~~~~  111 (423)
                        ...+.++.|  .+|....
T Consensus       110 --~~~d~~~~~--~~ye~~i  125 (253)
T PTZ00285        110 --TAPDLEEEC--RRYEEKI  125 (253)
T ss_pred             --CCCCHHHHH--HHHHHHH
T ss_conf             --987999999--9999999


No 185
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=33.10  E-value=29  Score=13.84  Aligned_cols=34  Identities=9%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             EEEEEEECCCCCCCH---HHHHHHHHHHHHHCCCCEE
Q ss_conf             999999667798784---6899999999987189889
Q gi|254780546|r   52 KFSAISVDHCLRETA---KDEVRYVSDVCSRLRIAHS   85 (423)
Q Consensus        52 ~l~a~~vdHglr~~s---~~e~~~v~~~~~~lgi~~~   85 (423)
                      +-.++++||..-..+   .+...+++++|+++||.++
T Consensus        27 ~~~~~~~DH~~p~~~~~~~~~~~~~~~~a~~~gi~~~   63 (363)
T cd01582          27 DQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGIDFY   63 (363)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             8778971889999973409999999999998299766


No 186
>TIGR00269 TIGR00269 conserved hypothetical protein TIGR00269; InterPro: IPR000541 The following uncharacterised proteins have been shown to share regions of similarities, yeast chromosome VII hypothetical protein YGL211w; Dictyostelium discoideum (Slime mold) protein veg136; and Methanococcus jannaschii hypothetical proteins MJ1157 and MJ1478..
Probab=32.82  E-value=11  Score=16.67  Aligned_cols=50  Identities=16%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             EECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             71012104289999989981893202667864221018999764345310
Q gi|254780546|r  165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH  214 (423)
Q Consensus       165 i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~  214 (423)
                      -|.||=.++.+|+.=|+..+++++--|+.--..---|.++|.+|..+.++
T Consensus         3 rIKPL~~iPE~EV~lY~~~~~l~~~~~~CPYS~~S~R~~~~dfL~~le~~   52 (106)
T TIGR00269         3 RIKPLREIPEKEVKLYALLNELKVHLDECPYSSLSVRARIRDFLKDLEEK   52 (106)
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             44688656711044554430451031688889840358899999986303


No 187
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II  (metal dependent) aldolase subfamilies.
Probab=32.71  E-value=29  Score=13.80  Aligned_cols=40  Identities=10%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             EEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             29999996677987846--89999999998718988999975
Q gi|254780546|r   51 IKFSAISVDHCLRETAK--DEVRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        51 ~~l~a~~vdHglr~~s~--~e~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      ..-+.+||+.|...|..  ++...+.+.|.++|+|..+..+.
T Consensus        90 AdaV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~yp  131 (235)
T cd00958          90 ADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP  131 (235)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             567999986898168999999999999999839978999741


No 188
>pfam01890 CbiG_C Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. A member from Synechocystis sp. PCC 6803 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.
Probab=31.81  E-value=30  Score=13.70  Aligned_cols=67  Identities=10%  Similarity=0.152  Sum_probs=47.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             399996694248999999999998648997299-9999667798784689999999998718988999975047
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l-~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      -++|++.-|.+.-.+..++.+...+.......+ ...++|-.      .+..-..++|+.+|+|+.....+..+
T Consensus         3 v~GiGcrrg~~~~~i~~~i~~~l~~~~l~~~~i~~iasid~K------~~E~gl~~~a~~l~~pl~~~~~e~L~   70 (121)
T pfam01890         3 VLGIGCRRGTSAEEIEAAIEEALAEAGLSPEAVAAIATIDLK------ADEPGLLELAARLGVPLRFFSAEELA   70 (121)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEEECC------CCCHHHHHHHHHHCCCEEEECHHHHH
T ss_conf             998363899799999999999999859997884056863214------79889999999929986997899996


No 189
>PRK08813 threonine dehydratase; Provisional
Probab=31.19  E-value=31  Score=13.63  Aligned_cols=23  Identities=13%  Similarity=0.276  Sum_probs=18.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             83999966942489999999999
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSV   42 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~   42 (423)
                      .+=+|+.|.|--..++++.++.+
T Consensus        81 ~~GVV~aSaGNHaqavA~aA~~~  103 (349)
T PRK08813         81 ERPVICASAGNHAQGVAWSAYRL  103 (349)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC
T ss_conf             78679988648999999999986


No 190
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=30.83  E-value=31  Score=13.59  Aligned_cols=71  Identities=13%  Similarity=0.084  Sum_probs=35.4

Q ss_pred             CCCCEEEEEECCC-HH------------------HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHH----H
Q ss_conf             7998399996694-24------------------89999999999986489972999999667798784689999----9
Q gi|254780546|r   17 VYPAHILVAVSGG-SD------------------SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----V   73 (423)
Q Consensus        17 ~~~~~i~vAvSGG-~D------------------S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~----v   73 (423)
                      ...+.|+|.+|=| ..                  ..+++..++.+....+.|    +++|.|||-... -+|...    .
T Consensus        43 e~~sPvIiq~S~g~~~y~~G~~v~~~~~~~~v~gai~~a~~v~~~A~~~~VP----VaLHLDH~~~~~-l~~i~~~i~~~  117 (349)
T PRK09197         43 KAKSPVIIQFSNGGAAFIAGKGVKDDVPGAAVLGAIAGAKHVHQVAEHYGVP----VILHTDHCAKKL-LPWIDGLLDAG  117 (349)
T ss_pred             HHCCCEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEECCCCCCCC-CHHHHHHHHHH
T ss_conf             9788999991603566615755321005677664899999999999867998----899788887533-01678999998


Q ss_pred             HHHHHHCCCC-EEEEEEECC
Q ss_conf             9999871898-899997504
Q gi|254780546|r   74 SDVCSRLRIA-HSVVSWKNS   92 (423)
Q Consensus        74 ~~~~~~lgi~-~~~~~~~~~   92 (423)
                      .+.+..-+-+ |.++=+|..
T Consensus       118 ~~~~~~g~~~~FtSVMiDgS  137 (349)
T PRK09197        118 EKHFAAGGKPLFSSHMIDLS  137 (349)
T ss_pred             HHHHHHCCCCCCCCCEECCC
T ss_conf             99998536667864233185


No 191
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=30.64  E-value=32  Score=13.57  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99999985279983999966942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r    8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus         8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      +++...+....|+.|-+ +-||--++-|++.+.++       ..=+.+=.||.|..|+                   ++.
T Consensus        25 ~v~~L~~~~~~p~~V~l-iDGGT~G~~Ll~~le~~-------d~LIvvDAV~~g~~PG-------------------tv~   77 (195)
T PRK10264         25 VAERLYAHYHWPEEVEI-VDGGTQGLNLLGYVESA-------SHLLILDAIDYGLEPG-------------------TLR   77 (195)
T ss_pred             HHHHHHHHCCCCCCCEE-EECCCCHHHHHHHHHCC-------CEEEEEECCCCCCCCC-------------------EEE
T ss_conf             99999985689988289-84453199999998429-------9799984653799997-------------------599


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             97504787780378885455554320012344201234566656689999862365444332235764100357968710
Q gi|254780546|r   88 SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~R  167 (423)
                      +++.+.-    ..               ..+  .-..--|+-.-.|+..+--+.|.-+.-..+.|+.|......++-+ +
T Consensus        78 ~~~~dev----p~---------------~~~--~~kmS~Hqvgl~evL~~a~L~G~~P~~~~LiGvqP~~le~~g~~L-t  135 (195)
T PRK10264         78 TYAGERI----PA---------------YLS--AKKMSLHQNSFSEVLALADIRGHLPAHIALVGLQPAMLDDYGGSL-S  135 (195)
T ss_pred             EEECCCC----CH---------------HHC--CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCCC-C
T ss_conf             9714304----21---------------217--577786404799999999954999874999843102330578988-9


Q ss_pred             CH----HCCCHHHHHHHHHHHCCCCCC--------CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             12----104289999989981893202--------667864221018999764345
Q gi|254780546|r  168 PF----LRCRREDIRSFLLQRNISWCE--------DPSNTDDRFERVRVRRFVRDI  211 (423)
Q Consensus       168 PL----L~~~r~~l~~~~~~~~i~wve--------DpSN~d~~f~R~rlR~~l~~l  211 (423)
                      |-    +.---+.+.+.+++.|+.-.-        +++=.-.+|+..|+|+.-..+
T Consensus       136 p~V~a~ip~av~~~l~~L~~wGv~~~p~~~~~~l~~~~l~~~~ye~~r~~~~~~~~  191 (195)
T PRK10264        136 ELAREQLPAAEQAALAQLAAWGIVPQPANESRCLNYDCLSMENYEGVRLRQYRMRL  191 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEC
T ss_conf             89998669999999999998099876677444544777778766467688774010


No 192
>PRK00955 hypothetical protein; Provisional
Probab=30.43  E-value=32  Score=13.54  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             CCCEEEEEECCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCCC
Q ss_conf             998399996694-248999999999998648997299999966779878468999999999871--89889999750478
Q gi|254780546|r   18 YPAHILVAVSGG-SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--RIAHSVVSWKNSKP   94 (423)
Q Consensus        18 ~~~~i~vAvSGG-~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~l--gi~~~~~~~~~~~~   94 (423)
                      +..|+..+||+| .|||+-=+-+..  +.+..   .-+-=-=-+|.||+-+- ..++ +.+++.  ++|..+        
T Consensus        64 G~PrLffgVsaGn~DSMVn~YTa~k--K~R~~---DaYtPgG~~g~RPDRA~-ivYt-n~ir~~f~~vPiii--------  128 (599)
T PRK00955         64 GKPRLFFLVSAGNMDSMVNHYTAAK--KLRSK---DAYSPGGKSGLRPDRAT-IVYC-NKIKEAYPDVPIII--------  128 (599)
T ss_pred             CCCCEEEEECCCCHHHHHHHCCCCC--CCCCC---CCCCCCCCCCCCCCCHH-HHHH-HHHHHHCCCCCEEE--------
T ss_conf             8985787764654878887505544--54554---58797997888988036-7999-99999779999896--------


Q ss_pred             CCCCHHHHHH-HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7780378885-45555432001-----234420123456665668999986236
Q gi|254780546|r   95 QTGLMAAARE-ARYALISEHAK-----TINATLIMTAHTFDDQLETVYMRSQRD  142 (423)
Q Consensus        95 ~~~~~~~ar~-~r~~~~~~~~~-----~~~~~~l~~ah~~dD~~Et~l~rl~r~  142 (423)
                       ++||+.-|+ +-|.+..+..+     ..+++.++.|---. ++-.+.-++..|
T Consensus       129 -GGIEASLRR~aHYDyWsdkvRrSIL~DskADlLvYGMgE~-~i~eiA~~L~~G  180 (599)
T PRK00955        129 -GGIEASLRRFAHYDYWSDKVRRSILLDSGADLLIYGMGEK-PIVEIARRLKSG  180 (599)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHH-HHHHHHHHHHCC
T ss_conf             -2247877766554566654213321167888776446278-999999999779


No 193
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.97  E-value=32  Score=13.49  Aligned_cols=34  Identities=15%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9999899818932026678642210189997643
Q gi|254780546|r  176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR  209 (423)
Q Consensus       176 ~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~  209 (423)
                      ++-.-+..+++.|+|||-+.++--.-.++|+.+.
