HHSEARCH alignment of GI: 254780546 and SCOP domain: d1vbka1

Alignment
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.70  E-value=0.00015  Score=47.96  Aligned_cols=128  Identities=9%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCCCC
Q ss_conf             9983999966942489999999999986489972999999667798784689999999998718--98899997504787
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR--IAHSVVSWKNSKPQ   95 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lg--i~~~~~~~~~~~~~   95 (423)
                      ...|+++=+|||- |-+-.+++..    +   +.++..+|++++  +++.+-+..+.+..+++.  .+.+....+     
T Consensus         3 t~Gk~l~LlSGGi-SpVAa~lmmk----R---G~~V~~v~f~~~--~~~~ekv~~l~~~L~~y~~~~~~~~~v~~-----   67 (132)
T d1vbka1           3 TEGRMIGILHDEL-SALAIFLMMK----R---GVEVIPVYIGKD--DKNLEKVRSLWNLLKRYSYGSKGFLVVAE-----   67 (132)
T ss_dssp             TTCEEEEECSSHH-HHHHHHHHHH----B---TCEEEEEEESCS--SHHHHHHHHHHHHHHTTCTTSCCCCEEES-----
T ss_pred             CCCEEEEEECCCC-HHHHHHHHHH----C---CCEEEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEEE-----
T ss_conf             6762888633784-2999999997----7---987999997188--88999999999999984899872899950-----


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCHH
Q ss_conf             78037888545555432001234420123456665668999986236544433223576410035796871012104289
Q gi|254780546|r   96 TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE  175 (423)
Q Consensus        96 ~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~r~  175 (423)
                                .++.+.+.+++.++..++||..... ...+..+...          .+     ..-+..++|||+++.|+
T Consensus        68 ----------~~~~~~riA~~~~a~~ivtG~~~e~-vgqvasqt~~----------~~-----~~~~~pIlRPLi~~DK~  121 (132)
T d1vbka1          68 ----------SFDRVLKLIRDFGVKGVIKGLRPND-LNSEVSEITE----------DF-----KMFPVPVYYPLIALPEE  121 (132)
T ss_dssp             ----------SHHHHHHHHHHHTCCEEECCCCGGG-CCTTCHHHHH----------HH-----HHCSSCEECHHHHSCHH
T ss_pred             ----------HHHHHHHHHHHHHHHCEEEEEECCC-HHHHHHHHHH----------HH-----HCCCCCCCCCCCCCCHH
T ss_conf             ----------8999999999964626488873562-1018899999----------98-----63066210286789999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99998998189
Q gi|254780546|r  176 DIRSFLLQRNI  186 (423)
Q Consensus       176 ~l~~~~~~~~i  186 (423)
                      ||.+.+++.|+
T Consensus       122 EIi~~Ar~IGl  132 (132)
T d1vbka1         122 YIKSVKERLGL  132 (132)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998585


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Hypothetical protein PH1313, C-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]