Query gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 423
No_of_seqs 202 out of 4812
Neff 8.1
Searched_HMMs 23785
Date Tue May 31 20:03:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780546.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni5_A Putative cell cycle pro 100.0 0 0 426.2 35.0 323 14-345 8-341 (433)
2 3a2k_A TRNA(Ile)-lysidine synt 100.0 0 0 407.8 30.3 331 8-344 4-355 (464)
3 1wy5_A TILS, hypothetical UPF0 100.0 0 0 374.6 22.2 287 14-322 19-317 (317)
4 3k32_A Uncharacterized protein 99.9 2.5E-23 1.1E-27 182.4 8.2 167 17-211 4-180 (203)
5 2c5s_A THII, probable thiamine 99.8 6.8E-19 2.9E-23 151.1 7.3 168 19-209 187-366 (413)
6 2dpl_A GMP synthetase, GMP syn 99.6 1E-14 4.2E-19 121.6 11.3 170 12-198 13-192 (308)
7 2hma_A Probable tRNA (5-methyl 99.5 1.1E-14 4.7E-19 121.3 5.8 173 17-200 7-205 (376)
8 2der_A TRNA-specific 2-thiouri 99.5 5.9E-14 2.5E-18 116.2 6.0 173 15-199 13-212 (380)
9 2o8v_A Phosphoadenosine phosph 99.3 1.3E-11 5.4E-16 99.6 11.1 155 3-189 31-202 (252)
10 1sur_A PAPS reductase; assimil 99.3 1.3E-11 5.5E-16 99.6 10.7 160 2-189 29-201 (215)
11 2ywb_A GMP synthase [glutamine 99.2 1.3E-09 5.4E-14 85.5 13.8 160 14-188 204-373 (503)
12 3p52_A NH(3)-dependent NAD(+) 99.1 5.5E-10 2.3E-14 88.1 11.3 160 7-195 11-185 (249)
13 1zun_A Sulfate adenylyltransfe 99.1 2.9E-10 1.2E-14 90.1 9.7 168 16-189 43-225 (325)
14 1gpm_A GMP synthetase, XMP ami 99.1 1.8E-09 7.5E-14 84.5 12.6 161 14-187 222-394 (525)
15 1xng_A NH(3)-dependent NAD(+) 99.1 2E-09 8.6E-14 84.1 11.9 161 7-196 10-185 (268)
16 2vxo_A GMP synthase [glutamine 99.1 2.5E-10 1.1E-14 90.5 7.2 165 14-188 235-434 (697)
17 3fiu_A NH(3)-dependent NAD(+) 99.0 5.3E-09 2.2E-13 81.2 11.8 161 3-193 7-192 (249)
18 2pg3_A Queuosine biosynthesis 99.0 8.3E-09 3.5E-13 79.8 11.5 147 19-186 2-178 (232)
19 2oq2_A Phosphoadenosine phosph 98.9 1.4E-08 5.7E-13 78.3 10.3 158 4-189 29-207 (261)
20 3bl5_A Queuosine biosynthesis 98.9 1.2E-08 5.1E-13 78.6 9.1 147 19-186 3-175 (219)
21 1vl2_A Argininosuccinate synth 98.9 1.9E-08 8E-13 77.2 9.8 141 19-188 14-181 (421)
22 2e18_A NH(3)-dependent NAD(+) 98.8 2.2E-08 9.4E-13 76.7 10.0 149 9-188 13-172 (257)
23 2goy_A Adenosine phosphosulfat 98.8 7.7E-08 3.2E-12 72.9 11.9 166 2-189 39-216 (275)
24 2wsi_A FAD synthetase; transfe 98.8 3.7E-08 1.6E-12 75.2 9.6 147 19-189 53-214 (306)
25 3fwk_A FMN adenylyltransferase 98.8 4.4E-08 1.8E-12 74.7 9.3 144 19-189 58-217 (308)
26 2nz2_A Argininosuccinate synth 98.8 7E-08 3E-12 73.2 10.0 145 16-189 2-173 (413)
27 1k92_A Argininosuccinate synth 98.7 1.2E-07 5E-12 71.6 9.2 150 13-189 4-183 (455)
28 3dpi_A NAD+ synthetase; ssgcid 98.6 1.9E-07 8E-12 70.2 9.4 161 4-187 25-211 (285)
29 1kor_A Argininosuccinate synth 98.6 4.1E-07 1.7E-11 67.8 10.8 140 21-188 2-164 (400)
30 1wxi_A NH(3)-dependent NAD(+) 98.4 9.9E-06 4.2E-10 58.0 13.5 158 3-187 17-202 (275)
31 1kqp_A NAD+ synthase;, NH(3)-d 98.3 2.4E-05 1E-09 55.3 13.1 157 3-187 16-199 (271)
32 3n05_A NH(3)-dependent NAD(+) 97.9 4.7E-05 2E-09 53.3 8.7 138 17-185 324-473 (590)
33 1ct9_A Asparagine synthetase B 97.8 0.00017 7.2E-09 49.3 9.2 183 14-211 221-439 (553)
34 2d13_A Hypothetical protein PH 97.7 0.00048 2E-08 46.1 10.7 147 18-199 3-156 (227)
35 1q15_A CARA; CMPR, (2S,5S)-5-c 97.7 0.00015 6.3E-09 49.7 7.8 67 15-92 234-300 (503)
36 3dla_A Glutamine-dependent NAD 97.6 0.00029 1.2E-08 47.6 8.3 151 9-185 352-522 (680)
37 1jgt_A Beta-lactam synthetase; 97.6 0.00031 1.3E-08 47.5 7.8 174 15-211 237-433 (513)
38 1vbk_A Hypothetical protein PH 97.4 0.00031 1.3E-08 47.4 6.4 127 19-186 179-307 (307)
39 3ilv_A Glutamine-dependent NAD 96.8 0.0018 7.5E-08 42.1 5.4 146 16-185 300-499 (634)
40 1mjh_A Protein (ATP-binding do 92.1 0.26 1.1E-05 26.8 5.4 36 20-58 6-41 (162)
41 3mt0_A Uncharacterized protein 91.9 0.59 2.5E-05 24.2 7.5 99 16-131 4-102 (290)
42 2gm3_A Unknown protein; AT3G01 91.7 0.29 1.2E-05 26.4 5.4 104 17-133 3-139 (175)
43 2pfs_A USP, universal stress p 90.1 0.39 1.7E-05 25.5 4.8 99 19-132 6-123 (150)
44 1jmv_A USPA, universal stress 89.2 1 4.2E-05 22.6 6.4 94 20-128 3-112 (141)
45 3loq_A Universal stress protei 88.3 1.1 4.8E-05 22.2 9.5 68 16-86 19-104 (294)
46 3hgm_A Universal stress protei 86.7 1.2 4.9E-05 22.2 5.4 96 20-128 3-120 (147)
47 2z08_A Universal stress protei 86.4 1.5 6.1E-05 21.5 5.8 37 20-59 3-39 (137)
48 3olq_A Universal stress protei 84.5 1.8 7.5E-05 20.9 6.2 99 17-130 5-123 (319)
49 3idf_A USP-like protein; unive 76.6 3.2 0.00013 19.1 6.9 68 20-89 2-87 (138)
50 2o0m_A Transcriptional regulat 75.4 3.4 0.00014 18.8 5.2 16 72-87 97-112 (345)
51 3nbm_A PTS system, lactose-spe 75.1 3.5 0.00015 18.8 7.6 71 17-88 4-85 (108)
52 2l2q_A PTS system, cellobiose- 74.3 3.3 0.00014 19.0 4.1 69 20-89 5-84 (109)
53 3da8_A Probable 5'-phosphoribo 72.6 4 0.00017 18.4 6.9 88 17-126 10-97 (215)
54 3dlo_A Universal stress protei 67.9 5 0.00021 17.7 8.5 95 20-129 25-128 (155)
55 1ng7_A Poliovirus 3A-N, genome 65.5 2.2 9.2E-05 20.2 1.6 30 169-202 26-56 (60)
56 1y89_A DEVB protein; structura 64.0 5.2 0.00022 17.5 3.3 71 12-84 21-96 (238)
57 3o1l_A Formyltetrahydrofolate 62.1 6.3 0.00027 17.0 7.3 59 17-89 103-161 (302)
58 2px0_A Flagellar biosynthesis 59.8 6.9 0.00029 16.7 5.9 58 22-86 109-166 (296)
59 1qzu_A Hypothetical protein MD 59.2 7.1 0.0003 16.6 4.4 51 4-57 4-54 (206)
60 1tq8_A Hypothetical protein RV 58.7 7.2 0.0003 16.6 9.1 100 16-130 14-131 (163)
61 3eb9_A 6-phosphogluconolactona 56.7 7.7 0.00033 16.3 5.6 48 15-62 31-78 (266)
62 2bkx_A Glucosamine-6-phosphate 56.7 7.7 0.00033 16.3 3.4 72 13-84 21-96 (242)
63 1rz3_A Hypothetical protein rb 55.4 8.1 0.00034 16.2 5.9 55 7-64 8-64 (201)
64 3ico_A 6PGL, 6-phosphogluconol 54.0 8.5 0.00036 16.0 3.5 68 15-84 50-120 (268)
65 1sbz_A Probable aromatic acid 53.7 8.6 0.00036 16.0 4.7 33 21-56 2-34 (197)
66 2okg_A Central glycolytic gene 53.3 8.7 0.00037 16.0 4.1 59 72-131 12-71 (255)
67 2qv5_A AGR_C_5032P, uncharacte 52.8 8.9 0.00037 15.9 3.8 141 52-209 31-179 (261)
68 1sq5_A Pantothenate kinase; P- 49.7 9.9 0.00042 15.6 5.3 59 7-66 66-126 (308)
69 1qox_A Beta-glucosidase; hydro 47.9 6 0.00025 17.1 1.4 57 74-130 64-123 (449)
70 1e2b_A Enzyme IIB-cellobiose; 47.5 11 0.00045 15.4 4.9 39 19-58 3-41 (106)
71 1vff_A Beta-glucosidase; glyco 46.5 6.5 0.00027 16.9 1.5 58 74-131 56-115 (423)
72 1gnx_A Beta-glucosidase; hydro 46.3 6.2 0.00026 17.0 1.3 57 74-130 77-136 (479)
73 1odf_A YGR205W, hypothetical 3 46.0 11 0.00047 15.2 3.3 44 17-60 27-72 (290)
74 3oc6_A 6-phosphogluconolactona 45.3 12 0.00048 15.1 3.0 68 15-84 34-104 (248)
75 2b8n_A Glycerate kinase, putat 44.9 12 0.00049 15.1 2.5 42 3-46 34-75 (429)
76 3g23_A Peptidase U61, LD-carbo 44.0 12 0.0005 15.0 4.2 11 23-33 8-18 (274)
77 3do6_A Formate--tetrahydrofola 42.3 13 0.00054 14.8 3.7 22 125-146 289-310 (543)
78 2e9l_A Cytosolic beta-glucosid 42.1 8.1 0.00034 16.2 1.4 57 75-131 64-124 (469)
79 3f5l_A Beta-glucosidase; beta- 41.9 9.5 0.0004 15.7 1.7 57 75-131 80-139 (481)
80 2o9p_A Beta-glucosidase B; fam 41.7 7.4 0.00031 16.5 1.1 58 74-131 73-132 (454)
81 3gnp_A OS03G0212800 protein; b 41.6 8.5 0.00036 16.1 1.4 58 74-131 76-136 (488)
82 1e4i_A Beta-glucosidase; glyco 41.3 8.7 0.00037 16.0 1.4 57 74-130 64-123 (447)
83 1rvg_A Fructose-1,6-bisphospha 41.2 13 0.00056 14.7 5.8 163 7-191 28-208 (305)
84 3ahz_A Beta-glucosidase; cellu 40.8 8.8 0.00037 16.0 1.4 58 74-131 72-133 (487)
85 3lwd_A 6-phosphogluconolactona 40.8 13 0.00056 14.7 4.8 47 14-64 27-73 (226)
86 2j78_A Beta-glucosidase A; fam 40.8 9.5 0.0004 15.7 1.6 57 74-130 87-146 (468)
87 1v08_A Beta-glucosidase; glyco 40.0 9.8 0.00041 15.6 1.5 57 74-130 84-145 (512)
88 1x3l_A Hypothetical protein PH 39.0 14 0.0006 14.5 4.1 40 3-43 21-71 (440)
89 2dga_A Beta-glucosidase; alpha 38.4 10 0.00043 15.5 1.4 58 74-131 134-194 (565)
90 3gjz_A Microcin immunity prote 38.3 15 0.00061 14.4 2.4 67 14-85 8-83 (336)
91 3ahx_A Beta-glucosidase A; cel 37.8 11 0.00047 15.2 1.6 58 74-131 65-125 (453)
92 1cxq_A Avian sarcoma virus int 37.7 15 0.00063 14.3 3.1 53 27-87 46-98 (162)
93 3hn6_A Glucosamine-6-phosphate 37.3 15 0.00063 14.3 5.8 67 18-84 52-122 (289)
94 1mvl_A PPC decarboxylase athal 37.3 15 0.00063 14.3 4.3 40 15-59 15-54 (209)
95 1zl0_A Hypothetical protein PA 36.8 13 0.00056 14.7 1.8 22 20-41 18-40 (311)
96 3lqk_A Dipicolinate synthase s 36.7 15 0.00065 14.2 4.9 57 17-77 5-67 (201)
97 2dum_A Hypothetical protein PH 36.6 15 0.00065 14.2 5.7 36 20-58 6-41 (170)
98 1rli_A Trp repressor binding p 36.4 16 0.00065 14.2 3.7 12 55-66 6-17 (184)
99 1e4m_M Myrosinase; hydrolase, 36.3 14 0.00057 14.6 1.8 56 75-130 84-144 (501)
100 3aez_A Pantothenate kinase; tr 36.3 16 0.00066 14.2 5.0 47 19-66 88-136 (312)
101 3ahy_A Beta-glucosidase; cellu 36.1 12 0.00051 15.0 1.5 57 74-130 68-129 (473)
102 3hvi_A Catechol O-methyltransf 36.0 16 0.00066 14.2 3.3 72 1-89 40-115 (221)
103 1ne7_A Glucosamine-6-phosphate 36.0 16 0.00066 14.2 6.2 70 16-85 28-102 (289)
104 1p3y_1 MRSD protein; flavoprot 35.8 16 0.00067 14.1 3.7 36 18-57 7-42 (194)
105 1ug6_A Beta-glycosidase; gluco 35.5 12 0.00051 15.0 1.4 57 74-130 63-122 (431)
106 1cbg_A Cyanogenic beta-glucosi 35.4 11 0.00047 15.2 1.2 56 74-129 79-139 (490)
107 2e3z_A Beta-glucosidase; TIM b 35.4 13 0.00053 14.8 1.5 56 75-130 69-129 (465)
108 1x92_A APC5045, phosphoheptose 35.2 16 0.00068 14.1 4.9 36 8-44 34-69 (199)
109 1wcg_A Thioglucosidase, myrosi 35.0 12 0.00051 14.9 1.4 58 74-131 65-126 (464)
110 3c8u_A Fructokinase; YP_612366 34.6 17 0.0007 14.0 6.7 60 2-64 1-64 (208)
111 1dos_A Aldolase class II; lyas 33.2 17 0.00073 13.9 9.2 174 7-187 40-255 (358)
112 2kw5_A SLR1183 protein; struct 32.8 18 0.00074 13.8 5.5 151 3-187 15-166 (202)
113 3mcu_A Dipicolinate synthase, 32.7 18 0.00075 13.8 3.8 39 18-60 4-43 (207)
114 2jf7_A Strictosidine-O-beta-D- 32.4 14 0.00061 14.4 1.4 56 74-129 103-163 (532)
115 1v02_A Dhurrinase, dhurrinase- 32.1 16 0.00066 14.2 1.5 57 74-130 136-197 (565)
116 3nwp_A 6-phosphogluconolactona 31.6 18 0.00077 13.7 3.5 46 15-64 32-77 (233)
117 3bzy_B ESCU; auto cleavage pro 30.5 19 0.00079 13.6 1.7 20 174-193 29-48 (83)
118 2i2w_A Phosphoheptose isomeras 30.5 19 0.00081 13.5 5.9 35 9-44 54-88 (212)
119 2gnp_A Transcriptional regulat 30.1 19 0.00082 13.5 5.2 74 10-90 48-123 (266)
120 3nrb_A Formyltetrahydrofolate 30.0 20 0.00082 13.5 9.4 89 17-127 86-174 (287)
121 2vt1_B Surface presentation of 29.9 20 0.00082 13.5 1.7 20 174-193 29-48 (93)
122 2jn4_A Hypothetical protein FI 29.9 20 0.00083 13.5 2.3 51 303-355 20-70 (87)
123 2d7d_A Uvrabc system protein B 29.4 20 0.00084 13.4 3.5 37 6-42 18-56 (661)
124 1fs5_A Glucosamine-6-phosphate 29.2 20 0.00085 13.4 5.7 66 20-85 33-102 (266)
125 3lou_A Formyltetrahydrofolate 28.9 20 0.00086 13.4 7.5 59 17-89 93-151 (292)
126 3fj0_A Beta-glucosidase; BGLB, 28.6 18 0.00078 13.7 1.4 57 75-131 86-145 (465)
127 1pbg_A PGAL, 6-phospho-beta-D- 28.5 18 0.00077 13.7 1.4 58 74-131 60-120 (468)
128 3fg9_A Protein of universal st 28.0 21 0.00089 13.3 8.4 99 17-129 13-130 (156)
129 2yva_A DNAA initiator-associat 26.3 23 0.00095 13.1 5.8 36 9-45 31-66 (196)
130 2ejb_A Probable aromatic acid 26.0 23 0.00096 13.0 5.3 34 20-57 2-35 (189)
131 1vl1_A 6PGL, 6-phosphogluconol 25.6 23 0.00097 13.0 3.7 67 14-84 39-108 (232)
132 2oga_A Transaminase; PLP-depen 25.5 23 0.00098 13.0 2.1 26 174-199 167-192 (399)
133 1t0k_B YL32, RP73, 60S ribosom 24.8 22 0.00091 13.2 1.2 21 66-86 49-69 (105)
134 2osx_A Endoglycoceramidase II; 24.4 24 0.001 12.8 2.5 55 73-127 71-127 (481)
135 2mas_A Inosine-uridine nucleos 24.4 24 0.001 12.8 7.2 58 20-85 2-63 (314)
136 2jlj_A YSCU, YOP proteins tran 23.5 25 0.0011 12.7 1.7 24 171-194 79-102 (144)
137 3bzs_A ESCU; auto cleavage pro 23.1 26 0.0011 12.6 1.7 24 171-194 80-103 (137)
138 3c01_E Surface presentation of 22.9 26 0.0011 12.6 1.7 21 173-193 28-48 (98)
139 1q77_A Hypothetical protein AQ 22.6 26 0.0011 12.6 4.9 39 18-59 3-41 (138)
140 3frk_A QDTB; aminotransferase, 22.5 26 0.0011 12.6 1.9 23 175-197 141-163 (373)
141 1w41_A 50S ribosomal protein L 22.5 26 0.0011 12.6 1.3 21 67-87 44-64 (101)
142 1rj9_A FTSY, signal recognitio 22.2 27 0.0011 12.5 8.7 56 22-85 106-161 (304)
143 3gk5_A Uncharacterized rhodane 22.0 27 0.0011 12.5 3.8 36 5-40 41-76 (108)
144 1rvk_A Isomerase/lactonizing e 21.9 27 0.0011 12.5 2.6 33 177-209 219-251 (382)
145 1qvb_A Beta-glycosidase; TIM-b 21.6 28 0.0012 12.4 2.0 57 74-130 66-154 (481)
146 2jli_A YSCU, YOP proteins tran 21.1 28 0.0012 12.4 1.7 23 172-194 71-93 (123)
147 1tk9_A Phosphoheptose isomeras 20.8 29 0.0012 12.3 5.9 37 8-45 31-67 (188)
148 1jjf_A Xylanase Z, endo-1,4-be 20.4 19 0.00079 13.6 0.2 15 262-276 244-258 (268)
149 1gmx_A GLPE protein; transfera 20.4 29 0.0012 12.3 4.9 37 5-41 44-80 (108)
150 1eg7_A Formyltetrahydrofolate 20.0 30 0.0012 12.2 2.6 22 125-146 303-324 (557)
No 1
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=0 Score=426.22 Aligned_cols=323 Identities=23% Similarity=0.291 Sum_probs=253.4
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~ 93 (423)
+++..+.+|+||||||+|||||||+++++.... .++++.|+|||||+|++|++|+++|+++|+++|||+++.+++..+
T Consensus 8 ~~~~~~~~vlva~SGG~DS~~ll~~l~~~~~~~--~~~~~~~~h~~h~~r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~ 85 (433)
T 1ni5_A 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQ 85 (433)
T ss_dssp HHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS--TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCCC
T ss_pred HHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 325899829999818099999999999989758--998199999829889557999999999999759978999996478
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf 87780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r 94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 (423)
Q Consensus 94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~ 173 (423)
++.++|++||..||..+...+ .++.+++||||+|||+||++|+++||+|+.|+ .||++.+ ...++.++||||.++
T Consensus 86 ~~~~~e~~aR~~Ry~~~~~~~--~~~~~i~~aHh~dD~~Et~l~~l~rg~~~~gl--~~~~~~~-~~~~~~i~RPlL~~~ 160 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSGPAGL--SAMAEVS-EFAGTRLIRPLLART 160 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTC--CTTEEEECCCCHHHHHHHHHHHHTTTCCTTGG--GCCCSEE-EETTEEEECGGGSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHH--CCCCEEEEEEECHHHHHHHHHHHHCCCCCCCC--CCCCCEE-CCCCCEEEEECCCCC
T ss_conf 888879999999999878654--16570322001103899999987257764334--3432221-157850887500186
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCE
Q ss_conf 899999899818932026678642210189997643453100---667799999999997999999999884004-4997
Q gi|254780546|r 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVH-MRSI 249 (423)
Q Consensus 174 r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~---l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~ 249 (423)
|+||++||++++++|+|||||.|++|+||++|+.+.|+..+. +.....++..............+....... ....
T Consensus 161 k~ei~~y~~~~~i~~~eD~SN~d~~y~RN~IR~~iiP~l~~~~p~~~~~i~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~ 240 (433)
T 1ni5_A 161 RGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQG 240 (433)
T ss_dssp HHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998746776203667776113378888875304444371699999999999999999999999999986006787
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC---CCCCEEECCCEEEEEECCEEEEEECCCCCC
Q ss_conf 99847783375578989999999998358999988999999999866---998456107579998899899984534377
Q gi|254780546|r 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~r~l~~~l~~~~g~~~~p~~~~l~~ll~~l~~---~~~~~~tl~g~~i~~~~~~l~i~RE~~~~~ 326 (423)
......+..++...+.++++.|+...+ .+.|+..++.+++..+.. +.+.....+++.+.++++.+++.++....+
T Consensus 241 ~l~~~~l~~l~~~~~~~vl~~~l~~~~--~~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 318 (433)
T 1ni5_A 241 TLQIVPMLAMSDARRAAIIRRWLAGQN--APMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQS 318 (433)
T ss_dssp CEESGGGTTSCHHHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHTTTSCGGGCCEEEETTEEEEESSSEEEEEECCCCCT
T ss_pred EEEHHHHHHCCHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCEEEEEECCCCCC
T ss_conf 575686431789999999999999669--999988999999999975244677277558999999899999981577754
Q ss_pred CCC----CCCCCCEEECCCEEEE
Q ss_conf 552----3689823207841751
Q gi|254780546|r 327 TLI----LYPEETTVWDGRYQFQ 345 (423)
Q Consensus 327 ~~~----~~~~~~~~wDgR~~i~ 345 (423)
... .......+++|.+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ 341 (433)
T 1ni5_A 319 ENIVPWQTWLQPLELPAGLGSVQ 341 (433)
T ss_dssp TCEEECTTTTSCEECSTTCCEEE
T ss_pred CCCCCCCCCCCCEECCCCCCEEE
T ss_conf 43453223554224258873799
No 2
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=0 Score=407.82 Aligned_cols=331 Identities=23% Similarity=0.287 Sum_probs=253.5
Q ss_pred HHHHHHH---HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998---52799839999669424899999999999864899729999996677987-8468999999999871898
Q gi|254780546|r 8 SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 8 ~~~~~~~---~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~~e~~~v~~~~~~lgi~ 83 (423)
.|++|+. ++..+++|+||||||+|||||||+++.+.... +++++|+|||||+|+ +|++|+++|+++|.++||+
T Consensus 4 ~~~~~i~~~~l~~~~~~v~va~SGG~DS~~Ll~~l~~~~~~~---~~~~~~~hvnh~lr~~~s~~~~~~~~~~~~~~~i~ 80 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW---KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRIL 80 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT---TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999999973899983989999807199999999999988972---98599999779899866699999999999984991
Q ss_pred EEEEEEEC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999750----47877803788854555543200123442012345666566899998623654443322357641003
Q gi|254780546|r 84 HSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 (423)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~ 159 (423)
+++.+++. ..++.++|+.||..||..+...+++.++.+++||||+|||+||++|++.||+|+.|+ .+|.+. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~e~~aR~~Ry~~~~~~~~~~~~~~i~~aHh~dD~~ET~l~~l~rg~~~~gl--~~~~~~-~~ 157 (464)
T 3a2k_A 81 CETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVK-RP 157 (464)
T ss_dssp EEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSST--TCSCSE-EE
T ss_pred EEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCC--CCCCCC-CC
T ss_conf 999998600110258989899999999876412333456315875420475899999875431001233--455321-33
Q ss_pred CCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_conf 57968710121042899999899818932026678642210189997643453100-------66779999999999799
Q gi|254780546|r 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNN 232 (423)
Q Consensus 160 ~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~-------l~~~~~~~~~~~~~l~~ 232 (423)
..++.++||||.++|+||++||+.++++|++||||.|+.|+||++|+.+.|.+... +...+..+......++.
T Consensus 158 ~~~~~~iRPll~~~k~ei~~y~~~~~l~~~~D~sN~~~~~~RN~iR~~ilp~l~~~~p~~~~~l~~~~~~~~~~~~~l~~ 237 (464)
T 3a2k_A 158 FHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEE 237 (464)
T ss_dssp CSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34565778999757999999999848986668997677025467897535044332626999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCC-CEEECC-CEEE
Q ss_conf 99999998840044997998477833755789899999999983589-99988999999999866998-456107-5799
Q gi|254780546|r 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSMERVMLFLKSGKR-GCVSIG-RVVI 309 (423)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~l~~~~g~~-~~p~~~~l~~ll~~l~~~~~-~~~tl~-g~~i 309 (423)
.+...+.++..............+..++.+.+.++++.|+...++.. +..+..++..++..+.+++. ....+. ++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ll~~~l~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~i~l~~~~~~ 317 (464)
T 3a2k_A 238 LAADALNKVMEKQHRDAALSIGPFLELPRPLQRRVLQLLLLRLYGGVPPTLTSVHIGHILMLCERGRPSGMIDLPKGLKV 317 (464)
T ss_dssp HHHHHHHTTEECSSSSCEECHHHHHHSCHHHHHHHHHHHHHHTTSCCTTCCHHHHHHHHHHHHHCSCSEEEEECSTTCEE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEE
T ss_conf 99999998654415760453999986999999999999999862876732788888999999861676723993799689
Q ss_pred EEECCEEEEE-ECCCCCCC--CCCCCCCCEEECCCEEE
Q ss_conf 9889989998-45343775--52368982320784175
Q gi|254780546|r 310 DRRANFLWIT-RAVRNLPT--LILYPEETTVWDGRYQF 344 (423)
Q Consensus 310 ~~~~~~l~i~-RE~~~~~~--~~~~~~~~~~wDgR~~i 344 (423)
.+..+.+.+. .+....+. ..+..+....|++.+.+
T Consensus 318 ir~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (464)
T 3a2k_A 318 IRSYDRCLFTFDAESGEKGYWFELPVPALLPLPNGYAI 355 (464)
T ss_dssp EEETTEEEEESSCCCCCCCCEEEECSSEEEEETTTEEE
T ss_pred EEECCCEEEEECCCCCCCCCEEECCCCCEEECCCCCEE
T ss_conf 99869189994466666650564267734763898266
No 3
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=0 Score=374.65 Aligned_cols=287 Identities=22% Similarity=0.275 Sum_probs=222.2
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-
Q ss_conf 8527998399996694248999999999998648997299999966779878468999999999871898899997504-
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS- 92 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~- 92 (423)
+.+.+.+||+||||||+|||+|||+++.+....+. ..+.++|||||+|++|+.|+++|+++|+++||++++.+++..