T Consensus       223 ~~~~~le~~~l~w~EeP~~~~d~~~~a~l~~~~~  256 (385)
T cd03326         223 AYAKALAPYGLRWYEEPGDPLDYALQAELADHYD  256 (385)
T ss_pred             HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCC
T ss_conf             9999855329918978899558999999996389


No 194
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.97  E-value=32  Score=13.49  Aligned_cols=81  Identities=9%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH-----------HHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             999966942489999999999986489972999999667798784-----------689999999998718988999975
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----------KDEVRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s-----------~~e~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      |.|..=.-+-++.---+.....  -..|+.++++...|-|-..+.           ...-..++++|+++|+.+....-.
T Consensus       135 V~IPtYNEp~~vv~~Tl~aa~~--ldYP~~kl~V~vLDDG~td~~~~~~~~~~~~~~~rR~e~~~la~~lGv~YitR~~n  212 (713)
T TIGR03030       135 VFIPTYNEDLEIVATTVLAAKN--MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRN  212 (713)
T ss_pred             EEECCCCCCHHHHHHHHHHHHH--CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf             8964899998999999999986--89998546699997989710023430123333441399999999809865537987


Q ss_pred             CCCCCCCCHHHHHH
Q ss_conf             04787780378885
Q gi|254780546|r   91 NSKPQTGLMAAARE  104 (423)
Q Consensus        91 ~~~~~~~~~~~ar~  104 (423)
                      .-.+.+|+..+-..
T Consensus       213 ~hAKAGNLN~AL~~  226 (713)
T TIGR03030       213 VHAKAGNINNALKH  226 (713)
T ss_pred             CCCCCHHHHHHHHH
T ss_conf             88761678999873


No 195
>PRK05634 nucleosidase; Provisional
Probab=29.80  E-value=33  Score=13.47  Aligned_cols=27  Identities=7%  Similarity=0.069  Sum_probs=17.4

Q ss_pred             HHCCCHHHHHHHHHHHCCCC-----CCCCCCC
Q ss_conf             21042899999899818932-----0266786
Q gi|254780546|r  169 FLRCRREDIRSFLLQRNISW-----CEDPSNT  195 (423)
Q Consensus       169 LL~~~r~~l~~~~~~~~i~w-----veDpSN~  195 (423)
                      +.+.--..|-..|..+|+||     |.|--|.
T Consensus       132 ~VDME~~AiA~vc~~~~vPf~~~K~ISD~Ade  163 (188)
T PRK05634        132 LCDMEGAAVVGVAKHFGIPVTLLKQVSDSADE  163 (188)
T ss_pred             EEEEHHHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf             88405889999999829988999997017887


No 196
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=29.69  E-value=33  Score=13.46  Aligned_cols=37  Identities=30%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             EEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf             996694248--999999999998648997299999966779
Q gi|254780546|r   24 VAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCL   62 (423)
Q Consensus        24 vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl   62 (423)
                      |.+-|.+||  +.|+..+..++.+.+..  -+..+|.|||-
T Consensus         3 v~i~G~~~sGKttl~~~L~~~~~~~g~~--~~~~~~~d~gq   41 (122)
T pfam03205         3 VLVVGPKDSGKTTLIRKLLNYLKRRGYR--VAVVKHLDHGQ   41 (122)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCC
T ss_conf             9999489998999999999999987994--48999899998


No 197
>PRK07008 acyl-CoA synthetase; Validated
Probab=29.44  E-value=33  Score=13.43  Aligned_cols=47  Identities=4%  Similarity=-0.057  Sum_probs=31.3

Q ss_pred             HHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf             999998--52799839999669424899999999999864899729999996677987
Q gi|254780546|r    9 VRFFVR--SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE   64 (423)
Q Consensus         9 ~~~~~~--~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~   64 (423)
                      +...|.  .+.++++|+|-..=+.+..++.+.+...         ..+++.+|..+.+
T Consensus        52 lA~~L~~~Gv~~GdrVai~~~n~~e~~~~~~a~~~~---------Gav~vpl~~~~~~  100 (539)
T PRK07008         52 LAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS---------GAVCHTINPRLFP  100 (539)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHH---------CEEEEEECCCCCH
T ss_conf             999999769688699999878879999999999984---------9699844899999


No 198
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=29.37  E-value=12  Score=16.56  Aligned_cols=127  Identities=15%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99966779878468999999999871898899997504787780378885455554320012344201234566656689
Q gi|254780546|r   55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET  134 (423)
Q Consensus        55 a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et  134 (423)
                      .+.|-.-|.- +.-|....-++|+.-|.+- |-|++            |..||.+...+.-...-...+.+.-.|-=.|+
T Consensus        87 l~~V~PRlgt-~spWSska~~i~~~cGL~~-v~RiE------------Rg~ry~l~~~~~l~~~~~~~~aa~LHDRMTe~  152 (1401)
T TIGR01735        87 LLLVGPRLGT-ISPWSSKATSIARNCGLAK-VDRIE------------RGRRYYLEGKEPLSEEQIAQLAALLHDRMTES  152 (1401)
T ss_pred             EEEECCCCCC-CCCCHHHHHHHHHHCCCCC-CCEEE------------CCEEEEEECCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             7785277876-4851656899997268885-22665------------11578863057857889999998617812354


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999862365444332235764100357968710121042899999899818932026678642210189997643
Q gi|254780546|r  135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR  209 (423)
Q Consensus       135 ~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~  209 (423)
                      ++-......-..     .++ ......  .  =++|+--|+.|++.-.+.||..-+|    |..|-+-+-|+.|.
T Consensus       153 vl~~~~~~~~lf-----~~~-Ep~~l~--~--v~vl~~GR~ALE~AN~elGLAL~~d----e~DYl~~~fr~~L~  213 (1401)
T TIGR01735       153 VLPHEEEAFELF-----SVP-EPLKLT--T--VDVLGGGRKALEKANQELGLALDED----EIDYLTKRFRQELK  213 (1401)
T ss_pred             HCCCHHHHHCCC-----CCC-CCCCCC--C--CCHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHC
T ss_conf             346434542011-----325-665775--0--0112444899999989853045756----88999999999837


No 199
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.28  E-value=33  Score=13.41  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             999989981893202667864221018999764
Q gi|254780546|r  176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV  208 (423)
Q Consensus       176 ~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l  208 (423)
                      ++-.-+..+++.|+|||.+.|.-..-.++|+.+
T Consensus       258 ~~~~~le~~~~~w~EEP~~p~d~~~~~~l~~~~  290 (415)
T cd03324         258 EWVKQLAEFKPWWIEEPTSPDDILGHAAIRKAL  290 (415)
T ss_pred             HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf             999875224977898899955778999999873


No 200
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=28.44  E-value=34  Score=13.31  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=20.4

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99989981893202667864221018999764
Q gi|254780546|r  177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV  208 (423)
Q Consensus       177 l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l  208 (423)
                      +-..+.++++.|+|||-+.++--.=.++|+..
T Consensus       148 ~~~~l~~~~i~w~EeP~~~~d~~~~~~L~~~~  179 (265)
T cd03315         148 ALRALEDLGLDYVEQPLPADDLEGRAALARAT  179 (265)
T ss_pred             HHHHHCCCCCEEEECCCCCCCHHHHHHHHHCC
T ss_conf             99864005854884789989999999998519


No 201
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR; InterPro: IPR014160   The members of this entry from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterised nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologues, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologues not in this entry have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel..
Probab=28.42  E-value=30  Score=13.75  Aligned_cols=21  Identities=0%  Similarity=-0.146  Sum_probs=16.2

Q ss_pred             HHHCCCCCCCHHHHHHHHHHH
Q ss_conf             983589999889999999998
Q gi|254780546|r  274 ICGGQISLPGYRSMERVMLFL  294 (423)
Q Consensus       274 ~~~g~~~~p~~~~l~~ll~~l  294 (423)
                      .+.-+.|.=|.+.+.+|++.-
T Consensus        18 ~~~~~GYqnRSEAiRDLlR~G   38 (130)
T TIGR02793        18 LIATRGYQNRSEAIRDLLRAG   38 (130)
T ss_pred             HHHHCCCCCHHHHHHHHHHHH
T ss_conf             987308898017999999988


No 202
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=28.05  E-value=35  Score=13.27  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCH-----HCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             420123456665668999986236544433223576410035796871012-----104289999989981893202667
Q gi|254780546|r  119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF-----LRCRREDIRSFLLQRNISWCEDPS  193 (423)
Q Consensus       119 ~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPL-----L~~~r~~l~~~~~~~~i~wveDpS  193 (423)
                      |-.|=||++.-|..||+.--+.-|.-+--.|     |..      +-..|+     +.++-+||.+..+..|...+...+
T Consensus       171 ~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G-----PLl------yh~~~~~~~~siELs~eEi~~l~~~~GF~~~~~~~  239 (268)
T pfam07942       171 CFFIDTAHNVLEYIDTIEKILKPGGHWINLG-----PLL------YHFEPLPDEMSIELSLEDIKRLATKRGFKDEKEET  239 (268)
T ss_pred             EEEEECHHHHHHHHHHHHHHHCCCCEEEECC-----CCC------CCCCCCCCCCCEECCHHHHHHHHHHCCCEEEEEEE
T ss_conf             9876646889999999999836698899646-----701------24577788760006899999999856977998883


Q ss_pred             CCCCCCCHHH
Q ss_conf             8642210189
Q gi|254780546|r  194 NTDDRFERVR  203 (423)
Q Consensus       194 N~d~~f~R~r  203 (423)
                      ..+..|..|.
