HHsearch results for GI: 254780546 and protein with PDBid: 3k32_A
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=2.5e-23 Score=182.44 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=126.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--
Q ss_conf 799839999669424899999999999864899729999996677987846899999999987189889999750478--
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-- 94 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~-- 94 (423)
-+..+|+||+|||+||++|++++++. +.+++++|||||.++++ ++++.+|+.+|++|+++.++....
T Consensus 4 ~k~~kv~V~~SGG~DS~~la~ll~~~-------g~~v~~v~~~~~~~~~~----~~a~~~a~~lgi~~~~~~~~~~~~~~ 72 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKKL-------GYNPHLITINFGVIPSY----KLAEETAKILGFKHKVITLDRKIVEK 72 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHHT-------TEEEEEEEEECSSSCTT----HHHHHHHHHHTCEEEEEECCTHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCHHH----HHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 53370899955878999999999971-------99769999879951478----99999999969971898578999988
Q ss_pred -------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf -------7780378885455554320012344201234566656689999862365444332235764100357968710
Q gi|254780546|r 95 -------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 (423)
Q Consensus 95 -------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~R 167 (423)
.......++..+|..+...+ .++.+++||||+||++||++|++.++... ..++.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~i~tGh~~dD~~e~~~~~~~~~~~~--------------~~~~~~~r 136 (203)
T 3k32_A 73 AADMIIEHKYPGPAIQYVHKTVLEILA--DEYSILADGTRRDDRVPKLSYSEIQSLEM--------------RKNIQYIT 136 (203)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHT--TTCSEEECCCCTTCCSSCCCHHHHHHHHH--------------HHTCEEEC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCHHHHCCCHHHHHCCCCH--------------HHHHHCCC
T ss_conf 999998469824999999999999996--69999997288077754120877145202--------------21000025
Q ss_pred CHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf 121042899999899818932026678642210-18999764345
Q gi|254780546|r 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211 (423)
Q Consensus 168 PLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~-R~rlR~~l~~l 211 (423)
||++++|.+|+.|++++ +.|.++|||.++..+ ++.+|+.+.+.
T Consensus 137 PL~~~~k~ei~~~a~~~-~~~~~~~s~~~~~~~y~~~ir~~l~~~ 180 (203)
T 3k32_A 137 PLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKER 180 (203)
T ss_dssp GGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 33598999999999970-885668844576400789999999970