T Consensus 19 ~l~~~~~kvlva~SGG~DS~~Ll~~l~~l~~~~~~--~~i~~~hv~h~~r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~ 96 (317)
T 1wy5_A 19 KIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSL--KEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRA 96 (317)
T ss_dssp CSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTC--SEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHH
T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 46799785999981829999999999999987799--8099999618999755999999999999606242211023443
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCH
Q ss_conf ---78778037888545555432001234420123456665668999986236544433223576410035796871012
Q gi|254780546|r 93 ---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 (423)
Q Consensus 93 ---~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPL 169 (423)
.+..+.++.||..||..+...+.+.++.+++||||+|||+||++|++.+|+|+.|+ ++|.+.. ..++|||
T Consensus 97 ~~~~~~~~~e~~aR~~Ry~~l~~~~~~~~~~~i~~gHh~dD~~ET~l~~l~rG~~~~gl--~~~~~~~-----~~i~RPL 169 (317)
T 1wy5_A 97 FAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGL--IGFLPKE-----EVIRRPL 169 (317)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHH--HCSCSEE-----TTEECTT
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCC--CCCCCCC-----CCCCCHH
T ss_conf 11479988789999999988553234312664676130122888999887428776788--7766543-----3216604
Q ss_pred HCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10428999998998189320266786422101899976434531---006----67799999999997999999999884
Q gi|254780546|r 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HAL----YLKMKKFQDLRVKVNNAVAMLIPKYL 242 (423)
Q Consensus 170 L~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~---~~l----~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (423)
|.++|++|++||+.++++|++||||.|+.|.||++|+.+.|.++ +++ ...+..+......++..+...+...
T Consensus 170 l~~~k~ei~~y~~~~~i~~~~D~sN~~~~~~Rn~iR~~llp~le~~~p~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~- 248 (317)
T 1wy5_A 170 YYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEV- 248 (317)
T ss_dssp TTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 4177999999999759997889989986330999999999999986711999999999999999999999999999971-
Q ss_pred CCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECC-CEEEEEECCEEEEEEC
Q ss_conf 004499799847783375578989999999998358999988999999999866998456107-5799988998999845
Q gi|254780546|r 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVIDRRANFLWITRA 321 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~r~l~~~l~~~~g~~~~p~~~~l~~ll~~l~~~~~~~~tl~-g~~i~~~~~~l~i~RE 321 (423)
..+.......+..++.+.+.++++.|+ +. +...+++.+...+.. ++..+++ |+.+.+.++.|++.+|
T Consensus 249 ---~~~~~l~~~~l~~l~~~~~~~ll~~~l---~~----~~~~~~~~i~~ll~~--~~~~~l~~~~~i~~~~~~l~~~pE 316 (317)
T 1wy5_A 249 ---KKGNCLDVKKLKEKPLALQRRVIRKFI---GE----KDYEKVELVRSLLEK--GGEVNLGKGKVLKRKERWLCFSPE 316 (317)
T ss_dssp ---EETTEECHHHHTTSCHHHHHHHHHHHH---TC----CCHHHHHHHHGGGTS--CCEEESSSEEEEETTEEBC-----
T ss_pred ---CCCCEECHHHHHCCCHHHHHHHHHHHH---HC----CCCCHHHHHHHHHHC--CCCEECCCCEEEEEECCEEEEEEC
T ss_conf ---458848589996599999999999998---54----896699999999855--998992895799998999999838
Q ss_pred C
Q ss_conf 3
Q gi|254780546|r 322 V 322 (423)
Q Consensus 322 ~ 322 (423)
.
T Consensus 317 ~ 317 (317)
T 1wy5_A 317 V 317 (317)
T ss_dssp -
T ss_pred C
T ss_conf 8
No 4
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=2.5e-23 Score=182.44 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=126.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--
Q ss_conf 799839999669424899999999999864899729999996677987846899999999987189889999750478--
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-- 94 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~-- 94 (423)
-+..+|+||+|||+||++|++++++. +.+++++|||||.++++ ++++.+|+.+|++|+++.++....
T Consensus 4 ~k~~kv~V~~SGG~DS~~la~ll~~~-------g~~v~~v~~~~~~~~~~----~~a~~~a~~lgi~~~~~~~~~~~~~~ 72 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKKL-------GYNPHLITINFGVIPSY----KLAEETAKILGFKHKVITLDRKIVEK 72 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHHT-------TEEEEEEEEECSSSCTT----HHHHHHHHHHTCEEEEEECCTHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCHHH----HHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 53370899955878999999999971-------99769999879951478----99999999969971898578999988
Q ss_pred -------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf -------7780378885455554320012344201234566656689999862365444332235764100357968710
Q gi|254780546|r 95 -------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 (423)
Q Consensus 95 -------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~R 167 (423)
.......++..+|..+...+ .++.+++||||+||++||++|++.++... ..++.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~i~tGh~~dD~~e~~~~~~~~~~~~--------------~~~~~~~r 136 (203)
T 3k32_A 73 AADMIIEHKYPGPAIQYVHKTVLEILA--DEYSILADGTRRDDRVPKLSYSEIQSLEM--------------RKNIQYIT 136 (203)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHT--TTCSEEECCCCTTCCSSCCCHHHHHHHHH--------------HHTCEEEC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCHHHHCCCHHHHHCCCCH--------------HHHHHCCC
T ss_conf 999998469824999999999999996--69999997288077754120877145202--------------21000025
Q ss_pred CHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf 121042899999899818932026678642210-18999764345
Q gi|254780546|r 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211 (423)
Q Consensus 168 PLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~-R~rlR~~l~~l 211 (423)
||++++|.+|+.|++++ +.|.++|||.++..+ ++.+|+.+.+.
T Consensus 137 PL~~~~k~ei~~~a~~~-~~~~~~~s~~~~~~~y~~~ir~~l~~~ 180 (203)
T 3k32_A 137 PLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKER 180 (203)
T ss_dssp GGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 33598999999999970-885668844576400789999999970
No 5
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.76 E-value=6.8e-19 Score=151.11 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=134.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC------
Q ss_conf 98399996694248999999999998648997299999966779878468999999999871898899997504------
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------ 92 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~------ 92 (423)
..|++|++|||.||+++++++.. + +.++.++|++++-. .+.++.+.+.++|+.+++++........
T Consensus 187 ~gKvlvllSGGiDS~Vaa~ll~k----~---G~~v~~v~~~~~~~-~~~~~~e~v~~la~~l~~~~~~i~~~~~~~~~~~ 258 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----R---GVSVEAVHFHSPPF-TSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ 258 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----B---TEEEEEEEEECTTT-SCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHH----H---CCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHH
T ss_conf 78389999669608999999998----2---88636899756998-9978999999999981897211244662277888
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ------78778037888545555432001234420123456665668999986236544433223576410035796871
Q gi|254780546|r 93 ------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 (423)
Q Consensus 93 ------~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~ 166 (423)
.+.....-.+++.+|..+...+.+.++..++|||+++|..++.+..+...+.. .+..++
T Consensus 259 ~~~~~~~~~~~~~~~~rr~~~~~a~~~A~~~g~~~I~tG~~~~d~~sq~l~nl~~~~~~---------------~~~~ii 323 (413)
T 2c5s_A 259 KTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEV---------------TNYPVI 323 (413)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGG---------------CCSCEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCC---------------CCCCCC
T ss_conf 87775446888322689999999999998557889998772686602678887651422---------------267641
Q ss_pred CCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0121042899999899818932026678642210189997643
Q gi|254780546|r 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 (423)
Q Consensus 167 RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~ 209 (423)
|||+++.|+||++++++.|+.++.+..+.|..+.++..+....
T Consensus 324 RPL~~~dK~EI~~~Ak~iGl~~is~~p~~~c~~~~~~~~p~t~ 366 (413)
T 2c5s_A 324 RPLITMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATK 366 (413)
T ss_dssp CTTTTCCHHHHHHHHHHTTCHHHHTSCC--------------C
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCH
T ss_conf 4001699999999999849912322897444356457897540
No 6
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A
Probab=99.60 E-value=1e-14 Score=121.61 Aligned_cols=170 Identities=17% Similarity=0.147 Sum_probs=119.0
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 99852799839999669424899999999999864899729999996677987846899999999987189889999750
Q gi|254780546|r 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN 91 (423)
Q Consensus 12 ~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~ 91 (423)
+++...+..+++||+|||+||++++.++++... .+++++++|+|+-+.. +..+.+...+..+|+++.++....
T Consensus 13 ~Ir~~vg~~kVvvalSGGVDSsV~A~L~~kAlG------d~v~aV~~d~g~~r~~-E~~~~~~~~~~~~gi~~~~vd~~~ 85 (308)
T 2dpl_A 13 EIRETVGDSKAIIALSGGVDSSTAAVLAHKAIG------DRLHAVFVNTGFLRKG-EPEFVVKTFRDEFGMNLHYVDAQD 85 (308)
T ss_dssp HHHHHHTTSCEEEECCSSHHHHHHHHHHHHHHG------GGEEEEEEECSCCCTT-HHHHHHHHHTTTTCCEEEEEECHH
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC------CCEEEEEECCCCCCCC-HHHHHHHHHHHCCCCCCEEEECHH
T ss_conf 999984899899990488999999999999738------8689999478878812-799999866402586507996789
Q ss_pred C-----CCCCCC---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4-----787780---37888545555432001234420123456665668999986236544433223576410035796
Q gi|254780546|r 92 S-----KPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 (423)
Q Consensus 92 ~-----~~~~~~---~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~ 163 (423)
. +...+- ...+...++..+...+++.++.++++||+.+|..|+-. |.+...-.|.. ......
T Consensus 86 ~~~~~l~gv~~pe~k~~~~~~~~~~~l~~~A~~~g~~~l~~Gt~~~D~~E~~~-------gikt~~~~Ggl---~~~~~~ 155 (308)
T 2dpl_A 86 RFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG-------KIKSHHNVGGL---PEKLNL 155 (308)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC-------------------------------CCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCC-------CEEEEECCCCC---CHHHCC
T ss_conf 87776528899589762760899999999999839958513402042554135-------32676157886---265354
Q ss_pred EEECCHHCCCHHHHHHHHHHHCCC--CCCCCCCCCCC
Q ss_conf 871012104289999989981893--20266786422
Q gi|254780546|r 164 WISRPFLRCRREDIRSFLLQRNIS--WCEDPSNTDDR 198 (423)
Q Consensus 164 ~i~RPLL~~~r~~l~~~~~~~~i~--wveDpSN~d~~ 198 (423)
.++-||-++.|+|+|+.+++.|++ +++-|+-..+-
T Consensus 156 ~~iePL~~L~K~EVR~la~~LGlP~~i~~K~P~pgpg 192 (308)
T 2dpl_A 156 KLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFPGPG 192 (308)
T ss_dssp EEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCCTTG
T ss_pred CHHHHHHHHCHHHHHHHHHHHCCCHHHHCCCCCCCCC
T ss_conf 4123788745699999999809998992889998501
No 7
>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.52 E-value=1.1e-14 Score=121.27 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=120.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC------CCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 79983999966942489999999999986489972999999667798------784689999999998718988999975
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR------ETAKDEVRYVSDVCSRLRIAHSVVSWK 90 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr------~~s~~e~~~v~~~~~~lgi~~~~~~~~ 90 (423)
+...||+||+|||+||++-+++|++- +++|+.+|+...-. ..+.++...++++|+.|||||+++...
T Consensus 7 ~~k~rV~v~mSGGVDSsvaA~LL~~~-------G~~V~gv~m~~~~~~~~~~~c~~~~d~~da~~va~~LgIp~~~~d~~ 79 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKEQ-------GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFE 79 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHHT-------TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 87688999926879999999999977-------99579999978778777787783788999999999859988996508
Q ss_pred CC---------------CCCCCCHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHHHHHHHCCCCC--C-CCCC
Q ss_conf 04---------------7877803788-854555543200123442012345666566-8999986236544--4-3322
Q gi|254780546|r 91 NS---------------KPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQL-ETVYMRSQRDYAE--K-GMGL 150 (423)
Q Consensus 91 ~~---------------~~~~~~~~~a-r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~-Et~l~rl~r~sg~--~-g~~l 150 (423)
.. -.++|-.-.+ +.....++.+.+.+.++.+++|||.+--.. ++--..+.++.-. + .--|
T Consensus 80 ~~f~~~V~~~f~~~y~~G~TPNPcv~CN~~IKF~~l~~~a~~~g~d~iATGHYAri~~~~~g~~~L~r~~D~~KDQSYfL 159 (376)
T 2hma_A 80 KEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFL 159 (376)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEE
T ss_conf 99999998989999860379994421123466999999998615662146734213677998689885167777742244
Q ss_pred CCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 35764100357968710121042899999899818932026678642210
Q gi|254780546|r 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 (423)
Q Consensus 151 ~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~ 200 (423)
+.+.+... -+++=||-+++|+|+|+.++++|++..+-|..++..|-
T Consensus 160 ~~l~~~~L----~~~iFPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICFi 205 (376)
T 2hma_A 160 SQLSQEQL----QKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFI 205 (376)
T ss_dssp TTCCHHHH----TTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTT
T ss_pred EEECHHHH----HCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 43258788----36668889997789999998759532676455453003
No 8
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.46 E-value=5.9e-14 Score=116.20 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=113.9
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC------HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 527998399996694248999999999998648997299999966779878------46899999999987189889999
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYVSDVCSRLRIAHSVVS 88 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~------s~~e~~~v~~~~~~lgi~~~~~~ 88 (423)
|-+...||+||+|||+||++-+++|++. +++|.++|+.+.-..+ +.++.+.++++|+.|||||+++.
T Consensus 13 m~~~~kkV~V~mSGGVDSsvaa~lL~~q-------G~~V~gv~m~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~~~d 85 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ-------GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVN 85 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT-------CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 7766887999877869999999999977-------996899999887688766788846789999999998499779945
Q ss_pred EECC-----------------CCCCCCHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC-
Q ss_conf 7504-----------------78778037888545555432-001234420123456665668999986236544--43-
Q gi|254780546|r 89 WKNS-----------------KPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRSQRDYAE--KG- 147 (423)
Q Consensus 89 ~~~~-----------------~~~~~~~~~ar~~r~~~~~~-~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~--~g- 147 (423)
.... .|.+.+... +......+.+ ++.+.++.+++|||.+.-.-..--.++.++.-. +.
T Consensus 86 ~~~~f~~~V~~~f~~~y~~G~TPNPcv~CN-~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~~~~~~L~r~~D~~KDQS 164 (380)
T 2der_A 86 FAAEYWDNVFELFLAEYKAGRTPNPDILCN-KEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQS 164 (380)
T ss_dssp CHHHHHHHTHHHHHHHHHTTCCCCHHHHHH-HHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEHHHHHHHHHHHCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCE
T ss_conf 089762224577799987589998540113-3322899999999866998560003799975899577885277777844
Q ss_pred CCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3223576410035796871012104289999989981893202667864221
Q gi|254780546|r 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 (423)
Q Consensus 148 ~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f 199 (423)
--|+++.+... -+++=||-+++|+|+|+.+++.|++-.+-+..+|..|
T Consensus 165 YfL~~l~~~~L----~~~~FPLG~~~K~eVR~iA~~~gl~~a~K~dSq~ICF 212 (380)
T 2der_A 165 YFLYTLSHEQI----AQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICF 212 (380)
T ss_dssp GGGSSCCHHHH----HHEECCGGGSCHHHHHHHHHHTTCC------------
T ss_pred EEEEEECHHHH----CCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 67654357650----5547689788557899999986997567556667454
No 9
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.33 E-value=1.3e-11 Score=99.63 Aligned_cols=155 Identities=15% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 69899999999852799839999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 (423)
Q Consensus 3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi 82 (423)
+||.+.++..+..+ |.+++|+.|||+||++||||+.+. .+ ++.+++||+|.-. .+-.+++.++++.+|+
T Consensus 31 ~~~~~~i~~a~~~~--~~~~~vs~SgGkDS~VlLhL~~k~-----~~--~~~vvfvDTg~ef--pET~~~~~~~~~~~~l 99 (252)
T 2o8v_A 31 LDAEGRVAWALDNL--PGEYVLSSSFGIQAAVSLHLVNQI-----RP--DIPVILTDTGYLF--PETYRFIDELTDKLKL 99 (252)
T ss_dssp SCHHHHHHHHHTTS--CSCEEEECCCSTTHHHHHHHHHHH-----ST--TCEEEECCCSCBC--HHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHH-----CC--CCCEEEEECCCCC--HHHHHHHHHHHHHHCC
T ss_conf 99999999999976--998899946877999999999961-----89--9867997689999--9999999999997398
Q ss_pred CEEEEEEECCCCCCCCHHHHHHH-----------HHHH------HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88999975047877803788854-----------5555------432001234420123456665668999986236544
Q gi|254780546|r 83 AHSVVSWKNSKPQTGLMAAAREA-----------RYAL------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ar~~-----------r~~~------~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~ 145 (423)
+..+.+-+.. .....++.. ++.. +.......+....++|- |..
T Consensus 100 ~i~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~cc~~~K~~p~~~~l~~~~~~~~i~G~--------------R~~-- 159 (252)
T 2o8v_A 100 NLKVYRATES----AAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGL--------------RRE-- 159 (252)
T ss_dssp EEEECCCSSC----HHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECC--------------CST--
T ss_pred CEEEECCCCH----HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCC--------------EEC--
T ss_conf 6279668711----68887351676667850677864577551499998632850001374--------------017--
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 43322357641003579687101210428999998998189320
Q gi|254780546|r 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 146 ~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
.+ .--...+......+...+.||+.++.+++-+|+.++||+|.
T Consensus 160 Es-~~Ra~~~~~~~~~~~~kv~PI~~Wt~~DVw~Yi~~~~lp~n 202 (252)
T 2o8v_A 160 QS-GSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp TT-TCCTTSCSEEESSSSEEECGGGSCCHHHHHHHHHHTTCCCC
T ss_pred CC-CCCCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCC
T ss_conf 86-22014863431599013087376989999999998099988
No 10
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.32 E-value=1.3e-11 Score=99.62 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76989999999985279983999966942489999999999986489972999999667798784689999999998718
Q gi|254780546|r 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 (423)
Q Consensus 2 ~~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg 81 (423)
.++|.+.++-.+..+ +++++|+.|||+||++||||+.+. . + .+.++++|+|+.. .+-.+++.++++.+|
T Consensus 29 ~~~~~~~i~~a~~~~--~~~~~vs~S~GkDS~Vll~L~~~~---~--~--~~~vvf~DTg~~f--pET~~~~~~~~~~~~ 97 (215)
T 1sur_A 29 KLDAEGRVAWALDNL--PGEYVLSSSFGIQAAVSLHLVNQI---R--P--DIPVILTDTGYLF--PETYRFIDELTDKLK 97 (215)
T ss_dssp TSCHHHHHHHHHHHC--CSEEEEECCCCTTHHHHHHHHHHH---S--T--TCEEEEEECSCBC--HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHC---C--C--CCEEEEEECCCCC--HHHHHHHHHHHHHHC
T ss_conf 699999999999976--998899955875799999999714---9--9--9518996389998--999999999999849
Q ss_pred CCEEEEEEECCCC-----CCC-----CHHHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9889999750478-----778-----0378885455---55432001234420123456665668999986236544433
Q gi|254780546|r 82 IAHSVVSWKNSKP-----QTG-----LMAAAREARY---ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 (423)
Q Consensus 82 i~~~~~~~~~~~~-----~~~-----~~~~ar~~r~---~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~ 148 (423)
++..+.+.+.... ... .....+.+.. .-+.......+....++|.-.++ +.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~p~~~~l~~~~~~~~i~G~R~~e----------------s~ 161 (215)
T 1sur_A 98 LNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ----------------SG 161 (215)
T ss_dssp CEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS----------------SS
T ss_pred CEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCC----------------CH
T ss_conf 80599962411798886517766678402233155231407999985158626415661267----------------33
Q ss_pred CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 22357641003579687101210428999998998189320
Q gi|254780546|r 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
.- +.++......+..-+.||+.++.+++-+|+.++||++.
T Consensus 162 ~R-a~~~~~~~~~~~~ki~Pi~~Wt~~DVw~Yi~~~~lp~n 201 (215)
T 1sur_A 162 SR-ANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp TT-TTCCSEEEETTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred HH-HCCCCEEECCCEEEEECHHHCCHHHHHHHHHHCCCCCC
T ss_conf 46-51874530599799957286999999999998199988
No 11
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Probab=99.16 E-value=1.3e-09 Score=85.51 Aligned_cols=160 Identities=23% Similarity=0.194 Sum_probs=102.9
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 852799839999669424899999999999864899729999996677-9878468999999999871898899997504
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-lr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~ 92 (423)
+...+..+|++|+|||+||++.+.|++.. .. +++.++|||| ||.+ |.+.|.+..+++|++..++.....
T Consensus 204 r~~vg~~~Vi~~lSGGVDSsV~A~Ll~kA----~~---~~~cvfVD~GllRk~---E~~~v~~~~~~~~~~~~~vda~~~ 273 (503)
T 2ywb_A 204 RERAGKDRVLLAVSGGVDSSTLALLLAKA----GV---DHLAVFVDHGLLRLG---EREEVEGALRALGVNLLVVDAKER 273 (503)
T ss_dssp HHHHTTSEEEEEECSSHHHHHHHHHHHHH----TC---EEEEEEEECSCSCTT---HHHHHHHHHHHTTCCEEEEECHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHH----HH---HEEEEEECCCCCCCC---HHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 99848861799834870659999999997----65---308999468766576---099999999874985899960487
Q ss_pred -----CCCCCCHHH---HHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----787780378---88545555432001234-420123456665668999986236544433223576410035796
Q gi|254780546|r 93 -----KPQTGLMAA---AREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 (423)
Q Consensus 93 -----~~~~~~~~~---ar~~r~~~~~~~~~~~~-~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~ 163 (423)
+.-..-|.. --....+.+.+.+++.+ ..+++.|...-|.+|..--.. ...++.-.=.+.. ...-..
T Consensus 274 Fl~~L~gv~dPE~KRkiIG~~Fi~vfe~~~~~~~~~~~L~QGTlypDvIES~~~~~--~~~iKsHHNvggl---p~~~~~ 348 (503)
T 2ywb_A 274 FLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHG--AAKIKSHHNVGGL---PEDLEF 348 (503)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-------------------CC---CSSCCC
T ss_pred HHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCC--CCCCCCCCCCCCC---HHHHCC
T ss_conf 77862598795897432038999999999875489679952761365340367777--7776031568864---466230
Q ss_pred EEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf 8710121042899999899818932
Q gi|254780546|r 164 WISRPFLRCRREDIRSFLLQRNISW 188 (423)
Q Consensus 164 ~i~RPLL~~~r~~l~~~~~~~~i~w 188 (423)
.++-||-.+-|+|.|+..++.|++-
T Consensus 349 klvEPl~~lfKdEVR~lg~~Lglp~ 373 (503)
T 2ywb_A 349 ELLEPFRLLFKDEVRELALLLGLPD 373 (503)
T ss_dssp EEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 0456899985789999999868989
No 12
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni}
Probab=99.14 E-value=5.5e-10 Score=88.09 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=104.2
Q ss_pred HHHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999852---7998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r 7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 7 ~~~~~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~ 83 (423)
+.+..|++.- .+..+++||+|||.||++++.++++... -++.+++++++..+ ..+.+.+.++|+.+||+
T Consensus 11 ~~i~~~i~~~~~~~g~~~vvlglSGGVDSsv~a~La~~al~------~~v~~v~~~~~~~~--~~~~~~a~~la~~lgi~ 82 (249)
T 3p52_A 11 EKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALK------ENVFALLMPTQISN--KANLEDALRLCADLNLE 82 (249)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHT------TSEEEEECCSCCSS--CHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC------CCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
T ss_conf 99999999999992998299978898899999999998448------71799857841100--06899999999981776
Q ss_pred EEEEEEECC-------CCCC---CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 899997504-------7877---803788854555543200123442012345666566899998623654443322357
Q gi|254780546|r 84 HSVVSWKNS-------KPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM 153 (423)
Q Consensus 84 ~~~~~~~~~-------~~~~---~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~ 153 (423)
+.++..+.. .... ..+....+.|...+...+...+...+.|++ .++.. . |...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~r~~~l~~~a~~~~~~v~~t~n-kse~~------~--G~~t-------- 145 (249)
T 3p52_A 83 YKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELL------L--GYGT-------- 145 (249)
T ss_dssp EEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHH------H--TCSC--------
T ss_pred CCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC-HHHHH------C--CCHH--------
T ss_conf 00000146888875100100046788999988789998766352855767885-55452------5--7322--------
Q ss_pred CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC--CCCCCCCC
Q ss_conf 6410035796871012104289999989981893--20266786
Q gi|254780546|r 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPSNT 195 (423)
Q Consensus 154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~--wveDpSN~ 195 (423)
. ...+...+-|+-++.|.|+++.++..|++ +++-|.-.
T Consensus 146 --k--~gd~~~~~~Pl~~L~K~eVr~La~~lg~p~~ii~k~psa 185 (249)
T 3p52_A 146 --I--YGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSA 185 (249)
T ss_dssp --T--TTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC----
T ss_pred --H--HHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf --3--531565200157978999999999969819870799996
No 13
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.13 E-value=2.9e-10 Score=90.09 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=95.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 27998399996694248999999999998648997299999966779878468999999999871898899997504787
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ 95 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~ 95 (423)
+..-++++|++|||+||++||||+.+.... ..+ .+.++|||+|.-- .+-.+|+.++++++|++..+.........
T Consensus 43 ~~~f~~~vv~fSGGKDStVlLhLa~ka~~~-~~~--p~pvl~iDTg~~F--pETi~f~d~v~~~~gl~l~v~~~~~~~~~ 117 (325)
T 1zun_A 43 AAEFDNPVMLYSIGKDSAVMLHLARKAFFP-GKL--PFPVMHVDTRWKF--QEMYRFRDQMVEEMGLDLITHINPDGVAQ 117 (325)
T ss_dssp HHHCSSEEEECCSSHHHHHHHHHHHHHHTT-SCC--SSCEEEECCSCCC--HHHHHHHHHHHHTTTCCEEEECC------
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHHHCC-CCC--CEEEEEECCCCCH--HHHHHHHHHHHHHHCCCCEEECCCHHHHC
T ss_conf 997599799954758999999999997342-489--8358995489862--99999999999982997225148067761
Q ss_pred ------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCC-------CCCC
Q ss_conf ------7803788854555543200123442012345666566899998623--654443322357641-------0035
Q gi|254780546|r 96 ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR--DYAEKGMGLSGMCDT-------ILYD 160 (423)
Q Consensus 96 ------~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r--~sg~~g~~l~~~~~~-------~~~~ 160 (423)
.+...-........+.......+....++|.-.|+....--++.+. ...... ....-.|. ....
T Consensus 118 g~~~~~~~~~~~~~~~K~~pl~~al~~~~~d~~i~G~RrdEs~~Rak~~~~s~r~~~~~~-~~~~q~pe~w~~~~~~~~~ 196 (325)
T 1zun_A 118 GINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRW-DPKNQRPELWNVYNGNVNK 196 (325)
T ss_dssp --------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECTTCCB-CGGGCCCCCSSCCCCCCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCEECCCCCC-CCCCCCHHHHHHCCCCCCC
T ss_conf 778655786886478877889999986087638842435443343026310100235545-5100586666521575688
Q ss_pred CCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 79687101210428999998998189320
Q gi|254780546|r 161 LNLWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 161 ~~~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
++..-+.|+++++..+|-.|...++|++.