T Consensus       240 ~i~~~Y~~d~  249 (268)
T pfam07942       240 GILNGYTTNY  249 (268)
T ss_pred             ECCCCCCCCH
T ss_conf             0246775798


No 203
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.81  E-value=35  Score=13.24  Aligned_cols=21  Identities=14%  Similarity=0.128  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEEE
Q ss_conf             999999998718988999975
Q gi|254780546|r   70 VRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        70 ~~~v~~~~~~lgi~~~~~~~~   90 (423)
                      ...+..+++.+|+......-+
T Consensus        47 ~~~a~~i~~~~~~~~~~~~~d   67 (279)
T PRK08385         47 VEEARALFEHFGVAVEVKKRD   67 (279)
T ss_pred             HHHHHHHHHHCCCEEEEECCC
T ss_conf             999999999749889999288


No 204
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.40  E-value=36  Score=13.19  Aligned_cols=69  Identities=13%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             839999669424899999999999864899729999996677-----------987846899999999987189889999
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----------LRETAKDEVRYVSDVCSRLRIAHSVVS   88 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-----------lr~~s~~e~~~v~~~~~~lgi~~~~~~   88 (423)
                      -+|++.||+|.-|+-|..-.......++ ....+.|+..+-.           |-|+-..-...+++.+...|||..++.
T Consensus         2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg-~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~   80 (102)
T COG1440           2 KKILLVCAAGMSTSLLVTKMKKAAESKG-KDVTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVID   80 (102)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             4499984588748899999999999579-965999810657887663089899872899889999998431599767857


Q ss_pred             E
Q ss_conf             7
Q gi|254780546|r   89 W   89 (423)
Q Consensus        89 ~   89 (423)
                      -
T Consensus        81 ~   81 (102)
T COG1440          81 M   81 (102)
T ss_pred             H
T ss_conf             8


No 205
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=27.31  E-value=36  Score=13.18  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             HHHHHHCCCCEEEEE------------EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH------------HH
Q ss_conf             999987189889999------------750478778037888545555432001234420123456------------66
Q gi|254780546|r   74 SDVCSRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT------------FD  129 (423)
Q Consensus        74 ~~~~~~lgi~~~~~~------------~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~------------~d  129 (423)
                      .+.|++||+|+.+-.            ++..+.++++.+.-|..-.+.+.+ ......+..--||-            ..
T Consensus        62 ~e~~~~L~Lp~Mv~~n~~~~~taFtVsVd~~~t~TGISa~DRa~TIr~l~~-~~~~~~df~~PGHVfpL~A~~ggVl~R~  140 (203)
T COG0108          62 EERAKRLGLPPMVDNNTDAHGTAFTVSVDARETTTGISAADRALTIRALAD-PGAKPSDFRRPGHVFPLRAKDGGVLERR  140 (203)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC-CCCCHHHCCCCCCEEEEEECCCCEECCC
T ss_conf             999985799500246888888764999804237688588899999999865-7888888489997003650668763148


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             5668999986236544433223576410035796871012104289999989981893202
Q gi|254780546|r  130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE  190 (423)
Q Consensus       130 D~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wve  190 (423)
                      -|.| -..-|.+..|...-+  .+.+....  ++.      -.++.++..|++++|+++++
T Consensus       141 GHTE-asVdLarlAGl~Pa~--VicEi~~~--dG~------mar~~~~~~fa~~h~l~~it  190 (203)
T COG0108         141 GHTE-AAVDLARLAGLKPAG--VICEIMND--DGT------MARLPELEEFAKEHGLPVIT  190 (203)
T ss_pred             CHHH-HHHHHHHHCCCCCCE--EEEEEECC--CCC------CCCHHHHHHHHHHCCCCEEE
T ss_conf             8079-999999983999737--99998679--866------15738999999983996888


No 206
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=27.25  E-value=36  Score=13.17  Aligned_cols=72  Identities=14%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH-HHHHHHHHCCCCEE
Q ss_conf             99999998527998399996694248999999999998648997299999966779878468999-99999987189889
Q gi|254780546|r    7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRLRIAHS   85 (423)
Q Consensus         7 ~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~-~v~~~~~~lgi~~~   85 (423)
                      +.|+-+.+.+..|+..++-.|||..|.-+...+.+  ......+.++++-        ++   ++ -+.+.|.=+|++..
T Consensus        67 ~vv~~~a~l~g~p~~~G~~tsGGTes~l~Al~aaR--~~~~~~~p~iv~~--------~~---aH~s~~Kaa~~~gi~~~  133 (375)
T PRK13520         67 EVVRMLGELLHLPDAYGYITSGGTEANIQAVRAAR--NLADAEKPNIVVP--------ES---AHFSFDKAADMLGLELR  133 (375)
T ss_pred             HHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHH--HHCCCCCCEEEEE--------CC---CHHHHHHHHHHCCCEEE
T ss_conf             99999999809998808995618999999999997--6268999879996--------73---16999999997495569


Q ss_pred             EEEEEC
Q ss_conf             999750
Q gi|254780546|r   86 VVSWKN   91 (423)
Q Consensus        86 ~~~~~~   91 (423)
                      .+..+.
T Consensus       134 ~vp~d~  139 (375)
T PRK13520        134 RAPLDE  139 (375)
T ss_pred             EEEECC
T ss_conf             940388


No 207
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=27.12  E-value=36  Score=13.15  Aligned_cols=98  Identities=13%  Similarity=0.094  Sum_probs=47.2

Q ss_pred             HHHHHHHHHC-CCCCEEEEEECCCHH----HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999999852-799839999669424----89999999999986489972999999667798784689999999998718
Q gi|254780546|r    7 ESVRFFVRSL-VYPAHILVAVSGGSD----SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR   81 (423)
Q Consensus         7 ~~~~~~~~~l-~~~~~i~vAvSGG~D----S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg   81 (423)
                      +.++..+..- ...+.|++.+|-|.=    --.+..++..+......|    +++|.|||...+       .-..|-+.|
T Consensus        27 e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VP----V~lHLDH~~~~e-------~~~~ai~~G   95 (283)
T pfam01116        27 ETINAVLEAAEEANSPVIIQVSPGAAKYAGAEALAAMVRAAAEKYSVP----VALHLDHGASFE-------GILEAIEAG   95 (283)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCC----EEEECCCCCCHH-------HHHHHHHHC
T ss_conf             999999999999699999996844675589999999999999977998----999667779999-------999999819


Q ss_pred             CCEEEEEEECC--CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             98899997504--7877803788854555543200123
Q gi|254780546|r   82 IAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTI  117 (423)
Q Consensus        82 i~~~~~~~~~~--~~~~~~~~~ar~~r~~~~~~~~~~~  117 (423)
                      +.  .+=+|..  .-..|+....+...|..-....-+.
T Consensus        96 ft--SVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEa  131 (283)
T pfam01116        96 FS--SVMIDGSHLPFEENIAITKEVVEYAHARGVSVEA  131 (283)
T ss_pred             CC--EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             98--6986389799999999999999999873984899


No 208
>PRK12678 transcription termination factor Rho; Provisional
Probab=27.09  E-value=24  Score=14.43  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=25.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             9999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI   82 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi   82 (423)
                      ..-+-+||..+|.|.-| +++++..+..+.        -+||+     .+.+..+++.-+-
T Consensus        15 ~~~~~~~~L~~mkLpEL-q~lA~~lGIkG~--------s~lRK-----~dLI~aI~e~q~~   61 (667)
T PRK12678         15 AARARSGGLAGMVLPEL-RALAKQLGIKGT--------SGMRK-----GELIAAIKEARGA   61 (667)
T ss_pred             CCCCCCCCHHHHHHHHH-HHHHHHCCCCCC--------CCCCH-----HHHHHHHHHHHCC
T ss_conf             46666787143226999-999998599764--------55788-----9999999997457


No 209
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=26.95  E-value=36  Score=13.13  Aligned_cols=72  Identities=11%  Similarity=0.133  Sum_probs=47.0

Q ss_pred             HHHHHHHHHCCCCC------EEEEE---ECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99999998527998------39999---6694248999999999998648997299999966779878468999999999
Q gi|254780546|r    7 ESVRFFVRSLVYPA------HILVA---VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC   77 (423)
Q Consensus         7 ~~~~~~~~~l~~~~------~i~vA---vSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~   77 (423)
                      .+.+..+..++...      ++..-   +.- .||-.+-..++++..+      .|.|+-     -|-+..-+..++.+|
T Consensus        15 ~aF~~Av~~~N~~~~~l~~~~l~~~i~~v~~-~dsF~~~~~~C~l~~~------GV~Aif-----Gp~~~~s~~~vqSic   82 (363)
T cd06381          15 EVFAVAVIDLNINEQILQTEKITLSISFIDL-NNHFDAVQEACDLMNQ------GILALV-----TSTGCASAIALQSLT   82 (363)
T ss_pred             HHHHHHHHHHCCCHHHCCCCCCEEEEEECCC-CCCHHHHHHHHHHHHC------CCEEEE-----CCCCHHHHHHHHHHH
T ss_conf             9999999985458022356752468887589-9978999999998744------816998-----788666899999875


Q ss_pred             HHCCCCEEEEEEE
Q ss_conf             8718988999975
Q gi|254780546|r   78 SRLRIAHSVVSWK   90 (423)
Q Consensus        78 ~~lgi~~~~~~~~   90 (423)
                      ..+.|||...+++
T Consensus        83 ~al~iPhi~~~~~   95 (363)
T cd06381          83 DAMHIPHLFIQRG   95 (363)
T ss_pred             CCCCCCCEEEECC
T ss_conf             1578872786326


No 210
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.57  E-value=37  Score=13.09  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=12.9

Q ss_pred             CCCCCE-EEEEECCCHHHHHHHHHHH
Q ss_conf             279983-9999669424899999999
Q gi|254780546|r   16 LVYPAH-ILVAVSGGSDSMGLLIALH   40 (423)
Q Consensus        16 l~~~~~-i~vAvSGG~DS~aLl~ll~   40 (423)
                      +.+++- .+++-||-.-|+. +.++.
