HHsearch results for GI: 254780546 and protein with PDBid: 1vbk_A

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=97.41  E-value=0.00031  Score=47.44  Aligned_cols=127  Identities=10%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCC
Q ss_conf             9839999669424899999999999864899729999996677987846899999999987189--88999975047877
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQT   96 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi--~~~~~~~~~~~~~~   96 (423)
                      ..++++-+|||- |-+-.+++-   + +   +.++..+|.++  .+.+.+-...+.+...++.-  .+++...+      
T Consensus       179 ~Gk~l~LlSGGi-SpVAa~~~m---K-R---G~~v~~v~f~~--~~~~~~kv~~l~~~l~~~~~~~~~~~~~~~------  242 (307)
T 1vbk_A          179 EGRMIGILHDEL-SALAIFLMM---K-R---GVEVIPVYIGK--DDKNLEKVRSLWNLLKRYSYGSKGFLVVAE------  242 (307)
T ss_dssp             TCEEEEECSSHH-HHHHHHHHH---H-B---TCEEEEEEESC--SSHHHHHHHHHHHHHHTTCTTSCCCCEEES------
T ss_pred             CCCEEEEECCCC-CHHHHHHHH---H-C---CCEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECC------
T ss_conf             783589833773-099999999---6-6---98899999689--788999999999999975899847999767------


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHH
Q ss_conf             80378885455554320012344201234566656689999862365444332235764100357968710121042899
Q gi|254780546|r   97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED  176 (423)
Q Consensus        97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~  176 (423)
                      ..+..         ...+++.++..+.||-.....+-.. .++..-.               ..-+..++|||+++.|+|
T Consensus       243 ~~~~~---------~~ia~~~~~~~ivtGeslgQVaSQt-~n~~~~~---------------~~~~~pi~RPLig~DK~E  297 (307)
T 1vbk_A          243 SFDRV---------LKLIRDFGVKGVIKGLRPNDLNSEV-SEITEDF---------------KMFPVPVYYPLIALPEEY  297 (307)
T ss_dssp             SHHHH---------HHHHHHHTCCEEECCCCGGGCCTTC-HHHHHHH---------------HHCSSCEECHHHHSCHHH
T ss_pred             CHHHH---------HHHHHHCCCCEEEECCCHHHHHHHH-HHHHHHH---------------HCCCCCCCCCCCCCCHHH
T ss_conf             68999---------9999984998999351525889999-9899998---------------415987024837899899


Q ss_pred             HHHHHHHHCC
Q ss_conf             9998998189
Q gi|254780546|r  177 IRSFLLQRNI  186 (423)
Q Consensus       177 l~~~~~~~~i  186 (423)
                      |.+.+++.|+
T Consensus       298 Ii~~Ar~IGl  307 (307)
T 1vbk_A          298 IKSVKERLGL  307 (307)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHCC
T ss_conf             9999998686