T Consensus 197 ~~~vrv~PI~dWTe~DVW~YI~~~~Ip~n 225 (325)
T 1zun_A 197 GESIRVFPLSNWTELDIWQYIYLEGIPIV 225 (325)
T ss_dssp TCEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 87557725546889999999998199988
No 14
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.10 E-value=1.8e-09 Score=84.48 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=101.9
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHH-HCCCCEEEEEEEC
Q ss_conf 8527998399996694248999999999998648997299999966779-8784689999999998-7189889999750
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCS-RLRIAHSVVSWKN 91 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-r~~s~~e~~~v~~~~~-~lgi~~~~~~~~~ 91 (423)
+.-.+..+|++|+|||+||++.+.|++..... +++.++||||| |.+ |++.|.+..+ .+|++...+....
T Consensus 222 r~~Vg~~kVi~~lSGGVDSsV~A~Ll~kAig~------~l~cvfvD~GllRk~---E~~~v~~~~~~~~~~~~~~vda~~ 292 (525)
T 1gpm_A 222 REQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAEQVLDMFGDHFGLNIVHVPAED 292 (525)
T ss_dssp HHHHTTCEEEEECCSSHHHHHHHHHHHHHHGG------GEEEEEEECSCSCTT---HHHHHHHHHTTTTCCCEEEEECHH
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHHCCC------CEEEEEECCCCCCCC---CHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 99848870799724882169999999873056------068998278766467---299999999986297079976188
Q ss_pred C-----CCCCCCHHHHHH----HHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4-----787780378885----4555543200-12344201234566656689999862365444332235764100357
Q gi|254780546|r 92 S-----KPQTGLMAAARE----ARYALISEHA-KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 (423)
Q Consensus 92 ~-----~~~~~~~~~ar~----~r~~~~~~~~-~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~ 161 (423)
. +.-..-|+ -|. .....+.+.+ +..++.+++.|...-|..|+..-......-++.-.-.+..| ...
T Consensus 293 ~Fl~~L~gv~dPE~-KRkiIG~~Fi~vf~~~~~~~~~~~~L~QGTlypDviEs~~~~~~~a~~IKsHHNvgglp---~~~ 368 (525)
T 1gpm_A 293 RFLSALAGENDPEA-KRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLP---KEM 368 (525)
T ss_dssp HHHHHHTTCCCHHH-HHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC-------------------------
T ss_pred HHHHHHCCCCCHHH-HHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEECCCCCCC---CCC
T ss_conf 88997548768889-60400178999999998502577088404424406654147789877347653467651---014
Q ss_pred CCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf 96871012104289999989981893
Q gi|254780546|r 162 NLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 162 ~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
+..++-||-.+-|+|.|+..++.|++
T Consensus 369 ~~~liEPl~~l~KdEVR~lg~~Lglp 394 (525)
T 1gpm_A 369 KMGLVEPLKELFKDEVRKIGLELGLP 394 (525)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCC
T ss_pred CCCEECHHHHHHHHHHHHHHHHHCCC
T ss_conf 66300438888589999999872998
No 15
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.08 E-value=2e-09 Score=84.08 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=96.6
Q ss_pred HHHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999852---7998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r 7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 7 ~~~~~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~ 83 (423)
+.+..|++.- .+..+++||+|||+||++.+.+++..... ++++++++++.. ++++.......|+.+||+
T Consensus 10 ~~l~~~i~~~v~~~g~k~vvvglSGGVDSav~A~La~~a~~~------~v~~v~mp~~~~--~~~~~~~A~~~a~~Lgi~ 81 (268)
T 1xng_A 10 VYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKE------NAHALLMPSSVS--MPENKTDALNLCEKFSIP 81 (268)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGG------GEEEEECCCSSS--CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------CCEEEECCCHHC--CHHHHHHHHHHHHHHHHC
T ss_conf 999999999999829981999786889999999999985032------267871350105--715579999999983302
Q ss_pred EEEEEEECC--------CCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 899997504--------78778--03788854555543200123442012345666566899998623654443322357
Q gi|254780546|r 84 HSVVSWKNS--------KPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM 153 (423)
Q Consensus 84 ~~~~~~~~~--------~~~~~--~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~ 153 (423)
+.+...... ..... .....-+.|...+...+...+...+.|++- .|+.. |-+..
T Consensus 82 ~~~i~~~~~~~~~~~~~~~~~~~~~~n~~aR~r~~~ly~~a~~~~~~v~gt~n~----~e~~~-----g~~t~------- 145 (268)
T 1xng_A 82 YTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SERML-----GYGTL------- 145 (268)
T ss_dssp EEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHHHH-----TCSCT-------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCEEE-----CCCCC-------
T ss_conf 301327999988887501245678778899987888888899709824688775----43103-----56765-------
Q ss_pred CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf 6410035796871012104289999989981893--202667864
Q gi|254780546|r 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPSNTD 196 (423)
Q Consensus 154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~--wveDpSN~d 196 (423)
.+...-.+=||-++.|.|+++.++..|+| .++-|.-.+
T Consensus 146 -----~gd~~~~~~Pl~~L~K~eVr~LAr~lglP~~ii~k~Ps~~ 185 (268)
T 1xng_A 146 -----FGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSAD 185 (268)
T ss_dssp -----TTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCC
T ss_pred -----HHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf -----5542668411469709999999998099699807999989
No 16
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.08 E-value=2.5e-10 Score=90.47 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=101.6
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 852799839999669424899999999999864899729999996677-9878468999999999871898899997504
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-lr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~ 92 (423)
+.-.++.||++|+|||+||++.+.|++.... +-+|++++|||| +|++ |++.|.+..+++|++..++.....
T Consensus 235 r~~Vg~~kVl~~lSGGVDStV~A~Ll~kAlG-----~drl~~v~IDnGlmRk~---E~~~V~~~~~~lgl~l~~vdas~~ 306 (697)
T 2vxo_A 235 KERVGTSKVLVLLSGGVDSTVCTALLNRALN-----QEQVIAVHIDNGFMRKR---ESQSVEEALKKLGIQVKVINAAHS 306 (697)
T ss_dssp HHHHTTCEEEEECCSSHHHHHHHHHHHHHSC-----GGGEEEEEEECSCCCSS---TTHHHHHHHHHTTCCEEEEECHHH
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCCCC---HHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 9862884489950587206999999998516-----47469998265447755---499999999983996799826786
Q ss_pred C----------------------CCCCC--HHHHHH----HHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7----------------------87780--378885----455554320012----344201234566656689999862
Q gi|254780546|r 93 K----------------------PQTGL--MAAARE----ARYALISEHAKT----INATLIMTAHTFDDQLETVYMRSQ 140 (423)
Q Consensus 93 ~----------------------~~~~~--~~~ar~----~r~~~~~~~~~~----~~~~~l~~ah~~dD~~Et~l~rl~ 140 (423)
. .-.++ .+.-|. ...+.+.+.+.+ .++.+++.|....|.+|+.-.-..
T Consensus 307 F~~~~t~~~~~~~~~~~~~~~l~~L~gv~dPEeKRKIIG~tFi~Vfe~~~~~~~~~~~~~~L~QGTlypDvIES~~~~~~ 386 (697)
T 2vxo_A 307 FYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVAS 386 (697)
T ss_dssp HHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCC
T ss_conf 41354454333445206788999752877889976565076599999888774146411043236517034302566777
Q ss_pred CC-CCCCCCC-CCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf 36-5444332-235764100357968710121042899999899818932
Q gi|254780546|r 141 RD-YAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 (423)
Q Consensus 141 r~-sg~~g~~-l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w 188 (423)
.. ..++.-. -.+++... ...+.++-||-.+-|+|.|+..++.|+|-
T Consensus 387 ~~a~~IKsHHNvggLp~~l--~~~~~~vEPLr~LfKDEVR~lG~~LGlP~ 434 (697)
T 2vxo_A 387 GKAELIKTHHNDTELIRKL--REEGKVIEPLKDFHKDEVRILGRELGLPE 434 (697)
T ss_dssp SCCCGGGSCCSSCHHHHHH--HHTTCEECGGGGSCHHHHHHHHHHTTCCH
T ss_pred CCCCCEEEECCCCCCCHHH--HCCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 7655455011157774433--01354034677774799999999869888
No 17
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.01 E-value=5.3e-09 Score=81.17 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHH---H-C--CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 698999999998---5-2--799839999669424899999999999864899729999996677987846899999999
Q gi|254780546|r 3 LSPIESVRFFVR---S-L--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 (423)
Q Consensus 3 ~~p~~~~~~~~~---~-l--~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~ 76 (423)
.+|.+-+.+-+. . + .+...|+||+|||+||++.+.++++. .. ++.++++.+.. .+.++.+.++.+
T Consensus 7 ~~~~~~~~~iv~~i~~~~~~~~~~~vvvglSGGVDSav~A~L~~~a----~~---~v~~v~m~~~~--~~~~~~~dA~~l 77 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKT----GL---PTTALILPSDN--NQHQDMQDALEL 77 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHT----TS---CEEEEECCCTT--SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC----CC---CCEEEECCCCC--CCHHHHHHHHHH
T ss_conf 9999999999999999999809982999677989999999999982----98---75252368763--306899999999
Q ss_pred HHHCCCCEEEEEEECCC------------CCCC-----CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98718988999975047------------8778-----037888545555432001234420123456665668999986
Q gi|254780546|r 77 CSRLRIAHSVVSWKNSK------------PQTG-----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 (423)
Q Consensus 77 ~~~lgi~~~~~~~~~~~------------~~~~-----~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl 139 (423)
|+.+||+|.++..+... ...+ .+....+.|...+...+...+...+.|++-- |...
T Consensus 78 a~~Lgi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~r~~~l~~~a~~~~~lv~gt~n~s----e~~~--- 150 (249)
T 3fiu_A 78 IEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNAC----EWYM--- 150 (249)
T ss_dssp HHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHH----HHHH---
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC----CHHC---
T ss_conf 987167630024657899999997541033540569998767899999899998741598401798643----1012---
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 236544433223576410035796871012104289999989981893--202667
Q gi|254780546|r 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPS 193 (423)
Q Consensus 140 ~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~--wveDpS 193 (423)
|.... .+.+..-+-||.++.|.|+++.++..|+| .++-|.
T Consensus 151 --G~~tk------------~gd~~~di~Pl~~L~K~eVr~la~~lglP~~ii~k~P 192 (249)
T 3fiu_A 151 --GYFTK------------FGDGAADILPLVNLKKSQVFELGKYLDVPKNILDKAP 192 (249)
T ss_dssp --TCSCT------------TTTTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCC
T ss_pred --CCCCC------------CCCCCCCHHHCCCEEHHHHHHHHHHCCCCHHHHCCCC
T ss_conf --42454------------5787754342268079999999998199999981899
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.97 E-value=8.3e-09 Score=79.77 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=93.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC-----
Q ss_conf 983999966942489999999999986489972999999667798784689999999998718988999975047-----
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----- 93 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~----- 93 (423)
..|++|.+|||.||+++++++.+ . +.+++++|+|+|-+. ..|.+.+...+..++..+.+.......
T Consensus 2 mkk~VvL~SGGlDS~v~a~~l~~----~---g~~v~~l~~~yGq~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQ----D---YDDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----H---CSEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHH----C---CCEEEEEEEECCCCH--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 98699983680899999999997----6---996999999799832--99999999866543101210120455541356
Q ss_pred ----------CCCCCHHHH--------H-HHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCC
Q ss_conf ----------877803788--------8-5455554320012344201234566656------68999986236544433
Q gi|254780546|r 94 ----------PQTGLMAAA--------R-EARYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGM 148 (423)
Q Consensus 94 ----------~~~~~~~~a--------r-~~r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~ 148 (423)
+....++.. | ..-.......+...++..+.+|.+..|. ..+++..+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~a~~~~~~~~~~G~~~~d~~~~~d~~~~f~~~~~~~~~---- 148 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIV---- 148 (232)
T ss_dssp HHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHH----
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----
T ss_conf 5433444444321100236652353013088789999999983997531244466666777644869999999998----
Q ss_pred CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf 22357641003579687101210428999998998189
Q gi|254780546|r 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 (423)
Q Consensus 149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i 186 (423)
.....+++|.+|++..+|.|+...+.+.+.
T Consensus 149 --------~~~~~~~~i~~P~~~~tK~Ei~~~~~~~~~ 178 (232)
T 2pg3_A 149 --------LGIARDIRFETPLMWLNKAETWALADYYQQ 178 (232)
T ss_dssp --------HHHTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred --------HCCCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf --------557777269950225888999998543123
No 19
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.4e-08 Score=78.28 Aligned_cols=158 Identities=9% Similarity=0.094 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98999999998527998399996694248999999999998648997299999966779878468999999999871898
Q gi|254780546|r 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 4 ~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~ 83 (423)
+|.+.++-.+..+ .+++++.|||+||++||||+.+..... ..+.++.+|.|.-- .+--+++.++.+++|.+
T Consensus 29 ~p~eii~wa~~~~---~~~~~~~SfGkdS~VlLhL~~~v~~~~----~~~~VvfiDTG~ef--pET~e~ve~l~~~~~~~ 99 (261)
T 2oq2_A 29 TPQEIIAWSIVTF---PHLFQTTAFGLTGLVTIDMLSKLSEKY----YMPELLFIDTLHHF--PQTLTLKNEIEKKYYQP 99 (261)
T ss_dssp SHHHHHHHHHHHC---SSEEEECCCCHHHHHHHHHHHHHTTTS----CCCEEEEECCSCBC--HHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCCCC----CCCCEEEECCCCCC--HHHHHHHHHHHHHHCCC
T ss_conf 9999999999978---991899868788999999999856667----88867995599988--99999999999995865
Q ss_pred E----EEEEEECCCCCCCCHHH-HHHH--HH-------------HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8----99997504787780378-8854--55-------------554320012344201234566656689999862365
Q gi|254780546|r 84 H----SVVSWKNSKPQTGLMAA-AREA--RY-------------ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 (423)
Q Consensus 84 ~----~~~~~~~~~~~~~~~~~-ar~~--r~-------------~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~s 143 (423)
. .+.+.+. ....... +... .| ..+....++.+....++|-=.++.
T Consensus 100 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~cc~~~Kv~Pl~r~l~~~~~~~~i~GiR~~es------------ 164 (261)
T 2oq2_A 100 KNQTIHVYKPDG---CESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQG------------ 164 (261)
T ss_dssp GTCCCEEECSTT---CSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC------------
T ss_pred CCCCCEEECCCH---HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCC------------
T ss_conf 443431445755---66799998614876444688987667610547899985188747751020461------------
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 4443322357641-003579687101210428999998998189320
Q gi|254780546|r 144 AEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 144 g~~g~~l~~~~~~-~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
.. -+..... .....+..-+.|+++++.+++-.|+..+|++|.
T Consensus 165 --~~--R~~~~~~~~~~~~~~~~v~Pi~~Wt~~dVw~Yi~~~~lp~n 207 (261)
T 2oq2_A 165 --SA--RSQLSIIEIDELNGILKINPLINWTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp --GG--GGGCCSEEEETTTTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred --CC--CCCCCCEEECCCCCCEEECHHHCCCHHHHHHHHHHCCCCCC
T ss_conf --31--33575101437899446623440999999999998399988
No 20
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.86 E-value=1.2e-08 Score=78.58 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC-
Q ss_conf 9839999669424899999999999864899729999996677987846899999999987189889999750478778-
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG- 97 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~- 97 (423)
..|++|.+|||.||+++++++.+- +.+++++|||+|.+. ..+.......++.+.+.+.............
T Consensus 3 k~k~vvl~SGGlDS~~~a~~l~~~-------g~~v~~l~~~ygq~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-------FEEVETVTFHYNQRH--SQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPN 73 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-------CSEEEEEEEESSCTT--CHHHHHHHHHHHTTCCCEEEEECGGGGGGSTG
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC-------CCEEEEEEEECCCCC--CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 773999958818899999999987-------996999999888642--10457789999985200011103344442024
Q ss_pred ------CH--HH-----------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------HHHHHHHHCCCCCCCCCCCC
Q ss_conf ------03--78-----------8854555543200123442012345666566------89999862365444332235
Q gi|254780546|r 98 ------LM--AA-----------AREARYALISEHAKTINATLIMTAHTFDDQL------ETVYMRSQRDYAEKGMGLSG 152 (423)
Q Consensus 98 ------~~--~~-----------ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~------Et~l~rl~r~sg~~g~~l~~ 152 (423)
.+ .. ............+...++..+.++.+..|.. ..+...+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----------- 142 (219)
T 3bl5_A 74 ALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNV----------- 142 (219)
T ss_dssp GGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHH-----------
T ss_pred CCCCCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH-----------
T ss_conf 211120354430145553478610367778999998860344157422566655789983789999999-----------
Q ss_pred CCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf 7641003579687101210428999998998189
Q gi|254780546|r 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 (423)
Q Consensus 153 ~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i 186 (423)
+. ......++++++|++..+|.||...+.+.|.
T Consensus 143 ~~-~~~~~~~~~~~~P~~~~~K~eii~~~~~~~~ 175 (219)
T 3bl5_A 143 TV-NLAMEKPFVIHTPLMWLNKAETWKLADELGA 175 (219)
T ss_dssp HH-HHHHTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred HH-HHCCCCCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 99-7444550389724003729999999998289
No 21
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.85 E-value=1.9e-08 Score=77.23 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=96.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEEECCC----
Q ss_conf 983999966942489999999999986489972999999667798784689999999998718-988999975047----
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IAHSVVSWKNSK---- 93 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg-i~~~~~~~~~~~---- 93 (423)
..||++|+|||.||++.+.+|++ . +++|+++++|-|- + +|.+.+++.+.++| ++|+++......
T Consensus 14 k~KVvlAySGGLDTSv~l~~L~e----~---g~eVi~~~~d~Gq-~---ed~~~~~~kA~~~GA~~~~v~D~r~ef~~~~ 82 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----K---GFDVIAYVANVGQ-K---DDFVAIKEKALKTGASKVYVEDLRREFVTDY 82 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEESSC-C---CCHHHHHHHHHHHTCSEEEEEECHHHHHHHT
T ss_pred CCEEEEEECCCHHHHHHHHHHHH----C---CCEEEEEEEECCC-H---HHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 37099993887489999999987----7---9979999997997-6---7789999999984996899986099999999
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf -------------87780378885455554320012344201234566--656689999862365444332235764100
Q gi|254780546|r 94 -------------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 (423)
Q Consensus 94 -------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~--dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~ 158 (423)
.-....+.+|-.-...+.+.+++.++..++-|.+- +||+- +...- ..+.
T Consensus 83 i~p~I~ana~ye~~Y~l~tslaRplia~~~v~~A~~~ga~~iaHG~TGkGNDQvR-----Fe~~~-------~aL~---- 146 (421)
T 1vl2_A 83 IFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVR-----FELTY-------AALN---- 146 (421)
T ss_dssp HHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHH-----HHHHH-------HHHC----
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCH-----HHHHH-------HHHC----
T ss_conf 9999966887678653421111589999999999970874883365247775410-----77779-------8728----
Q ss_pred CCCCCEEECCHHCC-------CHHHHHHHHHHHCCCC
Q ss_conf 35796871012104-------2899999899818932
Q gi|254780546|r 159 YDLNLWISRPFLRC-------RREDIRSFLLQRNISW 188 (423)
Q Consensus 159 ~~~~~~i~RPLL~~-------~r~~l~~~~~~~~i~w 188 (423)
.++.++-|.-.. +|++..+||+++||+.
T Consensus 147 --p~~~iiaP~R~~~~~~~~~~R~~~i~ya~~~gI~v 181 (421)
T 1vl2_A 147 --PNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPI 181 (421)
T ss_dssp --TTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCC
T ss_pred --CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf --97631585666656542011999999999759997
No 22
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3}
Probab=98.84 E-value=2.2e-08 Score=76.71 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999852799839999669424899999999999864899729999996677987846899999999987189889999
Q gi|254780546|r 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88 (423)
Q Consensus 9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~ 88 (423)
++.+++. ....+++||+|||+||++.+.++++... +.++.+++.++.. ..+.+.++..|+.+|+++.+..
T Consensus 13 l~d~~~~-~g~~~vvvglSGGVDSav~A~La~~AlG-----~~~v~~v~~~~~~----~~~~~~A~~~~~~lgi~~~~i~ 82 (257)
T 2e18_A 13 ILEFIRE-KGNNGVVIGISGGVDSATVAYLATKALG-----KEKVLGLIMPYFE----NKDVEDAKLVAEKLGIGYKVIN 82 (257)
T ss_dssp HHHHHHH-HCTTCEEEECCSSHHHHHHHHHHHHHHC-----GGGEEEEECCSSC----STHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHCC-----CCEEEEECCCCCC----HHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999998-3999789968877999999999998638-----6416885157653----0347999999986378730243
Q ss_pred EECC--------CCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7504--------787---78037888545555432001234420123456665668999986236544433223576410
Q gi|254780546|r 89 WKNS--------KPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 (423)
Q Consensus 89 ~~~~--------~~~---~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~ 157 (423)
.+.. .+. ......-.+.|...+...+...+...+.|+. .+ |. ..|.+...
T Consensus 83 i~~~~~~~~~~l~~~~~~~~~~ni~ar~r~~~l~~~a~~~~~~vl~t~n-~s---e~-----~~g~~t~~---------- 143 (257)
T 2e18_A 83 IKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSN-RS---EF-----LTGYFTKW---------- 143 (257)
T ss_dssp CHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCC-HH---HH-----HHTCSCTT----------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC-CC---HH-----HEECCCCC----------
T ss_conf 0478999999864556677788789888689999998863977944787-34---23-----20135556----------
Q ss_pred CCCCCCEEECCHHCCCHHHHHHHHHHHCCCC
Q ss_conf 0357968710121042899999899818932
Q gi|254780546|r 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 (423)
Q Consensus 158 ~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~w 188 (423)
......+-||-++.|+|+++.++..|++.
T Consensus 144 --gd~~~~~~Pl~dL~K~eVr~La~~Lglp~ 172 (257)
T 2e18_A 144 --GDGASDYAPIINLYKTEVWEIAKRIGVPE 172 (257)
T ss_dssp --STTCSSBCTTTTSCHHHHHHHHHHHTCCH
T ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf --75457765456884999999999849996
No 23
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=98.81 E-value=7.7e-08 Score=72.92 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76989999999985279983999966942489999999999986489972999999667798784689999999998718
Q gi|254780546|r 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 (423)
Q Consensus 2 ~~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg 81 (423)
..+|.+.++..+..+ +.+|+|++|||.|| +||||+.+. . + .+.++.+|.|.-. .+--+++.++.+++|
T Consensus 39 ~~~~~eii~~a~~~f--~~~i~vSfSGGKDs-VlL~L~~~~---~--~--~i~Vvf~DTG~ef--pET~~~~~~~~~~~~ 106 (275)
T 2goy_A 39 DKSPQDILKAAFEHF--GDELWISFSGAEDV-VLVDMAWKL---N--R--NVKVFSLDTGRLH--PETYRFIDQVREHYG 106 (275)
T ss_dssp TSCHHHHHHHHHHHH--STTEEEECCSSTTH-HHHHHHHHH---C--T--TCCEEEECCSCCC--HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC--CCCEEEECCCHHHH-HHHHHHHHH---C--C--CCCEEEECCCCCC--HHHHHHHHHHHHHHC
T ss_conf 299999999999976--99889981586999-999999985---8--9--9718983589998--999999999999849
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCCC---CCCCCCC
Q ss_conf 988999975047877803788854555543200123442012345666566899998623--65444332---2357641
Q gi|254780546|r 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR--DYAEKGMG---LSGMCDT 156 (423)
Q Consensus 82 i~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r--~sg~~g~~---l~~~~~~ 156 (423)
++..+.+.+.. ..+...+......+........|. + ......+..+ +... -+|...-. -....+.
T Consensus 107 l~i~v~~~~~~----~~e~~~~~~~~~~~~~~~~~~Cc~-~----~Kv~Pl~ral-~~~~~witG~Rr~es~~r~~~~~~ 176 (275)
T 2goy_A 107 IAIDVLSPDPR----LLEPLVKEKGLFSFYRDGHGECCG-I----RKIEPLKRKL-AGVRAWATGQRRDQSPGTRSQVAV 176 (275)
T ss_dssp CCCEEECCCHH----HHHHHHHHHCSCHHHHHCTHHHHH-H----HTHHHHHHHH-HTCSEEECCCCGGGTTSCSCCCCS
T ss_pred CCEEEEECCHH----HHHHHHHHCCCCCCCCCCHHHHHH-H----HHHCCHHHHH-HCCCEEEECCCCCCCCCCCCCCCE
T ss_conf 97389937858----999999866875434346688865-5----5106256664-202314405650467665346732
Q ss_pred C-------CCCCCCEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 0-------03579687101210428999998998189320
Q gi|254780546|r 157 I-------LYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 157 ~-------~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
. ....++..+.||++++.+++-.|+.+++++|-
T Consensus 177 ~~~d~~~~~~~~~~~k~~PI~dWt~~DVw~Yi~~~~lp~n 216 (275)
T 2goy_A 177 LEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp EEECTTTCCSSSCCEEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred EEECCCCCCCCCCEEEECCHHCCCHHHHHHHHHHCCCCCC
T ss_conf 6860666776666058812201899999999998199988
No 24
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=98.79 E-value=3.7e-08 Score=75.17 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---------------CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9839999669424899999999999864---------------8997299999966779878468999999999871898
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDR---------------SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~---------------~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~ 83 (423)
...|.|++|||+||+|||||+....... ......+.++++|.+.-- .+-.+|+....+++|++
T Consensus 53 ~~ei~~SFSGGKDStVlL~L~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~yidt~~~F--pE~~~fv~~~~~~~~l~ 130 (306)
T 2wsi_A 53 NGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF--PTLENFVLETSERYCLS 130 (306)
T ss_dssp SSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--HHHHHHHHHHHHHTTEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf 5748998158337999999999985313442124555565434455788757994799998--78999999999972945
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999750478778037888545555432001234420123456665668999986236544433223576410035796
Q gi|254780546|r 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~ 163 (423)
..+...+...... . +..-..++. ...+...+++|-=.+|-. +..+....+......+.
T Consensus 131 ~~~~~~~~~~~~~-~----~~~~~~~lk---~~p~~~aii~G~R~~Es~--------------~R~~~~~~~~d~~~p~~ 188 (306)
T 2wsi_A 131 LYESQRQSGASVN-M----ADAFRDFIK---IYPETEAIVIGIRHTDPF--------------GEALKPIQRTDSNWPDF 188 (306)
T ss_dssp EEECCC-----CC-H----HHHHHHHHH---HCTTCCEEECCCCCCSSS--------------CCCCCSEEECCTTSCSC
T ss_pred EEEEECCCCHHHH-H----HHHHHHHHH---HCCCCCEEEECCCCCCCC--------------HHCCCCCCCCCCCCCCE
T ss_conf 9998378437777-5----688899998---499986899624046754--------------00158500205998863
Q ss_pred EEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 87101210428999998998189320
Q gi|254780546|r 164 WISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 164 ~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
..+.|+++++..++-.|+..++++|.