T Consensus        21 i~~Ge~~~ilGpSGsGKSTL-l~li~   45 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTL-LNLIA   45 (211)
T ss_pred             ECCCCEEEEECCCCCHHHHH-HHHHH
T ss_conf             88998999999999559999-99997


No 211
>KOG1907 consensus
Probab=26.53  E-value=23  Score=14.54  Aligned_cols=17  Identities=29%  Similarity=0.694  Sum_probs=14.3

Q ss_pred             EEEEEECCCHHHHHHHH
Q ss_conf             39999669424899999
Q gi|254780546|r   21 HILVAVSGGSDSMGLLI   37 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~   37 (423)
                      .+.||.-||+|||.|..
T Consensus       784 eLgiAIdgGKDSlSMa~  800 (1320)
T KOG1907         784 ELGIAIDGGKDSLSMAM  800 (1320)
T ss_pred             HHCEEECCCCCCHHHHE
T ss_conf             81531037852011000


No 212
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=26.37  E-value=37  Score=13.06  Aligned_cols=61  Identities=15%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCCEEECCC
Q ss_conf             58999988999999999866998456107579998899899984534377552368982320784
Q gi|254780546|r  277 GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR  341 (423)
Q Consensus       277 g~~~~p~~~~l~~ll~~l~~~~~~~~tl~g~~i~~~~~~l~i~RE~~~~~~~~~~~~~~~~wDgR  341 (423)
                      |.+..|. .....+.+.........+++-|-++++-++..|++|....-....+.   .-+|+|+
T Consensus        36 gGf~Gp~-~~~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D~y~FrD~sGeI~VeId---d~~w~g~   96 (128)
T COG3111          36 GGFQGPN-AKVTTVDQAKTLHDDAWVSLEGNIVRQIGDDRYVFRDASGEINVDID---DKVWNGQ   96 (128)
T ss_pred             CCCCCCC-CCEEEHHHHHCCCCCCEEEEEEEEEEEECCCEEEEECCCCCEEEEEC---CCCCCCC
T ss_conf             7621788-54268987533025984999756777607836999758961999816---0113897


No 213
>pfam01156 IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase.
Probab=26.10  E-value=38  Score=13.03  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             3999966942-4899999999999864899729999996677987846899999999987189
Q gi|254780546|r   21 HILVAVSGGS-DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI   82 (423)
Q Consensus        21 ~i~vAvSGG~-DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi   82 (423)
                      ||++=.=+|. |.+||+.++.     .  +.++|.++++-+|-- ...+-+..+..+++.+|-
T Consensus         2 kvIiDtD~G~DDa~Al~~al~-----~--~~~~l~git~~~Gn~-~~~~~~~n~~~~l~~~g~   56 (303)
T pfam01156         2 KVILDTDPGIDDALALLLALA-----S--PELDLLGITTVAGNV-PLEKTTRNALRLLELLGR   56 (303)
T ss_pred             CEEEECCCCHHHHHHHHHHHH-----C--CCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHCC
T ss_conf             499989997489999999966-----9--998899999925986-899999999999998389


No 214
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=26.05  E-value=38  Score=13.02  Aligned_cols=21  Identities=14%  Similarity=-0.073  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC
Q ss_conf             456665668999986236544
Q gi|254780546|r  125 AHTFDDQLETVYMRSQRDYAE  145 (423)
Q Consensus       125 ah~~dD~~Et~l~rl~r~sg~  145 (423)
                      |.-+|=-+|-|+--.+|.+|.
T Consensus       284 GFGaDLGaEKF~dIkcr~~gl  304 (524)
T cd00477         284 GFGADLGAEKFFNIKCRYSGL  304 (524)
T ss_pred             CCCCCCCCHHHHCCCCCCCCC
T ss_conf             355465605541130014799


No 215
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR.  Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=25.94  E-value=38  Score=13.01  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             HHHHHHHHHCCCC------CEEEEEE--CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999852799------8399996--6942489999999999986489972999999667798784689999999998
Q gi|254780546|r    7 ESVRFFVRSLVYP------AHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS   78 (423)
Q Consensus         7 ~~~~~~~~~l~~~------~~i~vAv--SGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~   78 (423)
                      .+.+..+..++..      .++..-+  ---.||-.+...++++..+      .+.|+.     -|.+...+..++.+|.
T Consensus        15 ~Af~~Av~~vN~~~~~l~~~~L~~~~~~~~~~dsf~~~~~~C~ll~~------gV~AI~-----Gp~~~~~~~~v~si~~   83 (324)
T cd06368          15 LAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQ------GVAAIF-----GPSSSSSANTVQSICD   83 (324)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC------CCEEEE-----CCCCHHHHHHHHHHHH
T ss_conf             99999999985687757881899999953368768999999998754------958999-----8897568999999863


Q ss_pred             HCCCCEEEEEEECC
Q ss_conf             71898899997504
Q gi|254780546|r   79 RLRIAHSVVSWKNS   92 (423)
Q Consensus        79 ~lgi~~~~~~~~~~   92 (423)
                      .+.|||...+|+..
T Consensus        84 ~~~vP~i~~~~~~~   97 (324)
T cd06368          84 ALEIPHITTSWSPN   97 (324)
T ss_pred             HCCCCEEEECCCCC
T ss_conf             32685588227888


No 216
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.67  E-value=38  Score=12.98  Aligned_cols=12  Identities=17%  Similarity=0.196  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999998718
Q gi|254780546|r   70 VRYVSDVCSRLR   81 (423)
Q Consensus        70 ~~~v~~~~~~lg   81 (423)
                      ...+....+.+|
T Consensus        50 ~~~a~~~f~~l~   61 (280)
T COG0157          50 LDVAEEVFELLG   61 (280)
T ss_pred             HHHHHHHHHHHC
T ss_conf             799999999809


No 217
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.35  E-value=39  Score=12.94  Aligned_cols=138  Identities=11%  Similarity=0.076  Sum_probs=61.8

Q ss_pred             HHHHHHHHHC-CCCCEEEEEECCC-H-------------------HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf             9999999852-7998399996694-2-------------------48999999999998648997299999966779878
Q gi|254780546|r    7 ESVRFFVRSL-VYPAHILVAVSGG-S-------------------DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET   65 (423)
Q Consensus         7 ~~~~~~~~~l-~~~~~i~vAvSGG-~-------------------DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~   65 (423)
                      |.+...+..- ...+.|+|.+|-| .                   ....+..+++.+......|    +++|.|||-.. 
T Consensus        24 E~~~AvleAAee~~SPVIlq~s~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~~v~~~A~~~~VP----VaLHlDH~~~~-   98 (340)
T cd00453          24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVP----VILHTDHCAKK-   98 (340)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEECCCCCCC-
T ss_conf             9999999999996999899887668988545003321244555542899999999999866998----89976778875-


Q ss_pred             HHHHHHHH----HHHHHHCCCC-EEEEEEECCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCHH---HH----------
Q ss_conf             46899999----9999871898-89999750478--77803788854555543200123442012---34----------
Q gi|254780546|r   66 AKDEVRYV----SDVCSRLRIA-HSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIM---TA----------  125 (423)
Q Consensus        66 s~~e~~~v----~~~~~~lgi~-~~~~~~~~~~~--~~~~~~~ar~~r~~~~~~~~~~~~~~~l~---~a----------  125 (423)
                      +-+|...+    ++.|...+-+ |.++=+|....  ..|++...+...+..-....-+.....+-   .+          
T Consensus        99 ~l~~i~~~i~aG~~~~~~~~~~~FsSvMiDgS~~p~eENi~~Tkevve~Ah~~gvsVEaELG~iGG~Edgv~~~~~~~~~  178 (340)
T cd00453          99 LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASA  178 (340)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             55889999997188886447889845875389899999999999999999984992899621025766676665554334


Q ss_pred             -HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             -566656689999862365444332
Q gi|254780546|r  126 -HTFDDQLETVYMRSQRDYAEKGMG  149 (423)
Q Consensus       126 -h~~dD~~Et~l~rl~r~sg~~g~~  149 (423)
                       -+.-|++..|.-++-.-++++.+.
T Consensus       179 ~yTdPeea~~fv~~tG~~~~vD~LA  203 (340)
T cd00453         179 LYTQPEDVDYAYTELSKISPRFTIA  203 (340)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             5589899999999866888861577


No 218
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.31  E-value=39  Score=12.93  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=25.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             983999966942489999999999986489972999999
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS   57 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~   57 (423)
                      ..||++++|||.-..=...++..+.+.    +.+|.++-
T Consensus         2 ~K~IllgvtGsIAayK~~~lir~L~k~----g~~V~vi~   36 (180)
T PRK07313          2 TKKILLAVSGSIAAYKAADLTSQLTKI----GYDVTVIM   36 (180)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_conf             976999995499999999999999988----99599997


No 219
>pfam02441 Flavoprotein Flavoprotein. This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyses the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase (EC:4.1.1.-).
Probab=24.88  E-value=39  Score=12.88  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             8399996694248999999999998648997299999
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI   56 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~   56 (423)
                      .||+||+||++...-...++..+.+    .+.++.++
T Consensus         1 kri~l~itGs~~a~~~~~ll~~L~~----~~~~v~vv   33 (118)
T pfam02441         1 KKILLGITGSSAAIKALRLLRELKK----EGAEVRVI   33 (118)
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHH----CCCEEEEE
T ss_conf             9799999178999999999999987----89979999


No 220
>pfam02016 Peptidase_S66 LD-carboxypeptidase. Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein. This family corresponds to Merops family S66.
Probab=24.88  E-value=39  Score=12.88  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=26.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEE-EE--CCCCCCCHHHH-HHHHHHHHHHCCCCEEE
Q ss_conf             9996694248999999999998648997299999-96--67798784689-99999999871898899
Q gi|254780546|r   23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SV--DHCLRETAKDE-VRYVSDVCSRLRIAHSV   86 (423)
Q Consensus        23 ~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~-~v--dHglr~~s~~e-~~~v~~~~~~lgi~~~~   86 (423)
                      +||-|++.|...+-...+.+ +..   +++++.- |+  .|+.-..++++ ++...+...+=.|....
