HHsearch results for GI: 254780546 and protein with PDBid: 1vbk_A
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=97.41 E-value=0.00031 Score=47.44 Aligned_cols=127 Identities=10% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCC
Q ss_conf 9839999669424899999999999864899729999996677987846899999999987189--88999975047877
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQT 96 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi--~~~~~~~~~~~~~~ 96 (423)
..++++-+|||- |-+-.+++- + + +.++..+|.++ .+.+.+-...+.+...++.- .+++...+
T Consensus 179 ~Gk~l~LlSGGi-SpVAa~~~m---K-R---G~~v~~v~f~~--~~~~~~kv~~l~~~l~~~~~~~~~~~~~~~------ 242 (307)
T 1vbk_A 179 EGRMIGILHDEL-SALAIFLMM---K-R---GVEVIPVYIGK--DDKNLEKVRSLWNLLKRYSYGSKGFLVVAE------ 242 (307)
T ss_dssp TCEEEEECSSHH-HHHHHHHHH---H-B---TCEEEEEEESC--SSHHHHHHHHHHHHHHTTCTTSCCCCEEES------
T ss_pred CCCEEEEECCCC-CHHHHHHHH---H-C---CCEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECC------
T ss_conf 783589833773-099999999---6-6---98899999689--788999999999999975899847999767------
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHH
Q ss_conf 80378885455554320012344201234566656689999862365444332235764100357968710121042899
Q gi|254780546|r 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 (423)
Q Consensus 97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~ 176 (423)
..+.. ...+++.++..+.||-.....+-.. .++..-. ..-+..++|||+++.|+|
T Consensus 243 ~~~~~---------~~ia~~~~~~~ivtGeslgQVaSQt-~n~~~~~---------------~~~~~pi~RPLig~DK~E 297 (307)
T 1vbk_A 243 SFDRV---------LKLIRDFGVKGVIKGLRPNDLNSEV-SEITEDF---------------KMFPVPVYYPLIALPEEY 297 (307)
T ss_dssp SHHHH---------HHHHHHHTCCEEECCCCGGGCCTTC-HHHHHHH---------------HHCSSCEECHHHHSCHHH
T ss_pred CHHHH---------HHHHHHCCCCEEEECCCHHHHHHHH-HHHHHHH---------------HCCCCCCCCCCCCCCHHH
T ss_conf 68999---------9999984998999351525889999-9899998---------------415987024837899899
Q ss_pred HHHHHHHHCC
Q ss_conf 9998998189
Q gi|254780546|r 177 IRSFLLQRNI 186 (423)
Q Consensus 177 l~~~~~~~~i 186 (423)
|.+.+++.|+
T Consensus 298 Ii~~Ar~IGl 307 (307)
T 1vbk_A 298 IKSVKERLGL 307 (307)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
T ss_conf 9999998686