T Consensus 189 ~rv~PI~dWt~~DVW~yi~~~~lpy~ 214 (306)
T 2wsi_A 189 MRLQPLLHWDLTNIWSFLLYSNEPIC 214 (306)
T ss_dssp EEECTTTTCCHHHHHHHHHHHCCCBC
T ss_pred EEECCHHHCCHHHHHHHHHHCCCCCC
T ss_conf 89822363999999999997299988
No 25
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.76 E-value=4.4e-08 Score=74.69 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=88.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCC---------------CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 983999966942489999999999986489---------------97299999966779878468999999999871898
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSF---------------GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~---------------~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~ 83 (423)
...|.|++|||+||++||||+......... ....+.+++||.+.-. .+-.+|+....+.++++
T Consensus 58 ~~~i~~SFSGGKDStVlL~L~~~~~~~~~~~~~dt~~~~~~~~~~~~~~~~~~~id~~~~f--~e~~~fv~~~~~~~~l~ 135 (308)
T 3fwk_A 58 NGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTF--KTLENFIEETSLRYSLS 135 (308)
T ss_dssp SSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCC--HHHHHHHHHHHHHTTEE
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCC--HHHHHHHHHHHHHCCCC
T ss_conf 7728998478614999999999986533754256645574122025677407985788764--35999999999864996
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999975047877803788854555543200-123442012345666566899998623654443322357641003579
Q gi|254780546|r 84 HSVVSWKNSKPQTGLMAAAREARYALISEHA-KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~-~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~ 162 (423)
..+.++.. . ...... +.... ...+..++++|.=.+|-.. | .+...........+
T Consensus 136 l~~~~~~~--~-~~~~~~--------~~~~lk~~p~~~aii~G~R~~Es~~-------R-------~~~~~~~~~~~~p~ 190 (308)
T 3fwk_A 136 LYESDRDK--C-ETMAEA--------FETFLQVFPETKAIVIGIRHTDPFG-------E-------HLKPIQKTDANWPD 190 (308)
T ss_dssp EEECCTTS--C-CCHHHH--------HHHHHHHCTTCCEEECCCCTTSTTC-------T-------TCCSEEECCTTSCS
T ss_pred EEEECCCH--H-HHHHHH--------HHHHHHHCCCCCEEEECCCCCCCHH-------H-------HCCCCCCCCCCCCC
T ss_conf 29975860--2-368999--------9999997799727860350047014-------5-------32841155799987
Q ss_pred CEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 687101210428999998998189320
Q gi|254780546|r 163 LWISRPFLRCRREDIRSFLLQRNISWC 189 (423)
Q Consensus 163 ~~i~RPLL~~~r~~l~~~~~~~~i~wv 189 (423)
...+-|+++++..+|-.|...++++|.
T Consensus 191 ~~rv~PI~dWt~~DVW~Yi~~~~lpy~ 217 (308)
T 3fwk_A 191 FYRLQPLLHWNLANIWSFLLYSNEPIC 217 (308)
T ss_dssp CEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred EEEEEEHHHCCHHHHHHHHHHCCCCCC
T ss_conf 289820364899999999998499987
No 26
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.75 E-value=7e-08 Score=73.21 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=92.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC-
Q ss_conf 2799839999669424899999999999864899729999996677987846899999999987189-88999975047-
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK- 93 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~- 93 (423)
+..+.||++|+|||.|+++.+..|++ . +++|++++||-|- + +|.+.+++.+.++|. +++++....+.
T Consensus 2 m~~k~kVvLAySGGLDTSv~l~wL~e----~---g~eVia~~~d~Gq-~---~d~~~i~~kA~~~GA~~~~v~D~r~ef~ 70 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLKE----Q---GYDVIAYLANIGQ-K---EDFEEARKKALKLGAKKVFIEDVSREFV 70 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHHH----T---TEEEEEEEEESSC-C---CCHHHHHHHHHHHTCSEEEEEECHHHHH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCC-H---HHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 98788799990898279999999997----4---9869999996998-7---8889999999983998899971799999
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----------------8778037888545555432001234420123456--6656689999862365444332235764
Q gi|254780546|r 94 ----------------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCD 155 (423)
Q Consensus 94 ----------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~ 155 (423)
.-....+.+|-.-...+.+.+++.++.+++-|-+ -+||+ |+...- ..+
T Consensus 71 ~~~i~p~i~ana~yeg~Y~l~tslaRplia~~~v~~A~~~ga~~vaHG~TGkGNDQv-----RFe~~~-------~aL-- 136 (413)
T 2nz2_A 71 EEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQV-----RFELSC-------YSL-- 136 (413)
T ss_dssp HHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHH-----HHHHHH-------HHH--
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH-----HHHHHH-------HHH--
T ss_conf 999999997364558873124552187999999999998399798358776863688-----899999-------986--
Q ss_pred CCCCCCCCEEECCHHCC-------CHHHHHHHHHHHCCCCC
Q ss_conf 10035796871012104-------28999998998189320
Q gi|254780546|r 156 TILYDLNLWISRPFLRC-------RREDIRSFLLQRNISWC 189 (423)
Q Consensus 156 ~~~~~~~~~i~RPLL~~-------~r~~l~~~~~~~~i~wv 189 (423)
.-++.++-|.-.. +|++..+||+++||+.-
T Consensus 137 ----~P~~~viaP~Rd~~~~~~~~sR~e~i~y~~~~gi~v~ 173 (413)
T 2nz2_A 137 ----APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIP 173 (413)
T ss_dssp ----CTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCC
T ss_pred ----CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf ----9997025633125666530789999999998599987
No 27
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.67 E-value=1.2e-07 Score=71.57 Aligned_cols=150 Identities=12% Similarity=0.131 Sum_probs=95.5
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEEC
Q ss_conf 9852799839999669424899999999999864899729999996677987846899999999987189-889999750
Q gi|254780546|r 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKN 91 (423)
Q Consensus 13 ~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~ 91 (423)
++.++++.||++|+|||.|+++.+..|++ . ..+|++++||-|--. .++.+.+++.+.++|. +++++....
T Consensus 4 ~~~~~~gkKVvLAySGGLDTSv~l~wL~e----~---g~eVia~~~DvGQ~~--~ed~e~i~~kA~~~GA~~~~viD~r~ 74 (455)
T 1k92_A 4 LKHLPVGQRIGIAFSGGLDTSAALLWMRQ----K---GAVPYAYTANLGQPD--EEDYDAIPRRAMEYGAENARLIDCRK 74 (455)
T ss_dssp ECSCCTTSEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEECCCTT--CSCTTHHHHHHHHHTCSEEEEEECHH
T ss_pred HHHCCCCCEEEEEECCCCHHHHHHHHHHH----C---CCEEEEEEEECCCCC--HHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 33199898899994898289999999997----4---986999999799985--04179999999971997899971899
Q ss_pred CCC--------------------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 478--------------------77803788854555543200123442012345--66656689999862365444332
Q gi|254780546|r 92 SKP--------------------QTGLMAAAREARYALISEHAKTINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMG 149 (423)
Q Consensus 92 ~~~--------------------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah--~~dD~~Et~l~rl~r~sg~~g~~ 149 (423)
..- -...-+.+|-.-...+.+.+++.++..++-|- .-+||+--.+-.
T Consensus 75 eF~~~~i~~i~a~a~y~~~~~~~Y~l~tslaRplia~~~v~~A~~~ga~aiaHG~TGkGNDQvRFe~~~----------- 143 (455)
T 1k92_A 75 QLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYG----------- 143 (455)
T ss_dssp HHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHH-----------
T ss_conf 999998999985535541035665476520898899999999998299299547666765056577789-----------
Q ss_pred CCCCCCCCCCCCCCEEECCHHCC-------CHHHHHHHHHHHCCCCC
Q ss_conf 23576410035796871012104-------28999998998189320
Q gi|254780546|r 150 LSGMCDTILYDLNLWISRPFLRC-------RREDIRSFLLQRNISWC 189 (423)
Q Consensus 150 l~~~~~~~~~~~~~~i~RPLL~~-------~r~~l~~~~~~~~i~wv 189 (423)
.. ..-++.++-|.-.. +|++..+||+++||+.-
T Consensus 144 -~a------l~P~l~viaPwRd~~~~~~~~sR~~~i~ya~~~gIpv~ 183 (455)
T 1k92_A 144 -LL------TNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYK 183 (455)
T ss_dssp -HH------HCTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCC
T ss_pred -HH------CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -74------09986355684506678777659999998997199988
No 28
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei 1710B}
Probab=98.64 E-value=1.9e-07 Score=70.17 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=84.4
Q ss_pred CHHHHHHH---HHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHH-HHH
Q ss_conf 98999999---99852---799839999669424899999999999864899729999996677987846899999-999
Q gi|254780546|r 4 SPIESVRF---FVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-SDV 76 (423)
Q Consensus 4 ~p~~~~~~---~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v-~~~ 76 (423)
.|.+-|.+ |++.. .+..+++||+|||+||++.+.+++.........++.+..+.+.... .+..+.... +..
T Consensus 25 ~~~~~i~~~v~~l~dy~~ksg~k~vVvGlSGGVDSaV~A~L~~~a~g~~~~~g~~~~~v~~~~~~--~~~~~~~da~~~~ 102 (285)
T 3dpi_A 25 DARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPY--GAQHDEADARRAL 102 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCS--CC---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC--CCCCCHHHHHHHH
T ss_conf 99999999999999999981999699978888999999999999988734677663799984787--8865599999999
Q ss_pred HHHCCCCEEEEEEECCC------------CCCC-------CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98718988999975047------------8778-------0378885455554320012344201234566656689999
Q gi|254780546|r 77 CSRLRIAHSVVSWKNSK------------PQTG-------LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 (423)
Q Consensus 77 ~~~lgi~~~~~~~~~~~------------~~~~-------~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~ 137 (423)
+..+|+++.++.++... .... .++.--+.|...++..+...+..++.|+| . .|...-
T Consensus 103 a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Ni~aR~R~~~ly~~A~~~~~lVlgTgN-k---sE~~~G 178 (285)
T 3dpi_A 103 AFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDH-A---AESVMG 178 (285)
T ss_dssp HHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-H---HHHHHH
T ss_pred HHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCC-C---CCEEEE
T ss_conf 985387530551205888889998751565788412257861579988878899998754988983798-7---610365
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf 86236544433223576410035796871012104289999989981893
Q gi|254780546|r 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 138 rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
-... .| ++ ..-+=||-++.|.|+++.++..|++
T Consensus 179 y~tk-~g-D~---------------~~di~PLgdL~K~eVr~lAr~lglP 211 (285)
T 3dpi_A 179 FFTK-FG-DG---------------GADVLPLAGLTKRRVRALARMLGAD 211 (285)
T ss_dssp HHHC-CC-CC---------------CCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred EEEE-CC-CC---------------HHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 3465-17-61---------------6479886278999999999984897
No 29
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.62 E-value=4.1e-07 Score=67.77 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=89.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCC------
Q ss_conf 39999669424899999999999864899729999996677987846899999999987189-88999975047------
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSK------ 93 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi-~~~~~~~~~~~------ 93 (423)
||++|+|||.|+++.+..|++-. +++|+++++|-|- + +|.+.+++.+.++|. +++++......
T Consensus 2 KVvLAySGGLDTSv~l~wL~e~~------~~eVi~~~~d~Gq-~---~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY------RAEVIAFTADIGQ-G---EEVEEAREKALRTGASKAIALDLKEEFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH------TCEEEEEEEESSC-S---SCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHH
T ss_pred EEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEEECCC-H---HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 69999489817999999997405------9889999970886-6---766999999998499889997579999999999
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------8778037888545555432001234420123456--665668999986236544433223576410035
Q gi|254780546|r 94 -----------PQTGLMAAAREARYALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160 (423)
Q Consensus 94 -----------~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~--~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~ 160 (423)
.-.-..+.+|-.-...+.+.+++.++..++-|-+ -+||+--.+- .+ .+ .
T Consensus 72 p~i~ana~Ye~~Y~l~tslaRplia~~~v~~A~~~ga~~iaHG~TGkGNDQvRFe~~--~~----------al------~ 133 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELT--AY----------AL------K 133 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHH--HH----------HH------C
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH--HH----------HH------C
T ss_conf 999738655787623454106479999999985449769943777578723668889--99----------75------9
Q ss_pred CCCEEECCHH--CC-CHHHHHHHHHHHCCCC
Q ss_conf 7968710121--04-2899999899818932
Q gi|254780546|r 161 LNLWISRPFL--RC-RREDIRSFLLQRNISW 188 (423)
Q Consensus 161 ~~~~i~RPLL--~~-~r~~l~~~~~~~~i~w 188 (423)
-++.++-|.- .+ +|++..+||+++||+.
T Consensus 134 P~l~iiaPwRd~~~~sR~~~i~ya~~~gIpv 164 (400)
T 1kor_A 134 PDIKVIAPWREWSFQGRKEMIAYAEAHGIPV 164 (400)
T ss_dssp TTCEEECGGGTCCCCSHHHHHHHHHHTTCCC
T ss_pred CCCEEECCCHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 9974850101025366799999999849998
No 30
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.42 E-value=9.9e-06 Score=58.01 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHH----HC---CCCCEEEEEECCCHHHHHHHHHHHHHHHHC----CCCCEEEEEEEECCCCCCCHHHHHH
Q ss_conf 698999999998----52---799839999669424899999999999864----8997299999966779878468999
Q gi|254780546|r 3 LSPIESVRFFVR----SL---VYPAHILVAVSGGSDSMGLLIALHSVLSDR----SFGKIKFSAISVDHCLRETAKDEVR 71 (423)
Q Consensus 3 ~~p~~~~~~~~~----~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~----~~~~~~l~a~~vdHglr~~s~~e~~ 71 (423)
++|.+.+...+. .+ ..-.+|+|++|||.||++.+.|++...... ......+.++..-++... +.+++.
T Consensus 17 ~~~~~~i~~~v~~lrd~v~k~~~~k~vVlGLSGGVDSaV~A~L~~~Alg~~~v~~~~~~~~~~~v~mP~~~~~-~~~d~~ 95 (275)
T 1wxi_A 17 INAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQA-DEQDCQ 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCT-THHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHH
T ss_conf 9999999999999999999749988599978887889999999999999887631555531899978986764-258999
Q ss_pred HHHHHHHHCCCCEEEEEEECC-------------CC----CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999871898899997504-------------78----7780378885455554320012344201234566656689
Q gi|254780546|r 72 YVSDVCSRLRIAHSVVSWKNS-------------KP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 (423)
Q Consensus 72 ~v~~~~~~lgi~~~~~~~~~~-------------~~----~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et 134 (423)
...+..+++.+.+..++.. .. ..|+++ +.|-..+...+...+..++.|+|.- |.
T Consensus 96 --~a~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~N~~a---R~R~~~ly~~A~~~~~lVlgTgNks----E~ 166 (275)
T 1wxi_A 96 --DAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKA---RERMKAQYSIAGMTSGVVVGTDHAA----EA 166 (275)
T ss_dssp --HHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHH---HHHHHHHHHHHHHTTEEEBCCCCHH----HH
T ss_pred --HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHHHHHHHHCCCEEECCCCHH----HH
T ss_conf --99986307655315701789999987652067666320120257---8899999999844598787588487----77
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf 99986236544433223576410035796871012104289999989981893
Q gi|254780546|r 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 135 ~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
..|-.. ..+.+..-+-||-++.|.|+++.++..|+|
T Consensus 167 -----~~Gy~T------------k~GD~~~di~Pl~~L~K~eVr~La~~lgiP 202 (275)
T 1wxi_A 167 -----ITGFFT------------KYGDGGTDINPLYRLNKRQGKQLLAALACP 202 (275)
T ss_dssp -----TTTCSC------------TTTTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred -----HCCCCC------------CCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
T ss_conf -----528713------------367765214557327789999999865999
No 31
>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.30 E-value=2.4e-05 Score=55.28 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=88.8
Q ss_pred CCHHHHHH---HHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHHHH--CCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 69899999---999852---79983999966942489999999999986--48997299999966779878468999999
Q gi|254780546|r 3 LSPIESVR---FFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVS 74 (423)
Q Consensus 3 ~~p~~~~~---~~~~~l---~~~~~i~vAvSGG~DS~aLl~ll~~~~~~--~~~~~~~l~a~~vdHglr~~s~~e~~~v~ 74 (423)
+.|.+.+. .|++.. .+..+++||+|||.||.+.+.+++..... ....+.++.++..-++- ..+. +..+
T Consensus 16 ~d~~~~i~~~v~~Lrd~v~~~g~~~vVvGlSGGIDSav~A~L~~~a~~~~~~~~g~~~v~~v~mp~~~-~~~~---~da~ 91 (271)
T 1kqp_A 16 IDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGT-QQDE---DDAQ 91 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSS-CTTH---HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCH---HHHH
T ss_conf 99899999999999999999689819997988888999999999999988760688579998468767-6569---9999
Q ss_pred HHHHHCCCCEEE-EEEEC------------CCC------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999871898899-99750------------478------77803788854555543200123442012345666566899
Q gi|254780546|r 75 DVCSRLRIAHSV-VSWKN------------SKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 (423)
Q Consensus 75 ~~~~~lgi~~~~-~~~~~------------~~~------~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~ 135 (423)
..++.+++...+ +.++. ... .+|+++ +.|-..+...+...+...+.|++.- |.
T Consensus 92 ~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~Niqa---RiR~~~Ly~~An~~g~lvlgTgNks----E~- 163 (271)
T 1kqp_A 92 LALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKA---RTRMIAQYAIGGQEGLLVLGTDHAA----EA- 163 (271)
T ss_dssp HHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHH---HHHHHHHHHHHHHHTCEEBCCCCHH----HH-
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHCCCC---HHHHHHHHHHHHHCCCEEECCCCCC----CC-
T ss_conf 999860766516864088886766531121023432144525421---4455899876643696698389710----20-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf 9986236544433223576410035796871012104289999989981893
Q gi|254780546|r 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 136 l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
..|-.... | .+.--+=|+-++.|.|+++.++..|+|
T Consensus 164 ----~~Gy~Tky----G--------D~~~di~Pi~~L~K~eV~~la~~lgiP 199 (271)
T 1kqp_A 164 ----VTGFFTKY----G--------DGGADLLPLTGLTKRQGRTLLKELGAP 199 (271)
T ss_dssp ----TTTCSCTT----T--------TTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred ----EEEEEEEC----C--------CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf ----10016775----8--------787451323357789999999983998
No 32
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=97.95 E-value=4.7e-05 Score=53.25 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC----
Q ss_conf 7998399996694248999999999998648997299999966779878468999999999871898899997504----
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---- 92 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~---- 92 (423)
.+-.+++|++|||.||...+.++.+-.. ..++++++.-. ...|+......+++|+.+|+.+.++.++..
T Consensus 324 ~g~~~~v~glSGGiDSal~a~la~~alg-----~~~v~~~~mP~--~~ss~~t~~~a~~l~~~lg~~~~~~~i~~~~~~~ 396 (590)
T 3n05_A 324 NGFRSVLIGLSGGIDSALVAAIACDALG-----AQNVYGVSMPS--KYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAY 396 (590)
T ss_dssp TTCCCEEEECCSSHHHHHHHHHHHHHHC-----GGGEEEEECCC--SSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHH
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHCC-----CCCCEEEECCC--CCCCCCCHHHHHHHHHHCCCCCCCEECHHHHHHH
T ss_conf 1998699963799328999999998518-----86511354686--6674020999999999719973214317999999
Q ss_pred ----CC----CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ----78----7780378885455554320012344201234566656689999862365444332235764100357968
Q gi|254780546|r 93 ----KP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 (423)
Q Consensus 93 ----~~----~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~ 164 (423)
.. ..|+|+ +.|...+...+...+...+-|+. .. |- +.|... ..+...-
T Consensus 397 ~~~~~~~~~~~eN~qa---r~R~~~l~~~a~~~~~lvl~t~n-~s---E~---------------alG~~t--~~gd~~~ 452 (590)
T 3n05_A 397 MASLGLTGLAEENLQS---RLRGTTLMAISNQEGHIVLAPGN-KS---EL---------------AVGYST--LYGDSVG 452 (590)
T ss_dssp HHHHCCCTHHHHHHHH---HHHHHHHHHHHHHHTCEEBCCCC-HH---HH---------------HHTCCC--SSCTTSC
T ss_pred HHHCCCCCHHHHHHHH---HHHHHHHHHHHHHCCCEEECCCC-HH---HH---------------HHCCCE--ECCCCCC
T ss_conf 8621334135677788---77489999987146937963786-74---67---------------637511--1367763
Q ss_pred EECCHHCCCHHHHHHHHHHHC
Q ss_conf 710121042899999899818
Q gi|254780546|r 165 ISRPFLRCRREDIRSFLLQRN 185 (423)
Q Consensus 165 i~RPLL~~~r~~l~~~~~~~~ 185 (423)
-+-|+-+++|.+++..++..+
T Consensus 453 ~~~p~~~l~Kt~v~~l~~~~~ 473 (590)
T 3n05_A 453 AYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp SBCTTTTSCHHHHHHHHHHHH
T ss_pred CCEECCCCCHHHHHHHHHHHH
T ss_conf 200037853999999999985
No 33
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.77 E-value=0.00017 Score=49.26 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=95.0
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 852799839999669424899999999999864899-------7299999966779878468999999999871898899
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-------KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~-------~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~ 86 (423)
.++.....|++-+|||.||++++.++++........ ...+...+++- ++ ..|..+++.+++.+|.+|+.
T Consensus 221 ~rl~sdvpvg~~LSGGlDSSlIaal~~k~~~~~~~~~~~~~~~~~~~~tfsig~---~~-~~d~~~a~~vA~~l~~~h~~ 296 (553)
T 1ct9_A 221 SHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGL---PG-SPDLKAAQEVANHLGTVHHE 296 (553)
T ss_dssp HHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEES---TT-CHHHHHHHHHHHHHTCEEEE
T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC---CC-CCHHHHHHHHHHHCCCCCEE
T ss_conf 565088751477369974399999999863145555444312256653488328---99-97689999999981997769
Q ss_pred EEEECCCC------------CCCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----------------HHHHH
Q ss_conf 99750478------------77803-788854555543200123442012345666566----------------89999
Q gi|254780546|r 87 VSWKNSKP------------QTGLM-AAAREARYALISEHAKTINATLIMTAHTFDDQL----------------ETVYM 137 (423)
Q Consensus 87 ~~~~~~~~------------~~~~~-~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~----------------Et~l~ 137 (423)
+..+...- ..... ..+-.. ...+...+.+.+..++++|.-+|... +....
T Consensus 297 v~~~~~~~~~~l~~~i~~~e~p~~~~~~~~~~-~~~l~k~~~~~~~kVvLsGeGaDElFgGY~~~~~~~~~~~~~~~~~~ 375 (553)
T 1ct9_A 297 IHFTVQEGLDAIRDVIYHIETYDVTTIRASTP-MYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVR 375 (553)
T ss_dssp EECCHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 98388999999999999974678543310100-57889999966988999688751024784665008686888899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86236544433223576410035796871012104289999989981893202667864221018999764345
Q gi|254780546|r 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 (423)
Q Consensus 138 rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l 211 (423)
.+..-...+ +. ......-..++..-=|+|+ .++.+|+......+.--+.+. .+.--+|+.....
T Consensus 376 ~~~~l~~~~---l~-r~Dr~~ma~glE~R~PFLD---~~lve~~~~lp~~~k~~~~~~---~~K~iLR~a~~~~ 439 (553)
T 1ct9_A 376 KLLALHMYD---CA-RANKAMSAWGVEARVPFLD---KKFLDVAMRINPQDKMCGNGK---MEKHILRECFEAY 439 (553)
T ss_dssp HHHHGGGTH---HH-HHHHHHHTTTCEEECGGGC---HHHHHHHHHSCGGGTCC---C---CTTHHHHHHHGGG
T ss_pred HHHHHHHHH---HH-HHHHHHHHCCCCCCCCCCC---HHHHHHHHHCCHHHHHCCCCC---CCHHHHHHHHHHH
T ss_conf 999752435---56-6546777607852688787---899999981999996344677---6269999999875
No 34
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=97.71 E-value=0.00048 Score=46.11 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=80.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE-E-EECCCCCCCHHH--HHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 99839999669424899999999999864899729999-9-966779878468--9999999998718988999975047
Q gi|254780546|r 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-I-SVDHCLRETAKD--EVRYVSDVCSRLRIAHSVVSWKNSK 93 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a-~-~vdHglr~~s~~--e~~~v~~~~~~lgi~~~~~~~~~~~ 93 (423)
...+|+|-+|||+||+.-++.+.+ .+ +++.. + ++...-..-.-. -.+.++..++.+|||+.........
T Consensus 3 ~~~~v~vl~SGGKDS~lAl~~a~~----~G---~~v~~L~t~~~~~~~s~~~h~~~~~ll~~qA~algiPL~~~~~~~~~ 75 (227)
T 2d13_A 3 GLADVAVLYSGGKDSNYALYWALK----SG---LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEK 75 (227)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHH----TT---CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CT
T ss_pred CCCCEEEECCCCHHHHHHHHHHHH----CC---CEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 866499993686999999999998----69---92799999743888814155778999999999759971787467861
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf 87780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r 94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 (423)
Q Consensus 94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~ 173 (423)
++ .+..+....++.+...+.+|--.++...+..-+..... ++..+-||-+..
T Consensus 76 -----e~-----~~~~l~~~l~~~~v~~iv~Gdi~~~~~~~~~e~~~~~~------------------gl~~~~PLW~~d 127 (227)
T 2d13_A 76 -----EK-----EVEDLKNVLEGLKVDGIVAGALASRYQKERIENVAREL------------------GLKVYTPAWEKD 127 (227)
T ss_dssp -----TS-----HHHHHHHHHHTBCCSEEECCCSSCHHHHHHHHHHHHHH------------------TCEEECTTTTCC
T ss_pred -----HH-----HHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHC------------------CCEEECCCCCCC
T ss_conf -----58-----99999999997175607862376288999999999874------------------988873324887
Q ss_pred HHHHHHHHHHHCCCCCC---CCCCCCCCC
Q ss_conf 89999989981893202---667864221
Q gi|254780546|r 174 REDIRSFLLQRNISWCE---DPSNTDDRF 199 (423)
Q Consensus 174 r~~l~~~~~~~~i~wve---DpSN~d~~f 199 (423)
..++..-.-+.|+..+- |+.-.|+.|
T Consensus 128 ~~~ll~e~i~~G~~aiiv~v~~~~L~~~~ 156 (227)
T 2d13_A 128 PYQYMLEIIKLGFKVVFVAVSAYGLNESW 156 (227)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSTTCCGGG
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHH
T ss_conf 79999999987990999997458999689
No 35
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.69 E-value=0.00015 Score=49.69 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=50.5
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 527998399996694248999999999998648997299999966779878468999999999871898899997504
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~ 92 (423)
.+....+|++.+|||.||+.++.++++. . .++...++... ++ +|..+.+.+|+.+|++|++..++..
T Consensus 234 ~l~sd~pvg~~LSGGlDSSlIaala~~~-----~--~~i~tfs~g~~---~~-de~~~A~~vA~~lg~~h~~~~~~~~ 300 (503)
T 1q15_A 234 LAPRFDTVGIPLSGGLDSSLVTALASRH-----F--KKLNTYSIGTE---LS-NEFEFSQQVADALGTHHQMKILSET 300 (503)
T ss_dssp HGGGCSEEEEECCSSHHHHHHHHHHTTT-----C--SEEEEEEEEET---TB-CCHHHHHHHHHHHTCEEEEEEECHH
T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHH-----C--CCEEEECCCCC---CC-CHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 6268985689805874279999998751-----3--53011015776---77-6579999999994991741057678
No 36
>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis}
Probab=97.60 E-value=0.00029 Score=47.65 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999852799839999669424899999999999864899729999996677987846899999999987189889999
Q gi|254780546|r 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88 (423)
Q Consensus 9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~ 88 (423)
+++.++. .+-.+++|++|||.||...+.++.+.........-+|+.+..- -+..|.......+.+|+.+|+.|..+.