T Consensus         3 iiaPS~~~~~~~~~~~~~~L-~~~---G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~d~~i~aI~   66 (281)
T pfam02016         3 IVAPSSPLDPERLERAIARL-ESL---GLEVVVGPHALARDGYLAGTDEERAADLHAAFADPEIDAII   66 (281)
T ss_pred             EEECCCCCCHHHHHHHHHHH-HHC---CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99289989999999999999-959---99898787624446764799999999999985089988999


No 221
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=24.81  E-value=40  Score=12.87  Aligned_cols=158  Identities=13%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHC-----CCCCEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             769899999999852-----79983999966942--48999999999998648997299999966779878468999999
Q gi|254780546|r    2 FLSPIESVRFFVRSL-----VYPAHILVAVSGGS--DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS   74 (423)
Q Consensus         2 ~~~p~~~~~~~~~~l-----~~~~~i~vAvSGG~--DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~   74 (423)
                      |++|.|.+.-|...+     ..+.-++|.++|-.  |-...-.+++++..-+. .+  +..+.| ||-+++       ..
T Consensus         1 m~~~~e~v~~lrea~pYi~~~rgktfVIk~gG~~~~d~~l~~~~~~DialL~~-lG--ik~VlV-HGgg~q-------I~   69 (284)
T CHL00202          1 MLNNDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSC-IG--LKIVVV-HGGGPE-------IN   69 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHHHHHHHHH-CC--CEEEEE-CCCCHH-------HH
T ss_conf             98778999999997799999689989999896666375489999999999998-89--979998-899668-------99


Q ss_pred             HHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99987189889999750478778037888545555432001234420123456665668999986236544433223576
Q gi|254780546|r   75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC  154 (423)
Q Consensus        75 ~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~  154 (423)
                      +.++++|++....  ++..-+. .+. -...               ...++    .++...++..+..+|....++++. 
T Consensus        70 ~~l~~~gi~~~f~--~G~RvTd-~~~-l~vv---------------~~vl~----g~vn~~lv~~l~~~g~~a~gl~g~-  125 (284)
T CHL00202         70 FWLKQLNISPKFW--NGIRVTD-KVT-MEIV---------------EMVLA----GKVNKDLVGSINANGGKAVGLCGK-  125 (284)
T ss_pred             HHHHHCCCCCCCC--CCCCCCC-HHH-HHHH---------------HHHHH----HHHHHHHHHHHHHCCCCCEEEECC-
T ss_conf             9999769984362--8832188-789-9999---------------99987----789999999998569950553125-


Q ss_pred             CCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             410035796871012104289999989981893202667864221018999764345
Q gi|254780546|r  155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI  211 (423)
Q Consensus       155 ~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l  211 (423)
                           .+++-..||.-            ...+.|+-++..-|+..-+..+-+-..|.
T Consensus       126 -----dg~~i~A~~~~------------~~D~g~vG~V~~Vd~~~I~~lL~~g~IpV  165 (284)
T CHL00202        126 -----DANLIVARASD------------KKDLGLVGEIQQVDPQLIDMLLEKNYIPV  165 (284)
T ss_pred             -----CCCEEEEECCC------------CCCCCCCCCCEEECHHHHHHHHHCCCEEE
T ss_conf             -----57669983589------------87744444412326799999970897599


No 222
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.75  E-value=40  Score=12.86  Aligned_cols=15  Identities=27%  Similarity=0.740  Sum_probs=6.4

Q ss_pred             CCCEEE--CCCCCCCCH
Q ss_conf             797661--230068881
Q gi|254780546|r  385 GGKPLL--APFSRFMTK  399 (423)
Q Consensus       385 ~g~~li--aP~~r~~~~  399 (423)
                      +|-.++  +|.+|.+++
T Consensus       308 ~~Ipi~enppLARaLY~  324 (363)
T COG1377         308 HGIPIIENPPLARALYR  324 (363)
T ss_pred             CCCCEECCHHHHHHHHH
T ss_conf             49956418077999997


No 223
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.13  E-value=41  Score=12.78  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=21.3

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9899818932026678642210189997643
Q gi|254780546|r  179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVR  209 (423)
Q Consensus       179 ~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~  209 (423)
                      ..+.++++-|+|||...+.--.=.++|+.+.
T Consensus       210 ~~le~~~~~w~EeP~~~~d~~~~~~l~~~~~  240 (368)
T cd03329         210 RALEELGFFWYEDPLREASISSYRWLAEKLD  240 (368)
T ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             6433465157517998447999999996099


No 224
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=24.09  E-value=41  Score=12.78  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=24.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             839999669424899999999999864899729999996
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV   58 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v   58 (423)
                      .+|+|+||||..+-=.+.+...+.+ .   +.++.++--
T Consensus         5 k~ill~v~gsiaayk~~~l~r~L~~-~---ga~v~vvmt   39 (392)
T COG0452           5 KRILLGVTGSIAAYKSVELVRLLRR-S---GAEVRVVMT   39 (392)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHH-C---CCEEEEECC
T ss_conf             6389994173334467899998762-7---973689706


No 225
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=24.05  E-value=41  Score=12.77  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=5.8

Q ss_pred             CCCEEECCCEEEEEECC
Q ss_conf             98456107579998899
Q gi|254780546|r  298 KRGCVSIGRVVIDRRAN  314 (423)
Q Consensus       298 ~~~~~tl~g~~i~~~~~  314 (423)
                      +.+++|.-|=.++.+..
T Consensus       178 TGGTItGvgr~LK~~~p  194 (315)
T TIGR01136       178 TGGTITGVGRVLKEQNP  194 (315)
T ss_pred             CCCCHHHHHHHHHHHCC
T ss_conf             67511168989863268


No 226
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=23.82  E-value=41  Score=12.74  Aligned_cols=51  Identities=8%  Similarity=0.073  Sum_probs=32.4

Q ss_pred             CCHHHH-HHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCHH
Q ss_conf             784689-99999999871898899997504787780378885455554320012344-2012
Q gi|254780546|r   64 ETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIM  123 (423)
Q Consensus        64 ~~s~~e-~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~-~~l~  123 (423)
                      .+||-+ .+...+.|+++||||+..-+..- +++.        +...+...+++.|. ..+.
T Consensus         7 S~SD~~~m~~a~~~L~~fgi~~e~~V~SAH-RTP~--------~~~~ya~~a~~~G~P~ViI   59 (159)
T TIGR01162         7 SDSDLETMKKAAEILEEFGIPYELRVVSAH-RTPE--------LMFEYAKEAEERGIPKVII   59 (159)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCHH--------HHHHHHHHHHHCCCCEEEE
T ss_conf             725478999999999855996678986067-7808--------8999999998678997998


No 227
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699   Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=23.81  E-value=41  Score=12.74  Aligned_cols=131  Identities=18%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             EEEEECC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCHHH-H---HHHHHHHHHHCCCCEEEEEEEC---
Q ss_conf             9999669-424899999999999864899729999996677--9878468-9---9999999987189889999750---
Q gi|254780546|r   22 ILVAVSG-GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKD-E---VRYVSDVCSRLRIAHSVVSWKN---   91 (423)
Q Consensus        22 i~vAvSG-G~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg--lr~~s~~-e---~~~v~~~~~~lgi~~~~~~~~~---   91 (423)
                      ++|+=|| ||||+  |-.+.+-....    .+|+.+|   -  -||-+.. |   |--.++|-+.-+=..+.++|+.   
T Consensus         5 ~vvGPSGaGKDtL--l~~AR~~l~~~----~r~~F~r---RvITR~a~AggEnH~Als~~EF~~~~~~G~FAl~W~AHGL   75 (183)
T TIGR02322         5 YVVGPSGAGKDTL--LDYARARLAGD----PRVHFVR---RVITRPADAGGENHDALSTEEFDAREDGGAFALSWQAHGL   75 (183)
T ss_pred             EEEECCCCCHHHH--HHHHHHHHCCC----CCEEEEE---EEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9970778867789--99999970489----9658831---2774375224667640477899999718981898613674


Q ss_pred             -------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             -------------------478778037888545555432001234420123456--66566899998623654443322
Q gi|254780546|r   92 -------------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGL  150 (423)
Q Consensus        92 -------------------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l  150 (423)
                                         .+.+-..-..+| .||..+.-.+-...-++|..=--  .=...|.+.-||.|..-..|-.+
T Consensus        76 ~YGiP~eid~wL~~G~~Vv~NGSRa~Lp~ar-~rYp~L~~V~Ita~~dVLa~RL~~RgRE~~~~I~~RL~Rs~~~~~dll  154 (183)
T TIGR02322        76 SYGIPVEIDQWLEAGDVVVVNGSRAVLPEAR-QRYPNLLVVNITASPDVLAQRLAARGRESAEEIEERLARSARFAGDLL  154 (183)
T ss_pred             CCCCCHHHHHHHHCCCEEEEECHHHHHHHHH-HHHHCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf             3578303787875499899975288999998-743246027874581289999997589898899999887753110220


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             357641003579
Q gi|254780546|r  151 SGMCDTILYDLN  162 (423)
Q Consensus       151 ~~~~~~~~~~~~  162 (423)
                      +...+.....+.
T Consensus       155 ~~~~dv~~i~Ns  166 (183)
T TIGR02322       155 LEPADVTTIDNS  166 (183)
T ss_pred             CCCCCEEEEECC
T ss_conf             059872798468


No 228
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.44  E-value=42  Score=12.69  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCEEE
Q ss_conf             983999966942489999999999986489972999999667798784689-99999999871898899
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRLRIAHSV   86 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e-~~~v~~~~~~lgi~~~~   86 (423)
                      -.+++||-|-|---+-++-++..        .++++++|-+.|.+..-..| ...+++..++.|.....
