HHsearch results for GI: 254780546 and protein with PDBid: 2c5s_A
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.76 E-value=6.8e-19 Score=151.11 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=134.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC------
Q ss_conf 98399996694248999999999998648997299999966779878468999999999871898899997504------
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------ 92 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~------ 92 (423)
..|++|++|||.||+++++++.. + +.++.++|++++-. .+.++.+.+.++|+.+++++........
T Consensus 187 ~gKvlvllSGGiDS~Vaa~ll~k----~---G~~v~~v~~~~~~~-~~~~~~e~v~~la~~l~~~~~~i~~~~~~~~~~~ 258 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----R---GVSVEAVHFHSPPF-TSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ 258 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----B---TEEEEEEEEECTTT-SCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHH----H---CCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHH
T ss_conf 78389999669608999999998----2---88636899756998-9978999999999981897211244662277888
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ------78778037888545555432001234420123456665668999986236544433223576410035796871
Q gi|254780546|r 93 ------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 (423)
Q Consensus 93 ------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~ 166 (423)
.+.....-.+++.+|..+...+.+.++..++|||+++|..++.+..+...+.. .+..++
T Consensus 259 ~~~~~~~~~~~~~~~~rr~~~~~a~~~A~~~g~~~I~tG~~~~d~~sq~l~nl~~~~~~---------------~~~~ii 323 (413)
T 2c5s_A 259 KTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEV---------------TNYPVI 323 (413)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGG---------------CCSCEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCC---------------CCCCCC
T ss_conf 87775446888322689999999999998557889998772686602678887651422---------------267641
Q ss_pred CCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0121042899999899818932026678642210189997643
Q gi|254780546|r 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 (423)
Q Consensus 167 RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~ 209 (423)
|||+++.|+||++++++.|+.++.+..+.|..+.++..+....
T Consensus 324 RPL~~~dK~EI~~~Ak~iGl~~is~~p~~~c~~~~~~~~p~t~ 366 (413)
T 2c5s_A 324 RPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATK 366 (413)
T ss_dssp CTTTTCCHHHHHHHHHHTTCHHHHTSCC--------------C
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCH
T ss_conf 4001699999999999849912322897444356457897540