T Consensus 352 l~dyl~~-~g~~~~vlglSGGiDSal~a~la~~a~~~~~~~~~~v~~~~mp--s~~ss~~s~~~A~~la~~lg~~~~~i~ 428 (680)
T 3dla_A 352 LEQRLRA-LDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALP--GFATGEHTKNNAIKLARALGVTFSEID 428 (680)
T ss_dssp HHHHHHH-TTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECC--C-----CTHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC--CCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999984-5987255223357531788999999763204775444898326--444650339999988875498644455
Q ss_pred EECC--------C-------C-----CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 7504--------7-------8-----778037888545555432001234420123456665668999986236544433
Q gi|254780546|r 89 WKNS--------K-------P-----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 (423)
Q Consensus 89 ~~~~--------~-------~-----~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~ 148 (423)
++.. . . ..|+|+.. |-..+...+...+.-.+.|+.- + |. ..
T Consensus 429 I~~~~~~~~~~~~~~~~~~~~~~~~~~eN~qaR~---R~~~l~~~an~~~~lvl~t~N~-s---E~-----~~------- 489 (680)
T 3dla_A 429 IGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGL---RTDYLFRIANQRGGIVLGTGDL-S---EL-----AL------- 489 (680)
T ss_dssp CHHHHHHHHHHTTC---------CCHHHHHHHHH---HHHHHHHHHHHHTEEEEECCCH-H---HH-----HH-------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHHHHHHCCCCEEEECCCCC-C---HH-----HH-------
T ss_conf 7999999999864342178754414665110478---8999998641278189778961-0---36-----53-------
Q ss_pred CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC
Q ss_conf 2235764100357968710121042899999899818
Q gi|254780546|r 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 (423)
Q Consensus 149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~ 185 (423)
|.... ..+...--+-|+-+++|.+++++++..+
T Consensus 490 ---Gy~Tl-~yGD~~~~~~pi~~l~Kt~v~~l~~~~n 522 (680)
T 3dla_A 490 ---GWSTY-GVGDQMSHYNVNAGVPKTLIQHLIRWVI 522 (680)
T ss_dssp ---TCSCC-SSSTTCCSEESSTTSCHHHHHHHHHHHH
T ss_pred ---CCEEC-CCCCCCCCCCEECCCCHHHHHHHHHHHH
T ss_conf ---53100-4588675746117955999999999997
No 37
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.55 E-value=0.00031 Score=47.49 Aligned_cols=174 Identities=19% Similarity=0.211 Sum_probs=90.6
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 52799839999669424899999999999864899729999996677987846899999999987189889999750478
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP 94 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~ 94 (423)
++....++++-+|||.||++++.++++... ++..+++... ++ .|..+.+.+|+.+|++|+.+.++...-
T Consensus 237 rl~sd~~vg~~LSGGlDSSlIaala~k~~~-------~~~t~s~~~~---~~-dE~~~A~~vA~~lg~~h~~i~i~~~~~ 305 (513)
T 1jgt_A 237 RVTPGDTPLVVLSGGIDSSGVAACAHRAAG-------ELDTVSMGTD---TS-NEFREARAVVDHLRTRHREITIPTTEL 305 (513)
T ss_dssp HSCTTCCCEEECCSSHHHHHHHHHHHHHHS-------SCEEEEEECS---SC-CCHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HCCCCCCCEEECCCCCCHHHHHHHHHHHCC-------CCCEEECCCC---CC-CHHHHHHHHHHCCCCCCEEEECCHHHH
T ss_conf 335788876977898344999998764124-------4325742454---56-526677764210102533786189999
Q ss_pred CCCCHHHH-----------HHHHHHHHHHHCCCCCCCCHHHHHHHHHH------------HHHHHHHHHCCCCCCCCCCC
Q ss_conf 77803788-----------85455554320012344201234566656------------68999986236544433223
Q gi|254780546|r 95 QTGLMAAA-----------REARYALISEHAKTINATLIMTAHTFDDQ------------LETVYMRSQRDYAEKGMGLS 151 (423)
Q Consensus 95 ~~~~~~~a-----------r~~r~~~~~~~~~~~~~~~l~~ah~~dD~------------~Et~l~rl~r~sg~~g~~l~ 151 (423)
...+.... ...-..++.......++.++++|+-.|.. .+.++..-.. ..+++.
T Consensus 306 ~~~l~~~i~~~e~~~p~~~~~~~~~~~l~k~~~~~~kVvLsG~GaDElFgGY~~~~~~~~l~~~l~~d~~--~~~~l~-- 381 (513)
T 1jgt_A 306 LAQLPYAVWASESVDPDIIEYLLPLTALYRALDGPERRILTGYGADIPLGGMHREDRLPALDTVLAHDMA--TFDGLN-- 381 (513)
T ss_dssp HTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCSSCCEEECCTTTHHHHTTTCCCSCCHHHHHHHHHHHH--HCTTCC--
T ss_pred HHHHHHHHHHHHCCHHCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCHHHHHCCCHHHHHHHHHH--HHHHHH--
T ss_conf 9999999998732021025410124443201355503999854605642786233107117999999888--776555--
Q ss_pred CCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 576410035796871012104289999989981893202667864221018999764345
Q gi|254780546|r 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 (423)
Q Consensus 152 ~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l 211 (423)
.......-..++...-|+|+ .++.+||......+-- .|.. ++--+|+.....
T Consensus 382 ~~~d~~sma~gvE~R~PFLD---~~lve~~~~lp~~~k~--~~~~---~K~iLR~a~~~~ 433 (513)
T 1jgt_A 382 EMSPVLSTLAGHWTTHPYWD---REVLDLLVSLEAGLKR--RHGR---DKWVLRAAMADA 433 (513)
T ss_dssp TTCTHHHHTTTCEEECGGGS---HHHHHHHHHBCHHHHE--ETTE---ETHHHHHHHTTT
T ss_pred HHHHHHHHHCCCEEECCCCC---HHHHHHHHCCCHHHHC--CCCC---CHHHHHHHHHCC
T ss_conf 67776788618624688885---7999999839998923--8999---899999998675
No 38
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=97.41 E-value=0.00031 Score=47.44 Aligned_cols=127 Identities=10% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCC
Q ss_conf 9839999669424899999999999864899729999996677987846899999999987189--88999975047877
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQT 96 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi--~~~~~~~~~~~~~~ 96 (423)
..++++-+|||- |-+-.+++- + + +.++..+|.++ .+.+.+-...+.+...++.- .+++...+
T Consensus 179 ~Gk~l~LlSGGi-SpVAa~~~m---K-R---G~~v~~v~f~~--~~~~~~kv~~l~~~l~~~~~~~~~~~~~~~------ 242 (307)
T 1vbk_A 179 EGRMIGILHDEL-SALAIFLMM---K-R---GVEVIPVYIGK--DDKNLEKVRSLWNLLKRYSYGSKGFLVVAE------ 242 (307)
T ss_dssp TCEEEEECSSHH-HHHHHHHHH---H-B---TCEEEEEEESC--SSHHHHHHHHHHHHHHTTCTTSCCCCEEES------
T ss_pred CCCEEEEECCCC-CHHHHHHHH---H-C---CCEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECC------
T ss_conf 783589833773-099999999---6-6---98899999689--788999999999999975899847999767------
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHH
Q ss_conf 80378885455554320012344201234566656689999862365444332235764100357968710121042899
Q gi|254780546|r 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 (423)
Q Consensus 97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~ 176 (423)
..+.. ...+++.++..+.||-.....+-.. .++..-. ..-+..++|||+++.|+|
T Consensus 243 ~~~~~---------~~ia~~~~~~~ivtGeslgQVaSQt-~n~~~~~---------------~~~~~pi~RPLig~DK~E 297 (307)
T 1vbk_A 243 SFDRV---------LKLIRDFGVKGVIKGLRPNDLNSEV-SEITEDF---------------KMFPVPVYYPLIALPEEY 297 (307)
T ss_dssp SHHHH---------HHHHHHHTCCEEECCCCGGGCCTTC-HHHHHHH---------------HHCSSCEECHHHHSCHHH
T ss_pred CHHHH---------HHHHHHCCCCEEEECCCHHHHHHHH-HHHHHHH---------------HCCCCCCCCCCCCCCHHH
T ss_conf 68999---------9999984998999351525889999-9899998---------------415987024837899899
Q ss_pred HHHHHHHHCC
Q ss_conf 9998998189
Q gi|254780546|r 177 IRSFLLQRNI 186 (423)
Q Consensus 177 l~~~~~~~~i 186 (423)
|.+.+++.|+
T Consensus 298 Ii~~Ar~IGl 307 (307)
T 1vbk_A 298 IKSVKERLGL 307 (307)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
T ss_conf 9999998686
No 39
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=96.80 E-value=0.0018 Score=42.08 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=77.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC------------CC-----------------CEEEE------EEEECC
Q ss_conf 27998399996694248999999999998648------------99-----------------72999------999667
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRS------------FG-----------------KIKFS------AISVDH 60 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~------------~~-----------------~~~l~------a~~vdH 60 (423)
-+...++++++|||.||.+.+.++.+...... .. ..+|. ..+-.
T Consensus 300 k~~~~~~vlglSGGiDSal~a~la~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~mp~~y~s~- 378 (634)
T 3ilv_A 300 KSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQST- 378 (634)
T ss_dssp HTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEEC-
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-
T ss_conf 4047776767862055769999999999987776332222245525555445665313334441037898658754467-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC-------------------CCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 798784689999999998718988999975047-------------------8778037888545555432001234420
Q gi|254780546|r 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-------------------PQTGLMAAAREARYALISEHAKTINATL 121 (423)
Q Consensus 61 glr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~-------------------~~~~~~~~ar~~r~~~~~~~~~~~~~~~ 121 (423)
+..+++-....++.|+.+|+++.++.++..- .....++...+.|-..+...+...+...
T Consensus 379 --~~~~d~t~~~A~~la~~lg~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~eNiqaR~R~~~l~~~an~~~~lv 456 (634)
T 3ilv_A 379 --RNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLTNVKQALL 456 (634)
T ss_dssp --TTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHHHHHTCEE
T ss_pred --CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf --761688999999999971881578861089999997644320367676300334441455677999999775479799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHC
Q ss_conf 1234566656689999862365444332235764100357968710121042899999899818
Q gi|254780546|r 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 (423)
Q Consensus 122 l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~ 185 (423)
+.|+ +-.|. ..|-.-. .+...--+-|+-+++|.+++..++..+
T Consensus 457 l~Tg----N~SE~-----a~Gy~T~------------~GD~~~~~~pi~~l~Kt~v~~l~~~~~ 499 (634)
T 3ilv_A 457 ITTS----NRSEG-----DVGYATM------------DGDTAGGIAPIAGVDKDFIRSWLRWAE 499 (634)
T ss_dssp BCCC----CHHHH-----HTTCSCT------------TTTTCSSBBTTTTSCHHHHHHHHHHHH
T ss_pred ECCC----CCCCC-----EECCEEC------------CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8579----87771-----0411031------------587666664016872899999999963
No 40
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=92.07 E-value=0.26 Score=26.80 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=28.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 839999669424899999999999864899729999996
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v 58 (423)
.+|+||+.|...|...+..+.++. ...+.+|+++||
T Consensus 6 k~ILv~vD~S~~s~~al~~a~~~A---~~~~a~l~llhv 41 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK---TLKAEEVILLHV 41 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC---CSSCCEEEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH---HHCCCEEEEEEE
T ss_conf 958999889989999999999998---744996999998
No 41
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=91.89 E-value=0.59 Score=24.23 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=67.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 27998399996694248999999999998648997299999966779878468999999999871898899997504787
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ 95 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~ 95 (423)
+....+|+|++.+...|...+..+..+.+... -+|+++||+. +++...+.+...+.+.+.|.+..+.......+
T Consensus 4 M~~~k~ILV~vd~s~~~~~al~~A~~lA~~~~---a~l~~l~v~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 77 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQ---SHLHLLVCEK--RRDHSAALNDLAQELREEGYSVSTNQAWKDSL- 77 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHC---CEEEEEEECS--SSCCHHHHHHHHHHHHHTTCCEEEEEECSSSH-
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC---CEEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-
T ss_conf 12568699997898779999999999999859---9799999804--48999999999999996499558998417987-
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 780378885455554320012344201234566656
Q gi|254780546|r 96 TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 96 ~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
+..+.+.+.+.+...+..|.+..+.
T Consensus 78 -----------~~~I~~~a~~~~~dlvv~g~~~~~~ 102 (290)
T 3mt0_A 78 -----------HQTIIAEQQAEGCGLIIKQHFPDNP 102 (290)
T ss_dssp -----------HHHHHHHHHHHTCSEEEEECCCSCT
T ss_pred -----------HHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf -----------9999999996599733644677886
No 42
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=91.71 E-value=0.29 Score=26.42 Aligned_cols=104 Identities=10% Similarity=0.173 Sum_probs=56.8
Q ss_pred CCCCEEEEEECCCH---------HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC--------------------CC--
Q ss_conf 79983999966942---------489999999999986489972999999667798--------------------78--
Q gi|254780546|r 17 VYPAHILVAVSGGS---------DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--------------------ET-- 65 (423)
Q Consensus 17 ~~~~~i~vAvSGG~---------DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr--------------------~~-- 65 (423)
..|.||+|||-|.. =|...+..+.+...+.......|+++|+..--. .+
T Consensus 3 ~~~~~ilvavd~s~~~~~~~~~~~S~~Al~wAl~~~~~~~~~~~~l~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNK 82 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99887999973885756778888999999999999986699825999999446665333444544578889999999999
Q ss_pred --HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf --46899999999987189889999750478778037888545555432001234420123456665668
Q gi|254780546|r 66 --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 (423)
Q Consensus 66 --s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~E 133 (423)
+.+-.+.+.+.|++.|+++.+....+ .+ ...+.+.+++.+++.++.|.|-....+
T Consensus 83 ~~~~~~l~~~~~~~~~~~v~~~~~~~~G-~~------------~~~I~~~a~~~~~dlIVmG~~g~~~~~ 139 (175)
T 2gm3_A 83 AKGLHLLEFFVNKCHEIGVGCEAWIKTG-DP------------KDVICQEVKRVRPDFLVVGSRGLGRFQ 139 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEES-CH------------HHHHHHHHHHHCCSEEEEEECCCC---
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEC-CH------------HHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 9999999999999997498268898534-64------------277899999728988996289998666
No 43
>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718}
Probab=90.09 E-value=0.39 Score=25.49 Aligned_cols=99 Identities=21% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC---------------CCCC----HHHHHHHHHHHHHH
Q ss_conf 9839999669424899999999999864899729999996677---------------9878----46899999999987
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---------------LRET----AKDEVRYVSDVCSR 79 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg---------------lr~~----s~~e~~~v~~~~~~ 79 (423)
-.||+||+-|...|.-++..+..+.... +.+|+++||--. .... .+...+...+++..
T Consensus 6 yk~ILvavD~s~~s~~al~~A~~lA~~~---~a~l~~lhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (150)
T 2pfs_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI---GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNT 82 (150)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHHHHH---TCEEEEEEEEC----------CCCCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHH---CCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8869999739989999999999999981---9978866898514455444444554237999999999999999998985
Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 18988999975047877803788854555543200123442012345666566
Q gi|254780546|r 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 (423)
Q Consensus 80 lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~ 132 (423)
.+++.......... -...+.+.+.+.+++.++.|.+.....
T Consensus 83 ~~~~~~~~~~~~g~------------~~~~I~~~a~~~~~dliV~G~~~~~~~ 123 (150)
T 2pfs_A 83 LGIDPAHRWLVWGE------------PREEIIRIAEQENVDLIVVGSHGRHGL 123 (150)
T ss_dssp HTCCGGGEEEEESC------------HHHHHHHHHHHTTCSEEEEEEC-----
T ss_pred CCCCCCEEEEEECC------------HHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 49975279998188------------899999999863876798727999965
No 44
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=89.21 E-value=1 Score=22.62 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=59.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----------------CHHHHHHHHHHHHHHCCCC
Q ss_conf 839999669424899999999999864899729999996677987----------------8468999999999871898
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----------------TAKDEVRYVSDVCSRLRIA 83 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~----------------~s~~e~~~v~~~~~~lgi~ 83 (423)
.||+||++|..+|-.++..+.++..... .+++.+||.--... ...+-.+..+++++..+++
T Consensus 3 k~IlV~vD~s~~s~~al~~A~~la~~~~---a~l~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHD---AKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYP 79 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHT---CEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCC---CCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8399998799899999999999998749---9489999984103332233455579999999999999999999871776
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 899997504787780378885455554320012344201234566
Q gi|254780546|r 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~ 128 (423)
..........+ ...+...+.+.+++.++.|.|.
T Consensus 80 ~~~~~~~~~~~------------~~~i~~~~~~~~~dliVvG~~~ 112 (141)
T 1jmv_A 80 ISEKLSGSGDL------------GQVLSDAIEQYDVDLLVTGHHQ 112 (141)
T ss_dssp CCCEEEEEECH------------HHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEEEECCH------------HHHHHHHHHHCCCCEEEEECCC
T ss_conf 28999960674------------7889999872788889993289
No 45
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=88.33 E-value=1.1 Score=22.22 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCC--------CC---------HHHHHHHHHHHH
Q ss_conf 279983999966942489999999999986489972999999667-798--------78---------468999999999
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLR--------ET---------AKDEVRYVSDVC 77 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH-glr--------~~---------s~~e~~~v~~~~ 77 (423)
.....+|+|++-+-.-|...+..+..+.+.. +.+|+.+||=. ... .+ +.+..+...+.+
T Consensus 19 ~~~~~~ILvp~D~S~~s~~al~~A~~la~~~---~~~i~llhvi~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 95 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVG---VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKI 95 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTT---CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3669979999689989999999999999876---9989999998886544444545668899999999999999998655
Q ss_pred HHCCCCEEE
Q ss_conf 871898899
Q gi|254780546|r 78 SRLRIAHSV 86 (423)
Q Consensus 78 ~~lgi~~~~ 86 (423)
...|++..+
T Consensus 96 ~~~~~~~~v 104 (294)
T 3loq_A 96 EAAGIKAEV 104 (294)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCCEEE
T ss_conf 434985699
No 46
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata}
Probab=86.74 E-value=1.2 Score=22.15 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=56.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC----------CC------------CHHHHHHHHHHHH
Q ss_conf 8399996694248999999999998648997299999966779----------87------------8468999999999
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----------RE------------TAKDEVRYVSDVC 77 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl----------r~------------~s~~e~~~v~~~~ 77 (423)
.+|+||+-|-.+|.-.+..+.++.... +.+++++||-... .+ ...+..+...+.+
T Consensus 3 ~~ILv~vD~S~~s~~al~~A~~la~~~---~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT---GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRA 79 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH---CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 849999789999999999999999872---99899999863776554432324524454479999999999999999999
Q ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 871898899997504787780378885455554320012344201234566
Q gi|254780546|r 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 (423)
Q Consensus 78 ~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~ 128 (423)
.+.|++....+....... -...+.+.+++.+++.++.|.|.
T Consensus 80 ~~~~~~~~~~~~~v~~g~----------~~~~I~~~a~~~~~dliV~G~~~ 120 (147)
T 3hgm_A 80 TELGVPADKVRAFVKGGR----------PSRTIVRFARKRECDLVVIGAQG 120 (147)
T ss_dssp HHTTCCGGGEEEEEEESC----------HHHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHCCCCCEEEEEEECCC----------HHHHHHHHHCCCCCCEEEECCCC
T ss_conf 982899746999996377----------89988775203588889971799
No 47
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=86.40 E-value=1.5 Score=21.48 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=29.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 8399996694248999999999998648997299999966
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vd 59 (423)
.+|+|++-|-..|-..+..+.++.+... .+|+.+||-
T Consensus 3 k~ILv~~D~s~~s~~al~~a~~la~~~~---~~i~llhV~ 39 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHG---ARLIVVHAY 39 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHT---CEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCC---CEEEEEEEE
T ss_conf 8099998899899999999999999839---989999984
No 48
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=84.48 E-value=1.8 Score=20.86 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=54.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC------CHH--------------HHHHHHHHH
Q ss_conf 799839999669424899999999999864899729999996677987------846--------------899999999
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAK--------------DEVRYVSDV 76 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~------~s~--------------~e~~~v~~~ 76 (423)
.+-.||+|++.|..+|-..+..+..+.+... .+++++|+-+.... .++ .+.+...+.
T Consensus 5 ~~~kkILV~~D~s~~~~~al~~A~~lA~~~~---a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNG---GRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY 81 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHC---CEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHC---CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4579399997698889999999999999809---9799999974687533344570156899999999999999999987
Q ss_pred HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 987189889999750478778037888545555432001234420123456665
Q gi|254780546|r 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 77 ~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
+...|++..+.......+.. .+.+.+...+++.++.|.+..+
T Consensus 82 ~~~~~~~~~~~v~~~~~~~~------------~i~~~a~~~~~DLiV~G~~~~~ 123 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYE------------AIIEEVITDKHDLLIKMAHQHD 123 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHH------------HHHHHHHHHTCSEEEEEEBCC-
T ss_pred HHHCCCCEEEEEEECCCHHH------------HHHHHHHHCCCCEEEECCCCCC
T ss_conf 77549955899998688589------------9999999659888974156876
No 49
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes}
Probab=76.63 E-value=3.2 Score=19.07 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=44.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC------------------HHHHHHHHHHHHHHCC
Q ss_conf 8399996694248999999999998648997299999966779878------------------4689999999998718
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------------AKDEVRYVSDVCSRLR 81 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~------------------s~~e~~~v~~~~~~lg 81 (423)
.||+||+.|...|...+..+.++..+. .+..++.+||..-.... +.+..+...+.|.+.|
T Consensus 2 k~Ilv~iD~s~~s~~al~~a~~~~~~~--~~~~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 79 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKG 79 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999879989999999999999855--898899998216654455433345588999999999999999999887649
Q ss_pred CCEEEEEE
Q ss_conf 98899997
Q gi|254780546|r 82 IAHSVVSW 89 (423)
Q Consensus 82 i~~~~~~~ 89 (423)
++..+.-.
T Consensus 80 v~~~~~i~ 87 (138)
T 3idf_A 80 INPFVVIK 87 (138)
T ss_dssp CCCEEEEE
T ss_pred CEEEEEEE
T ss_conf 64999997
No 50
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=75.38 E-value=3.4 Score=18.84 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999998718988999
Q gi|254780546|r 72 YVSDVCSRLRIAHSVV 87 (423)
Q Consensus 72 ~v~~~~~~lgi~~~~~ 87 (423)
.-+++.+++|+...++
T Consensus 97 Le~~L~~~fgL~~~~V 112 (345)
T 2o0m_A 97 IEKEMTQYFGIQRCIV 112 (345)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999829978999
No 51
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=75.09 E-value=3.5 Score=18.79 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=48.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-----------CCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 7998399996694248999999999998648997299999966779-----------87846899999999987189889
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----------RETAKDEVRYVSDVCSRLRIAHS 85 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-----------r~~s~~e~~~v~~~~~~lgi~~~ 85 (423)
++.-||++.++||.-|.-|+.-+++....++. ++++.|+.+.--- .|+-..-...+++.|.+.|||..
T Consensus 4 ~k~~kIlL~C~~GmSSsll~~km~~~a~~~~~-~~~v~A~~~~~~~~~~~~~DviLL~PQv~~~~~~i~~~~~~~~ipv~ 82 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEV-RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIV 82 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTC-SEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEEHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 76346999979997599999999999997699-78999953899998864289999866799999999999877399288
Q ss_pred EEE
Q ss_conf 999
Q gi|254780546|r 86 VVS 88 (423)
Q Consensus 86 ~~~ 88 (423)
+..
T Consensus 83 ~I~ 85 (108)
T 3nbm_A 83 ATR 85 (108)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 728
No 52
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=74.27 E-value=3.3 Score=18.98 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=47.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839999669424899999999999864899729999996677-----------987846899999999987189889999
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----------LRETAKDEVRYVSDVCSRLRIAHSVVS 88 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg-----------lr~~s~~e~~~v~~~~~~lgi~~~~~~ 88 (423)
=||++.+|||.=|.-|+.-+++.....+. ++++.|+.+..- |-|+-......+++.+.+.|+|..++.
T Consensus 5 mkIlL~C~~G~STsllv~km~~~a~~~~~-~~~I~A~~~~~~~~~~~~~DviLL~PQv~y~~~~i~~~~~~~~ipV~~I~ 83 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNI-NATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIIN 83 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTC-SEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 28988878975799999999999998699-77999976899986622998999997388889999998415798299978
Q ss_pred E
Q ss_conf 7
Q gi|254780546|r 89 W 89 (423)
Q Consensus 89 ~ 89 (423)
-
T Consensus 84 ~ 84 (109)
T 2l2q_A 84 T 84 (109)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 53
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=72.59 E-value=4 Score=18.38 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=49.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 79983999966942489999999999986489972999999667798784689999999998718988999975047877
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~ 96 (423)
..|-||+|=+||+. | .|..++.. . .+..+.++.++..|+. +. +.+++++.|||.+++..... .
T Consensus 10 ~~p~riavl~SG~G-s-nl~aLi~~-~--~~~~~~~iv~vi~~~~----~~-----~~~~A~~~gIp~~~i~~~~~---~ 72 (215)
T 3da8_A 10 SAPARLVVLASGTG-S-LLRSLLDA-A--VGDYPARVVAVGVDRE----CR-----AAEIAAEASVPVFTVRLADH---P 72 (215)
T ss_dssp CSSEEEEEEESSCC-H-HHHHHHHH-S--STTCSEEEEEEEESSC----CH-----HHHHHHHTTCCEEECCGGGS---S
T ss_pred CCCCEEEEEECCCC-H-HHHHHHHH-H--CCCCCCEEEEEEECCC----HH-----HHHHHHHCCCCEEEEECCCC---C
T ss_conf 99888999983682-6-59999996-3--7799977999996785----66-----88999983997377405788---9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 803788854555543200123442012345
Q gi|254780546|r 97 GLMAAAREARYALISEHAKTINATLIMTAH 126 (423)
Q Consensus 97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah 126 (423)
+ |...-..+.+..+....+.++++.
T Consensus 73 ~-----r~~~~~~l~~~l~~~~~Dliv~~g 97 (215)
T 3da8_A 73 S-----RDAWDVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp S-----HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred C-----HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9-----999999999998760999999846
No 54
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=67.85 E-value=5 Score=17.69 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=56.7
Q ss_pred CEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH-------HHHHHHHHHHHHHCCCCEEEEEEE-
Q ss_conf 839999669424-89999999999986489972999999667798784-------689999999998718988999975-
Q gi|254780546|r 20 AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-------KDEVRYVSDVCSRLRIAHSVVSWK- 90 (423)
Q Consensus 20 ~~i~vAvSGG~D-S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s-------~~e~~~v~~~~~~lgi~~~~~~~~- 90 (423)
.+|+||+--|+| |.-.+-.+.+++.... .+|+++||-+.-.... .+..+.+.+.+++.|++..+....
T Consensus 25 ~~IlVavD~~S~~s~~al~~A~~~A~~~~---~~l~lvhv~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~ 101 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRG---VPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVR 101 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHT---CCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 73899987959899999999999999839---969999974388777667899999999999999998499948999995
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 047877803788854555543200123442012345666
Q gi|254780546|r 91 NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 (423)
Q Consensus 91 ~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d 129 (423)
...+. ..+.+.+.+.+++.+++|.|..