T Consensus        28 ik~~vVAS~tG~tA~k~lemveg--------~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~   88 (186)
T COG1751          28 IKHIVVASSTGYTALKALEMVEG--------DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT   88 (186)
T ss_pred             CCEEEEEECCCHHHHHHHHHCCC--------CCEEEEEEEECCCCCCCCEECCHHHHHHHHHCCCEEEE
T ss_conf             61599984365789999984426--------73599998322655688520589999999970860043


No 229
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase; InterPro: IPR005784    D-amino acid aminotransferase (2.6.1.21 from EC) catalyzes transamination between various D-amino acids and alpha-keto acids. This enzyme is a homodimer. The pyridoxal phosphate attachment site is a Lys in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family .; GO: 0008483 transaminase activity, 0008152 metabolic process.
Probab=23.34  E-value=42  Score=12.68  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=19.3

Q ss_pred             HHCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             210428999998998189320266786
Q gi|254780546|r  169 FLRCRREDIRSFLLQRNISWCEDPSNT  195 (423)
Q Consensus       169 LL~~~r~~l~~~~~~~~i~wveDpSN~  195 (423)
                      |-++||+.|...|.+.||++-|.|--.
T Consensus       202 LnGITR~~i~~~~~~~~~p~~E~~~T~  228 (278)
T TIGR01121       202 LNGITRQVILKLAEENGIPVKEEPFTK  228 (278)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             168447899999874689701221256


No 230
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=23.31  E-value=42  Score=12.68  Aligned_cols=28  Identities=7%  Similarity=0.179  Sum_probs=19.4

Q ss_pred             CCCHHHHHHHHHHHCCCC-----CCCCCCCCCC
Q ss_conf             042899999899818932-----0266786422
Q gi|254780546|r  171 RCRREDIRSFLLQRNISW-----CEDPSNTDDR  198 (423)
Q Consensus       171 ~~~r~~l~~~~~~~~i~w-----veDpSN~d~~  198 (423)
                      +.--.-+-++|..+|+||     |-||.+.+.=
T Consensus       131 DMEsaAvA~va~~~giPF~viRaISD~a~~~lP  163 (212)
T TIGR03468       131 DMESGAVAAVAAAAGLPFAVIRVISDPADRALP  163 (212)
T ss_pred             ECHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf             032899999999819978999998536665477


No 231
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=23.27  E-value=37  Score=13.11  Aligned_cols=31  Identities=0%  Similarity=-0.176  Sum_probs=11.9

Q ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             299999966779878468999999999871898
Q gi|254780546|r   51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA   83 (423)
Q Consensus        51 ~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~   83 (423)
                      .++-+.|||-  ...|.-++-......-..|-.
T Consensus        78 ~~vp~~TVnr--~C~SGl~Ai~~aa~~I~~G~~  108 (392)
T PRK06633         78 KEVPGYTINK--VCGSGLKSVALAANSIMTGDN  108 (392)
T ss_pred             CCCCEEEECC--CCHHHHHHHHHHHHHHHCCCC
T ss_conf             8887268877--337999999999999967998


No 232
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297   LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=23.27  E-value=39  Score=12.94  Aligned_cols=87  Identities=14%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             CEEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCCEEE---------C--CCEEEEC-CCCCEEEECCCCCCCCCCCCC
Q ss_conf             456107579998899899984534377552368982320---------7--8417512-777503521675442542012
Q gi|254780546|r  300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW---------D--GRYQFQN-LSDSLIQIGPQSYRKADVPSG  367 (423)
Q Consensus       300 ~~~tl~g~~i~~~~~~l~i~RE~~~~~~~~~~~~~~~~w---------D--gR~~i~~-~~~~~~~l~~~g~~~~~~~~~  367 (423)
                      -+.-.-.+++..|+|.+.+.|=+    .-.+.+|+.+-+         +  |-|.+.. .......-|..|+..+...+-
T Consensus       192 LkALIFDS~YD~YrGVv~~vRv~----~G~ik~gD~I~~Mstgk~y~V~evG~~~P~~~~~~~~L~aGeVGy~~AgIK~v  267 (598)
T TIGR01393       192 LKALIFDSHYDNYRGVVVLVRVF----EGTIKKGDKIRFMSTGKEYEVDEVGVFTPKLEVKTQELSAGEVGYIIAGIKDV  267 (598)
T ss_pred             CEEEEEEEEECCCCEEEEEEEEE----ECEECCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCEECCCEEEEEEEEEEC
T ss_conf             32278843543865089999995----26864698899953487666755003434520146620016305999865310


Q ss_pred             CC-------CCCCHHHHHHCCHHHCCCEEE
Q ss_conf             31-------135546776271242797661
Q gi|254780546|r  368 IP-------PIIAQRALSSMPSKEGGKPLL  390 (423)
Q Consensus       368 ~~-------~~~~~~~l~~lP~~~~g~~li  390 (423)
                      .+       +....++.-.+|....-+++|
T Consensus       268 ~D~~VGDTiT~~~~Pa~eplpGF~~~KP~V  297 (598)
T TIGR01393       268 SDVKVGDTITSVKNPAKEPLPGFKEVKPMV  297 (598)
T ss_pred             CCEECCCEEECCCCCCCCCCCCCCCCCCEE
T ss_conf             411205445256787376788861257658


No 233
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=23.20  E-value=42  Score=12.66  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             8999998998189320266786422
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      =++|.++|+++||+.|||..-.--.
T Consensus       135 ~~~I~~iak~~~i~vIEDaA~a~Gs  159 (375)
T PRK11706        135 MDTIMALAKKHNLFVVEDAAQGVMS  159 (375)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             8999998853790898344003687


No 234
>PRK11175 universal stress protein UspE; Provisional
Probab=23.18  E-value=42  Score=12.66  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC--------CCHHHH---------HHHHHHHHH---
Q ss_conf             983999966942489999999999986489972999999667798--------784689---------999999998---
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--------ETAKDE---------VRYVSDVCS---   78 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr--------~~s~~e---------~~~v~~~~~---   78 (423)
                      -.||+|++-|..+|..-+.-+..+++..+ .  +|+++++-+...        ++..++         .+.+++..+   
T Consensus         3 fk~ILv~~D~s~~s~~Al~rA~~LA~~~~-A--~l~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (304)
T PRK11175          3 YQNILVVIDPNQDDQPALARAVYLAQRSG-A--KITAFLSIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIQEQAKPYL   79 (304)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHC-C--EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78799977997432999999999999859-9--89999996067731013478256999999999999999999999997


Q ss_pred             HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             71898899997504787780378885455554320012344201234566656689999862365444332235764100
Q gi|254780546|r   79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL  158 (423)
Q Consensus        79 ~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~  158 (423)
                      ..|++..+.-....++            +....+.+.+.+++.++.|.|..+....    ++.|+.-.  .+....+   
T Consensus        80 ~~g~~v~~~v~~~~~p------------~~~Ii~~a~~~~~DLVV~g~~~~~~l~~----~l~gs~~~--~llR~~~---  138 (304)
T PRK11175         80 DAGVPIDIKVVWHNRP------------FEAIIQEVIKGKHDLVVKMTHQHDKLES----VIFTPTDW--HLLRKCP---  138 (304)
T ss_pred             HCCCCCEEEEEECCCH------------HHHHHHHHHHCCCCEEEECCCCCCHHHH----HHHCHHHH--HHHHCCC---
T ss_conf             4698710799988987------------9999999997599899987777623443----30051589--9984499---


Q ss_pred             CCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             3579687101210428999998998189320266786422
Q gi|254780546|r  159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       159 ~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                              .|.|-++...-..   ...+-.--|+|+.++.
T Consensus       139 --------~PVllv~~~~~~~---~~~IlvavD~~~~~~~  167 (304)
T PRK11175        139 --------CPVLMVKDHDWPE---GGKILVAVNVASEDPY  167 (304)
T ss_pred             --------CCEEEEECCCCCC---CCCEEEEECCCCCCHH
T ss_conf             --------9589972566666---6858999678863255


No 235
>PRK09409 insertion element IS2 transposase InsD; Reviewed
Probab=23.06  E-value=43  Score=12.64  Aligned_cols=18  Identities=17%  Similarity=0.141  Sum_probs=8.8

Q ss_pred             CCHHHHHHHHHHHCCCCC
Q ss_conf             428999998998189320
Q gi|254780546|r  172 CRREDIRSFLLQRNISWC  189 (423)
Q Consensus       172 ~~r~~l~~~~~~~~i~wv  189 (423)
                      ++-.++.++|+++||.+.
T Consensus       203 y~S~~~~~~~~~~gi~~s  220 (301)
T PRK09409        203 YRANETRQFARMLGLEPK  220 (301)
T ss_pred             HHHHHHHHHHHHCCCEEC
T ss_conf             489999999998498760


No 236
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis.  This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=22.85  E-value=43  Score=12.61  Aligned_cols=55  Identities=11%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9983999966942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV   87 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~   87 (423)
                      .+...+|..|.|-=..+++..++.+       ++++.++ |     |+..  ...-.+.++.+|-.....
T Consensus        51 ~~~~~vv~aSsGN~g~alA~~a~~~-------Gi~~~I~-~-----p~~~--~~~k~~~i~~~GA~Vv~v  105 (291)
T cd01561          51 KPGTTIIEPTSGNTGIGLAMVAAAK-------GYRFIIV-M-----PETM--SEEKRKLLRALGAEVILT  105 (291)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHC-------CCCEEEE-C-----CCCC--HHHHHHHHHHCCCEEEEE
T ss_conf             8997899808984799999999980-------9983896-4-----7630--699999999669889997


No 237
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=22.59  E-value=43  Score=12.58  Aligned_cols=79  Identities=14%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             HHHHHCCCCCEEEEEEEECCCCCCCH-HHHHHHHHHHHHHCCCC---EEEEEEE-CCCCCCCCHHHHHH--HHHHHHHHH
Q ss_conf             99986489972999999667798784-68999999999871898---8999975-04787780378885--455554320
Q gi|254780546|r   41 SVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLRIA---HSVVSWK-NSKPQTGLMAAARE--ARYALISEH  113 (423)
Q Consensus        41 ~~~~~~~~~~~~l~a~~vdHglr~~s-~~e~~~v~~~~~~lgi~---~~~~~~~-~~~~~~~~~~~ar~--~r~~~~~~~  113 (423)
                      .+....+...+++  ...|-+-+++. .+|..-..++|+++|-.   ++..+-+ ...+.+|+.+..+.  .+|.++   
T Consensus        25 sl~~~~~~~~f~v--~vLsDs~~p~~~~~E~~a~~~l~~~~~~~~~v~Yr~R~~n~g~KAGni~~~l~~~g~~yd~~---   99 (254)
T cd04191          25 SLAKTGLADHFDF--FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYM---   99 (254)
T ss_pred             HHHHHCCCCCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEE---
T ss_conf             9986388565379--99808997578999999999999984788745988568667987377999999539984679---


Q ss_pred             CCCCCCCCHHHH
Q ss_conf             012344201234
Q gi|254780546|r  114 AKTINATLIMTA  125 (423)
Q Consensus       114 ~~~~~~~~l~~a  125 (423)
                       --..++.+..+
T Consensus       100 -~vlDAD~~~~~  110 (254)
T cd04191         100 -VVLDADSLMSG  110 (254)
T ss_pred             -EEECCCCCCCH
T ss_conf             -99758889986


No 238
>pfam00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain.
