HHsearch results for GI: 254780546 and protein with PDBid: 1vl2_A

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.85  E-value=1.9e-08  Score=77.23  Aligned_cols=141  Identities=18%  Similarity=0.162  Sum_probs=96.4

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEEECCC----
Q ss_conf             983999966942489999999999986489972999999667798784689999999998718-988999975047----
Q gi|254780546|r   19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IAHSVVSWKNSK----   93 (423)
Q Consensus        19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg-i~~~~~~~~~~~----   93 (423)
                      ..||++|+|||.||++.+.+|++    .   +++|+++++|-|- +   +|.+.+++.+.++| ++|+++......    
T Consensus        14 k~KVvlAySGGLDTSv~l~~L~e----~---g~eVi~~~~d~Gq-~---ed~~~~~~kA~~~GA~~~~v~D~r~ef~~~~   82 (421)
T 1vl2_A           14 KEKVVLAYSGGLDTSVILKWLCE----K---GFDVIAYVANVGQ-K---DDFVAIKEKALKTGASKVYVEDLRREFVTDY   82 (421)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEESSC-C---CCHHHHHHHHHHHTCSEEEEEECHHHHHHHT
T ss_pred             CCEEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEEECCC-H---HHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf             37099993887489999999987----7---9979999997997-6---7789999999984996899986099999999


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             -------------87780378885455554320012344201234566--656689999862365444332235764100
Q gi|254780546|r   94 -------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTIL  158 (423)
Q Consensus        94 -------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~--dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~  158 (423)
                                   .-....+.+|-.-...+.+.+++.++..++-|.+-  +||+-     +...-       ..+.    
T Consensus        83 i~p~I~ana~ye~~Y~l~tslaRplia~~~v~~A~~~ga~~iaHG~TGkGNDQvR-----Fe~~~-------~aL~----  146 (421)
T 1vl2_A           83 IFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVR-----FELTY-------AALN----  146 (421)
T ss_dssp             HHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHH-----HHHHH-------HHHC----
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCH-----HHHHH-------HHHC----
T ss_conf             9999966887678653421111589999999999970874883365247775410-----77779-------8728----


Q ss_pred             CCCCCEEECCHHCC-------CHHHHHHHHHHHCCCC
Q ss_conf             35796871012104-------2899999899818932
Q gi|254780546|r  159 YDLNLWISRPFLRC-------RREDIRSFLLQRNISW  188 (423)
Q Consensus       159 ~~~~~~i~RPLL~~-------~r~~l~~~~~~~~i~w  188 (423)
                        .++.++-|.-..       +|++..+||+++||+.
T Consensus       147 --p~~~iiaP~R~~~~~~~~~~R~~~i~ya~~~gI~v  181 (421)
T 1vl2_A          147 --PNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPI  181 (421)
T ss_dssp             --TTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCC
T ss_pred             --CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf             --97631585666656542011999999999759997