T Consensus 102 ~g~~~------------~~I~~~a~~~~adLIV~G~~~~ 128 (155)
T 3dlo_A 102 GKEPP------------DDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp SSCHH------------HHHHHHHHHTTCSEEEEECCEE
T ss_pred CCCHH------------HHHHHHHHHCCCCEEEECCCCC
T ss_conf 78989------------9999999872998998568999
No 55
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=65.52 E-value=2.2 Score=20.23 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCHH
Q ss_conf 2104289999989981893202-667864221018
Q gi|254780546|r 169 FLRCRREDIRSFLLQRNISWCE-DPSNTDDRFERV 202 (423)
Q Consensus 169 LL~~~r~~l~~~~~~~~i~wve-DpSN~d~~f~R~ 202 (423)
|-.+.-+|+|+||+++| |+- .|||.. -+|+
T Consensus 26 L~SVDseEVReYCk~kg--Wiv~~~~~~~--iEr~ 56 (60)
T 1ng7_A 26 LQAVDSQEVRDYCEKKG--WIVNITSQVQ--TERN 56 (60)
T ss_dssp HHHHCCHHHHHHHHHHT--CCCCCCSSCC--SCCS
T ss_pred HHHCCCHHHHHHHHHCC--EEECCCCCCH--HHHH
T ss_conf 98638599999999779--1524787520--3223
No 56
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=63.97 E-value=5.2 Score=17.54 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=40.9
Q ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH--HCCCCCEEEEEEEECCCCCC-CHHH-HHHHH-HHHHHHCCCCE
Q ss_conf 998527998399996694248999999999998--64899729999996677987-8468-99999-99998718988
Q gi|254780546|r 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRE-TAKD-EVRYV-SDVCSRLRIAH 84 (423)
Q Consensus 12 ~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~--~~~~~~~~l~a~~vdHglr~-~s~~-e~~~v-~~~~~~lgi~~ 84 (423)
..+.+....++.||+|||.--..+...|.+... .-.+. +++.+.+|--+=+ ++.+ -..++ +.+...++++-
T Consensus 21 i~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~~~~~~l~w~--~v~~f~~DER~V~~~~~~Sn~~~~~~~l~~~~~~~~ 96 (238)
T 1y89_A 21 MLAYSQQGQPVHISLSGGSTPKMLFKLLASQPYANDIQWK--NLHFWWGDERCVAPDDAESNYGEANALLFSKINMPA 96 (238)
T ss_dssp HHHHHTTSSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGG--GEEEEESEEESSCTTSTTCHHHHHHHHTGGGSCCCG
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHH--HEEEEECEEECCCCCCCCCCHHHHHHHCCCCCCCCH
T ss_conf 9999985898899977996799999999865522489815--769995514455876665568777441012235652
No 57
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=62.12 E-value=6.3 Score=16.96 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7998399996694248999999999998648997299999966779878468999999999871898899997
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~ 89 (423)
.++-||+|-+||..-- |-.++..+ +.+..+.++.++.-||- + +..+++..|||+..+.+
T Consensus 103 ~~~~riaIlvS~~g~~--l~~ll~~~--~~g~L~~~i~~ViSN~~---d-------~~~la~~~~ip~~~~~~ 161 (302)
T 3o1l_A 103 AQKKRVVLMASRESHC--LADLLHRW--HSDELDCDIACVISNHQ---D-------LRSMVEWHDIPYYHVPV 161 (302)
T ss_dssp TSCCEEEEEECSCCHH--HHHHHHHH--HTTCSCSEEEEEEESSS---T-------THHHHHTTTCCEEECCC
T ss_pred CCCCEEEEEECCCCCC--HHHHHHHH--HCCCCCEEEEEEECCCH---H-------HHHHHHHHCCCEEEEEC
T ss_conf 6683699998189843--99999998--77998726889825855---3-------78889986399599937
No 58
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=59.79 E-value=6.9 Score=16.69 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=32.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99996694248999999999998648997299999966779878468999999999871898899
Q gi|254780546|r 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86 (423)
Q Consensus 22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~ 86 (423)
++|+.+|=.-++.++.+++.+....+ .++..++.|- .|..+.+ ..+.+|+.+|+|+.+
T Consensus 109 ~lvGptGvGKTTtiaKLAa~~~~~~~---~~v~lit~Dt-~R~~A~e---QLk~~a~~l~vp~~~ 166 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH---KKIAFITTDT-YRIAAVE---QLKTYAELLQAPLEV 166 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC---CCEEEEECCC-SSTTHHH---HHHHHHTTTTCCCCB
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCC-CCHHHHH---HHHHHHHHCCCCCCE
T ss_conf 99899998889999999999999579---9069998079-9768999---999999741798504
No 59
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=59.23 E-value=7.1 Score=16.63 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 989999999985279983999966942489999999999986489972999999
Q gi|254780546|r 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 (423)
Q Consensus 4 ~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~ 57 (423)
+|....-.....+.+.-+|+|++||+.-..-...++.++.++ .+.+|.++.
T Consensus 4 ~~~~~~~~~~p~~~~k~~ILl~vtGsIAayk~~~lv~~L~~~---~g~~V~vv~ 54 (206)
T 1qzu_A 4 EPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDI---PGLEVAVVT 54 (206)
T ss_dssp ------------CCSSEEEEEEECSSGGGGTHHHHHHHHC------CEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH---CCCEEEEEE
T ss_conf 899999855653368866999970489999899999999865---697899998
No 60
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.26.2.4
Probab=58.74 E-value=7.2 Score=16.57 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=56.0
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC------------------CCCHHHHHHHHHHHH
Q ss_conf 27998399996694248999999999998648997299999966779------------------878468999999999
Q gi|254780546|r 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------------------RETAKDEVRYVSDVC 77 (423)
Q Consensus 16 l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl------------------r~~s~~e~~~v~~~~ 77 (423)
...-.+|+|++-|...|...+..+..++.. ....+.++++...- +....+....+.+.+
T Consensus 14 m~~yk~ILV~vD~S~~s~~a~~~a~~lA~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAGA---DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA 90 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHTT---TSEEEEEEECCC--------------------CCTHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 126996999988998999999999999854---89889999982245544445555517789999999999999999999
Q ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 87189889999750478778037888545555432001234420123456665
Q gi|254780546|r 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 78 ~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
.+.+.+.....+...++.. .+...+....++.++.|.+.-+
T Consensus 91 ~~~~~~~~~~~v~~G~~~~------------~i~~~a~~~~~dliV~G~~~~~ 131 (163)
T 1tq8_A 91 HNAGAKNVEERPIVGAPVD------------ALVNLADEEKADLLVVGNVGLS 131 (163)
T ss_dssp HTTTCCEEEEEEECSSHHH------------HHHHHHHHTTCSEEEEECCCCC
T ss_pred HHCCCCEEEEEEECCCHHH------------HHHHHHHHCCCCEEEECCCCCC
T ss_conf 9769971999998278388------------8999987425446754479998
No 61
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=56.73 E-value=7.7 Score=16.34 Aligned_cols=48 Identities=19% Similarity=0.057 Sum_probs=33.3
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf 527998399996694248999999999998648997299999966779
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl 62 (423)
.+....++.||+|||.--..++..+.+........--+++.+.+|.-+
T Consensus 31 ~~~~~~~~~i~lsGG~tp~~~y~~L~~~~~~~~~~~~~v~~~~~DER~ 78 (266)
T 3eb9_A 31 SGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREKRALRFFMGDERM 78 (266)
T ss_dssp HCGGGCSEEEEECCSHHHHHHHHHHHHHHHHHHTTSCCEEEEESEEES
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEC
T ss_conf 998689989998287889999999986403016652428999653453
No 62
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=56.71 E-value=7.7 Score=16.34 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=41.7
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCHH--HHHHHHHHHHHHCCCCE
Q ss_conf 9852799839999669424899999999999864899729999996677--987846--89999999998718988
Q gi|254780546|r 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAK--DEVRYVSDVCSRLRIAH 84 (423)
Q Consensus 13 ~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHg--lr~~s~--~e~~~v~~~~~~lgi~~ 84 (423)
.+.+....+..+++|||.--..+...|.+.......+--+++.+.+|-- ...+.. .....-+.+....+++.
T Consensus 21 ~~~i~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~~~~~DEr~~~~~~~~~s~~~~~~~~l~~~~~~~~ 96 (242)
T 2bkx_A 21 ADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKP 96 (242)
T ss_dssp HHHHHHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTGGGSCCCG
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECEEECCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 9999978898999798540999999999876226887467799956586079988604399999973202877587
No 63
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.44 E-value=8.1 Score=16.20 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 99999998527998399996694248--99999999999864899729999996677987
Q gi|254780546|r 7 ESVRFFVRSLVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 (423)
Q Consensus 7 ~~~~~~~~~l~~~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~ 64 (423)
+.+.+.+..+....+++||++||+=| +.++..+++..... ......++.|+-..+
T Consensus 8 ~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~---~~~~~~~~~~~~~~~ 64 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMDDHIVE 64 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGCCC
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC---CCCEEEECHHHCCCC
T ss_conf 999999970567998899988989889999999999983524---776022010101124
No 64
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=54.05 E-value=8.5 Score=16.05 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=41.6
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHH--HHHHH-HHHHHHCCCCE
Q ss_conf 527998399996694248999999999998648997299999966779878468--99999-99998718988
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYV-SDVCSRLRIAH 84 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~--e~~~v-~~~~~~lgi~~ 84 (423)
.+....++.||+|||.--..|+..|......-.+. +++.+.+|--+=+..+. -...+ +.+...++|+-
T Consensus 50 ~i~~~g~~~i~lsGGstp~~ly~~L~~~~~~ldw~--kv~~f~~DER~Vp~~~~~SN~~~~~~~ll~~~~i~~ 120 (268)
T 3ico_A 50 AVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWS--KVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPS 120 (268)
T ss_dssp HHHHHSCEEEEECCSHHHHHHHHHHHHHGGGSCGG--GEEEEESEEECSCTTCTTCHHHHHHHHTGGGSCCCG
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHH--HEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCH
T ss_conf 99978988999878964999999997543159824--669996113736998875879999999763268837
No 65
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structural genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli O157} SCOP: c.34.1.1
Probab=53.68 E-value=8.6 Score=16.01 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=23.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 399996694248999999999998648997299999
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~ 56 (423)
||+||+||++-+.--..++..+.+. .+.+++++
T Consensus 2 rIvvgITGasga~~a~~ll~~L~~~---~g~eV~vV 34 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREM---PNVETHLV 34 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTC---TTCEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHC---CCCEEEEE
T ss_conf 8999971189999999999999733---89879999
No 66
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=53.35 E-value=8.7 Score=15.97 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999998718988999975047877-80378885455554320012344201234566656
Q gi|254780546|r 72 YVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 72 ~v~~~~~~lgi~~~~~~~~~~~~~~-~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
.-+++.+++|+...++--....... -.+.-++.+ ..++....+......+..|.+...-
T Consensus 12 Le~~L~~kfgL~~~~Vv~~~~~~~~~~~~~l~~aa-A~~L~~~l~~~~~igvswG~T~~~~ 71 (255)
T 2okg_A 12 LEKTLKERLNLKDAIIVSGDSDQSPWVKKEMGRAA-VACMKKRFSGKNIVAVTGGTTIEAV 71 (255)
T ss_dssp HHHHHHHHSCCSEEEEESSCTTTCTHHHHHHHHHH-HHHHHHHCCSEEEEEECCSHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 99999998399889996699887669999999999-9999986579988999567899999
No 67
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=52.76 E-value=8.9 Score=15.91 Aligned_cols=141 Identities=8% Similarity=0.005 Sum_probs=65.1
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH--------CCCCCCCCHH
Q ss_conf 99999966779878468999999999871898899997504787780378885455554320--------0123442012
Q gi|254780546|r 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH--------AKTINATLIM 123 (423)
Q Consensus 52 ~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~--------~~~~~~~~l~ 123 (423)
.+..+.-|-|.+... ..+....+..|.++--.............||......+... ....|-..+.
T Consensus 31 ~iAIVIDD~G~~~~~------~~~ai~~Lp~pvT~Ai~P~~~~~~~~a~~ar~~G~EvllhlPMep~~~~~~~~gp~~L~ 104 (261)
T 2qv5_A 31 RVAIVVGGLGLSQTG------SQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLL 104 (261)
T ss_dssp EEEEEEEEETSCHHH------HHHHHHHSCTTSEEEEETTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBC
T ss_pred EEEEEEECCCCCCHH------HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 699999579999378------99999858997379987899777999999997798799976667668887888855456
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 34566656689999862365444332235764100357968710121042899999899818932026678642210189
Q gi|254780546|r 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 (423)
Q Consensus 124 ~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~R~r 203 (423)
++-..++....+.-.+.+.-+..|. ..-|. +.+-.+-... +.+.+.++++|+-|+|+.|+.+....++-
T Consensus 105 ~~~~~~~i~~~l~~~l~~vP~avGv--nNhmG-S~~t~~~~~m--------~~v~~~l~~~gL~fvDS~T~~~Sva~~~A 173 (261)
T 2qv5_A 105 AGDPAKVNIDRLHRSMAKITNYTGV--MNYLG-GRFLAEQSAL--------EPVMRDIGKRGLLFLDDGSSAQSLSGGIA 173 (261)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCSEE--EEEEC-TTGGGCHHHH--------HHHHHHHHHTTCEEEECSCCTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEE--ECCCC-CHHHCCHHHH--------HHHHHHHHHCCCEEEECCCCCCCHHHHHH
T ss_conf 6788999999999999869862998--34655-2012698999--------99999998779889946998774899999
Q ss_pred HHHHHH
Q ss_conf 997643
Q gi|254780546|r 204 VRRFVR 209 (423)
Q Consensus 204 lR~~l~ 209 (423)
-+..+.
T Consensus 174 ~~~gvp 179 (261)
T 2qv5_A 174 KAISAP 179 (261)
T ss_dssp HHHTCC
T ss_pred HHCCCC
T ss_conf 975998
No 68
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=49.68 E-value=9.9 Score=15.58 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
Q ss_conf 99999998527998399996694248--9999999999986489972999999667798784
Q gi|254780546|r 7 ESVRFFVRSLVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 (423)
Q Consensus 7 ~~~~~~~~~l~~~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s 66 (423)
.....|+..-.....++||++|++=| +.++..++.+..+... ..++..++.|.=+.+++
T Consensus 66 ~~~~~fl~~~~~k~P~IIGIaG~sgsGKSTla~~L~~lL~~~~~-~~~v~lis~D~F~~~~~ 126 (308)
T 1sq5_A 66 AVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE-HRRVELITTDGFLHPNQ 126 (308)
T ss_dssp HHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-CCCEEEEEGGGGBCCHH
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHH
T ss_conf 99999846889999689999899988799999999999710169-99659985351528806
No 69
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4
Probab=47.89 E-value=6 Score=17.13 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-+.+.-..|+.+.+.+++.|+.-++|-||-|-
T Consensus 64 i~l~~~lG~~~yRfSi~WsRi~P~g~g~~n~~~l~~Y~~~i~~l~~~gi~P~vTL~H~~~ 123 (449)
T 1qox_A 64 VQLLKDLGVKVYRFSISWPRVLPQGTGEVNRAGLDYYHRLVDELLANGIEPFCTLYHWDL 123 (449)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999998199989810679983748989869999999999999999859978885237767
No 70
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferase, sugar transport, phosphorylation; NMR {Escherichia coli K12} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=47.53 E-value=11 Score=15.36 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 9839999669424899999999999864899729999996
Q gi|254780546|r 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 (423)
Q Consensus 19 ~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v 58 (423)
+-+|++.+|||.=|+-|+.-+++....++. ++.+.|+.+
T Consensus 3 ~k~IlL~C~~G~STs~l~~km~~~a~~~~~-~~~i~A~~~ 41 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEV-PVIIEAFPE 41 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCC-SEEEEEECS
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCC-CEEEEEEEH
T ss_conf 888999848961199999999999998799-889999407
No 71
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4
Probab=46.49 E-value=6.5 Score=16.88 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=45.7
Q ss_pred HHHHHHCCCCEEEEEEECC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+.++-..+++. .|.++.-+.+--..|+.+.+.+++.|+.-++|-||-|--
T Consensus 56 i~ll~~lG~~~yRfSIsWsRI~P~~g~~n~~gl~~Y~~~i~~l~~~gI~P~vTL~H~d~P 115 (423)
T 1vff_A 56 IQLMTSLGYNAYRFSIEWSRLFPEENKFNEDAFMKYREIIDLLLTRGITPLVTLHHFTSP 115 (423)
T ss_dssp HHHHHHHTCCEEEEECCHHHHCSBTTBCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 999998199989815769980478998484899999999999997299774663168874
No 72
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A
Probab=46.28 E-value=6.2 Score=17.04 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|..+.+.+++.|+.-++|-||-|-
T Consensus 77 i~Ll~~lG~~~yRfSI~WsRI~P~g~g~~n~~gi~~Y~~~i~~l~~~GI~P~VTL~Hfdl 136 (479)
T 1gnx_A 77 VALMAELGLGAYRFSLAWPRIQPTGRGPALQKGLDFYRRLADELLAKGIQPVATLYHWDL 136 (479)
T ss_dssp HHHHHHTTCSEEEEECCHHHHSGGGSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHCCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999998199868734669991347888659999999999999999809967898637787
No 73
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=46.03 E-value=11 Score=15.20 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=23.9
Q ss_pred CCCCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 7998399996694248--9999999999986489972999999667
Q gi|254780546|r 17 VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDH 60 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdH 60 (423)
.+...++||+|||.=| +.|...+.............+.++.+|-
T Consensus 27 ~~~~P~iIgiaG~~GSGKSTla~~l~~~l~~~~~~~~~v~~iSlDd 72 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 8999989996789878899999999999997528887079963456
No 74
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=45.25 E-value=12 Score=15.12 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=40.4
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHH--HHHHHH-HHHHHCCCCE
Q ss_conf 527998399996694248999999999998648997299999966779878468--999999-9998718988
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVS-DVCSRLRIAH 84 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~--e~~~v~-~~~~~lgi~~ 84 (423)
.+....++.|++|||.--..++..+.+...+-.+. +++.+.+|--+=+..+. -..+++ .+...++++.
T Consensus 34 ~i~~~~~~~l~lsGGstp~~~y~~L~~~~~~i~w~--~v~~~~~DER~v~~~~~~Sn~~~~~~~l~~~~~~~~ 104 (248)
T 3oc6_A 34 AIGERGQATIVLTGGGTGIGLLKRVRERSGEIDWS--KVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPP 104 (248)
T ss_dssp HHHHHSCEEEEECCSHHHHHHHHHHHHTGGGSCGG--GEEEEESEEECSCTTCTTCHHHHHHHHTGGGSCCCG
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCH--HEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
T ss_conf 99858998999828817899999998863469822--358983541114755677779999999985328874
No 75
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} SCOP: c.118.1.1
Probab=44.85 E-value=12 Score=15.08 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf 69899999999852799839999669424899999999999864
Q gi|254780546|r 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46 (423)
Q Consensus 3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~ 46 (423)
+.|...|++++.....+.-++||+ |+=|..|+..+.+....+
T Consensus 34 v~P~~~v~~~l~~~~~~~i~vvg~--GKAa~~MA~a~~~~lg~~ 75 (429)
T 2b8n_A 34 VFPDRAVKETLPKLNLDRVILVAV--GKAAWRMAKAAYEVLGKK 75 (429)
T ss_dssp TSHHHHHHTTHHHHCCCSEEEEEE--STTHHHHHHHHHHHHGGG
T ss_pred HCHHHHHHHHCCCCCCCCEEEEEE--HHHHHHHHHHHHHHHCCC
T ss_conf 198999998577579998899998--499999999999972776
No 76
>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444}
Probab=44.02 E-value=12 Score=15.00 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=7.0
Q ss_pred EEEECCCHHHH
Q ss_conf 99966942489
Q gi|254780546|r 23 LVAVSGGSDSM 33 (423)
Q Consensus 23 ~vAvSGG~DS~ 33 (423)
+||-|++.|--
T Consensus 8 iiAPss~~~~~ 18 (274)
T 3g23_A 8 ICAPSTPFTRE 18 (274)
T ss_dssp EECSSSCCCHH
T ss_pred EEECCCCCCHH
T ss_conf 99489999877
No 77
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima}
Probab=42.26 E-value=13 Score=14.81 Aligned_cols=22 Identities=14% Similarity=-0.241 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4566656689999862365444
Q gi|254780546|r 125 AHTFDDQLETVYMRSQRDYAEK 146 (423)
Q Consensus 125 ah~~dD~~Et~l~rl~r~sg~~ 146 (423)
|.-+|=-+|-|+--.+|-+|..
T Consensus 289 GFGaDLGaEKF~dIkcr~~gl~ 310 (543)
T 3do6_A 289 GFGADLGAEKFIDFVSRVGGFY 310 (543)
T ss_dssp SSSTTTHHHHHHHTHHHHHTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4456667632478745567899
No 78
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Probab=42.13 E-value=8.1 Score=16.20 Aligned_cols=57 Identities=25% Similarity=0.238 Sum_probs=44.5
Q ss_pred HHHHHCCCCEEEEEEECC--CCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999871898899997504--787--780378885455554320012344201234566656
Q gi|254780546|r 75 DVCSRLRIAHSVVSWKNS--KPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 75 ~~~~~lgi~~~~~~~~~~--~~~--~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
++++++|+..+-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|=-
T Consensus 64 ~l~~~lG~~~yRfSi~WsRI~P~g~~g~~n~~gl~~Y~~~id~l~~~GI~P~vTL~HfdlP 124 (469)
T 2e9l_A 64 KCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLP 124 (469)
T ss_dssp HHHHHHTCSEEEEECCHHHHSTTSSTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCH
T ss_conf 9999829998974476998532787786479999999999999998299721033687773
No 79
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB: 3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A* 2rgl_A*
Probab=41.94 E-value=9.5 Score=15.71 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=44.3
Q ss_pred HHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r 75 DVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 75 ~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
++++++|+.++-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|--
T Consensus 80 ~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~Gi~P~vTL~H~d~P 139 (481)
T 3f5l_A 80 NLMKSLNFDAYRFSISWSRIFPDGEGRVNQEGVAYYNNLINYLLQKGITPYVNLYHYDLP 139 (481)
T ss_dssp HHHHHTTCCEEEEECCHHHHCTTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEESCSSCCB
T ss_pred HHHHHCCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 999983999898757899858589898699999999999999998599464321488755
No 80
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A*
Probab=41.69 E-value=7.4 Score=16.47 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHCCCCEEEEEEECC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+..+-..+++. .|.++.-+.+--..|..+.+.+.+.|+.-++|-||-|--
T Consensus 73 i~l~~~lG~~~yRfSI~WsRI~P~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H~dlP 132 (454)
T 2o9p_A 73 VQLMKQLGFLHYRFSVAWPRIMPAAGIINEEGLLFYEHLLDEIELAGLIPMLTLYHWDLP 132 (454)
T ss_dssp HHHHHTTTCCEEEEECCHHHHCSSTTCCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 999998199968802769870379998698999999999999998498323046799989
No 81
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*
Probab=41.60 E-value=8.5 Score=16.06 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+.++-..+++. .|. .+.-+.+.-..|+.+.+.+++.|+.-++|-||-|--
T Consensus 76 i~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~HfdlP 136 (488)
T 3gnp_A 76 IQLMADMGMDAYRFSIAWSRIYPNGVGQVNQAGIDHYNKLIDALLAKGIQPYVTLYHWDLP 136 (488)
T ss_dssp HHHHHHHTCCEEEEECCHHHHCTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9999980989787667899857789898699999999999999998199687864389876
No 82
>1e4i_A Beta-glucosidase; glycosyl hydrolase, family 1 glycosyl hydrolase, covalent enzyme-glycoside intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*
Probab=41.29 E-value=8.7 Score=15.97 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=44.1
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-..+--..|..+.+.+.+.|+.-++|-||-|-
T Consensus 64 i~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~~l~~Y~~~i~~l~~~GI~P~VTL~H~d~ 123 (447)
T 1e4i_A 64 IRLMKELGIRTYRFSVSWPRIFPNGDGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDL 123 (447)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSTTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999998099989801659980768989869999999999999999749867886348877
No 83
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=41.17 E-value=13 Score=14.70 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=71.4
Q ss_pred HHHHHHHHHC-CCCCEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999852-7998399996694248---99999999999864899729999996677987846899999999987189
Q gi|254780546|r 7 ESVRFFVRSL-VYPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 (423)
Q Consensus 7 ~~~~~~~~~l-~~~~~i~vAvSGG~DS---~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi 82 (423)
+.++..+..- ...+.|++.+|-|.-. ..+...+.........| +++|.|||- +.+.|.+ |-+.|+
T Consensus 28 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~a~~~~Vp----valHlDH~~------~~e~i~~-ai~~Gf 96 (305)
T 1rvg_A 28 EFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEARVP----VAVHLDHGS------SYESVLR-ALRAGF 96 (305)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC----EEEEEEEEC------SHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHCCCC----EEEECCCCC------CHHHHHH-HHHCCC
T ss_conf 99999999999969999999874577664389999999987665999----899745557------9888999-987499
Q ss_pred CEEEEEEECCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCHH-------HH-----HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88999975047--877803788854555543200123442012-------34-----56665668999986236544433
Q gi|254780546|r 83 AHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIM-------TA-----HTFDDQLETVYMRSQRDYAEKGM 148 (423)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~-------~a-----h~~dD~~Et~l~rl~r~sg~~g~ 148 (423)
. ++=+|... -..|+....+...|..-....-+.....+. .. -+--++++.|.- .+|++.+
T Consensus 97 t--SVMiDgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~Peea~~Fv~----~TgvD~L 170 (305)
T 1rvg_A 97 T--SVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFME----RTGADYL 170 (305)
T ss_dssp S--EEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHH----HHCCSEE
T ss_pred C--EEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHCCCEE
T ss_conf 8--798649988889999999999998615188766502212565555566643245689999999999----7588768
Q ss_pred CCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 2235764100357968710121042899999899818932026
Q gi|254780546|r 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 (423)
Q Consensus 149 ~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveD 191 (423)
..+-.. .--.+.+ -..|.|.+ +.|.+..+...+|-+--
T Consensus 171 AvaiGn-~HG~yk~--~~~~~l~~--~~l~~i~~~~~~PLvlH 208 (305)
T 1rvg_A 171 AVAIGT-SHGAYKG--KGRPFIDH--ARLERIARLVPAPLVLH 208 (305)
T ss_dssp EECSSC-CSSSBCS--SSSCCCCH--HHHHHHHHHCCSCEEEC
T ss_pred EEEECC-CCCCCCC--CCCCCCHH--HHHHHHHCCCCCCEEEE
T ss_conf 543022-4576688--88866248--89999961679987866
No 84
>3ahz_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese enhancement, hydro; 1.34A {Neotermes koshunensis} PDB: 3ai0_A*
Probab=40.84 E-value=8.8 Score=15.96 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=45.5
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787--780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~--~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+..+-..+++. .|. .+.-+.+--..|..+.+.+++.|+.-++|-||-|--
T Consensus 72 i~L~~~lG~~~yRfSI~WsRI~P~g~~g~~n~~gl~~Y~~~id~l~~~GIeP~vTL~Hfd~P 133 (487)
T 3ahz_A 72 VKILKELGAQVYRFSISWARVLPEGHDNIVNQDGIDYYNNLINELLANGIEPMVTMYHWDLP 133 (487)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSTTSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 99999819896874477998486888898799999999999999998188124413388870
No 85
>3lwd_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.75A {Chromohalobacter salexigens}
Probab=40.80 E-value=13 Score=14.66 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 852799839999669424899999999999864899729999996677987
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~ 64 (423)
+.+.+..++.|++|||.--..+...+.+ ...+--+++.+.+|--+=+
T Consensus 27 ~~i~~~~~~~l~lsGG~tp~~~y~~L~~----~~l~w~~v~~~~~DEr~v~ 73 (226)
T 3lwd_A 27 ADLAKRERALLVVSGGSTPKPFFTSLAA----KALPWARVDVTLADERWVT 73 (226)
T ss_dssp HHHTTSSCEEEEECCSSTTHHHHHHHHT----SCSCGGGEEEEESEEESSC
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHH----CCCCCHHEEEEEEEEEECC
T ss_conf 9998669989997797679999999986----1698056268850367516
No 86
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...