Probab=22.08  E-value=44  Score=12.51  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             729999996677987846899999999987189889999750
Q gi|254780546|r   50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN   91 (423)
Q Consensus        50 ~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~   91 (423)
                      ...+.++.|  |=.+.|......-.+.|+++||.+.+.+++.
T Consensus        29 ~P~Laii~v--g~~~~s~~Yv~~k~k~~~~~Gi~~~~~~l~~   68 (117)
T pfam00763        29 TPKLAVILV--GDDPASQVYVRSKRKAAEELGIESELIRLPE   68 (117)
T ss_pred             CCEEEEEEE--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             971899984--8975679999999999997287169987776


No 239
>PRK07261 topology modulation protein; Provisional
Probab=22.05  E-value=44  Score=12.51  Aligned_cols=53  Identities=11%  Similarity=0.152  Sum_probs=21.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHH-HHHHHHHHH
Q ss_conf             999966942489999999999986489972999999667798784689-999999998
Q gi|254780546|r   22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCS   78 (423)
Q Consensus        22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e-~~~v~~~~~   78 (423)
                      .+||.||..-|+.    +..+...-+.|-+.+=.++...|..+-+.+| .+.++++.+
T Consensus         4 ~IiG~sGsGKSTl----Ar~L~~~~~ip~~~LD~l~w~p~w~~~~~~e~~~~~~~~~~   57 (171)
T PRK07261          4 AIIGYSGSGKSTL----ARFLGQHYNCPVLHLDQLHFSSNWQERDDDDMIADISNFLL   57 (171)
T ss_pred             EEECCCCCCHHHH----HHHHHHHHCCCEEEECCEEECCCCEECCHHHHHHHHHHHHH
T ss_conf             9988999868999----99999987979797022788899988889999999999984


No 240
>pfam12268 DUF3612 Protein of unknown function (DUF3612). This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with pfam01381.
Probab=21.96  E-value=45  Score=12.49  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             28999998998189320266786422
Q gi|254780546|r  173 RREDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       173 ~r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      -|.+|+..++-.+|.||+|--..+.+
T Consensus       133 ik~~L~sVa~ILnInWI~rgie~~Ar  158 (178)
T pfam12268       133 IKTDLSSVARILNINWIERGIQEEAR  158 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             99999999987610877742368864


No 241
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=21.95  E-value=45  Score=12.49  Aligned_cols=63  Identities=17%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             EEEEEECCCHH---HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             39999669424---8999999999998648997299999966779878468999999999871898899997504
Q gi|254780546|r   21 HILVAVSGGSD---SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        21 ~i~vAvSGG~D---S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
                      ---|+|+||.|   .-.+-..|-.+..+.+    ..  +.|+-|--..++.   ..++|+++.||+....+-++.
T Consensus         3 g~~V~~~Ggrd~~D~~~i~~~Ld~~~~~~p----d~--vlihGG~~kGad~---lA~~WA~~~gv~~i~f~~dW~   68 (71)
T pfam10686         3 GTRVAFSGGRDFNDHRLIWDALDKVHARHP----DM--VLLHGGAPKGAER---IAARWARRRGVPQVAFKPDWR   68 (71)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCC----CE--EEEECCCCCCHHH---HHHHHHHHCCCCEEEECCCHH
T ss_conf             998999808986509999999999998689----87--9997798633799---999999986997697685611


No 242
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.87  E-value=45  Score=12.48  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf             99999999852799839999669424899999999
Q gi|254780546|r    6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALH   40 (423)
Q Consensus         6 ~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~   40 (423)
                      ...+..++..+.+...|+|-+.+|.-|.-....|.
T Consensus        43 ~~~~~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~   77 (96)
T cd01444          43 EDSLDDWLGDLDRDRPVVVYCYHGNSSAQLAQALR   77 (96)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             66799988985689818998089668999999999


No 243
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=21.54  E-value=45  Score=12.44  Aligned_cols=144  Identities=13%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             89999999985279983999966942489999999999986489972999999667798784689999999998718988
Q gi|254780546|r    5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH   84 (423)
Q Consensus         5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~   84 (423)
                      +...|..+.+.+.+..-+-+|+-.|.+|.-|+   .     .   +++|.|+  |+.     ..-.+.+++++++-|++.
T Consensus        18 ~HSev~~a~~~i~pgk~LDlgcG~GRNslyLa---~-----~---G~~Vtav--D~n-----~~aL~~l~~ia~~e~l~i   79 (192)
T pfam03848        18 THSEVLEAVKTVKPGKALDLGCGQGRNSLFLS---L-----L---GYDVTAV--DHN-----ENSIANLQDIKEKENLDI   79 (192)
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH---H-----C---CCEEEEE--ECC-----HHHHHHHHHHHHHCCCCC
T ss_conf             80999999863799746660478973189998---6-----8---9917999--799-----999999999999709975


Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             99997504787780378885455554320012344201234566656689999862365444332235-76410035796
Q gi|254780546|r   85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG-MCDTILYDLNL  163 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~-~~~~~~~~~~~  163 (423)
                      .+...|...  .++++     .|.+..        ..+++-...-+.+..++..+.+..-.+|..+.- .|..  ....-
T Consensus        80 ~~~~~Din~--~~~~e-----~YD~Ii--------sTVvfmFL~~~~ip~iI~~mq~~T~pGGynlIv~am~t--~d~pc  142 (192)
T pfam03848        80 PTALYDINS--ASIDE-----NYDFIL--------STVVLMFLQAERIPAIIANMQEHTNVGGYNLIVAAMST--ADYPC  142 (192)
T ss_pred             EEEEECCCC--CCCCC-----CCCEEE--------EEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCC
T ss_conf             268731555--68767-----768798--------88877731867877999999985289988999976145--53789


Q ss_pred             EEECCH-HCCCHHHHHHHHHHHC
Q ss_conf             871012-1042899999899818
Q gi|254780546|r  164 WISRPF-LRCRREDIRSFLLQRN  185 (423)
Q Consensus       164 ~i~RPL-L~~~r~~l~~~~~~~~  185 (423)
                      .  -|+ -.+...||.+|=+...
T Consensus       143 ~--~~f~ftfk~gEL~~yy~~We  163 (192)
T pfam03848       143 T--VPFSFTFKEGELKRYYQDWE  163 (192)
T ss_pred             C--CCCCCCCCHHHHHHHHCCCE
T ss_conf             9--89887788018999738987


No 244
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.51  E-value=46  Score=12.43  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=12.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             9998998189320266786422101
Q gi|254780546|r  177 IRSFLLQRNISWCEDPSNTDDRFER  201 (423)
Q Consensus       177 l~~~~~~~~i~wveDpSN~d~~f~R  201 (423)
                      +....-+.|..|.  |...-++|+|
T Consensus       105 i~~~~~Q~G~~fs--~k~l~pk~~r  127 (352)
T PRK05702        105 LLAPILQGGWLFS--GKALKPKFSK  127 (352)
T ss_pred             HHHHHHHHCCCCC--CCCCCCCHHH
T ss_conf             9999985274516--4247888465


No 245
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=21.46  E-value=46  Score=12.43  Aligned_cols=74  Identities=14%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHCCCC------CEEE---EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             99999999852799------8399---99669424899999999999864899729999996677987846899999999
Q gi|254780546|r    6 IESVRFFVRSLVYP------AHIL---VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV   76 (423)
Q Consensus         6 ~~~~~~~~~~l~~~------~~i~---vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~   76 (423)
                      +.+.+..+..++..      .++.   -=+.-. ||-..-..++++...      .|.|+.     -|.|..-+..++.+
T Consensus        14 e~AFr~Av~~iN~~~~~l~~~~L~~~i~~v~~~-DsF~~~k~~C~ll~~------GV~AIf-----GP~s~~sa~~v~Si   81 (400)
T cd06391          14 DEVFRMAVADLNQNNEILQTEKITVSVTFVDGN-NPFQAVQEACELMNQ------GILALV-----SSIGCTSAGSLQSL   81 (400)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHC------CCEEEE-----CCCCHHHHHHHHHH
T ss_conf             999999999860583325787106888873899-908999999998743------946999-----99975589999987


Q ss_pred             HHHCCCCEEEEEEEC
Q ss_conf             987189889999750
Q gi|254780546|r   77 CSRLRIAHSVVSWKN   91 (423)
Q Consensus        77 ~~~lgi~~~~~~~~~   91 (423)
                      |..+.|||....|+.
T Consensus        82 cdal~IPhi~~~~~~   96 (400)
T cd06391          82 ADAMHIPHLFIQRST   96 (400)
T ss_pred             HCCCCCCCEEECCCC
T ss_conf             446889807632577


No 246
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=21.45  E-value=30  Score=13.72  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=18.5

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             04289999989981893202667864
Q gi|254780546|r  171 RCRREDIRSFLLQRNISWCEDPSNTD  196 (423)
Q Consensus       171 ~~~r~~l~~~~~~~~i~wveDpSN~d  196 (423)
                      .--+++|++|+..+|||.+|--....
T Consensus       243 S~A~~~L~af~E~~~iPv~ETQaGKs  268 (617)
T COG3962         243 SGAREALRAFAETHGIPVVETQAGKS  268 (617)
T ss_pred             CHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             30799999999864996576357864


No 247
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.22  E-value=46  Score=12.39  Aligned_cols=16  Identities=6%  Similarity=0.206  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             9999989981893202
Q gi|254780546|r  175 EDIRSFLLQRNISWCE  190 (423)
Q Consensus       175 ~~l~~~~~~~~i~wve  190 (423)
                      +.+.+.++..|+.+..
