HHsearch results for GI: 254780546 and protein with PDBid: 3p52_A

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni}
Probab=99.14  E-value=5.5e-10  Score=88.09  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=104.2

Q ss_pred             HHHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999852---7998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r    7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA   83 (423)
Q Consensus         7 ~~~~~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~   83 (423)
                      +.+..|++.-   .+..+++||+|||.||++++.++++...      -++.+++++++..+  ..+.+.+.++|+.+||+
T Consensus        11 ~~i~~~i~~~~~~~g~~~vvlglSGGVDSsv~a~La~~al~------~~v~~v~~~~~~~~--~~~~~~a~~la~~lgi~   82 (249)
T 3p52_A           11 EKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALK------ENVFALLMPTQISN--KANLEDALRLCADLNLE   82 (249)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHT------TSEEEEECCSCCSS--CHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC------CCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
T ss_conf             99999999999992998299978898899999999998448------71799857841100--06899999999981776


Q ss_pred             EEEEEEECC-------CCCC---CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             899997504-------7877---803788854555543200123442012345666566899998623654443322357
Q gi|254780546|r   84 HSVVSWKNS-------KPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        84 ~~~~~~~~~-------~~~~---~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~  153 (423)
                      +.++..+..       ....   ..+....+.|...+...+...+...+.|++ .++..      .  |...        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~r~~~l~~~a~~~~~~v~~t~n-kse~~------~--G~~t--------  145 (249)
T 3p52_A           83 YKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELL------L--GYGT--------  145 (249)
T ss_dssp             EEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHH------H--TCSC--------
T ss_pred             CCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC-HHHHH------C--CCHH--------
T ss_conf             00000146888875100100046788999988789998766352855767885-55452------5--7322--------


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC--CCCCCCCC
Q ss_conf             6410035796871012104289999989981893--20266786
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPSNT  195 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~--wveDpSN~  195 (423)
                        .  ...+...+-|+-++.|.|+++.++..|++  +++-|.-.
T Consensus       146 --k--~gd~~~~~~Pl~~L~K~eVr~La~~lg~p~~ii~k~psa  185 (249)
T 3p52_A          146 --I--YGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSA  185 (249)
T ss_dssp             --T--TTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC----
T ss_pred             --H--HHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf             --3--531565200157978999999999969819870799996