Probab=40.78 E-value=9.5 Score=15.70 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|-
T Consensus 87 i~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~H~dl 146 (468)
T 2j78_A 87 IEIIEKLGVKAYRFSISWPRILPEGTGRVNQKGLDFYNRIIDTLLEKGITPFVTIYHWDL 146 (468)
T ss_dssp HHHHHHTTCCEEEEECCHHHHSTTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 999998199989832749980248988659999999999999999849963011137888
No 87
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Probab=39.98 E-value=9.8 Score=15.60 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=44.2
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787---78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~---~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|-
T Consensus 84 i~L~~elG~~~yRfSI~WsRI~P~G~~~g~~n~~gl~~Y~~~id~l~~~GI~P~VTL~Hfdl 145 (512)
T 1v08_A 84 VRLLKEMGMDAYRFSISWPRILPKGTKEGGINPDGIKYYRNLINLLLENGIEPYVTIFHWDV 145 (512)
T ss_dssp HHHHHHTTCSEEEEECCHHHHSTTSSTTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999829897881476987488988789859999999999999999838720366305557
No 88
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3}
Probab=39.02 E-value=14 Score=14.47 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHC-----------CCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 69899999999852-----------799839999669424899999999999
Q gi|254780546|r 3 LSPIESVRFFVRSL-----------VYPAHILVAVSGGSDSMGLLIALHSVL 43 (423)
Q Consensus 3 ~~p~~~~~~~~~~l-----------~~~~~i~vAvSGG~DS~aLl~ll~~~~ 43 (423)
..|...+++.++-- ....||.| ++-|+=+..|+..+.+..
T Consensus 21 v~P~~~v~~~l~~~~~~l~v~~~~~~~~g~i~v-vg~GKAa~~MA~a~~~~l 71 (440)
T 1x3l_A 21 ADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYV-IALGKAACEMARAIEDIL 71 (440)
T ss_dssp TCHHHHHHHHEEECSSEEEETTEEEECCSCEEE-EEESTTHHHHHHHHHHHS
T ss_pred CCHHHHHHHHCCCCCCCEEECCCCCCCCCCEEE-EEECHHHHHHHHHHHHHH
T ss_conf 199999998727578823556763588898899-998789999999999970
No 89
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum aestivum}
Probab=38.42 E-value=10 Score=15.47 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+..+-..+++. .|. .+.-+.+--..|..+.+.+.+.|+.-++|-||-|--
T Consensus 134 i~L~~~lG~~ayRfSIsWsRI~P~g~g~~n~~gl~~Y~~lId~L~~~GI~PiVTL~HfdlP 194 (565)
T 2dga_A 134 VKALKDMGMKVYRFSISWSRILPDGTGKVNQAGIDYYNKLINSLIDNDIVPYVTIWHWDTP 194 (565)
T ss_dssp HHHHHHHTCSEEEEECCHHHHCTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHCCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 9999984999787546687656589898699999999999999998499545630179987
No 90
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str}
Probab=38.27 E-value=15 Score=14.40 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHCCCCCEEE-EEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCCC-----CCHHHH-HHHHHHHHHHCCCCE
Q ss_conf 8527998399-996694248--9999999999986489972999999667798-----784689-999999998718988
Q gi|254780546|r 14 RSLVYPAHIL-VAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLR-----ETAKDE-VRYVSDVCSRLRIAH 84 (423)
Q Consensus 14 ~~l~~~~~i~-vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr-----~~s~~e-~~~v~~~~~~lgi~~ 84 (423)
+.|.++++|. ||-|+|.+. ...+....+..... ++++ +.-+|-.+ ..++++ ++...+...+=.|..
T Consensus 8 ~~Lk~GD~I~viAPSs~~~~~~~~~~~~~~~~L~~~---G~~v--~~~~~~~~~~~~~agt~~~Ra~dl~~a~~d~~i~a 82 (336)
T 3gjz_A 8 KSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQK---GFHI--LEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSC 82 (336)
T ss_dssp CCCCTTCEEEEECSSCCHHHHCHHHHHHHHHHHHHT---TCEE--EECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEE
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCEE--EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 999986999999589866554999999999999868---9999--87752033467567999999999999854888899
Q ss_pred E
Q ss_conf 9
Q gi|254780546|r 85 S 85 (423)
Q Consensus 85 ~ 85 (423)
.
T Consensus 83 I 83 (336)
T 3gjz_A 83 I 83 (336)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 91
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans}
Probab=37.85 E-value=11 Score=15.19 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=44.4
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+..+-..+++. .|. .+.-+.+--..|..+.+.+.+.|+.-++|-||-|--
T Consensus 65 i~l~~~lG~~~yRfsi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H~~~P 125 (453)
T 3ahx_A 65 VQLLKSLGIKSYRFSIAWPRIFPKGFGEINQKGIQFYRDLIDELIKNDIEPAITIYHWDLP 125 (453)
T ss_dssp HHHHHHTTCCEEEEECCHHHHCTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECEECCCCCCH
T ss_conf 9999980999898006799805689887799999999999999997498778031688864
No 92
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 1vsm_A 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=37.69 E-value=15 Score=14.33 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6942489999999999986489972999999667798784689999999998718988999
Q gi|254780546|r 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV 87 (423)
Q Consensus 27 SGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~ 87 (423)
..+.++......+.++....+.+. .++.|+|- .......+++|.++||.+...
T Consensus 46 ~~~~~~~~~~~~l~~~~~~~g~P~----~i~sDnG~----~f~s~~~~~~l~~~gI~~~~~ 98 (162)
T 1cxq_A 46 HGRVTSVAAQHHWATAIAVLGRPK----AIKTDNGS----CFTSKSTREWLARWGIAHTTG 98 (162)
T ss_dssp ESSCCHHHHHHHHHHHHHHHCCCS----EEECCSCH----HHHSHHHHHHHHHHTCEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCE----EEEECCCC----CCCCHHHHHHHHHCCEEEEEC
T ss_conf 589689999999999999879981----99987997----533678999887169087007
No 93
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME disease, non-hodgkin lymphomas; 2.20A {Borrelia burgdorferi B31}
Probab=37.32 E-value=15 Score=14.30 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC--CCCHH--HHHHHHHHHHHHCCCCE
Q ss_conf 998399996694248999999999998648997299999966779--87846--89999999998718988
Q gi|254780546|r 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAK--DEVRYVSDVCSRLRIAH 84 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl--r~~s~--~e~~~v~~~~~~lgi~~ 84 (423)
+...+.||+|||..=..+...+.+........--+++.+.+|--+ ..++. .....-+.+...++++-
T Consensus 52 ~~~~~~iaLsgG~TP~~~y~~L~~~~~~~~idw~~v~~f~~DEr~~v~~~~~~S~~~~~~~~l~~~~~i~~ 122 (289)
T 3hn6_A 52 KENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKK 122 (289)
T ss_dssp TTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCEECCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 38985999799848999999999887526998679799947354268988503199999998653467638
No 94
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S, lyase; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=37.30 E-value=15 Score=14.29 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=26.0
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 527998399996694248999999999998648997299999966
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vd 59 (423)
...++.||+|++|||.-..=...++..+. +. .+|.++--.
T Consensus 15 ~~~~k~rIllgvtGsIAayK~~~lir~L~--~~---~~V~vv~T~ 54 (209)
T 1mvl_A 15 TTPRKPRVLLAASGSVAAIKFGNLCHCFT--EW---AEVRAVVTK 54 (209)
T ss_dssp ----CCEEEEEECSSGGGGGHHHHHHHHH--TT---SEEEEEECT
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHHH--CC---CEEEEEECH
T ss_conf 89999869999816999999999999986--17---869999755
No 95
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=36.83 E-value=13 Score=14.66 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=12.0
Q ss_pred CEE-EEEECCCHHHHHHHHHHHH
Q ss_conf 839-9996694248999999999
Q gi|254780546|r 20 AHI-LVAVSGGSDSMGLLIALHS 41 (423)
Q Consensus 20 ~~i-~vAvSGG~DS~aLl~ll~~ 41 (423)
++| +||-|++.|.-.+-.....
T Consensus 18 d~I~iiAPSs~~~~e~~~~~~~~ 40 (311)
T 1zl0_A 18 GRVALIAPASAIATDVLEATLRQ 40 (311)
T ss_dssp SEEEEECCSBCCCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999958998899999999999
No 96
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans}
Probab=36.69 E-value=15 Score=14.23 Aligned_cols=57 Identities=7% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCCEEEEEECCCHHHH-HHHHHHHHHHHHCCCCCEEEEEEEECCCCC---C--CHHHHHHHHHHHH
Q ss_conf 79983999966942489-999999999986489972999999667798---7--8468999999999
Q gi|254780546|r 17 VYPAHILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLR---E--TAKDEVRYVSDVC 77 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~-aLl~ll~~~~~~~~~~~~~l~a~~vdHglr---~--~s~~e~~~v~~~~ 77 (423)
-++.||++|+|||.-+. ..+.++..+.+ . +.+++++-=+.+.+ + .+.++.+.++.++
T Consensus 5 l~gK~I~lgITGs~a~~~~~l~li~~L~~-~---g~~V~vI~S~~A~~~vt~~~~~~~~~~~~~~lt 67 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVE-L---GAKVTPFVTHTVQTTDTKFGESSEWINKIKQIT 67 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHH-T---TCEEEEECSSCSCCTTCCTTCSCHHHHHHHHHC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHH-C---CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78998999975859999999999999998-8---996999977428866334001788888999996
No 97
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3}
Probab=36.64 E-value=15 Score=14.22 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=29.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 839999669424899999999999864899729999996
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~v 58 (423)
.+|+||+.|..-|...+..+.++.. ..+.+|+++||
T Consensus 6 k~ILv~vD~S~~s~~a~~~a~~la~---~~~a~l~llhV 41 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNK---MEVGEVILLHV 41 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCC---SCCSEEEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHH---HCCCEEEEEEE
T ss_conf 9799997499899999999999987---63997999999
No 98
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=36.41 E-value=16 Score=14.20 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=4.9
Q ss_pred EEEECCCCCCCH
Q ss_conf 999667798784
Q gi|254780546|r 55 AISVDHCLRETA 66 (423)
Q Consensus 55 a~~vdHglr~~s 66 (423)
++.|+...|++|
T Consensus 6 il~i~gSpr~~g 17 (184)
T 1rli_A 6 IAVINGGTRSGG 17 (184)
T ss_dssp EEEEESSCSSCC
T ss_pred EEEEECCCCCCC
T ss_conf 999988899787
No 99
>1e4m_M Myrosinase; hydrolase, family 1 glycosyl hydrolase, glucosinolate, TIM barrel; HET: NAG FUC BMA MAN; 1.2A {Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M* 1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M* 2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M* 1myr_A*
Probab=36.31 E-value=14 Score=14.61 Aligned_cols=56 Identities=18% Similarity=0.033 Sum_probs=42.8
Q ss_pred HHHHHCCCCEEEEEEECC--CCCCC---CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 999871898899997504--78778---037888545555432001234420123456665
Q gi|254780546|r 75 DVCSRLRIAHSVVSWKNS--KPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 75 ~~~~~lgi~~~~~~~~~~--~~~~~---~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
++++++|+..+-..+++. .|.+. .-+.+--..|..+.+.+++.|+.-++|-||-|=
T Consensus 84 ~l~~~lG~~~yRfSI~WsRI~P~g~~~g~~n~~gl~~Y~~lid~l~~~GI~P~VTL~Hfdl 144 (501)
T 1e4m_M 84 DVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDL 144 (501)
T ss_dssp HHHHHHTCSEEEEECCHHHHCTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHCCCEEECCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9999859896762464664212688778879999999999999999729964487777788
No 100
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=36.30 E-value=16 Score=14.19 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred CCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
Q ss_conf 98399996694248--9999999999986489972999999667798784
Q gi|254780546|r 19 PAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 (423)
Q Consensus 19 ~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s 66 (423)
+..++||++||+=| +.++..++....+.+. ..++.+++.|.=..+.+
T Consensus 88 ~~PfIIGIaG~sgSGKST~a~~L~~lL~~~~~-~~~v~~is~D~f~~~~~ 136 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDH-HPRVDLVTTDGFLYPNA 136 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT-CCCEEEEEGGGGBCCHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCH
T ss_conf 99889998898987899999999999853078-99659995555537703
No 101
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese enhancement, hydro; 1.63A {Trichoderma reesei}
Probab=36.10 E-value=12 Score=14.97 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHCCCCEEEEEEECC--CCCCCC---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787780---37888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~~~~---~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+..+-..+++. .|.++. -+.+--..|+.+.+.+++.|+.-++|-||-|=
T Consensus 68 i~l~~~lG~~~yRfSI~WsRI~P~g~~~~~~n~~gl~~Y~~~id~l~~~GI~P~vTL~Hfdl 129 (473)
T 3ahy_A 68 IALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAGITPFITLFHWDL 129 (473)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSSSCSTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99999859898983364987055798788779899999999999998579767888744778
No 102
>3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A*
Probab=35.97 E-value=16 Score=14.15 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHC---CCCCEEE-EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9769899999999852---7998399-99669424899999999999864899729999996677987846899999999
Q gi|254780546|r 1 MFLSPIESVRFFVRSL---VYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 (423)
Q Consensus 1 ~~~~p~~~~~~~~~~l---~~~~~i~-vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~ 76 (423)
|.++|.. .+|+..+ .+|.+|+ |+..-|.-++.|+.++. ... .+++||. +.+.++.+++.
T Consensus 40 ~~i~~~~--g~~L~~lv~~~kpk~iLEiGt~~G~Stl~la~al~--------~~g--~v~~id~-----~~~~~~~ar~~ 102 (221)
T 3hvi_A 40 MNVGDAK--GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQ--------PGA--RLLTMEM-----NPDYAAITQQM 102 (221)
T ss_dssp CCCHHHH--HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCC--------TTC--EEEEECC-----CHHHHHHHHHH
T ss_pred CCCCHHH--HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC--------CCC--EEEEEEC-----CCHHHHHHHHH
T ss_conf 6508999--99999999861999999971474299999998579--------997--8999988-----84125899999
Q ss_pred HHHCCCCEEEEEE
Q ss_conf 9871898899997
Q gi|254780546|r 77 CSRLRIAHSVVSW 89 (423)
Q Consensus 77 ~~~lgi~~~~~~~ 89 (423)
.++.|+...+.-.
T Consensus 103 ~~~agl~~~I~l~ 115 (221)
T 3hvi_A 103 LNFAGLQDKVTIL 115 (221)
T ss_dssp HHHHTCTTTEEEE
T ss_pred HHHCCCCCCEEEE
T ss_conf 9975997741588
No 103
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=35.96 E-value=16 Score=14.15 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=43.5
Q ss_pred CCCCC-EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC--CCCH--HHHHHHHHHHHHHCCCCEE
Q ss_conf 27998-399996694248999999999998648997299999966779--8784--6899999999987189889
Q gi|254780546|r 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETA--KDEVRYVSDVCSRLRIAHS 85 (423)
Q Consensus 16 l~~~~-~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl--r~~s--~~e~~~v~~~~~~lgi~~~ 85 (423)
...++ .+.||+|||..=..+...|.+........--+++.+.+|--+ .+++ .........+...++++-.
T Consensus 28 ~~~~~~~~~i~lsGGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~v~~d~~~Sn~~~l~~~ll~~l~i~~~ 102 (289)
T 1ne7_A 28 NPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPE 102 (289)
T ss_dssp CCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTTSTTSHHHHHHHHTGGGSCCCGG
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 426689889997998689999999999986379987895999434734788885021999999997601543186
No 104
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=35.79 E-value=16 Score=14.13 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 9983999966942489999999999986489972999999
Q gi|254780546|r 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~ 57 (423)
++.||+|++||+.-+.-...++..+. +. +.++.++-
T Consensus 7 ~~KkIllgiTGSiaa~k~~~li~~L~-~~---g~~V~vv~ 42 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFK-SF---FKEIRVVM 42 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHT-TT---SSEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHH-HC---CCEEEEEE
T ss_conf 89969999948899999999999999-78---99399999
No 105
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A
Probab=35.50 E-value=12 Score=14.97 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--787-78037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|..+.+.+++.|+.-++|-||-|=
T Consensus 63 i~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~~l~~Y~~~i~~l~~~gI~P~VTL~H~d~ 122 (431)
T 1ug6_A 63 IALMQSLGVRAYRFSVAWPRILPEGRGRINPKGLAFYDRLVDRLLASGITPFLTLYHWDL 122 (431)
T ss_dssp HHHHHHHTCCEEEEECCHHHHSTTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHCCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999998199989822759982548988759999999999999999749978651347776
No 106
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A {Trifolium repens} SCOP: c.1.8.4
Probab=35.43 E-value=11 Score=15.22 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=43.7
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999871898899997504--787---7803788854555543200123442012345666
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~---~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d 129 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|..+.+.+++.|+.-++|-||-|
T Consensus 79 i~l~~~lG~~~yRfSi~WsRI~P~g~~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H~d 139 (490)
T 1cbg_A 79 IGIMKDMNLDAYRFSISWPRVLPKGKLSGGVNREGINYYNNLINEVLANGMQPYVTLFHWD 139 (490)
T ss_dssp HHHHHHTTCCEEEEECCHHHHSTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred HHHHHHCCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 9999982999788157798647789888986999999999999999983986789860566
No 107
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete chrysosporium} PDB: 2e40_A*
Probab=35.35 E-value=13 Score=14.83 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHHCCCCEEEEEEECC--CCCCCC---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 999871898899997504--787780---37888545555432001234420123456665
Q gi|254780546|r 75 DVCSRLRIAHSVVSWKNS--KPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 75 ~~~~~lgi~~~~~~~~~~--~~~~~~---~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
++++++|+..+-..+++. .|.++. -+.+--..|+.+.+.+++.|+.-++|-||-|-
T Consensus 69 ~l~~elG~~~yRfSi~WsRI~P~g~~~~~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~Hfdl 129 (465)
T 2e3z_A 69 QLLKSYGVKAYRFSLSWSRIIPKGGRSDPVNGAGIKHYRTLIEELVKEGITPFVTLYHWDL 129 (465)
T ss_dssp HHHHHTTCSEEEEECCHHHHSTTCSTTSCCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCC
T ss_pred HHHHHCCCCEEECCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999809998875375998206898778889999999999999999819832354027777
No 108
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=35.16 E-value=16 Score=14.06 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9999998527998399996694248999999999998
Q gi|254780546|r 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS 44 (423)
Q Consensus 8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~ 44 (423)
++....+.+....||.+.=.||+-|+| .|++.++.+
T Consensus 34 aa~~i~~~~~~~~kI~~~GnGgSaa~A-~h~a~dl~~ 69 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDA-QHFSSELLN 69 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHC
T ss_conf 999999999879989999786627779-999999733
No 109
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect, beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne brassicae} SCOP: c.1.8.4
Probab=35.04 E-value=12 Score=14.93 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=44.2
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787--780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~--~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+..+-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|=-
T Consensus 65 i~L~~~lG~~ayRfSI~WsRI~P~g~~g~~n~~gl~~Y~~~id~l~~~GI~P~vTL~Hfd~P 126 (464)
T 1wcg_A 65 VAIIKDLNLKFYRFSISWARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYHWDLP 126 (464)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 99999809998970066998664787798698999999999999998599534533068898
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=34.64 E-value=17 Score=14.01 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHC--CCCCEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 769899999999852--7998399996694248--99999999999864899729999996677987
Q gi|254780546|r 2 FLSPIESVRFFVRSL--VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 (423)
Q Consensus 2 ~~~p~~~~~~~~~~l--~~~~~i~vAvSGG~DS--~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~ 64 (423)
+||+.+.+..-+..+ ..|.+.+||++||+=| +.++..+++....... ...+++.|+-..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~---~~~~i~~d~~~~~ 64 (208)
T 3c8u_A 1 GMTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGL---PAEVVPMDGFHLD 64 (208)
T ss_dssp CCCHHHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTC---CEEEEESGGGBCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEECCCEECC
T ss_conf 988899999999975034999689998898989999999999999734289---8157504535426
No 111
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=33.24 E-value=17 Score=13.86 Aligned_cols=174 Identities=12% Similarity=0.063 Sum_probs=73.7
Q ss_pred HHHHHHHHHC-CCCCEEEEEECCCHHH--------------------HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf 9999999852-7998399996694248--------------------999999999998648997299999966779878
Q gi|254780546|r 7 ESVRFFVRSL-VYPAHILVAVSGGSDS--------------------MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 (423)
Q Consensus 7 ~~~~~~~~~l-~~~~~i~vAvSGG~DS--------------------~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~ 65 (423)
+.++..++.- .....|+|.+|=|.-. ..++.+++.+...... . +++|.|||..+
T Consensus 40 e~~~Avi~AAee~~sPvIlq~s~g~~~y~~~~~~~~~~~~~~~~~g~~~~a~~v~~~a~~~~V---P-ValHLDH~~~~- 114 (358)
T 1dos_A 40 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV---P-VILHTDHCAKK- 114 (358)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTC---E-EEEEECCCCGG-
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-EEEECCCCCCC-
T ss_conf 999999999999788989985751887706753010035677888789899999999986699---8-89966777520-
Q ss_pred HHHHHHHHHH-----HHHHCCCCEEEEEEECCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH-------H------
Q ss_conf 4689999999-----998718988999975047--8778037888545555432001234420123-------4------
Q gi|254780546|r 66 AKDEVRYVSD-----VCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMT-------A------ 125 (423)
Q Consensus 66 s~~e~~~v~~-----~~~~lgi~~~~~~~~~~~--~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~-------a------ 125 (423)
+-+..+.|-+ +.+...--|..+=+|... -..|+....+...|..-....-+.....+-- .
T Consensus 115 ~~~~i~~~idag~~~~~~~~~~gftSVM~D~S~~~~eeNi~~Tk~vve~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~ 194 (358)
T 1dos_A 115 LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASA 194 (358)
T ss_dssp GHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEECCEECCCCCCCCCCCCCCCCC
T ss_conf 03677778898899999727888860365088677899999999999998553434786002215667775433444201
Q ss_pred -HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf -56665668999986236544433223576410035796871012104289999989981893
Q gi|254780546|r 126 -HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 126 -h~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
-+..+++..+...+...+|++.+..+-...--....+...++|=|.+.+.+ ..-...+++
T Consensus 195 ~~T~pe~a~~~~~ef~~~tgvD~LAvaiGt~HG~yk~~~~~l~p~l~~~~l~--~i~~~~~vp 255 (358)
T 1dos_A 195 LYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQE--YVSKKHNLP 255 (358)
T ss_dssp CSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHH--HHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHH--HHHHHHCCC
T ss_conf 3688788999999873467651688741652322478876777025799999--999974899
No 112
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=32.77 E-value=18 Score=13.80 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 69899999999852799839999669424899999999999864899729999996677987846899999999987189
Q gi|254780546|r 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 (423)
Q Consensus 3 ~~p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi 82 (423)
.+|.+.+...+..+.+..=+-||+.-|.+|..|+ . + +.+++ -|| -|..-.+.+++.+++.|+
T Consensus 15 ~~p~~~l~~~~~~~~~~~vLDlGcG~G~~~~~la---~-----~---G~~V~--~vD-----~s~~~l~~a~~~~~~~~~ 76 (202)
T 2kw5_A 15 TEPNDFLVSVANQIPQGKILCLAEGEGRNACFLA---S-----L---GYEVT--AVD-----QSSVGLAKAKQLAQEKGV 76 (202)
T ss_dssp CCCCSSHHHHHHHSCSSEEEECCCSCTHHHHHHH---T-----T---TCEEE--EEC-----SSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH---H-----C---CCCEE--EEE-----CCHHHHHHHHHHHHHHCC
T ss_conf 3578999997413898939998377899999999---8-----6---99146--777-----789999999998887199
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 889999750478778037888545555432001234420123456665668999986236544433223-5764100357
Q gi|254780546|r 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS-GMCDTILYDL 161 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~-~~~~~~~~~~ 161 (423)
...+...+..... .... .+. +......|...+..+.++-++.+..-.+|.-.. ...+......
T Consensus 77 ~~~~~~~d~~~~~--~~~~----~~d----------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~ 140 (202)
T 2kw5_A 77 KITTVQSNLADFD--IVAD----AWE----------GIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN 140 (202)
T ss_dssp CEEEECCBTTTBS--CCTT----TCS----------EEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT
T ss_pred CEEEEECCHHHCC--CCCC----CEE----------EEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 5589982263389--9889----599----------98515785378899999999999819794999998167764456
Q ss_pred CCEEECCHHCCCHHHHHHHHHHHCCC
Q ss_conf 96871012104289999989981893
Q gi|254780546|r 162 NLWISRPFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 162 ~~~i~RPLL~~~r~~l~~~~~~~~i~ 187 (423)
...--.|-..++.++++......++.
T Consensus 141 ~g~p~~~~~~~~~~~l~~~~~~~~~~ 166 (202)
T 2kw5_A 141 TGGPKDLDLLPKLETLQSELPSLNWL 166 (202)
T ss_dssp SCCSSSGGGCCCHHHHHHHCSSSCEE
T ss_pred CCCCCCHHHCCCHHHHHHHCCCCCEE
T ss_conf 79999947789989999865668269
No 113
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=32.66 E-value=18 Score=13.79 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCHHHHH-HHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 99839999669424899-99999999986489972999999667
Q gi|254780546|r 18 YPAHILVAVSGGSDSMG-LLIALHSVLSDRSFGKIKFSAISVDH 60 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~a-Ll~ll~~~~~~~~~~~~~l~a~~vdH 60 (423)
++.||+||+||+....- ...++..+.+ . +.+++++-=+.
T Consensus 4 ~gKrI~lgiTGs~aa~~~~~~li~~L~~-~---g~~V~vv~S~~ 43 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-E---GAEVRPVVSYT 43 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-T---TCEEEEEECC-
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHH-C---CCEEEEEECHH
T ss_conf 8999999974849999999999999998-8---99699998656
No 114
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A {Rauvolfia serpentina} PDB: 2jf6_A
Probab=32.35 E-value=14 Score=14.43 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=43.3
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC---CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999871898899997504--787---7803788854555543200123442012345666
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~---~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d 129 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|+.+.+.+++.|+.-++|-||-|
T Consensus 103 i~L~~~lG~~~yRfSIsWsRI~P~g~~~g~~n~~gl~~Y~~~id~l~~~GI~PiVTL~Hfd 163 (532)
T 2jf7_A 103 IKIMKQTGLESYRFSISWSRVLPGGRLAAGVNKDGVKFYHDFIDELLANGIKPSVTLFHWD 163 (532)
T ss_dssp HHHHHHHTCSEEEEECCHHHHSTTSSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred HHHHHHHCCCEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999980999787127598706689878886989999999999999985996677503755
No 115
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis, PEST defense, family GH1, hydrolase; 1.9A {Sorghum bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Probab=32.10 E-value=16 Score=14.17 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=43.3
Q ss_pred HHHHHHCCCCEEEEEEECC--CCCC---CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999871898899997504--7877---8037888545555432001234420123456665
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~~---~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD 130 (423)
-++++++|+.++-..+++. .|.+ +.-+.+--..|+.+.+.+++.|+.-++|-||-|-
T Consensus 136 i~L~~elG~~ayRfSIsWsRI~P~G~~~g~~N~~gl~~Y~~lid~L~~~GIeP~VTL~Hfd~ 197 (565)
T 1v02_A 136 VRLLKEMGMDAYRFSISWPRILPKGTLAGGINEKRVEYYNKLIDLLLENGIEPYITIFHWDT 197 (565)
T ss_dssp HHHHHHTTCSEEEEECCHHHHSTTSSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99999819997881377987588898889989999999999999999849989998248776
No 116
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=31.65 E-value=18 Score=13.68 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=30.9
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 52799839999669424899999999999864899729999996677987
Q gi|254780546|r 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 (423)
Q Consensus 15 ~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~ 64 (423)
.+....++.|++|||.--..|...+.+ ....--+++.+.+|--+=+
T Consensus 32 ~i~~~~~~~l~lsGGstp~~ly~~L~~----~~i~w~~v~~~~~DEr~v~ 77 (233)
T 3nwp_A 32 AVDARGKASLVVSGGSTPLKLFQLLSM----KSIDWSDVYITLADERWVE 77 (233)
T ss_dssp HHHHHSCEEEEECCSSTTHHHHHHHHH----CCSCGGGEEEEESEEESSC
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCHHCEEEEEEEECCC
T ss_conf 998679889997688219999999873----4489243548731476267
No 117
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.52 E-value=19 Score=13.61 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999989981893202667
Q gi|254780546|r 174 REDIRSFLLQRNISWCEDPS 193 (423)
Q Consensus 174 r~~l~~~~~~~~i~wveDpS 193 (423)
-+.|+++++++|++.++||.