T Consensus       219 ~~l~~~l~~~gi~i~~  234 (466)
T PRK06115        219 KTLQKALAKQGMRFKL  234 (466)
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             8888899876949995


No 248
>PRK07116 flavodoxin; Provisional
Probab=21.08  E-value=46  Score=12.37  Aligned_cols=21  Identities=0%  Similarity=-0.208  Sum_probs=9.1

Q ss_pred             HHHHHHHCCCCEEEEEEECCC
Q ss_conf             999998718988999975047
Q gi|254780546|r   73 VSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        73 v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      ++.+.+.+|-+..-+.....-
T Consensus        18 A~~I~~~~gaDi~eI~~~~~Y   38 (158)
T PRK07116         18 AEKLAEVTGGDLYEITPAQPY   38 (158)
T ss_pred             HHHHHHHHCCCEEEEEECCCC
T ss_conf             999999879997999867876


No 249
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=21.01  E-value=47  Score=12.36  Aligned_cols=46  Identities=11%  Similarity=-0.047  Sum_probs=25.9

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf             9999998527998399996694248999999999998648997299999966779
Q gi|254780546|r    8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL   62 (423)
Q Consensus         8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl   62 (423)
                      .....++.+.+...|+|-|..|.-|...+.+|++    +   +++  ++++.-|+
T Consensus        50 ~~~~~~~~lp~d~~ivv~C~~G~rS~~aa~~L~~----~---G~~--v~~L~GG~   95 (100)
T cd01523          50 IEEDILDQLPDDQEVTVICAKEGSSQFVAELLAE----R---GYD--VDYLAGGM   95 (100)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH----C---CCE--EEEECCCH
T ss_conf             6888996478998399992896569999999998----7---983--79836627


No 250
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=20.98  E-value=47  Score=12.36  Aligned_cols=109  Identities=17%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             CCCCCE-EEEEECCCHHHHHHHHHHHHHHH------------------------HCCCCCEEEEEEEECCCC--------
Q ss_conf             279983-99996694248999999999998------------------------648997299999966779--------
Q gi|254780546|r   16 LVYPAH-ILVAVSGGSDSMGLLIALHSVLS------------------------DRSFGKIKFSAISVDHCL--------   62 (423)
Q Consensus        16 l~~~~~-i~vAvSGG~DS~aLl~ll~~~~~------------------------~~~~~~~~l~a~~vdHgl--------   62 (423)
                      +.+++- -+|+=||=.=|| |||+|--+=.                        ++...++   +.=.||=|        
T Consensus        28 i~~GE~~~IvG~SGSGKST-LLHlLGGLD~PT~G~v~f~G~~l~~lS~~~~~~LRN~~LGF---iYQFHHLL~dFtaLEN  103 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKST-LLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGF---IYQFHHLLPDFTALEN  103 (221)
T ss_pred             EECCCEEEEECCCCCCHHH-HHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCC---EEEHHHCCCCCCHHHH
T ss_conf             3066337987367871689-99987306899631589706323440446788751222584---4432020300002688


Q ss_pred             -------CCCHHHH-HHHHHHHHHHCCCCEEEEEEE-------------------------CCCCCCCCHHHHHHHHHHH
Q ss_conf             -------8784689-999999998718988999975-------------------------0478778037888545555
Q gi|254780546|r   63 -------RETAKDE-VRYVSDVCSRLRIAHSVVSWK-------------------------NSKPQTGLMAAAREARYAL  109 (423)
Q Consensus        63 -------r~~s~~e-~~~v~~~~~~lgi~~~~~~~~-------------------------~~~~~~~~~~~ar~~r~~~  109 (423)
                             +..|..| .+...+..++-|..|.+-+..                         .+.|++|+.......-|.+
T Consensus       104 VaMP~LIg~~s~~ea~~~A~~mL~~VgL~~R~~h~PSELSGGERQRvAIARALvN~P~lvlADEPTGNLD~~~a~~iF~L  183 (221)
T TIGR02211       104 VAMPLLIGKKSKKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKSIFEL  183 (221)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             77777535899889999999998860733445557773456337999999986189765861298853237779999999


Q ss_pred             HHHHCCCCCCCCHHHHHHH
Q ss_conf             4320012344201234566
Q gi|254780546|r  110 ISEHAKTINATLIMTAHTF  128 (423)
Q Consensus       110 ~~~~~~~~~~~~l~~ah~~  128 (423)
                      +.+.-++.+...++..|..
T Consensus       184 ~~eLN~~~~TsflvVTHD~  202 (221)
T TIGR02211       184 MLELNRELNTSFLVVTHDL  202 (221)
T ss_pred             HHHHHHHCCCEEEEEECCH
T ss_conf             9998865391699983475


No 251
>PRK09108 type III secretion system protein HrcU; Validated
Probab=20.75  E-value=47  Score=12.33  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=11.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             99998998189320266786422101
Q gi|254780546|r  176 DIRSFLLQRNISWCEDPSNTDDRFER  201 (423)
Q Consensus       176 ~l~~~~~~~~i~wveDpSN~d~~f~R  201 (423)
                      -+....-+.|..|-  +....++|+|
T Consensus        99 ~i~~~~~Q~G~~fs--~k~l~pk~~r  122 (354)
T PRK09108         99 GILGQAPQTGLNIS--LKPVMPKFDS  122 (354)
T ss_pred             HHHHHHHCCCCCCC--HHHCCCCHHC
T ss_conf             99999840365405--1413676020


No 252
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=20.73  E-value=47  Score=12.32  Aligned_cols=15  Identities=33%  Similarity=0.543  Sum_probs=11.8

Q ss_pred             EEEEECCCHHHHHHH
Q ss_conf             999966942489999
Q gi|254780546|r   22 ILVAVSGGSDSMGLL   36 (423)
Q Consensus        22 i~vAvSGG~DS~aLl   36 (423)
                      |+-++||-.-|+||=
T Consensus         5 IVTGlSGAGKsvAl~   19 (286)
T COG1660           5 IVTGLSGAGKSVALR   19 (286)
T ss_pred             EEECCCCCCHHHHHH
T ss_conf             995688876889999


No 253
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=20.68  E-value=47  Score=12.32  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             8999998998189320266786422
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDDR  198 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~~  198 (423)
                      =++|.++|+.+|++.|||.+-.--.
T Consensus       137 ~~~i~~ia~~~~i~lIEDaA~a~Ga  161 (380)
T TIGR03588       137 MQAIAALAKKHGLKIIEDASHALGA  161 (380)
T ss_pred             HHHHHHHHHHCCCEEEEECCCHHCC
T ss_conf             9999999998698899988001157


No 254
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=20.30  E-value=48  Score=12.26  Aligned_cols=13  Identities=8%  Similarity=0.256  Sum_probs=5.5

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             4420123456665
Q gi|254780546|r  118 NATLIMTAHTFDD  130 (423)
Q Consensus       118 ~~~~l~~ah~~dD  130 (423)
                      |...++++-|+..
T Consensus        21 G~NVvllsNHQtE   33 (235)
T cd07985          21 GHNVVLLANHQTE   33 (235)
T ss_pred             CCCEEEEECCCCC
T ss_conf             9968997177675


No 255
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.25  E-value=48  Score=12.26  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=11.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             9998998189320266786422101
Q gi|254780546|r  177 IRSFLLQRNISWCEDPSNTDDRFER  201 (423)
Q Consensus       177 l~~~~~~~~i~wveDpSN~d~~f~R  201 (423)
                      +....-..|..|-  +...-++|+|
T Consensus        98 i~~~~~q~G~~fs--~k~l~pk~~r  120 (349)
T PRK12721         98 VGSVILQVGPVLA--TKAIGFKGEK  120 (349)
T ss_pred             HHHHHHHCCCEEC--HHHCCCCHHH
T ss_conf             9999973063507--1414876654


No 256
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.24  E-value=48  Score=12.25  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=9.0

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             98998189320266786422101
Q gi|254780546|r  179 SFLLQRNISWCEDPSNTDDRFER  201 (423)
Q Consensus       179 ~~~~~~~i~wveDpSN~d~~f~R  201 (423)
                      ...-+.|..|-  +...-|+|+|
T Consensus       109 ~~~~Q~G~~fs--~k~l~Pk~~k  129 (358)
T PRK13109        109 ASLLQNLPRFV--LDRIQPKWSR  129 (358)
T ss_pred             HHHHHCCCEEC--CCCCCCCHHH
T ss_conf             99860140305--4126887676


No 257
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=20.02  E-value=49  Score=12.22  Aligned_cols=101  Identities=12%  Similarity=0.007  Sum_probs=57.1

Q ss_pred             HHHH-HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHHH--HHHHHHHHHHHCCCCEE
Q ss_conf             9999-852799839999669424899999999999864899729999996677987-8468--99999999987189889
Q gi|254780546|r   10 RFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKD--EVRYVSDVCSRLRIAHS   85 (423)
Q Consensus        10 ~~~~-~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~~--e~~~v~~~~~~lgi~~~   85 (423)
                      ..++ +-++.+.++++++|||+--..+-..|.+..+...+  -+++.+.+|--.-+ +..+  ....-+.+....+||..
T Consensus         9 a~~i~k~i~~K~~~vLGLatGSTP~~~Y~~Li~~~~~~sf--~nV~tFnlDEY~~l~dh~qSy~~~m~e~lf~hIdI~~e   86 (169)
T cd00458           9 EDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEI--SDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDIIPAS   86 (169)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC--CEEEEEEEHCCCCCCCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf             9999999960778499957998879999999999744780--13899840000479876310999999985412699999


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999750478778037888545555432001
Q gi|254780546|r   86 VVSWKNSKPQTGLMAAAREARYALISEHAK  115 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~  115 (423)
                      -+...  ..+...+. |.+..|..+...+.
T Consensus        87 NIh~p--dG~~p~~~-aac~~ye~~i~~~g  113 (169)
T cd00458          87 NVHYV--DTSLPIEK-ACEKYEREILDQVD  113 (169)
T ss_pred             HCCCC--CCCCCCHH-HHHHHHHHHHHHCC
T ss_conf             92589--99999789-99999999998659


Done!