HHSEARCH alignment of GI: 254780546 and SCOP domain: d2pg3a1

Alignment
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=99.15  E-value=2.8e-10  Score=88.52  Aligned_cols=146  Identities=17%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC------
Q ss_conf             83999966942489999999999986489972999999667798784689999999998718988999975047------
Q gi|254780546|r   20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------   93 (423)
Q Consensus        20 ~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~------   93 (423)
                      .|++|.+|||.||+++++++.+    .   +.+++++|+|+|-+.  ..|.+.++..|+.+++++..+......      
T Consensus         2 kK~Vvl~SGGlDS~v~a~~l~~----~---g~~v~~v~~~ygqr~--~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (230)
T d2pg3a1           2 KRAVVVFSGGQDSTTCLIQALQ----D---YDDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGLLNELATS   72 (230)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHH----H---CSEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHH----C---CCEEEEEEEECCCCC--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
T ss_conf             8699984886889999999998----6---996999999889754--899999987677635440122103344312455


Q ss_pred             -------CC--CCCHH--------HHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCCC
Q ss_conf             -------87--78037--------88854-55554320012344201234566656------689999862365444332
Q gi|254780546|r   94 -------PQ--TGLMA--------AAREA-RYALISEHAKTINATLIMTAHTFDDQ------LETVYMRSQRDYAEKGMG  149 (423)
Q Consensus        94 -------~~--~~~~~--------~ar~~-r~~~~~~~~~~~~~~~l~~ah~~dD~------~Et~l~rl~r~sg~~g~~  149 (423)
                             +.  ...+.        ..|.. -.......+...++..+.+|.+..|.      ...+...+....      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~~l~~~~~~a~~~~~~~i~~G~~~~d~~~~~d~~~~f~~~~~~~~------  146 (230)
T d2pg3a1          73 SLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAI------  146 (230)
T ss_dssp             HHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHH------
T ss_pred             CCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH------
T ss_conf             43344544320234412677526650068889999999887212121454333433356654076899999887------


Q ss_pred             CCCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf             2357641003579687101210428999998998189
Q gi|254780546|r  150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI  186 (423)
Q Consensus       150 l~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i  186 (423)
                        .    .....++++.+||+..+|.||...+.+.+.
T Consensus       147 --~----~~~~~~~~i~~P~~~~tK~EI~~~~~~~~~  177 (230)
T d2pg3a1         147 --V----LGIARDIRFETPLMWLNKAETWALADYYQQ  177 (230)
T ss_dssp             --H----HHHTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred             --H----HCCCCCCEEEEEEECCCHHHHHHHHHHCCC
T ss_conf             --7----515665326864315889999999876056


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Queuosine biosynthesis protein QueC
species: Erwinia carotovora [TaxId: 554]