T Consensus 29 A~~I~~~A~~~gVPi~~d~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHCCCCEEECHH
T ss_conf 99999999984997882999
No 118
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=30.49 E-value=19 Score=13.55 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 999998527998399996694248999999999998
Q gi|254780546|r 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS 44 (423)
Q Consensus 9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~ 44 (423)
+....+.+..+.||.+.=.||+-++|. |.+.++..
T Consensus 54 a~~i~~~~~~ggrI~~~GnGgSa~~A~-h~a~e~~~ 88 (212)
T 2i2w_A 54 AVLLADSFKAGGKVLSCGNGGSHCDAM-HFAEELTG 88 (212)
T ss_dssp HHHHHHHHHTTCCEEEEESTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHH-HHHHHHHC
T ss_conf 999999998799799996895255299-89998718
No 119
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} SCOP: c.124.1.8
Probab=30.12 E-value=19 Score=13.51 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=31.8
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHH-HHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999852799839999669424899999999999864899729999996677987-846-89999999998718988999
Q gi|254780546|r 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAK-DEVRYVSDVCSRLRIAHSVV 87 (423)
Q Consensus 10 ~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~-~e~~~v~~~~~~lgi~~~~~ 87 (423)
..++..+.++.. .||+|+|.= |..+... ......+ ++.++...-|+.. .+. .-...+..+++++|-+++.+
T Consensus 48 A~~l~~~l~~~~-~IGv~wG~T---l~~~~~~-l~~~~~~--~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~~~~~~~l 120 (266)
T 2gnp_A 48 AGVLRNLIDDNM-KIGFSWGKS---LSNLVDL-IHSKSVR--NVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFM 120 (266)
T ss_dssp HHHHHHHCCTTC-EEEECCSHH---HHHHHHH-CCCCCCS--SCEEEESBCCCTTSCGGGSHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHCCCCC-EEEEECCHH---HHHHHHH-HCCCCCC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 999998577899-899938888---9999997-1755767--73488247887777665689999999999809966522
Q ss_pred EEE
Q ss_conf 975
Q gi|254780546|r 88 SWK 90 (423)
Q Consensus 88 ~~~ 90 (423)
...
T Consensus 121 ~aP 123 (266)
T 2gnp_A 121 NAT 123 (266)
T ss_dssp CSC
T ss_pred CCC
T ss_conf 475
No 120
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=30.03 E-value=20 Score=13.50 Aligned_cols=89 Identities=16% Similarity=-0.010 Sum_probs=48.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 79983999966942489999999999986489972999999667798784689999999998718988999975047877
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~ 96 (423)
..+.|++|-+||. ..+|-.++..+. .+..+.++.+|.-||.- + ....++..+||++.+.++..
T Consensus 86 ~~k~riaIlvS~~--gh~L~~Ll~~~~--~g~L~~eI~~VISN~~~---~------~~~~a~~~~ip~~~~~~~~~---- 148 (287)
T 3nrb_A 86 TDRKKVVIMVSKF--DHCLGDLLYRHR--LGELDMEVVGIISNHPR---E------ALSVSLVGDIPFHYLPVTPA---- 148 (287)
T ss_dssp TCCCEEEEEECSC--CHHHHHHHHHHH--HTSSCCEEEEEEESSCG---G------GCCCCCCTTSCEEECCCCGG----
T ss_pred CCCCEEEEEECCC--CCCHHHHHHHHH--HCCCCEEEEEEECCCCH---H------HHHHHHHCCCCEEEECCCCC----
T ss_conf 5682489999089--700999999877--45699049999826840---6------79999877999899748987----
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 8037888545555432001234420123456
Q gi|254780546|r 97 GLMAAAREARYALISEHAKTINATLIMTAHT 127 (423)
Q Consensus 97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~ 127 (423)
+.+ .....+.+..++.+.+.++++..
T Consensus 149 ~~~-----~~e~~~~~~l~~~~~Dlivlag~ 174 (287)
T 3nrb_A 149 TKA-----AQESQIKNIVTQSQADLIVLARY 174 (287)
T ss_dssp GHH-----HHHHHHHHHHHHHTCSEEEESSC
T ss_pred CHH-----HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 678-----99999987875268769998700
No 121
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=29.90 E-value=20 Score=13.49 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999989981893202667
Q gi|254780546|r 174 REDIRSFLLQRNISWCEDPS 193 (423)
Q Consensus 174 r~~l~~~~~~~~i~wveDpS 193 (423)
-..|+++++++|++.++||.
T Consensus 29 A~~I~~~A~~~gIPiv~~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHCCCCEEECHH
T ss_conf 99999999985998884999
No 122
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=29.86 E-value=20 Score=13.48 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=33.9
Q ss_pred ECCCEEEEEECCEEEEEECCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEEC
Q ss_conf 10757999889989998453437755236898232078417512777503521
Q gi|254780546|r 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 (423)
Q Consensus 303 tl~g~~i~~~~~~l~i~RE~~~~~~~~~~~~~~~~wDgR~~i~~~~~~~~~l~ 355 (423)
..=.+.|++....++++--...+++.++.-.....|.|.+.+ .-|....+.
T Consensus 20 ~~MKVMiRkn~~Gls~YVpKKDLEE~VV~~e~~~~WGG~vtL--aNGW~l~lp 70 (87)
T 2jn4_A 20 QGMKVMIRKTATGHSAYVAKKDLEELIVEMENPALWGGKVTL--ANGWQLELP 70 (87)
T ss_dssp --CCEEEEECSSCEEEEETTTTEEEEEEEESSSSSCSSEEEE--TTSCEEECC
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEE--CCCCEEEEC
T ss_conf 157899996798339997777520212451257655888997--897789828
No 123
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=29.37 E-value=20 Score=13.42 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCE--EEEEECCCHHHHHHHHHHHHH
Q ss_conf 9999999985279983--999966942489999999999
Q gi|254780546|r 6 IESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSV 42 (423)
Q Consensus 6 ~~~~~~~~~~l~~~~~--i~vAvSGG~DS~aLl~ll~~~ 42 (423)
..++.+.++.+.++.+ ++.++||...++.+..++...
T Consensus 18 ~~ai~~l~~~l~~g~~~~~l~Gl~gsa~a~~~a~l~~~~ 56 (661)
T 2d7d_A 18 PKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV 56 (661)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999999996699868986888638999999999973
No 124
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=29.21 E-value=20 Score=13.40 Aligned_cols=66 Identities=9% Similarity=0.105 Sum_probs=40.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC--CCCHHH--HHHHHHHHHHHCCCCEE
Q ss_conf 8399996694248999999999998648997299999966779--878468--99999999987189889
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD--EVRYVSDVCSRLRIAHS 85 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl--r~~s~~--e~~~v~~~~~~lgi~~~ 85 (423)
..+.+|+|||..=..+...+.+........--+++.+.+|--+ ..++.+ ....-+.+...++++..
T Consensus 33 ~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~v~~~~~~Sn~~~~~~~l~~~l~i~~~ 102 (266)
T 1fs5_A 33 RPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE 102 (266)
T ss_dssp SCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGG
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9779998999559999999998886159984467999696351689995563999999986523577899
No 125
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Probab=28.93 E-value=20 Score=13.37 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=37.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7998399996694248999999999998648997299999966779878468999999999871898899997
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~ 89 (423)
..+.|++|-+||.. ++|..++..+. .+..+.++.++.-||- + +..+++..|+|++....
T Consensus 93 ~~~~riavlvSg~g--~~L~~Ll~~~~--~g~L~~eI~~ViSN~~---~-------~~~l~~a~~ip~~~~~~ 151 (292)
T 3lou_A 93 AARPKVLIMVSKLE--HCLADLLFRWK--MGELKMDIVGIVSNHP---D-------FAPLAAQHGLPFRHFPI 151 (292)
T ss_dssp TSCCEEEEEECSCC--HHHHHHHHHHH--HTSSCCEEEEEEESSS---T-------THHHHHHTTCCEEECCC
T ss_pred CCCCEEEEEECCCC--CCHHHHHHHHH--CCCCCEEEEEEECCCC---C-------HHHHHHHHCCCEEEEEC
T ss_conf 56836999967998--26999999997--6999817999974894---2-------79999975498478615
No 126
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A {Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Probab=28.56 E-value=18 Score=13.67 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=43.2
Q ss_pred HHHHHCCCCEEEEEEECC--CCCC-CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999871898899997504--7877-80378885455554320012344201234566656
Q gi|254780546|r 75 DVCSRLRIAHSVVSWKNS--KPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 75 ~~~~~lgi~~~~~~~~~~--~~~~-~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
++++++|+..+-..+++. .|.+ +.-+.+--..|..+.+.+++.|+.-++|-||-|--
T Consensus 86 ~l~~~lG~~~yRfSi~WsRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~H~d~P 145 (465)
T 3fj0_A 86 DLMRQLGLKTYRFSIAWARIQPDSSRQINQRGLDFYRRLVEGLHKRDILPMATLYHWDLP 145 (465)
T ss_dssp HHHHHHTCSEEEEECCHHHHCCSTTCCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCB
T ss_pred HHHHHCCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 999980999897306599903289887698999999999999998498427997388898
No 127
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4 PDB: 3pbg_A 2pbg_A 4pbg_A*
Probab=28.51 E-value=18 Score=13.71 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=44.3
Q ss_pred HHHHHHCCCCEEEEEEECC--CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999871898899997504--787-780378885455554320012344201234566656
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~-~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
-++++++|+.++-..+++. .|. .+.-+.+--..|+.+.+.+.+.|+.-++|-||-|=-
T Consensus 60 i~l~~~lG~~~yRfSIsWsRI~P~g~g~~n~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (468)
T 1pbg_A 60 LELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 120 (468)
T ss_dssp HHHHHHTTCCEEEEECCHHHHSTTSSSSCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCB
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9999980999798456798777589898599999999999999998299888874277784
No 128
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=27.98 E-value=21 Score=13.26 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCCCEEEEEE--CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC--C---CH-----------HHHHHHHHHHHH
Q ss_conf 7998399996--6942489999999999986489972999999667798--7---84-----------689999999998
Q gi|254780546|r 17 VYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--E---TA-----------KDEVRYVSDVCS 78 (423)
Q Consensus 17 ~~~~~i~vAv--SGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr--~---~s-----------~~e~~~v~~~~~ 78 (423)
....+|+||+ +|-.+|-..+..+.++..... .+|+.+||-..-. . .+ .+..+...+.+.
T Consensus 13 ~~~k~ILvavd~d~s~~s~~al~~A~~lA~~~~---a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYD---VPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAE 89 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHT---CCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778739999799999999999999999987638---88999986314322530113877999999999999999999887
Q ss_pred HCCCCEEEEE-EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 7189889999-75047877803788854555543200123442012345666
Q gi|254780546|r 79 RLRIAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 (423)
Q Consensus 79 ~lgi~~~~~~-~~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~d 129 (423)
+.+++..... .....+. . ..+...+++.+++.+++|.|..
T Consensus 90 ~~~~~~~~~~~~~~g~~~---~--------~il~~~a~~~~~DLiV~G~~~~ 130 (156)
T 3fg9_A 90 QRGVNQVEPLVYEGGDVD---D--------VILEQVIPEFKPDLLVTGADTE 130 (156)
T ss_dssp HHTCSSEEEEEEECSCHH---H--------HHHHTHHHHHCCSEEEEETTCC
T ss_pred HHCCCCEEEEEEECCCCH---H--------HHHHCHHHHHCCCEEEECCCCC
T ss_conf 606764048998427823---7--------5410237772998999817899
No 129
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.30 E-value=23 Score=13.05 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 9999985279983999966942489999999999986
Q gi|254780546|r 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45 (423)
Q Consensus 9 ~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~ 45 (423)
+....+.+....||.+.=-||+-++| -|++.++...
T Consensus 31 a~~i~~~~~~~~kI~~~GnGgSa~~A-~h~a~~l~~~ 66 (196)
T 2yva_A 31 AMTLVQSLLNGNKILCCGNGTSAANA-QHFAASMINR 66 (196)
T ss_dssp HHHHHHHHHTTCCEEEEESTHHHHHH-HHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHCC
T ss_conf 99999999879989999886728899-9999998661
No 130
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=26.00 E-value=23 Score=13.02 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=22.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 83999966942489999999999986489972999999
Q gi|254780546|r 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 (423)
Q Consensus 20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~ 57 (423)
.||+||+||++-+.--+.++..+.+ . +.+++++-
T Consensus 2 krI~lgITGasga~~a~~l~~~L~k-~---g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-L---DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-T---TCEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHH-C---CCEEEEEE
T ss_conf 8899997428999999999999997-8---99799996
No 131
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=25.63 E-value=23 Score=12.97 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CHHH-HHHHHH-HHHHHCCCCE
Q ss_conf 852799839999669424899999999999864899729999996677987-8468-999999-9998718988
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKD-EVRYVS-DVCSRLRIAH 84 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-~s~~-e~~~v~-~~~~~lgi~~ 84 (423)
+.+....++.|++|||.--..+...+.+ ....--++..+.+|--+=+ ++.+ -...+. .+....+++.
T Consensus 39 ~~l~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~~v~~~~~DER~V~~~~~~Sn~~~~~~~L~~~~~i~~ 108 (232)
T 1vl1_A 39 KLLEEKDKIFVVLAGGRTPLPVYEKLAE----QKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPS 108 (232)
T ss_dssp HHHHHCSCEEEEECCSTTHHHHHHHHTT----SCCCGGGEEEEESEEESSCTTSTTCHHHHHHHHTTTTSCCCG
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHH----CCCCHHHEEEEECCEEECCCCCCCCHHHHHHHHHHCCCCCCH
T ss_conf 9998779989998998249999999985----599813369994646723888740258899999745565657
No 132
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=25.53 E-value=23 Score=12.96 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89999989981893202667864221
Q gi|254780546|r 174 REDIRSFLLQRNISWCEDPSNTDDRF 199 (423)
Q Consensus 174 r~~l~~~~~~~~i~wveDpSN~d~~f 199 (423)
=++|.++|+.+|+..|||-+..-...
T Consensus 167 ~~~i~~i~k~~~i~vIEDaAqa~Ga~ 192 (399)
T 2oga_A 167 MDALRELADRHGLHIVEDAAQAHGAR 192 (399)
T ss_dssp HHHHHHHHHHHTCEECEECTTCTTCE
T ss_pred HHHHHHHHHHCCCEEEEECCCHHCCC
T ss_conf 69999999973986999773121573
No 133
>1t0k_B YL32, RP73, 60S ribosomal protein L30; joint and X-RAY refinement, ribosomal protein L30E, MBP fusion protein, ribosome; HET: MTT; 3.24A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=24.77 E-value=22 Score=13.19 Aligned_cols=21 Identities=0% Similarity=-0.314 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEE
Q ss_conf 468999999999871898899
Q gi|254780546|r 66 AKDEVRYVSDVCSRLRIAHSV 86 (423)
Q Consensus 66 s~~e~~~v~~~~~~lgi~~~~ 86 (423)
|..-...+..+|+..+||.+.
T Consensus 49 s~~~~~~i~~~~~~~~Vpv~~ 69 (105)
T 1t0k_B 49 PVLRKSELEYYAMLSKTKVYY 69 (105)
T ss_dssp CHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEE
T ss_conf 988999999999865998199
No 134
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Probab=24.42 E-value=24 Score=12.82 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=39.4
Q ss_pred HHHHHHHCCCCEEEEEE--ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999871898899997--50478778037888545555432001234420123456
Q gi|254780546|r 73 VSDVCSRLRIAHSVVSW--KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 (423)
Q Consensus 73 v~~~~~~lgi~~~~~~~--~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~ 127 (423)
..+..+++|+.+.-+-+ +...+..+.-..+--.++..+.++|.+.|+..++.-||
T Consensus 71 ~~~~l~~~GfN~vRl~v~W~~iep~~g~yd~~~l~~l~~~v~~a~~~Gi~vilDlHq 127 (481)
T 2osx_A 71 LAREYADMGTNFVRFLISWRSVEPAPGVYDQQYLDRVEDRVGWYAERGYKVMLDMHQ 127 (481)
T ss_dssp HHHHHHHHCCCEEEEEECHHHHCSBTTBCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999779988985376999389999639899999999999999779989997144
No 135
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=24.42 E-value=24 Score=12.82 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=37.1
Q ss_pred CEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC---CCEE
Q ss_conf 839999669424-89999999999986489972999999667798784689999999998718---9889
Q gi|254780546|r 20 AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR---IAHS 85 (423)
Q Consensus 20 ~~i~vAvSGG~D-S~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg---i~~~ 85 (423)
.||++=.=.|.| .+||+.++. .+.++|.++|+-+|-- ..++-...+..+++-+| ||.+
T Consensus 2 kkvIiDtD~G~DDa~AL~~al~-------~p~v~l~gIt~v~GN~-~~~~~~~n~~~ll~~~g~~dIPV~ 63 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHG-------NPEIELLAITTVVGNQ-TLAKVTRNAQLVADIAGITGVPIA 63 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-------CTTEEEEEEEECSSSS-CHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHH-------CCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 8799989996699999999976-------8997899999777984-799999999999998589998885
No 136
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein transport, type III secretion system, plasmid; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=23.49 E-value=25 Score=12.70 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 042899999899818932026678
Q gi|254780546|r 171 RCRREDIRSFLLQRNISWCEDPSN 194 (423)
Q Consensus 171 ~~~r~~l~~~~~~~~i~wveDpSN 194 (423)
+.--..|++.++++|++.++||.=
T Consensus 79 g~~A~~I~~~A~e~gIPi~e~~~L 102 (144)
T 2jlj_A 79 DAQVQTVRKIAEEEGVPILQRIPL 102 (144)
T ss_dssp THHHHHHHHHHHHHTCCEEECHHH
T ss_pred CHHHHHHHHHHHHCCCCEEECHHH
T ss_conf 299999999999859978848999
No 137
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cyclization, membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=23.09 E-value=26 Score=12.65 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 042899999899818932026678
Q gi|254780546|r 171 RCRREDIRSFLLQRNISWCEDPSN 194 (423)
Q Consensus 171 ~~~r~~l~~~~~~~~i~wveDpSN 194 (423)
+..-..|+++++++|++.++||.=
T Consensus 80 g~~A~~I~~~A~e~gVPi~e~~~L 103 (137)
T 3bzs_A 80 DAKALQIIKLAELYDIPVIEDIPL 103 (137)
T ss_dssp THHHHHHHHHHHHHTCCEEECHHH
T ss_pred CHHHHHHHHHHHHCCCCEEECHHH
T ss_conf 499999999999849958878999
No 138
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=22.89 E-value=26 Score=12.62 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCC
Q ss_conf 289999989981893202667
Q gi|254780546|r 173 RREDIRSFLLQRNISWCEDPS 193 (423)
Q Consensus 173 ~r~~l~~~~~~~~i~wveDpS 193 (423)
--..|++.++++|++.++||.
T Consensus 28 ~A~~I~~~A~~~gIPi~~~~~ 48 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHCCCCEECCHH
T ss_conf 999999999995998870999
No 139
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=22.61 E-value=26 Score=12.58 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=31.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 998399996694248999999999998648997299999966
Q gi|254780546|r 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vd 59 (423)
.-.+|+|++-|-.+|-..+..+.++.... +.+++.+||-
T Consensus 3 ~mk~ILv~~D~s~~s~~al~~A~~la~~~---~a~l~llhv~ 41 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKL---GAELDILAVL 41 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTT---CCEEEEEEEC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEEC
T ss_conf 67999999809989999999999988773---9845999972
No 140
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=22.53 E-value=26 Score=12.57 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999899818932026678642
Q gi|254780546|r 175 EDIRSFLLQRNISWCEDPSNTDD 197 (423)
Q Consensus 175 ~~l~~~~~~~~i~wveDpSN~d~ 197 (423)
++|.++|+++|++.+||-+-.-.
T Consensus 141 ~~i~~ia~~~~i~lIeD~A~a~g 163 (373)
T 3frk_A 141 DEIKRIAKKYNLKLIEDAAQAHG 163 (373)
T ss_dssp HHHHHHHHHHTCEEEEECTTCTT
T ss_pred HHHHHHHHHCCCEEEEECCCHHH
T ss_conf 99999999859989999811231
No 141
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3n4z_A 2bo1_A
Probab=22.48 E-value=26 Score=12.56 Aligned_cols=21 Identities=10% Similarity=-0.151 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 689999999998718988999
Q gi|254780546|r 67 KDEVRYVSDVCSRLRIAHSVV 87 (423)
Q Consensus 67 ~~e~~~v~~~~~~lgi~~~~~ 87 (423)
..-...+..+|+..+||.+..
T Consensus 44 ~~~~~~i~~~c~~~~Vp~~~~ 64 (101)
T 1w41_A 44 PDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEE
T ss_conf 899999999998359975998
No 142
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=22.24 E-value=27 Score=12.53 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=23.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999669424899999999999864899729999996677987846899999999987189889
Q gi|254780546|r 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 (423)
Q Consensus 22 i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~ 85 (423)
++|++-|-.=.+.++.+++.+... + .++..++.|.- |+.+-+ ..+.+|+.+|+|++
T Consensus 106 ~lvG~~G~GKTTt~aKlA~~~~~~-~---~kv~li~~Dt~-R~ga~e---QL~~~a~~~~v~~~ 161 (304)
T 1rj9_A 106 LVVGVNGVGKTTTIAKLGRYYQNL-G---KKVMFCAGDTF-RAAGGT---QLSEWGKRLSIPVI 161 (304)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTT-T---CCEEEECCCCS-STTTTH---HHHHHHHHHTCCEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHH-C---CCCEEEECCCC-CCHHHH---HHHHHCCCCCCEEE
T ss_conf 952466777411899999998651-1---54003421420-000678---99985655685079
No 143
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=21.95 E-value=27 Score=12.49 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 899999999852799839999669424899999999
Q gi|254780546|r 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALH 40 (423)
Q Consensus 5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~ 40 (423)
|.+.+...+..+.+...|++-+.+|..|......|.
T Consensus 41 p~~~l~~~~~~l~~d~~iv~yC~~G~rS~~aa~~L~ 76 (108)
T 3gk5_A 41 PISELREKWKILERDKKYAVICAHGNRSAAAVEFLS 76 (108)
T ss_dssp CHHHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHH
T ss_pred CCCCHHHHEEECCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 410012220203877776788899849999999999
No 144
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens str} SCOP: c.1.11.2 d.54.1.1
Probab=21.93 E-value=27 Score=12.49 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999899818932026678642210189997643
Q gi|254780546|r 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 (423)
Q Consensus 177 l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~ 209 (423)
+...+...++.|+|||-..+..-.=.++|+.+.
T Consensus 219 ~~~~L~~~~l~wiEeP~~~~d~~~~~~l~~~~~ 251 (382)
T 1rvk_A 219 LGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLD 251 (382)
T ss_dssp HHHHHHTTTCSEEECCSCTTCHHHHHHHHHHCS
T ss_pred HHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCC
T ss_conf 999975308760217898447899999997679
No 145
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A {Thermosphaera aggregans} SCOP: c.1.8.4
Probab=21.60 E-value=28 Score=12.45 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=42.5
Q ss_pred HHHHHHCCCCEEEEEEECC--CCCCC------------------------------CHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871898899997504--78778------------------------------037888545555432001234420
Q gi|254780546|r 74 SDVCSRLRIAHSVVSWKNS--KPQTG------------------------------LMAAAREARYALISEHAKTINATL 121 (423)
Q Consensus 74 ~~~~~~lgi~~~~~~~~~~--~~~~~------------------------------~~~~ar~~r~~~~~~~~~~~~~~~ 121 (423)
-++++++|+.++-..+++. .|.+. .-+.+--..|.-+...+.+.|+.-
T Consensus 66 i~l~~~lG~~~yRfSIsWsRI~P~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~N~~gl~~Y~~~i~~l~~~GI~P 145 (481)
T 1qvb_A 66 HDLAEKLGVNTIRVGVEWSRIFPKPTFNVKVPVERDENGSIVHVDVDDKAVERLDELANKEAVNHYVEMYKDWVERGRKL 145 (481)
T ss_dssp HHHHHHTTCCEEEEECCHHHHCSSCCTTSCCCEEECTTSCEEEECCCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999749998972264976684787765443333445542222222100000134579999999999999999869989
Q ss_pred HHHHHHHHH
Q ss_conf 123456665
Q gi|254780546|r 122 IMTAHTFDD 130 (423)
Q Consensus 122 l~~ah~~dD 130 (423)
++|-||-|-
T Consensus 146 ~VTL~H~dl 154 (481)
T 1qvb_A 146 ILNLYHWPL 154 (481)
T ss_dssp EEESCCSCC
T ss_pred EEEEECCCC
T ss_conf 999847888
No 146
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=21.06 E-value=28 Score=12.37 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 42899999899818932026678
Q gi|254780546|r 172 CRREDIRSFLLQRNISWCEDPSN 194 (423)
Q Consensus 172 ~~r~~l~~~~~~~~i~wveDpSN 194 (423)
..-..|++.++++|++.++||.=
T Consensus 71 ~~A~~I~~~A~~~gIPi~~d~~L 93 (123)
T 2jli_A 71 AQVQTVRKIAEEEGVPILQRIPL 93 (123)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHHHCCCCEEECHHH
T ss_conf 99999999999859988978999
No 147
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=20.78 E-value=29 Score=12.33 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 99999985279983999966942489999999999986
Q gi|254780546|r 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45 (423)
Q Consensus 8 ~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~ 45 (423)
++....+.+..+.||.+.=.||+-+.|. |++.++...
T Consensus 31 a~~~i~~~~~~~~kI~~~GnGgSa~~A~-h~a~~~~~~ 67 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAADAQ-HFAAELSGR 67 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHH-HHHHHHHSC
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHHCCC
T ss_conf 9999999998799899996873188899-999984588
No 148
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A*
Probab=20.40 E-value=19 Score=13.62 Aligned_cols=15 Identities=7% Similarity=-0.221 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789899999999983
Q gi|254780546|r 262 TLLFYLLRVSAAICG 276 (423)
Q Consensus 262 ~~~~r~l~~~l~~~~ 276 (423)
..++..|...++++.
T Consensus 244 ~~W~~~L~~fl~~~~ 258 (268)
T 1jjf_A 244 NVWKPGLWNFLQMAD 258 (268)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 149
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=20.37 E-value=29 Score=12.27 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 8999999998527998399996694248999999999
Q gi|254780546|r 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHS 41 (423)
Q Consensus 5 p~~~~~~~~~~l~~~~~i~vAvSGG~DS~aLl~ll~~ 41 (423)
|.+.+...+..+.+..+|++-+.+|..|......+.+
T Consensus 44 p~~~l~~~~~~~~~~~~ii~~c~~g~~s~~~a~~l~~ 80 (108)
T 1gmx_A 44 TNDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQ 80 (108)
T ss_dssp CHHHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 5221699876532468704788998589999999998
No 150
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=20.04 E-value=30 Score=12.23 Aligned_cols=22 Identities=23% Similarity=-0.008 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4566656689999862365444
Q gi|254780546|r 125 AHTFDDQLETVYMRSQRDYAEK 146 (423)
Q Consensus 125 ah~~dD~~Et~l~rl~r~sg~~ 146 (423)
|.-+|=-+|-|+--.+|-+|..
T Consensus 303 GFGaDlGaEKF~dIkcr~~gl~ 324 (557)
T 1eg7_A 303 GFGADLGAEKFYDVKCRYAGFK 324 (557)
T ss_dssp SSCTTTHHHHHHHTHHHHHTCC
T ss_pred CCCCCCCCHHHCCCCCCCCCCC
T ss_conf 3466635364303335568989
Done!